AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61873


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61873.t1 MTR_3g030040 90.769 325 4 1 1 299 13 337 0.0 613
MS.gene61873.t1 MTR_8g037260 68.196 327 74 4 1 299 13 337 4.66e-142 431
MS.gene61873.t1 MTR_7g106680 54.769 325 80 5 1 299 12 295 2.04e-105 333
MS.gene61873.t1 MTR_1g098550 40.419 334 147 8 4 299 38 357 3.95e-66 227
MS.gene61873.t1 MTR_1g098550 40.419 334 147 8 4 299 34 353 5.17e-66 226
MS.gene61873.t1 MTR_8g092590 41.071 336 150 8 1 299 31 355 3.74e-63 218
MS.gene61873.t1 MTR_3g107520 39.759 332 151 7 1 299 32 347 1.18e-60 211
MS.gene61873.t1 MTR_4g130510 40.181 331 124 11 1 299 29 317 8.60e-59 203
MS.gene61873.t1 MTR_4g130510 40.181 331 124 11 1 299 29 317 4.16e-58 202
MS.gene61873.t1 MTR_4g130510 40.181 331 124 11 1 299 29 317 6.26e-58 203
MS.gene61873.t1 MTR_4g130510 40.181 331 124 11 1 299 29 317 6.70e-58 203
MS.gene61873.t1 MTR_2g035780 34.891 321 118 6 6 300 34 289 2.07e-53 190
MS.gene61873.t1 MTR_3g007770 34.557 327 133 8 1 299 31 304 3.37e-48 175
MS.gene61873.t1 MTR_3g436010 31.858 226 123 5 1 208 29 241 2.39e-24 100
MS.gene61873.t1 MTR_8g063270 62.687 67 25 0 1 67 29 95 3.63e-24 105
MS.gene61873.t1 MTR_8g063270 40.566 106 37 1 221 300 167 272 7.47e-20 92.0
MS.gene61873.t1 MTR_3g436010 31.858 226 123 5 1 208 29 241 5.35e-24 101
MS.gene61873.t1 MTR_1g069605 48.515 101 25 2 226 300 79 178 1.19e-19 91.3
MS.gene61873.t1 MTR_6g053420 58.696 46 19 0 310 355 25 70 6.80e-13 63.9
MS.gene61873.t1 MTR_8g086600 42.222 90 26 1 237 300 174 263 1.44e-12 69.7
MS.gene61873.t1 MTR_2g016630 30.822 146 61 3 186 300 112 248 2.30e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61873.t1 AT5G05170 65.031 326 75 7 1 299 12 325 2.64e-137 418
MS.gene61873.t1 AT4G32410 39.940 333 144 11 1 299 31 341 1.02e-61 214
MS.gene61873.t1 AT5G17420 41.718 326 113 10 1 299 29 304 4.54e-61 212
MS.gene61873.t1 AT5G09870 41.033 329 135 10 1 299 31 330 3.01e-59 207
MS.gene61873.t1 AT5G64740 40.060 332 146 9 1 299 31 342 5.66e-58 204
MS.gene61873.t1 AT2G25540 38.957 326 143 12 1 299 25 321 9.08e-58 203
MS.gene61873.t1 AT4G39350 40.606 330 148 7 1 299 31 343 2.29e-56 199
MS.gene61873.t1 AT2G21770 39.645 338 139 10 4 299 34 348 5.25e-54 192
MS.gene61873.t1 AT5G44030 34.969 326 153 8 3 300 17 311 7.45e-51 183
MS.gene61873.t1 AT5G44030 34.769 325 126 9 3 300 17 282 2.94e-48 176
MS.gene61873.t1 AT4G18780 37.063 143 61 3 186 300 110 251 1.99e-14 75.5
MS.gene61873.t1 AT4G18780 42.857 56 32 0 6 61 6 61 7.99e-11 64.3

Find 102 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTTCCTTATCATAATT+TGG 0.223992 3.1:-21987321 None:intergenic
CGGTTCACAGGAAGCCATTT+GGG 0.250743 3.1:-21988365 None:intergenic
CGTTTCCCGCGAGCATTTAC+AGG 0.254624 3.1:-21987541 None:intergenic
ATCTGGACAGGCTTTCATTA+AGG 0.281091 3.1:+21988396 MS.gene61873:CDS
TCAGGTAGTCCTGCAATTCT+TGG 0.322057 3.1:+21987156 MS.gene61873:intron
TGCTTTCAAGTGGGAAGTTA+AGG 0.332270 3.1:+21988902 MS.gene61873:CDS
GTTCTTTGATTGTATCGTTT+TGG 0.349631 3.1:-21989093 None:intergenic
