Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61804.t1 | GAU43673.1 | 70.2 | 537 | 107 | 8 | 110 | 630 | 40 | 539 | 2.40E-205 | 725.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61804.t1 | Q9M2U3 | 32.0 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 1.5e-17 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61804.t1 | A0A2Z6NNS9 | 70.2 | 537 | 107 | 8 | 110 | 630 | 40 | 539 | 1.7e-205 | 725.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050855 | MS.gene61804 | 0.876852 | 1.00E-68 | -1.69E-46 |
| MS.gene052056 | MS.gene61804 | -0.814581 | 1.43E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene61804 | 0.810605 | 1.06E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene61804 | 0.801821 | 7.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61804.t1 | MTR_0697s0010 | 84.375 | 320 | 32 | 3 | 306 | 622 | 1 | 305 | 0.0 | 538 |
| MS.gene61804.t1 | MTR_3g075160 | 65.350 | 329 | 107 | 4 | 306 | 631 | 1 | 325 | 9.56e-142 | 415 |
| MS.gene61804.t1 | MTR_3g453160 | 61.972 | 213 | 77 | 3 | 419 | 631 | 1 | 209 | 9.01e-78 | 246 |
| MS.gene61804.t1 | MTR_4g117940 | 87.736 | 106 | 13 | 0 | 2 | 107 | 71 | 176 | 3.81e-65 | 212 |
| MS.gene61804.t1 | MTR_4g055725 | 47.596 | 208 | 89 | 2 | 6 | 213 | 78 | 265 | 2.17e-55 | 189 |
| MS.gene61804.t1 | MTR_1g052620 | 84.706 | 85 | 13 | 0 | 538 | 622 | 1 | 85 | 7.27e-42 | 150 |
| MS.gene61804.t1 | MTR_4g117120 | 53.731 | 134 | 62 | 0 | 2 | 135 | 149 | 282 | 5.67e-39 | 148 |
| MS.gene61804.t1 | MTR_4g117120 | 46.739 | 92 | 38 | 2 | 238 | 328 | 285 | 366 | 3.93e-15 | 78.2 |
| MS.gene61804.t1 | MTR_7g094990 | 47.826 | 138 | 69 | 2 | 3 | 137 | 70 | 207 | 2.37e-25 | 109 |
| MS.gene61804.t1 | MTR_7g094990 | 42.609 | 115 | 49 | 4 | 339 | 449 | 167 | 268 | 8.09e-16 | 80.5 |
| MS.gene61804.t1 | MTR_8g463880 | 47.619 | 84 | 44 | 0 | 6 | 89 | 64 | 147 | 7.44e-17 | 78.2 |
| MS.gene61804.t1 | MTR_7g056633 | 45.882 | 85 | 46 | 0 | 6 | 90 | 32 | 116 | 2.91e-15 | 73.6 |
| MS.gene61804.t1 | MTR_5g063300 | 45.679 | 81 | 44 | 0 | 11 | 91 | 55 | 135 | 1.77e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61804.t1 | AT5G41980 | 38.905 | 347 | 170 | 8 | 6 | 340 | 42 | 358 | 5.02e-66 | 221 |
| MS.gene61804.t1 | AT1G43722 | 36.434 | 258 | 145 | 6 | 5 | 246 | 65 | 319 | 2.28e-41 | 153 |
| MS.gene61804.t1 | AT5G35695 | 38.503 | 187 | 97 | 3 | 129 | 314 | 3 | 172 | 1.44e-33 | 128 |
| MS.gene61804.t1 | AT3G30525 | 35.443 | 158 | 96 | 2 | 113 | 264 | 1 | 158 | 2.17e-24 | 100 |
| MS.gene61804.t1 | AT5G28950 | 46.739 | 92 | 46 | 2 | 91 | 181 | 9 | 98 | 7.59e-20 | 87.0 |
| MS.gene61804.t1 | AT3G55350 | 31.959 | 194 | 102 | 6 | 108 | 282 | 182 | 364 | 5.17e-18 | 87.0 |
| MS.gene61804.t1 | AT5G12010 | 23.913 | 322 | 198 | 9 | 11 | 307 | 180 | 479 | 1.08e-15 | 80.9 |
| MS.gene61804.t1 | AT4G29780 | 25.229 | 218 | 139 | 6 | 108 | 312 | 322 | 528 | 7.46e-11 | 65.5 |
Find 122 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAGTTGTGGGTGTTTC+TGG | 0.116244 | 3.1:-21105656 | None:intergenic |
| GTCAAATTCATTGAACAAAT+TGG | 0.123596 | 3.1:+21105793 | MS.gene61804:CDS |
| AAAACAACCTAAACCAATTT+TGG | 0.140115 | 3.1:+21103978 | MS.gene61804:CDS |
| GGTCCAGGTGCAAGTGGTTT+TGG | 0.158436 | 3.1:+21105261 | MS.gene61804:CDS |
| TTCTCGACCAAATGGTTTAA+AGG | 0.180350 | 3.1:+21104230 | MS.gene61804:CDS |
| GATCCTTTGGAAATGAATTT+AGG | 0.216478 | 3.1:+21104639 | MS.gene61804:CDS |
| GTCGCAAAGGTTATTGTCTT+TGG | 0.283992 | 3.1:-21105978 | None:intergenic |
| AGAAATGACATTGGATCCTT+TGG | 0.284461 | 3.1:+21104626 | MS.gene61804:CDS |