TATCTTCTATTTCAGACATC+TGG 0.352560 3.1:+21987475 MS.gene61873:intron
AATATCGGTAGTGCTGTTAA+TGG 0.364635 3.1:+21986438 MS.gene61873:CDS
AGGTTTCTATTCCATCTTCT+AGG 0.371247 3.1:+21988183 MS.gene61873:CDS
TTTGTGCCTTCCCTGTTTGT+AGG 0.371602 3.1:+21986484 MS.gene61873:CDS
TCACGATCTCCAAGAATTGC+AGG 0.374891 3.1:-21987165 None:intergenic
TCATAACACGGCCTACAAAC+AGG 0.377206 3.1:-21986495 None:intergenic
TGAATTGTACTTGAAATCAT+TGG 0.378809 3.1:-21987214 None:intergenic
TGTGAACCGTGAAACATATC+TGG 0.394605 3.1:+21988379 MS.gene61873:CDS
GCTACTTCTGAAAGAGGAAT+AGG 0.394800 3.1:+21987815 MS.gene61873:CDS
TTCCCTATGCAGCAAACATC+AGG 0.396400 3.1:+21987690 MS.gene61873:intron
ACGGTTCACAGGAAGCCATT+TGG 0.408365 3.1:-21988366 None:intergenic
TGGGTACGGGATTTGTAATT+CGG 0.409998 3.1:-21988268 None:intergenic
CAGGGTTGCTGAACCAGGAT+TGG 0.428474 3.1:+21987709 MS.gene61873:CDS
GCCAAGTCTGTCAGATTTGT+GGG 0.437505 3.1:+21986412 MS.gene61873:CDS
GCCTGTCCAGATATGTTTCA+CGG 0.447132 3.1:-21988385 None:intergenic
AATCACATTCCTCGGCTAAC+CGG 0.449192 3.1:+21987348 MS.gene61873:CDS
CAGATTTGTGGGGATAATAT+CGG 0.451217 3.1:+21986423 MS.gene61873:CDS
GTAGCTTGACCTGTGCTCAT+TGG 0.461895 3.1:-21987797 None:intergenic
CAAGCTACATTACCCAATCC+TGG 0.473128 3.1:-21987722 None:intergenic
ATCGAAAAGCACATCAGTAC+TGG 0.474835 3.1:-21987849 None:intergenic
GTCGATGTTAGCTGATGTTA+TGG 0.475818 3.1:+21989037 MS.gene61873:CDS
AGCCAAGTCTGTCAGATTTG+TGG 0.476029 3.1:+21986411 MS.gene61873:CDS
AGGGTTGCTGAACCAGGATT+GGG 0.479793 3.1:+21987710 MS.gene61873:CDS
AAGCTCGACAACCACTTTCG+AGG 0.485682 3.1:+21988159 MS.gene61873:CDS
TGGCTACCCAACGTCTTCAT+CGG 0.486520 3.1:-21986393 None:intergenic
TATTGGATCAGTTCCCCAAA+TGG 0.492173 3.1:+21988351 MS.gene61873:intron
TATGGCGATAGCGGAAGTTA+AGG 0.493012 3.1:+21989055 MS.gene61873:CDS
ACGCATGTTGAGTTGGCAAA+TGG 0.496488 3.1:+21987269 MS.gene61873:CDS
AACATCAGGGTTGCTGAACC+AGG 0.497336 3.1:+21987704 MS.gene61873:CDS
TATGAGTACGAAAGGAAAGA+TGG 0.503212 3.1:+21986513 MS.gene61873:CDS
TATGGATTTATCCTAGAAGA+TGG 0.506219 3.1:-21988194 None:intergenic
CAGGATTGGGTAATGTAGCT+TGG 0.512080 3.1:+21987723 MS.gene61873:CDS
AGATATGTTTCACGGTTCAC+AGG 0.516002 3.1:-21988377 None:intergenic
AAATTATGAGGACTTGTGAT+TGG 0.516039 3.1:-21989123 None:intergenic
TGATGCTCCAAATTATGATA+AGG 0.517626 3.1:+21987314 MS.gene61873:CDS
TACACACGCCGTGACAAACA+TGG 0.517795 3.1:+21988956 MS.gene61873:CDS
TTGAGTTGGCAAATGGCGTA+TGG 0.519250 3.1:+21987276 MS.gene61873:CDS
TCGACGAGGTTAATCTAGTC+GGG 0.520677 3.1:-21989019 None:intergenic
GGTCAAGCTACTTCTGAAAG+AGG 0.527295 3.1:+21987809 MS.gene61873:CDS
ATGAGTACGAAAGGAAAGAT+GGG 0.528207 3.1:+21986514 MS.gene61873:CDS
TTTCTCACAATCACATTCCT+CGG 0.532162 3.1:+21987340 MS.gene61873:CDS
TGGCAAATGGCGTATGGGCG+AGG 0.534020 3.1:+21987282 MS.gene61873:CDS
GCTTGGAAAGAAAGAGTTGA+TGG 0.535240 3.1:+21987740 MS.gene61873:CDS
GGTGTGTCATTATTATTGCA+AGG 0.536434 3.1:+21988923 MS.gene61873:CDS
GATGCCATTGACATCCTCTC+AGG 0.536458 3.1:-21987517 None:intergenic
ACACCATAGTGGAAATTATG+AGG 0.536519 3.1:-21989135 None:intergenic
TCGACAACCACTTTCGAGGA+AGG 0.537065 3.1:+21988163 MS.gene61873:CDS
CCCCACAAATCTGACAGACT+TGG 0.543911 3.1:-21986413 None:intergenic
TCGCAGAACGCATGTTGAGT+TGG 0.550049 3.1:+21987262 MS.gene61873:CDS
GATAAGCCGATGAAGACGTT+GGG 0.550649 3.1:+21986387 None:intergenic
GGCGTATGGGCGAGGTGAGG+AGG 0.554311 3.1:+21987290 MS.gene61873:CDS
ATAGAAACCTTCCTCGAAAG+TGG 0.554909 3.1:-21988170 None:intergenic
TGGGTTGTGATCACACTCCT+TGG 0.557778 3.1:+21988976 MS.gene61873:CDS
ATCGACGAGGTTAATCTAGT+CGG 0.558488 3.1:-21989020 None:intergenic
TTAAGATCAGACGAATATGA+TGG 0.559054 3.1:-21987577 None:intergenic
GGAAAGAAAGAGTTGATGGC+TGG 0.567591 3.1:+21987744 MS.gene61873:CDS
TTGAACAACCTCTTGTCCAC+CGG 0.570119 3.1:-21987367 None:intergenic
GGCGATCCGTTCATTGCTTG+TGG 0.570797 3.1:+21986459 MS.gene61873:CDS
CATAACACGGCCTACAAACA+GGG 0.575205 3.1:-21986494 None:intergenic
TTCCTTTCGTACTCATAACA+CGG 0.576260 3.1:-21986507 None:intergenic
ACCGTGAAACATATCTGGAC+AGG 0.576330 3.1:+21988384 MS.gene61873:CDS
GGCCGTGTTATGAGTACGAA+AGG 0.579401 3.1:+21986505 MS.gene61873:CDS
AATGGCGTATGGGCGAGGTG+AGG 0.582951 3.1:+21987287 MS.gene61873:CDS
CTCACCTGAGAGGATGTCAA+TGG 0.586728 3.1:+21987513 MS.gene61873:CDS
AGCTGATGTTATGGCGATAG+CGG 0.587222 3.1:+21989046 MS.gene61873:CDS
GTAGATTGCTTGCTTTCAAG+TGG 0.587832 3.1:+21988892 MS.gene61873:intron
CTTGGAGATCGTGAAGAGGA+TGG 0.590122 3.1:+21987174 MS.gene61873:CDS
GGATAAGCCGATGAAGACGT+TGG 0.593259 3.1:+21986386 None:intergenic
TAGGATAAATCCATACCGTA+TGG 0.594537 3.1:+21988202 MS.gene61873:CDS
TCGGCTAACCGGTGGACAAG+AGG 0.598073 3.1:+21987359 MS.gene61873:CDS
CATCTCCTGTAAATGCTCGC+GGG 0.600452 3.1:+21987536 MS.gene61873:CDS
CACATTCCTCGGCTAACCGG+TGG 0.601665 3.1:+21987351 MS.gene61873:CDS
AGAATAATGACCATACGGTA+TGG 0.604646 3.1:-21988212 None:intergenic
ACCGTATGGTCATTATTCTG+CGG 0.607361 3.1:+21988216 MS.gene61873:CDS
GCCGCAGAATAATGACCATA+CGG 0.609025 3.1:-21988217 None:intergenic
GCATCTCCTGTAAATGCTCG+CGG 0.611021 3.1:+21987535 MS.gene61873:CDS
ATCACAACCCATGTTTGTCA+CGG 0.612478 3.1:-21988964 None:intergenic
TAGATTGCTTGCTTTCAAGT+GGG 0.614620 3.1:+21988893 MS.gene61873:intron
AATACTGCTCCAATGAGCAC+AGG 0.619120 3.1:+21987788 MS.gene61873:CDS
TGCTCATACAAATGTAACCA+AGG 0.622997 3.1:-21988993 None:intergenic
ACACACGCCGTGACAAACAT+GGG 0.626500 3.1:+21988957 MS.gene61873:CDS
TCCCTATGCAGCAAACATCA+GGG 0.634130 3.1:+21987691 MS.gene61873:intron
CATTGACATCCTCTCAGGTG+AGG 0.637861 3.1:-21987512 None:intergenic
TGAGTTGGCAAATGGCGTAT+GGG 0.637971 3.1:+21987277 MS.gene61873:CDS
CAAACACCACAAGCAATGAA+CGG 0.638229 3.1:-21986465 None:intergenic
GGTTCACAGGAAGCCATTTG+GGG 0.639851 3.1:-21988364 None:intergenic
TCTTGTCCACCGGTTAGCCG+AGG 0.648285 3.1:-21987357 None:intergenic
AATTCTTGGAGATCGTGAAG+AGG 0.657041 3.1:+21987170 MS.gene61873:CDS
ACACGGCCTACAAACAGGGA+AGG 0.657850 3.1:-21986490 None:intergenic
TATCTGCAGCCTCACCTGAG+AGG 0.670320 3.1:+21987503 MS.gene61873:CDS
CCAAGTCTGTCAGATTTGTG+GGG 0.689071 3.1:+21986413 MS.gene61873:CDS
ACTCGATACAATAAGCACAA+AGG 0.699220 3.1:+21986561 MS.gene61873:CDS
GGTAGTGCAAGAAAATGACA+AGG 0.712905 3.1:-21988247 None:intergenic
GGAGATCGTGAAGAGGATGG+TGG 0.741736 3.1:+21987177 MS.gene61873:CDS