| TCTGTGTTGCCCTCCAAAAT+TGG | 0.291608 | 3.1:-21103991 | None:intergenic |
| TGTGACATGTTGCAAGTTAT+TGG | 0.297963 | 3.1:+21103775 | MS.gene61804:CDS |
| GCATTTCAGTAATGTATTAT+TGG | 0.314714 | 3.1:+21103927 | MS.gene61804:CDS |
| TGATTAGAAGACAATTTGTT+AGG | 0.357825 | 3.1:+21103884 | MS.gene61804:CDS |
| AATTATTTACATGAGTGATT+TGG | 0.358633 | 3.1:+21103705 | None:intergenic |
| TTGCCCTCCAAAATTGGTTT+AGG | 0.360631 | 3.1:-21103985 | None:intergenic |
| AATGTAATAGAAAGATGTTT+TGG | 0.366224 | 3.1:+21104495 | MS.gene61804:CDS |
| TTCACTCTTGATTCAATATG+TGG | 0.370372 | 3.1:-21105198 | None:intergenic |
| ACATATATGAATTGTAAATC+TGG | 0.373490 | 3.1:-21104153 | None:intergenic |
| TGAGGAACCTTTAAACCATT+TGG | 0.379841 | 3.1:-21104237 | None:intergenic |
| TATCTACCTTTGTCAGCTTC+CGG | 0.382459 | 3.1:-21104081 | None:intergenic |
| TGGCTTGAGGAAGCGGTTTG+TGG | 0.384622 | 3.1:+21106024 | MS.gene61804:CDS |
| TCAAATTCATTGAACAAATT+GGG | 0.385007 | 3.1:+21105794 | MS.gene61804:CDS |
| AGAAGACAATTTGTTAGGTC+TGG | 0.394249 | 3.1:+21103889 | MS.gene61804:CDS |
| ACCAATACTCCATCTTCTTC+AGG | 0.398208 | 3.1:-21105048 | None:intergenic |
| TGATACCTTTGACCTCTATA+AGG | 0.398826 | 3.1:-21104396 | None:intergenic |
| ACCTGGGTACACTAAAGCTT+TGG | 0.401458 | 3.1:+21105128 | MS.gene61804:CDS |
| TATTATTATTTATGTGATGC+TGG | 0.401796 | 3.1:+21104345 | MS.gene61804:CDS |
| GTCGAGAAATAGCATCTCTA+AGG | 0.403893 | 3.1:-21104215 | None:intergenic |
| AACGTGATTCTACTAATTAT+AGG | 0.406136 | 3.1:+21105714 | MS.gene61804:CDS |
| CACAACTAACACTACTGATC+CGG | 0.408153 | 3.1:+21105667 | MS.gene61804:CDS |
| GGAAGGTTTGTTGAAATTAG+TGG | 0.408222 | 3.1:+21105071 | MS.gene61804:CDS |
| GATAGCTTGGATACTGTGTT+TGG | 0.409990 | 3.1:+21105485 | MS.gene61804:CDS |
| TCACGTTGTGGTTGGTTTGT+TGG | 0.419442 | 3.1:-21105698 | None:intergenic |
| AAGCTATCATAGTGTGGAAA+TGG | 0.420710 | 3.1:-21105470 | None:intergenic |
| TTCTGCAATCAAAGATATGT+TGG | 0.421190 | 3.1:+21105239 | MS.gene61804:CDS |
| TCAACACAAGAGGGCGGATC+AGG | 0.435640 | 3.1:+21105584 | MS.gene61804:CDS |
| GAGATAGCTACAAATGTGTT+AGG | 0.438755 | 3.1:+21104120 | MS.gene61804:CDS |
| AATTGTTTAGGAGCTCTTGA+TGG | 0.441154 | 3.1:+21104036 | MS.gene61804:CDS |
| GGATTTCTTACTCCTTATAG+AGG | 0.449800 | 3.1:+21104384 | MS.gene61804:CDS |
| TGAAATTAGTGGACGAGGGT+TGG | 0.454770 | 3.1:+21105082 | MS.gene61804:CDS |
| GCAACATGTCACATAGTTTG+TGG | 0.463824 | 3.1:-21103765 | None:intergenic |
| TTGGGTGAGATTTATGCTAA+TGG | 0.472566 | 3.1:+21105812 | MS.gene61804:CDS |
| ATACTCCTGGCTTGAGGAAG+CGG | 0.479782 | 3.1:+21106017 | MS.gene61804:CDS |
| GATGCTATTTCTCGACCAAA+TGG | 0.486765 | 3.1:+21104222 | MS.gene61804:CDS |
| CACCTTAGTGAGTGGAGGAA+TGG | 0.492062 | 3.1:+21104417 | MS.gene61804:CDS |
| TGGCTTGCGTTGAAAATACA+AGG | 0.493139 | 3.1:+21103725 | MS.gene61804:CDS |
| ATCCATTCCTCCACTCACTA+AGG | 0.493857 | 3.1:-21104419 | None:intergenic |
| CACCCAAAACCACTTGCACC+TGG | 0.494386 | 3.1:-21105264 | None:intergenic |
| TATATTCACAACAAATTCCC+AGG | 0.506595 | 3.1:+21105156 | MS.gene61804:CDS |
| ATTTCCACACTATGATAGCT+TGG | 0.519974 | 3.1:+21105472 | MS.gene61804:CDS |
| TGAAGAAGATGGAGTATTGG+TGG | 0.524039 | 3.1:+21105050 | MS.gene61804:CDS |
| TCCTGAAGAAGATGGAGTAT+TGG | 0.524913 | 3.1:+21105047 | MS.gene61804:CDS |
| CACCGTAGTTATCATGTCAC+TGG | 0.526044 | 3.1:-21104691 | None:intergenic |
| CAATGGACTCCTGAAGAAGA+TGG | 0.527689 | 3.1:+21105039 | MS.gene61804:CDS |
| TCACTCTTGATTCAATATGT+GGG | 0.528294 | 3.1:-21105197 | None:intergenic |
| AGAGACGGAGATTTATCGTC+TGG | 0.530482 | 3.1:+21105314 | MS.gene61804:CDS |
| GAAGATGGAGTATTGGTGGA+AGG | 0.531767 | 3.1:+21105054 | MS.gene61804:CDS |
| TCTGCAATCAAAGATATGTT+GGG | 0.532433 | 3.1:+21105240 | MS.gene61804:CDS |
| AGGTAGATATAGAACAAGGA+AGG | 0.535159 | 3.1:+21104095 | MS.gene61804:CDS |
| ATCAAAGATATGTTGGGTCC+AGG | 0.536960 | 3.1:+21105246 | MS.gene61804:CDS |
| ACAAACCGCTTCCTCAAGCC+AGG | 0.540000 | 3.1:-21106022 | None:intergenic |
| TTATACAAGCCAACTGCGGT+AGG | 0.541574 | 3.1:-21105443 | None:intergenic |
| GGTCTGGTGAAACGATTAGT+AGG | 0.541722 | 3.1:+21103905 | MS.gene61804:CDS |
| TCCAAAGCTTTAGTGTACCC+AGG | 0.543054 | 3.1:-21105129 | None:intergenic |
| GTCTGATGAAGAAGTGGTAA+TGG | 0.546068 | 3.1:+21105940 | MS.gene61804:CDS |
| ACGAGAAACACACAGCTGAT+AGG | 0.548293 | 3.1:+21105876 | MS.gene61804:CDS |
| ATTATAGGAACGGAAAGCGT+GGG | 0.548490 | 3.1:+21105729 | MS.gene61804:CDS |
| TGTGATGCTGGATACATGAA+TGG | 0.550292 | 3.1:+21104357 | MS.gene61804:CDS |
| GGATCAGTAGTGTTAGTTGT+GGG | 0.550588 | 3.1:-21105665 | None:intergenic |
| GATAAAGCAGATGGTACTGT+AGG | 0.551746 | 3.1:+21105512 | MS.gene61804:CDS |
| ACAACTAACACTACTGATCC+GGG | 0.552655 | 3.1:+21105668 | MS.gene61804:CDS |
| ATTAGTGGACGAGGGTTGGA+AGG | 0.552892 | 3.1:+21105086 | MS.gene61804:CDS |
| TCTCCTAAATTCATTTCCAA+AGG | 0.553553 | 3.1:-21104642 | None:intergenic |
| ATATGAAACATTCTTCAGCT+AGG | 0.555082 | 3.1:+21104472 | MS.gene61804:CDS |
| CATTGATATGACTATTGAGA+TGG | 0.555704 | 3.1:+21105544 | MS.gene61804:CDS |
| CACTCTTGATTCAATATGTG+GGG | 0.559793 | 3.1:-21105196 | None:intergenic |
| TTTGTTGAAATTAGTGGACG+AGG | 0.562026 | 3.1:+21105077 | MS.gene61804:CDS |
| GATGCAAACTCATTTAAACC+TGG | 0.563444 | 3.1:+21105111 | MS.gene61804:CDS |
| TCTTGATGGCACTTACATCA+AGG | 0.564289 | 3.1:+21104050 | MS.gene61804:CDS |
| TGGTTTGTTGGATTTGAACC+CGG | 0.568606 | 3.1:-21105686 | None:intergenic |
| AATTATAGGAACGGAAAGCG+TGG | 0.572400 | 3.1:+21105728 | MS.gene61804:CDS |
| GACATGTTGCAAGTTATTGG+TGG | 0.572683 | 3.1:+21103778 | MS.gene61804:CDS |
| TTACTCCTTATAGAGGTCAA+AGG | 0.573713 | 3.1:+21104391 | MS.gene61804:CDS |
| TAGTAGAATCACGTTGTGGT+TGG | 0.574703 | 3.1:-21105706 | None:intergenic |
| TATTCGCAAAGAAATGACAT+TGG | 0.576923 | 3.1:+21104617 | MS.gene61804:CDS |
| CGGATCAGTAGTGTTAGTTG+TGG | 0.577106 | 3.1:-21105666 | None:intergenic |
| ACACATGTGTGTGGAGGAGT+TGG | 0.585582 | 3.1:+21103816 | MS.gene61804:CDS |
| TTTGGAAAAGATAAAGCAGA+TGG | 0.586596 | 3.1:+21105503 | MS.gene61804:CDS |
| TATACAAGCCAACTGCGGTA+GGG | 0.587340 | 3.1:-21105442 | None:intergenic |
| TTGTTGAAATTAGTGGACGA+GGG | 0.590054 | 3.1:+21105078 | MS.gene61804:CDS |
| TTACATCAAGGTCAATGTGC+CGG | 0.590931 | 3.1:+21104062 | MS.gene61804:CDS |
| TAAGAATCACAAAGCGACAA+TGG | 0.591726 | 3.1:+21105022 | MS.gene61804:CDS |
| GCAGCTGATCCCTCCCAACC+AGG | 0.594468 | 3.1:-21104180 | None:intergenic |
| ATGCAAACTCATTTAAACCT+GGG | 0.599381 | 3.1:+21105112 | MS.gene61804:CDS |
| AAAGATGATTGTAGTAGAGA+CGG | 0.602628 | 3.1:+21105299 | MS.gene61804:CDS |
| ATGTTGGGTCCAGGTGCAAG+TGG | 0.603177 | 3.1:+21105255 | MS.gene61804:CDS |
| GATTCTACTAATTATAGGAA+CGG | 0.604046 | 3.1:+21105719 | MS.gene61804:CDS |
| CAATGGATACTCCTGGCTTG+AGG | 0.604084 | 3.1:+21106011 | MS.gene61804:CDS |
| GATGAAGAAGTGGTAATGGC+TGG | 0.607200 | 3.1:+21105944 | MS.gene61804:CDS |
| AATGGTTTAAAGGTTCCTCA+AGG | 0.609493 | 3.1:+21104240 | MS.gene61804:CDS |
| TATGACTATTGAGATGGAGA+AGG | 0.615365 | 3.1:+21105550 | MS.gene61804:CDS |
| CAGTCTCACCCTACCGCAGT+TGG | 0.617770 | 3.1:+21105434 | MS.gene61804:intron |
| AAAGGTATCACCTTAGTGAG+TGG | 0.618563 | 3.1:+21104409 | MS.gene61804:CDS |
| GGTAGATATAGAACAAGGAA+GGG | 0.618775 | 3.1:+21104096 | MS.gene61804:CDS |