AACATCAGCTAACATCGACG+AGG 0.769068 3.1:-21989033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTAATAGTTAGTTT+CGG + chr3.1:21988527-21988546 MS.gene61873:intron 10.0%
!! GAAACTAACTATTAAATAAA+TGG - chr3.1:21988528-21988547 None:intergenic 15.0%
!! TAAAAGAAAAACTACAAATT+TGG - chr3.1:21988492-21988511 None:intergenic 15.0%
!! TTACTAGTTATATTTGAAAA+TGG - chr3.1:21987113-21987132 None:intergenic 15.0%
!!! AATGAGTTTGATTTATTAAA+GGG - chr3.1:21986670-21986689 None:intergenic 15.0%
!! AAAATTTATGAAGGAGTTAA+AGG - chr3.1:21988686-21988705 None:intergenic 20.0%
!! ACATTTAATTCAAAATCTGT+TGG - chr3.1:21987446-21987465 None:intergenic 20.0%
!! ATGGAAACAATATTATATAG+AGG - chr3.1:21987400-21987419 None:intergenic 20.0%
!! CAATATTAAAAATACTCGTA+AGG - chr3.1:21988613-21988632 None:intergenic 20.0%
!! CAATGATCTAATCATTTAAA+TGG - chr3.1:21986969-21986988 None:intergenic 20.0%
!! CATTTAATTCAAAATCTGTT+GGG - chr3.1:21987445-21987464 None:intergenic 20.0%
!! GTGCATTATAAAATTTATGA+AGG - chr3.1:21988695-21988714 None:intergenic 20.0%
!! GTTATATTTGAAAATGGTAA+AGG - chr3.1:21987107-21987126 None:intergenic 20.0%
!! TATTGTTCAAATTGATACTA+TGG - chr3.1:21987419-21987438 None:intergenic 20.0%
!!! CTAATCATTTAAATGGTTTT+GGG - chr3.1:21986962-21986981 None:intergenic 20.0%
!!! GAATGAGTTTGATTTATTAA+AGG - chr3.1:21986671-21986690 None:intergenic 20.0%
!!! GTTTTTAACTTATTCTAGTT+TGG + chr3.1:21986911-21986930 MS.gene61873:intron 20.0%
!!! TCTAATCATTTAAATGGTTT+TGG - chr3.1:21986963-21986982 None:intergenic 20.0%
!!! TGTTATCTGATATTGATTTT+AGG + chr3.1:21987655-21987674 MS.gene61873:intron 20.0%
!!! TTTCATATTGGATCTTTTAT+AGG + chr3.1:21986610-21986629 MS.gene61873:intron 20.0%
! AAATCTGTTGTCTTTCATAT+TGG + chr3.1:21986598-21986617 MS.gene61873:intron 25.0%
! ATTTCACTGATGAAACAAAA+TGG - chr3.1:21987015-21987034 None:intergenic 25.0%
! GAAACTTCCTTATCATAATT+TGG - chr3.1:21987324-21987343 None:intergenic 25.0%
! TACAACATATTTATCAGTCA+CGG - chr3.1:21988020-21988039 None:intergenic 25.0%
! TATCAGTTATATGTGAAGTT+TGG + chr3.1:21988312-21988331 MS.gene61873:intron 25.0%
! TGAATTGTACTTGAAATCAT+TGG - chr3.1:21987217-21987236 None:intergenic 25.0%
! TGATTTCCTTAGCAAATAAA+AGG - chr3.1:21988444-21988463 None:intergenic 25.0%
!! ACGCTTATTTAATTGATTTC+AGG + chr3.1:21987138-21987157 MS.gene61873:intron 25.0%
!!! CTTAACACTTTGTTTTGATT+AGG + chr3.1:21988129-21988148 MS.gene61873:intron 25.0%
!!! TTAACTTATTCTAGTTTGGT+TGG + chr3.1:21986915-21986934 MS.gene61873:intron 25.0%
AAACAGCACACATTCTTATT+GGG - chr3.1:21987904-21987923 None:intergenic 30.0%
AAATCAATTATGGCTCAGTT+TGG - chr3.1:21988781-21988800 None:intergenic 30.0%
ATAAGCACAAAGGTAAAGTA+TGG + chr3.1:21986571-21986590 MS.gene61873:intron 30.0%
ATAGATCAAGCAGTTTGAAT+GGG - chr3.1:21986847-21986866 None:intergenic 30.0%
ATCTACGAATTTCTTGAATG+AGG - chr3.1:21988878-21988897 None:intergenic 30.0%
CAAACTCATTCTTTCATTCT+TGG + chr3.1:21986680-21986699 MS.gene61873:intron 30.0%
CTTGGTTATATCAACTATGA+AGG - chr3.1:21988832-21988851 None:intergenic 30.0%
GAGTTAAAGGAGAAAGTTTA+TGG - chr3.1:21988673-21988692 None:intergenic 30.0%