| AAATGTTCAATCAACACAAG+AGG | 0.626386 | 3.1:+21105574 | MS.gene61804:CDS |
| AGAAACACACAGCTGATAGG+AGG | 0.626406 | 3.1:+21105879 | MS.gene61804:CDS |
| GCTGGATACATGAATGGAGA+AGG | 0.632475 | 3.1:+21104363 | MS.gene61804:CDS |
| TCCTACTCGACACATGTGTG+TGG | 0.639193 | 3.1:+21103807 | MS.gene61804:CDS |
| GGTATCACCTTAGTGAGTGG+AGG | 0.642466 | 3.1:+21104412 | MS.gene61804:CDS |
| AGGATTGTCTGATGAAGAAG+TGG | 0.642904 | 3.1:+21105934 | MS.gene61804:CDS |
| GTCCAGTGACATGATAACTA+CGG | 0.643301 | 3.1:+21104689 | MS.gene61804:CDS |
| TTATAGGAACGGAAAGCGTG+GGG | 0.650988 | 3.1:+21105730 | MS.gene61804:CDS |
| TACTCGACACATGTGTGTGG+AGG | 0.653616 | 3.1:+21103810 | MS.gene61804:CDS |
| AATGTTCAATCAACACAAGA+GGG | 0.654380 | 3.1:+21105575 | MS.gene61804:CDS |
| TTGCGTTGAAAATACAAGGA+TGG | 0.654392 | 3.1:+21103729 | MS.gene61804:CDS |
| AGGGCAACACAGACGAACGA+TGG | 0.667738 | 3.1:+21104001 | MS.gene61804:CDS |
| GTATCCAAGCTATCATAGTG+TGG | 0.667913 | 3.1:-21105476 | None:intergenic |
| TAATTAGTAGAATCACGTTG+TGG | 0.667964 | 3.1:-21105710 | None:intergenic |
| TCCACACACATGTGTCGAGT+AGG | 0.675300 | 3.1:-21103808 | None:intergenic |
| AATGTGCCGGAAGCTGACAA+AGG | 0.679136 | 3.1:+21104075 | MS.gene61804:CDS |
| ACAAAGGTAGATATAGAACA+AGG | 0.691343 | 3.1:+21104091 | MS.gene61804:CDS |
| GTTCAATCAACACAAGAGGG+CGG | 0.700627 | 3.1:+21105578 | MS.gene61804:CDS |
| TATAGGAACGGAAAGCGTGG+GGG | 0.729484 | 3.1:+21105731 | MS.gene61804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAGATATATTTAAT+AGG | + | chr3.1:21104751-21104770 | MS.gene61804:intron | 10.0% |
| !!! | AAATACTTTAAAAATTGTTT+AGG | + | chr3.1:21104024-21104043 | MS.gene61804:CDS | 10.0% |
| !! | TTCATATTGAAAAATTCTTT+AGG | - | chr3.1:21104459-21104478 | None:intergenic | 15.0% |
| !!! | ACTTCAATTTTATTTATGAT+AGG | + | chr3.1:21104321-21104340 | MS.gene61804:intron | 15.0% |
| !!! | CTTCAATTTTATTTATGATA+GGG | + | chr3.1:21104322-21104341 | MS.gene61804:intron | 15.0% |
| !!! | TCTATTTTAAAAGAAATTGA+AGG | + | chr3.1:21105914-21105933 | MS.gene61804:CDS | 15.0% |
| !! | ACATATATGAATTGTAAATC+TGG | - | chr3.1:21104156-21104175 | None:intergenic | 20.0% |
| !! | CATTAGATATATTTAATAGG+TGG | + | chr3.1:21104754-21104773 | MS.gene61804:intron | 20.0% |
| !! | TATCATGAATTTATCAATTG+TGG | - | chr3.1:21105366-21105385 | None:intergenic | 20.0% |
| !! | TATTATTATTTATGTGATGC+TGG | + | chr3.1:21104345-21104364 | MS.gene61804:CDS | 20.0% |
| !! | TCAAATTCATTGAACAAATT+GGG | + | chr3.1:21105794-21105813 | MS.gene61804:CDS | 20.0% |
| !!! | AATGTAATAGAAAGATGTTT+TGG | + | chr3.1:21104495-21104514 | MS.gene61804:CDS | 20.0% |
| !!! | CTTTTAAAATAGAGACAATT+TGG | - | chr3.1:21105907-21105926 | None:intergenic | 20.0% |
| ! | AACGTGATTCTACTAATTAT+AGG | + | chr3.1:21105714-21105733 | MS.gene61804:CDS | 25.0% |
| ! | GATTCTACTAATTATAGGAA+CGG | + | chr3.1:21105719-21105738 | MS.gene61804:CDS | 25.0% |
| ! | GCATTTCAGTAATGTATTAT+TGG | + | chr3.1:21103927-21103946 | MS.gene61804:CDS | 25.0% |
| ! | GTCAAATTCATTGAACAAAT+TGG | + | chr3.1:21105793-21105812 | MS.gene61804:CDS | 25.0% |
| ! | TGCCAATATATGTAAAAACA+TGG | - | chr3.1:21103845-21103864 | None:intergenic | 25.0% |
| !! | AAAAATTCTTTAGGAGTAGA+TGG | - | chr3.1:21104450-21104469 | None:intergenic | 25.0% |
| !! | AAAACAACCTAAACCAATTT+TGG | + | chr3.1:21103978-21103997 | MS.gene61804:CDS | 25.0% |
| !! | AGCATATTTTGCATAGTTTA+TGG | + | chr3.1:21104292-21104311 | MS.gene61804:intron | 25.0% |
| !! | ATTTATACTTTTGTACCTTG+AGG | - | chr3.1:21104258-21104277 | None:intergenic | 25.0% |
| !! | TGATTAGAAGACAATTTGTT+AGG | + | chr3.1:21103884-21103903 | MS.gene61804:CDS | 25.0% |
| !! | TTTTATCCTGTAAAAACTCA+AGG | + | chr3.1:21104558-21104577 | MS.gene61804:CDS | 25.0% |
| AAAGATGATTGTAGTAGAGA+CGG | + | chr3.1:21105299-21105318 | MS.gene61804:CDS | 30.0% | |
| AAATGTTCAATCAACACAAG+AGG | + | chr3.1:21105574-21105593 | MS.gene61804:CDS | 30.0% | |
| AATGTTCAATCAACACAAGA+GGG | + | chr3.1:21105575-21105594 | MS.gene61804:CDS | 30.0% | |
| ACAAAGGTAGATATAGAACA+AGG | + | chr3.1:21104091-21104110 | MS.gene61804:CDS | 30.0% | |
| ATATGAAACATTCTTCAGCT+AGG | + | chr3.1:21104472-21104491 | MS.gene61804:CDS | 30.0% | |
| ATGCAAACTCATTTAAACCT+GGG | + | chr3.1:21105112-21105131 | MS.gene61804:CDS | 30.0% | |
| CATTGATATGACTATTGAGA+TGG | + | chr3.1:21105544-21105563 | MS.gene61804:CDS | 30.0% | |
| GATATATTTAATAGGTGGAG+AGG | + | chr3.1:21104759-21104778 | MS.gene61804:intron | 30.0% | |
| TAATTAGTAGAATCACGTTG+TGG | - | chr3.1:21105713-21105732 | None:intergenic | 30.0% | |
| TATATTCACAACAAATTCCC+AGG | + | chr3.1:21105156-21105175 | MS.gene61804:CDS | 30.0% | |
| TATTCGCAAAGAAATGACAT+TGG | + | chr3.1:21104617-21104636 | MS.gene61804:CDS | 30.0% | |
| TCACTCTTGATTCAATATGT+GGG | - | chr3.1:21105200-21105219 | None:intergenic | 30.0% | |
| TCTCCTAAATTCATTTCCAA+AGG | - | chr3.1:21104645-21104664 | None:intergenic | 30.0% | |
| TCTGCAATCAAAGATATGTT+GGG | + | chr3.1:21105240-21105259 | MS.gene61804:CDS | 30.0% | |
| TTCACTCTTGATTCAATATG+TGG | - | chr3.1:21105201-21105220 | None:intergenic | 30.0% | |
| TTCTGCAATCAAAGATATGT+TGG | + | chr3.1:21105239-21105258 | MS.gene61804:CDS | 30.0% | |
| TTGTGAAAAAATAGTCGCAA+AGG | - | chr3.1:21105994-21106013 | None:intergenic | 30.0% | |
| TTTGGAAAAGATAAAGCAGA+TGG | + | chr3.1:21105503-21105522 | MS.gene61804:CDS | 30.0% | |
| ! | ATTCTTCCTTGAGTTTTTAC+AGG | - | chr3.1:21104567-21104586 | None:intergenic | 30.0% |
| ! | CAATTCATATATGTTTTGCC+TGG | + | chr3.1:21104162-21104181 | MS.gene61804:CDS | 30.0% |
| ! | GATCCTTTGGAAATGAATTT+AGG | + | chr3.1:21104639-21104658 | MS.gene61804:CDS | 30.0% |
| ! | TTGTTGAGTTGTTGAATAGA+TGG | + | chr3.1:21104975-21104994 | MS.gene61804:intron | 30.0% |
| !! | AGATGTTTTGGACTTTTGAA+AGG | + | chr3.1:21104507-21104526 | MS.gene61804:CDS | 30.0% |
| !! | CGCCATGTTTTTACATATAT+TGG | + | chr3.1:21103840-21103859 | MS.gene61804:CDS | 30.0% |
| !! | TTTTGAGTAACAATGGTTCT+AGG | + | chr3.1:21106053-21106072 | MS.gene61804:CDS | 30.0% |
| !!! | GACATTGTTTTGAGTAACAA+TGG | + | chr3.1:21106046-21106065 | MS.gene61804:CDS | 30.0% |
| !!! | TTGCGACTATTTTTTCACAA+TGG | + | chr3.1:21105994-21106013 | MS.gene61804:CDS | 30.0% |
| !!! | TTTTTTATACAAGCCAACTG+CGG | - | chr3.1:21105450-21105469 | None:intergenic | 30.0% |
| AAGCTATCATAGTGTGGAAA+TGG | - | chr3.1:21105473-21105492 | None:intergenic | 35.0% | |
| AATGGTTTAAAGGTTCCTCA+AGG | + | chr3.1:21104240-21104259 | MS.gene61804:CDS | 35.0% | |
| AATTGTTTAGGAGCTCTTGA+TGG | + | chr3.1:21104036-21104055 | MS.gene61804:CDS | 35.0% | |
| AGAAATGACATTGGATCCTT+TGG | + | chr3.1:21104626-21104645 | MS.gene61804:CDS | 35.0% | |
| AGGTAGATATAGAACAAGGA+AGG | + | chr3.1:21104095-21104114 | MS.gene61804:CDS | 35.0% | |
| ATATTTAATAGGTGGAGAGG+TGG | + | chr3.1:21104762-21104781 | MS.gene61804:intron | 35.0% | |
| ATTTCCACACTATGATAGCT+TGG | + | chr3.1:21105472-21105491 | MS.gene61804:CDS | 35.0% | |
| CACTCTTGATTCAATATGTG+GGG | - | chr3.1:21105199-21105218 | None:intergenic | 35.0% | |
| GAGATAGCTACAAATGTGTT+AGG | + | chr3.1:21104120-21104139 | MS.gene61804:CDS | 35.0% | |