TAAGCACAAAGGTAAAGTAT+GGG + chr3.1:21986572-21986591 MS.gene61873:intron 30.0%
TATAGATCAAGCAGTTTGAA+TGG - chr3.1:21986848-21986867 None:intergenic 30.0%
TATCTTCTATTTCAGACATC+TGG + chr3.1:21987475-21987494 MS.gene61873:intron 30.0%
TATGGATTTATCCTAGAAGA+TGG - chr3.1:21988197-21988216 None:intergenic 30.0%
TCTGCAACTCAAATCAATTA+TGG - chr3.1:21988791-21988810 None:intergenic 30.0%
TGATGCTCCAAATTATGATA+AGG + chr3.1:21987314-21987333 MS.gene61873:CDS 30.0%
TTAAGATCAGACGAATATGA+TGG - chr3.1:21987580-21987599 None:intergenic 30.0%
! CTTCATAGTTGATATAACCA+AGG + chr3.1:21988830-21988849 MS.gene61873:intron 30.0%
! GTTCTTTGATTGTATCGTTT+TGG - chr3.1:21989096-21989115 None:intergenic 30.0%
!! ATTTGAGTTGCAGATATGAT+CGG + chr3.1:21988797-21988816 MS.gene61873:intron 30.0%
!! CATGATTAGTTCTATGACTT+AGG + chr3.1:21986871-21986890 MS.gene61873:intron 30.0%
AAAAGGAGAGTCAAAACTCA+AGG - chr3.1:21988427-21988446 None:intergenic 35.0%
AAAGGAGAGTCAAAACTCAA+GGG - chr3.1:21988426-21988445 None:intergenic 35.0%
ACTCGATACAATAAGCACAA+AGG + chr3.1:21986561-21986580 MS.gene61873:CDS 35.0%
AGAATAATGACCATACGGTA+TGG - chr3.1:21988215-21988234 None:intergenic 35.0%
AGGTTTCTATTCCATCTTCT+AGG + chr3.1:21988183-21988202 MS.gene61873:CDS 35.0%
AGTGACTTTGCTTGAGTAAA+CGG - chr3.1:21986780-21986799 None:intergenic 35.0%
ATGAGTACGAAAGGAAAGAT+GGG + chr3.1:21986514-21986533 MS.gene61873:CDS 35.0%
CAGATTTGTGGGGATAATAT+CGG + chr3.1:21986423-21986442 MS.gene61873:CDS 35.0%
CTGATCCAATATCCAAGAAA+AGG - chr3.1:21988342-21988361 None:intergenic 35.0%
GAAACAGCACACATTCTTAT+TGG - chr3.1:21987905-21987924 None:intergenic 35.0%
GAGTTTCATAACTGCTGAAA+AGG - chr3.1:21987984-21988003 None:intergenic 35.0%
TAGGATAAATCCATACCGTA+TGG + chr3.1:21988202-21988221 MS.gene61873:CDS 35.0%
TATGAGTACGAAAGGAAAGA+TGG + chr3.1:21986513-21986532 MS.gene61873:CDS 35.0%
TGCTCATACAAATGTAACCA+AGG - chr3.1:21988996-21989015 None:intergenic 35.0%
TTCCTTTCGTACTCATAACA+CGG - chr3.1:21986510-21986529 None:intergenic 35.0%
TTTCTCACAATCACATTCCT+CGG + chr3.1:21987340-21987359 MS.gene61873:CDS 35.0%
TTTGCTTGAGTAAACGGTAA+TGG - chr3.1:21986774-21986793 None:intergenic 35.0%
! AATATCGGTAGTGCTGTTAA+TGG + chr3.1:21986438-21986457 MS.gene61873:CDS 35.0%
! ATGTGTATAGTTTGTGAGTG+AGG - chr3.1:21987619-21987638 None:intergenic 35.0%
! GGTGTGTCATTATTATTGCA+AGG + chr3.1:21988923-21988942 MS.gene61873:CDS 35.0%
! GTTTGCCTTTTCTTGGATAT+TGG + chr3.1:21988334-21988353 MS.gene61873:intron 35.0%
! TAGATTGCTTGCTTTCAAGT+GGG + chr3.1:21988893-21988912 MS.gene61873:intron 35.0%
! TGTGTATAGTTTGTGAGTGA+GGG - chr3.1:21987618-21987637 None:intergenic 35.0%
!! ATACAGAAGTACTCACAACA+AGG - chr3.1:21987879-21987898 None:intergenic 35.0%
!! GACTCTCCTTTTATTTGCTA+AGG + chr3.1:21988435-21988454 MS.gene61873:intron 35.0%
!! TTCTGCGATCTTTTGCTTTT+GGG - chr3.1:21987250-21987269 None:intergenic 35.0%
!! TTTGAGTTGCAGATATGATC+GGG + chr3.1:21988798-21988817 MS.gene61873:intron 35.0%
!!! AAGTTTGGTTTGCCTTTTCT+TGG + chr3.1:21988327-21988346 MS.gene61873:intron 35.0%