| GATGCAAACTCATTTAAACC+TGG | + | chr3.1:21105111-21105130 | MS.gene61804:CDS | 35.0% | |
| GGATTTCTTACTCCTTATAG+AGG | + | chr3.1:21104384-21104403 | MS.gene61804:CDS | 35.0% | |
| GGTAGATATAGAACAAGGAA+GGG | + | chr3.1:21104096-21104115 | MS.gene61804:CDS | 35.0% | |
| TAAGAATCACAAAGCGACAA+TGG | + | chr3.1:21105022-21105041 | MS.gene61804:CDS | 35.0% | |
| TATGACTATTGAGATGGAGA+AGG | + | chr3.1:21105550-21105569 | MS.gene61804:CDS | 35.0% | |
| TGAGGAACCTTTAAACCATT+TGG | - | chr3.1:21104240-21104259 | None:intergenic | 35.0% | |
| TGATACCTTTGACCTCTATA+AGG | - | chr3.1:21104399-21104418 | None:intergenic | 35.0% | |
| TGTGACATGTTGCAAGTTAT+TGG | + | chr3.1:21103775-21103794 | MS.gene61804:CDS | 35.0% | |
| TTACTCCTTATAGAGGTCAA+AGG | + | chr3.1:21104391-21104410 | MS.gene61804:CDS | 35.0% | |
| TTCTCGACCAAATGGTTTAA+AGG | + | chr3.1:21104230-21104249 | MS.gene61804:CDS | 35.0% | |
| TTGCGTTGAAAATACAAGGA+TGG | + | chr3.1:21103729-21103748 | MS.gene61804:CDS | 35.0% | |
| TTGGGTGAGATTTATGCTAA+TGG | + | chr3.1:21105812-21105831 | MS.gene61804:CDS | 35.0% | |
| ! | ACAACCTAAACCAATTTTGG+AGG | + | chr3.1:21103981-21104000 | MS.gene61804:CDS | 35.0% |
| ! | CAACCTAAACCAATTTTGGA+GGG | + | chr3.1:21103982-21104001 | MS.gene61804:CDS | 35.0% |
| ! | CATATATGTTTTGCCTGGTT+GGG | + | chr3.1:21104167-21104186 | MS.gene61804:CDS | 35.0% |
| ! | TCATATATGTTTTGCCTGGT+TGG | + | chr3.1:21104166-21104185 | MS.gene61804:CDS | 35.0% |
| ! | TTGTTGAAATTAGTGGACGA+GGG | + | chr3.1:21105078-21105097 | MS.gene61804:CDS | 35.0% |
| ! | TTTGTTGAAATTAGTGGACG+AGG | + | chr3.1:21105077-21105096 | MS.gene61804:CDS | 35.0% |
| ! | TTTTTCACAATGGATACTCC+TGG | + | chr3.1:21106004-21106023 | MS.gene61804:CDS | 35.0% |
| !! | AGAAGACAATTTGTTAGGTC+TGG | + | chr3.1:21103889-21103908 | MS.gene61804:CDS | 35.0% |
| !! | GGAAGGTTTGTTGAAATTAG+TGG | + | chr3.1:21105071-21105090 | MS.gene61804:CDS | 35.0% |
| AATTATAGGAACGGAAAGCG+TGG | + | chr3.1:21105728-21105747 | MS.gene61804:CDS | 40.0% | |
| ACAACTAACACTACTGATCC+GGG | + | chr3.1:21105668-21105687 | MS.gene61804:CDS | 40.0% | |
| ACCAATACTCCATCTTCTTC+AGG | - | chr3.1:21105051-21105070 | None:intergenic | 40.0% | |
| AGGATTGTCTGATGAAGAAG+TGG | + | chr3.1:21105934-21105953 | MS.gene61804:CDS | 40.0% | |
| ATCAAAGATATGTTGGGTCC+AGG | + | chr3.1:21105246-21105265 | MS.gene61804:CDS | 40.0% | |
| CACAACTAACACTACTGATC+CGG | + | chr3.1:21105667-21105686 | MS.gene61804:CDS | 40.0% | |
| GACATGTTGCAAGTTATTGG+TGG | + | chr3.1:21103778-21103797 | MS.gene61804:CDS | 40.0% | |
| GATAAAGCAGATGGTACTGT+AGG | + | chr3.1:21105512-21105531 | MS.gene61804:CDS | 40.0% | |
| GATAGCTTGGATACTGTGTT+TGG | + | chr3.1:21105485-21105504 | MS.gene61804:CDS | 40.0% | |
| GCAACATGTCACATAGTTTG+TGG | - | chr3.1:21103768-21103787 | None:intergenic | 40.0% | |
| GGATCAGTAGTGTTAGTTGT+GGG | - | chr3.1:21105668-21105687 | None:intergenic | 40.0% | |
| GTATCCAAGCTATCATAGTG+TGG | - | chr3.1:21105479-21105498 | None:intergenic | 40.0% | |
| GTCCAGTGACATGATAACTA+CGG | + | chr3.1:21104689-21104708 | MS.gene61804:CDS | 40.0% | |
| GTCGAGAAATAGCATCTCTA+AGG | - | chr3.1:21104218-21104237 | None:intergenic | 40.0% | |
| GTCGCAAAGGTTATTGTCTT+TGG | - | chr3.1:21105981-21106000 | None:intergenic | 40.0% | |
| GTCTGATGAAGAAGTGGTAA+TGG | + | chr3.1:21105940-21105959 | MS.gene61804:CDS | 40.0% | |
| TAGTAGAATCACGTTGTGGT+TGG | - | chr3.1:21105709-21105728 | None:intergenic | 40.0% | |
| TATCTACCTTTGTCAGCTTC+CGG | - | chr3.1:21104084-21104103 | None:intergenic | 40.0% | |
| TCCTGAAGAAGATGGAGTAT+TGG | + | chr3.1:21105047-21105066 | MS.gene61804:CDS | 40.0% | |
| TGTGATGCTGGATACATGAA+TGG | + | chr3.1:21104357-21104376 | MS.gene61804:CDS | 40.0% | |
| TTACATCAAGGTCAATGTGC+CGG | + | chr3.1:21104062-21104081 | MS.gene61804:CDS | 40.0% | |
| ! | ATTATAGGAACGGAAAGCGT+GGG | + | chr3.1:21105729-21105748 | MS.gene61804:CDS | 40.0% |
| ! | TAGCTTTTAGTGTGCAACCT+GGG | - | chr3.1:21105176-21105195 | None:intergenic | 40.0% |
| ! | TCTTGATGGCACTTACATCA+AGG | + | chr3.1:21104050-21104069 | MS.gene61804:CDS | 40.0% |
| ! | TGGCTTGCGTTGAAAATACA+AGG | + | chr3.1:21103725-21103744 | MS.gene61804:CDS | 40.0% |
| ! | TTGCCCTCCAAAATTGGTTT+AGG | - | chr3.1:21103988-21104007 | None:intergenic | 40.0% |
| !! | AAAGGTATCACCTTAGTGAG+TGG | + | chr3.1:21104409-21104428 | MS.gene61804:CDS | 40.0% |
| !! | GATGCTATTTCTCGACCAAA+TGG | + | chr3.1:21104222-21104241 | MS.gene61804:CDS | 40.0% |
| !! | TGAAGAAGATGGAGTATTGG+TGG | + | chr3.1:21105050-21105069 | MS.gene61804:CDS | 40.0% |
| !! | TGGACTTTTGAAAGGACGTT+GGG | + | chr3.1:21104515-21104534 | MS.gene61804:CDS | 40.0% |
| !! | TGGTTTGTTGGATTTGAACC+CGG | - | chr3.1:21105689-21105708 | None:intergenic | 40.0% |
| !! | TTGGACTTTTGAAAGGACGT+TGG | + | chr3.1:21104514-21104533 | MS.gene61804:CDS | 40.0% |
| ACCTGGGTACACTAAAGCTT+TGG | + | chr3.1:21105128-21105147 | MS.gene61804:CDS | 45.0% | |
| ACGAGAAACACACAGCTGAT+AGG | + | chr3.1:21105876-21105895 | MS.gene61804:CDS | 45.0% | |
| AGAAACACACAGCTGATAGG+AGG | + | chr3.1:21105879-21105898 | MS.gene61804:CDS | 45.0% | |
| AGAGACGGAGATTTATCGTC+TGG | + | chr3.1:21105314-21105333 | MS.gene61804:CDS | 45.0% | |
| ATCCATTCCTCCACTCACTA+AGG | - | chr3.1:21104422-21104441 | None:intergenic | 45.0% | |
| CAAGTACGACATGGAGTCAA+TGG | + | chr3.1:21104718-21104737 | MS.gene61804:intron | 45.0% | |
| CACCGTAGTTATCATGTCAC+TGG | - | chr3.1:21104694-21104713 | None:intergenic | 45.0% | |
| CAGTGACATGATAACTACGG+TGG | + | chr3.1:21104692-21104711 | MS.gene61804:intron | 45.0% | |
| CGGATCAGTAGTGTTAGTTG+TGG | - | chr3.1:21105669-21105688 | None:intergenic | 45.0% | |
| GAGATTTATCGTCTGGTGCA+AGG | + | chr3.1:21105321-21105340 | MS.gene61804:intron | 45.0% | |
| GCTGGATACATGAATGGAGA+AGG | + | chr3.1:21104363-21104382 | MS.gene61804:CDS | 45.0% | |
| GGTCTGGTGAAACGATTAGT+AGG | + | chr3.1:21103905-21103924 | MS.gene61804:CDS | 45.0% | |
| GTGTTAGTTGTGGGTGTTTC+TGG | - | chr3.1:21105659-21105678 | None:intergenic | 45.0% | |
| GTTCAATCAACACAAGAGGG+CGG | + | chr3.1:21105578-21105597 | MS.gene61804:CDS | 45.0% | |
| TATACAAGCCAACTGCGGTA+GGG | - | chr3.1:21105445-21105464 | None:intergenic | 45.0% | |
| TCTGTGTTGCCCTCCAAAAT+TGG | - | chr3.1:21103994-21104013 | None:intergenic | 45.0% | |
| TTATACAAGCCAACTGCGGT+AGG | - | chr3.1:21105446-21105465 | None:intergenic | 45.0% | |
| ! | ATATGTTTTGCCTGGTTGGG+AGG | + | chr3.1:21104170-21104189 | MS.gene61804:CDS | 45.0% |
| ! | CAATGGACTCCTGAAGAAGA+TGG | + | chr3.1:21105039-21105058 | MS.gene61804:CDS | 45.0% |
| ! | GTAGCTTTTAGTGTGCAACC+TGG | - | chr3.1:21105177-21105196 | None:intergenic | 45.0% |
| ! | TATGTTTTGCCTGGTTGGGA+GGG | + | chr3.1:21104171-21104190 | MS.gene61804:CDS | 45.0% |
| ! | TCCAAAGCTTTAGTGTACCC+AGG | - | chr3.1:21105132-21105151 | None:intergenic | 45.0% |
| ! | TGAAATTAGTGGACGAGGGT+TGG | + | chr3.1:21105082-21105101 | MS.gene61804:CDS | 45.0% |
| ! | TTATAGGAACGGAAAGCGTG+GGG | + | chr3.1:21105730-21105749 | MS.gene61804:CDS | 45.0% |
| !! | CATTGACTCCATGTCGTACT+TGG | - | chr3.1:21104720-21104739 | None:intergenic | 45.0% |
| !! | GAAGATGGAGTATTGGTGGA+AGG | + | chr3.1:21105054-21105073 | MS.gene61804:CDS | 45.0% |