AACCACAACGCATAAGCATT+GGG - chr3.1:21988290-21988309 None:intergenic 40.0%
AATTCTTGGAGATCGTGAAG+AGG + chr3.1:21987170-21987189 MS.gene61873:CDS 40.0%
ACCGTATGGTCATTATTCTG+CGG + chr3.1:21988216-21988235 MS.gene61873:CDS 40.0%
AGATATGTTTCACGGTTCAC+AGG - chr3.1:21988380-21988399 None:intergenic 40.0%
ATAGAAACCTTCCTCGAAAG+TGG - chr3.1:21988173-21988192 None:intergenic 40.0%
ATCACAACCCATGTTTGTCA+CGG - chr3.1:21988967-21988986 None:intergenic 40.0%
ATCGACGAGGTTAATCTAGT+CGG - chr3.1:21989023-21989042 None:intergenic 40.0%
ATCTGGACAGGCTTTCATTA+AGG + chr3.1:21988396-21988415 MS.gene61873:CDS 40.0%
CAAAAGAGCTAGTAGCAATG+AGG - chr3.1:21987942-21987961 None:intergenic 40.0%
CAAACACCACAAGCAATGAA+CGG - chr3.1:21986468-21986487 None:intergenic 40.0%
GCTTGGAAAGAAAGAGTTGA+TGG + chr3.1:21987740-21987759 MS.gene61873:CDS 40.0%
GGAATCGAATCAATCGATGA+AGG + chr3.1:21986701-21986720 MS.gene61873:intron 40.0%
GGTAGTGCAAGAAAATGACA+AGG - chr3.1:21988250-21988269 None:intergenic 40.0%
GTAATGGCACAGATCAGTAT+TGG - chr3.1:21986758-21986777 None:intergenic 40.0%
GTAGATTGCTTGCTTTCAAG+TGG + chr3.1:21988892-21988911 MS.gene61873:intron 40.0%
GTCGATGTTAGCTGATGTTA+TGG + chr3.1:21989037-21989056 MS.gene61873:CDS 40.0%
TAACCACAACGCATAAGCAT+TGG - chr3.1:21988291-21988310 None:intergenic 40.0%
TATTGGATCAGTTCCCCAAA+TGG + chr3.1:21988351-21988370 MS.gene61873:intron 40.0%
TGGGTACGGGATTTGTAATT+CGG - chr3.1:21988271-21988290 None:intergenic 40.0%
TGTGAACCGTGAAACATATC+TGG + chr3.1:21988379-21988398 MS.gene61873:CDS 40.0%
! ATCGAAAAGCACATCAGTAC+TGG - chr3.1:21987852-21987871 None:intergenic 40.0%
! GCTACTTCTGAAAGAGGAAT+AGG + chr3.1:21987815-21987834 MS.gene61873:CDS 40.0%
! GGATCTTTTATAGGCATGTC+AGG + chr3.1:21986619-21986638 MS.gene61873:intron 40.0%
! GTGTATAGTTTGTGAGTGAG+GGG - chr3.1:21987617-21987636 None:intergenic 40.0%
! GTTCTGCGATCTTTTGCTTT+TGG - chr3.1:21987251-21987270 None:intergenic 40.0%
! TGCTTTCAAGTGGGAAGTTA+AGG + chr3.1:21988902-21988921 MS.gene61873:CDS 40.0%
! TGTATCGAGTTTTGCACTGA+GGG - chr3.1:21986551-21986570 None:intergenic 40.0%
! TTGTATCGAGTTTTGCACTG+AGG - chr3.1:21986552-21986571 None:intergenic 40.0%
!! CTCATTGCTACTAGCTCTTT+TGG + chr3.1:21987940-21987959 MS.gene61873:intron 40.0%
!! GTGTGCTGTTTCATTTCTGT+TGG + chr3.1:21987913-21987932 MS.gene61873:intron 40.0%
AACATCAGCTAACATCGACG+AGG - chr3.1:21989036-21989055 None:intergenic 45.0%
AATACTGCTCCAATGAGCAC+AGG + chr3.1:21987788-21987807 MS.gene61873:CDS 45.0%
AATCACATTCCTCGGCTAAC+CGG + chr3.1:21987348-21987367 MS.gene61873:CDS 45.0%
ACCGTGAAACATATCTGGAC+AGG + chr3.1:21988384-21988403 MS.gene61873:CDS 45.0%
AGCCAAGTCTGTCAGATTTG+TGG + chr3.1:21986411-21986430 MS.gene61873:CDS 45.0%
AGCTGATGTTATGGCGATAG+CGG + chr3.1:21989046-21989065 MS.gene61873:CDS 45.0%
AGTTGCAGATATGATCGGGA+AGG + chr3.1:21988802-21988821 MS.gene61873:intron 45.0%
CAAGCTACATTACCCAATCC+TGG - chr3.1:21987725-21987744 None:intergenic 45.0%
CAATCGATGAAGGACAGTGT+TGG + chr3.1:21986711-21986730 MS.gene61873:intron 45.0%
CAGGATTGGGTAATGTAGCT+TGG + chr3.1:21987723-21987742 MS.gene61873:CDS 45.0%