| !! | GATGAAGAAGTGGTAATGGC+TGG | + | chr3.1:21105944-21105963 | MS.gene61804:CDS | 45.0% |
| !! | TCACGTTGTGGTTGGTTTGT+TGG | - | chr3.1:21105701-21105720 | None:intergenic | 45.0% |
| AATGTGCCGGAAGCTGACAA+AGG | + | chr3.1:21104075-21104094 | MS.gene61804:CDS | 50.0% | |
| ACACATGTGTGTGGAGGAGT+TGG | + | chr3.1:21103816-21103835 | MS.gene61804:CDS | 50.0% | |
| CACCTTAGTGAGTGGAGGAA+TGG | + | chr3.1:21104417-21104436 | MS.gene61804:CDS | 50.0% | |
| GGTATCACCTTAGTGAGTGG+AGG | + | chr3.1:21104412-21104431 | MS.gene61804:CDS | 50.0% | |
| GTAGGGTGAGACTGCGTTAA+AGG | - | chr3.1:21105428-21105447 | None:intergenic | 50.0% | |
| TACTCGACACATGTGTGTGG+AGG | + | chr3.1:21103810-21103829 | MS.gene61804:CDS | 50.0% | |
| TCCACACACATGTGTCGAGT+AGG | - | chr3.1:21103811-21103830 | None:intergenic | 50.0% | |
| TCCTACTCGACACATGTGTG+TGG | + | chr3.1:21103807-21103826 | MS.gene61804:CDS | 50.0% | |
| ! | ATACTCCTGGCTTGAGGAAG+CGG | + | chr3.1:21106017-21106036 | MS.gene61804:CDS | 50.0% |
| ! | ATTAGTGGACGAGGGTTGGA+AGG | + | chr3.1:21105086-21105105 | MS.gene61804:CDS | 50.0% |
| ! | CAATGGATACTCCTGGCTTG+AGG | + | chr3.1:21106011-21106030 | MS.gene61804:CDS | 50.0% |
| ! | GTCCAGGTGCAAGTGGTTTT+GGG | + | chr3.1:21105262-21105281 | MS.gene61804:CDS | 50.0% |
| ! | TATAGGAACGGAAAGCGTGG+GGG | + | chr3.1:21105731-21105750 | MS.gene61804:CDS | 50.0% |
| ACAAACCGCTTCCTCAAGCC+AGG | - | chr3.1:21106025-21106044 | None:intergenic | 55.0% | |
| AGGGCAACACAGACGAACGA+TGG | + | chr3.1:21104001-21104020 | MS.gene61804:CDS | 55.0% | |
| ATGTTGGGTCCAGGTGCAAG+TGG | + | chr3.1:21105255-21105274 | MS.gene61804:CDS | 55.0% | |
| CACCCAAAACCACTTGCACC+TGG | - | chr3.1:21105267-21105286 | None:intergenic | 55.0% | |
| TCAACACAAGAGGGCGGATC+AGG | + | chr3.1:21105584-21105603 | MS.gene61804:CDS | 55.0% | |
| TGGCTTGAGGAAGCGGTTTG+TGG | + | chr3.1:21106024-21106043 | MS.gene61804:CDS | 55.0% | |
| ! | ACGGAAAGCGTGGGGGAAAA+AGG | + | chr3.1:21105738-21105757 | MS.gene61804:CDS | 55.0% |
| ! | CGGAAAGCGTGGGGGAAAAA+GGG | + | chr3.1:21105739-21105758 | MS.gene61804:CDS | 55.0% |
| ! | GGTCCAGGTGCAAGTGGTTT+TGG | + | chr3.1:21105261-21105280 | MS.gene61804:CDS | 55.0% |
| !!! | CAGGTGCAAGTGGTTTTGGG+TGG | + | chr3.1:21105265-21105284 | MS.gene61804:CDS | 55.0% |
| CAGTCTCACCCTACCGCAGT+TGG | + | chr3.1:21105434-21105453 | MS.gene61804:intron | 60.0% | |
| CGGTGGAGCCAAGTACGACA+TGG | + | chr3.1:21104709-21104728 | MS.gene61804:intron | 60.0% | |
| GCAGCTGATCCCTCCCAACC+AGG | - | chr3.1:21104183-21104202 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 21103715 | 21106078 | 21103715 | ID=MS.gene61804 |
| chr3.1 | mRNA | 21103715 | 21106078 | 21103715 | ID=MS.gene61804.t1;Parent=MS.gene61804 |
| chr3.1 | exon | 21103715 | 21104261 | 21103715 | ID=MS.gene61804.t1.exon1;Parent=MS.gene61804.t1 |
| chr3.1 | CDS | 21103715 | 21104261 | 21103715 | ID=cds.MS.gene61804.t1;Parent=MS.gene61804.t1 |
| chr3.1 | exon | 21104343 | 21104710 | 21104343 | ID=MS.gene61804.t1.exon2;Parent=MS.gene61804.t1 |
| chr3.1 | CDS | 21104343 | 21104710 | 21104343 | ID=cds.MS.gene61804.t1;Parent=MS.gene61804.t1 |
| chr3.1 | exon | 21104994 | 21105335 | 21104994 | ID=MS.gene61804.t1.exon3;Parent=MS.gene61804.t1 |
| chr3.1 | CDS | 21104994 | 21105335 | 21104994 | ID=cds.MS.gene61804.t1;Parent=MS.gene61804.t1 |
| chr3.1 | exon | 21105437 | 21106078 | 21105437 | ID=MS.gene61804.t1.exon4;Parent=MS.gene61804.t1 |
| chr3.1 | CDS | 21105437 | 21106078 | 21105437 | ID=cds.MS.gene61804.t1;Parent=MS.gene61804.t1 |
| Gene Sequence |
| Protein sequence |