CATAACACGGCCTACAAACA+GGG - chr3.1:21986497-21986516 None:intergenic 45.0%
CCAAGTCTGTCAGATTTGTG+GGG + chr3.1:21986413-21986432 MS.gene61873:CDS 45.0%
GCCAAGTCTGTCAGATTTGT+GGG + chr3.1:21986412-21986431 MS.gene61873:CDS 45.0%
GCCGCAGAATAATGACCATA+CGG - chr3.1:21988220-21988239 None:intergenic 45.0%
GCCTGTCCAGATATGTTTCA+CGG - chr3.1:21988388-21988407 None:intergenic 45.0%
GTTGCAGATATGATCGGGAA+GGG + chr3.1:21988803-21988822 MS.gene61873:intron 45.0%
TACCCAATGCTTATGCGTTG+TGG + chr3.1:21988285-21988304 MS.gene61873:intron 45.0%
TCACGATCTCCAAGAATTGC+AGG - chr3.1:21987168-21987187 None:intergenic 45.0%
TCAGGTAGTCCTGCAATTCT+TGG + chr3.1:21987156-21987175 MS.gene61873:intron 45.0%
TCATAACACGGCCTACAAAC+AGG - chr3.1:21986498-21986517 None:intergenic 45.0%
TCCCTATGCAGCAAACATCA+GGG + chr3.1:21987691-21987710 MS.gene61873:intron 45.0%
TCGACGAGGTTAATCTAGTC+GGG - chr3.1:21989022-21989041 None:intergenic 45.0%
TCTATGACTTAGGAGACTGC+TGG + chr3.1:21986881-21986900 MS.gene61873:intron 45.0%
TTCCCTATGCAGCAAACATC+AGG + chr3.1:21987690-21987709 MS.gene61873:intron 45.0%
TTGAACAACCTCTTGTCCAC+CGG - chr3.1:21987370-21987389 None:intergenic 45.0%
TTGCAGATATGATCGGGAAG+GGG + chr3.1:21988804-21988823 MS.gene61873:intron 45.0%
TTTGTGCCTTCCCTGTTTGT+AGG + chr3.1:21986484-21986503 MS.gene61873:CDS 45.0%
! AACCCTGATGTTTGCTGCAT+AGG - chr3.1:21987696-21987715 None:intergenic 45.0%
! ACCCTGATGTTTGCTGCATA+GGG - chr3.1:21987695-21987714 None:intergenic 45.0%
! GGTCAAGCTACTTCTGAAAG+AGG + chr3.1:21987809-21987828 MS.gene61873:CDS 45.0%
! TGAGTTGGCAAATGGCGTAT+GGG + chr3.1:21987277-21987296 MS.gene61873:CDS 45.0%
!! AACGCATAAGCATTGGGTAC+GGG - chr3.1:21988284-21988303 None:intergenic 45.0%
!! ACGCATGTTGAGTTGGCAAA+TGG + chr3.1:21987269-21987288 MS.gene61873:CDS 45.0%
!! CAACGCATAAGCATTGGGTA+CGG - chr3.1:21988285-21988304 None:intergenic 45.0%
!! GCACAGATCAGTATTGGTAG+CGG - chr3.1:21986752-21986771 None:intergenic 45.0%
!! GGAAAGAAAGAGTTGATGGC+TGG + chr3.1:21987744-21987763 MS.gene61873:CDS 45.0%
!! TATGGCGATAGCGGAAGTTA+AGG + chr3.1:21989055-21989074 MS.gene61873:CDS 45.0%
!! TTGAGTTGGCAAATGGCGTA+TGG + chr3.1:21987276-21987295 MS.gene61873:CDS 45.0%
AACATCAGGGTTGCTGAACC+AGG + chr3.1:21987704-21987723 MS.gene61873:CDS 50.0%
AAGCTCGACAACCACTTTCG+AGG + chr3.1:21988159-21988178 MS.gene61873:CDS 50.0%
ACACACGCCGTGACAAACAT+GGG + chr3.1:21988957-21988976 MS.gene61873:CDS 50.0%
ACCAAGGACAAGAGTCTTGC+TGG + chr3.1:21988846-21988865 MS.gene61873:intron 50.0%
ACCAGCAAGACTCTTGTCCT+TGG - chr3.1:21988850-21988869 None:intergenic 50.0%
ACGGTTCACAGGAAGCCATT+TGG - chr3.1:21988369-21988388 None:intergenic 50.0%
ACTTCTCCACAAGCACTTGC+AGG + chr3.1:21988553-21988572 MS.gene61873:intron 50.0%
AGGGTTGCTGAACCAGGATT+GGG + chr3.1:21987710-21987729 MS.gene61873:CDS 50.0%
CATCTCCTGTAAATGCTCGC+GGG + chr3.1:21987536-21987555 MS.gene61873:CDS 50.0%
CATTGACATCCTCTCAGGTG+AGG - chr3.1:21987515-21987534 None:intergenic 50.0%
CCCCACAAATCTGACAGACT+TGG - chr3.1:21986416-21986435 None:intergenic 50.0%
CGGTTCACAGGAAGCCATTT+GGG - chr3.1:21988368-21988387 None:intergenic 50.0%
CTCACCTGAGAGGATGTCAA+TGG + chr3.1:21987513-21987532 MS.gene61873:CDS 50.0%
CTTGGAGATCGTGAAGAGGA+TGG + chr3.1:21987174-21987193 MS.gene61873:CDS 50.0%
GATGCCATTGACATCCTCTC+AGG - chr3.1:21987520-21987539 None:intergenic 50.0%
GCATCTCCTGTAAATGCTCG+CGG + chr3.1:21987535-21987554 MS.gene61873:CDS 50.0%
GGCCGTGTTATGAGTACGAA+AGG + chr3.1:21986505-21986524 MS.gene61873:CDS 50.0%
GGTTCACAGGAAGCCATTTG+GGG - chr3.1:21988367-21988386 None:intergenic 50.0%
GTAGCTTGACCTGTGCTCAT+TGG - chr3.1:21987800-21987819 None:intergenic 50.0%
TACACACGCCGTGACAAACA+TGG + chr3.1:21988956-21988975 MS.gene61873:CDS 50.0%
TCCACAAGCACTTGCAGGAA+AGG + chr3.1:21988558-21988577 MS.gene61873:intron 50.0%
TCCTTTCCTGCAAGTGCTTG+TGG - chr3.1:21988562-21988581 None:intergenic 50.0%
TCGACAACCACTTTCGAGGA+AGG + chr3.1:21988163-21988182 MS.gene61873:CDS 50.0%
TCGCAGAACGCATGTTGAGT+TGG + chr3.1:21987262-21987281 MS.gene61873:CDS 50.0%
TGGGTTGTGATCACACTCCT+TGG + chr3.1:21988976-21988995 MS.gene61873:CDS 50.0%
!! CGATGAAGGACAGTGTTGGT+AGG + chr3.1:21986715-21986734 MS.gene61873:intron 50.0%
ACACGGCCTACAAACAGGGA+AGG - chr3.1:21986493-21986512 None:intergenic 55.0%
CAGGGTTGCTGAACCAGGAT+TGG + chr3.1:21987709-21987728 MS.gene61873:CDS 55.0%
CGTTTCCCGCGAGCATTTAC+AGG - chr3.1:21987544-21987563 None:intergenic 55.0%
GGAGATCGTGAAGAGGATGG+TGG + chr3.1:21987177-21987196 MS.gene61873:CDS 55.0%
GGCGATCCGTTCATTGCTTG+TGG + chr3.1:21986459-21986478 MS.gene61873:CDS 55.0%
TATCTGCAGCCTCACCTGAG+AGG + chr3.1:21987503-21987522 MS.gene61873:CDS 55.0%
AATGGCGTATGGGCGAGGTG+AGG + chr3.1:21987287-21987306 MS.gene61873:CDS 60.0%
CACATTCCTCGGCTAACCGG+TGG + chr3.1:21987351-21987370 MS.gene61873:CDS 60.0%
TCGGCTAACCGGTGGACAAG+AGG + chr3.1:21987359-21987378 MS.gene61873:CDS 60.0%
TGGCAAATGGCGTATGGGCG+AGG + chr3.1:21987282-21987301 MS.gene61873:CDS 60.0%
! TCTTGTCCACCGGTTAGCCG+AGG - chr3.1:21987360-21987379 None:intergenic 60.0%
GGCGTATGGGCGAGGTGAGG+AGG + chr3.1:21987290-21987309 MS.gene61873:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 21986396 21989142 21986396 ID=MS.gene61873
chr3.1 mRNA 21986396 21989142 21986396 ID=MS.gene61873.t1;Parent=MS.gene61873
chr3.1 exon 21986396 21986582 21986396 ID=MS.gene61873.t1.exon1;Parent=MS.gene61873.t1
chr3.1 CDS 21986396 21986582 21986396 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21987160 21987380 21987160 ID=MS.gene61873.t1.exon2;Parent=MS.gene61873.t1
chr3.1 CDS 21987160 21987380 21987160 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21987490 21987607 21987490 ID=MS.gene61873.t1.exon3;Parent=MS.gene61873.t1
chr3.1 CDS 21987490 21987607 21987490 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21987702 21987882 21987702 ID=MS.gene61873.t1.exon4;Parent=MS.gene61873.t1
chr3.1 CDS 21987702 21987882 21987702 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21988151 21988283 21988151 ID=MS.gene61873.t1.exon5;Parent=MS.gene61873.t1
chr3.1 CDS 21988151 21988283 21988151 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21988362 21988417 21988362 ID=MS.gene61873.t1.exon6;Parent=MS.gene61873.t1
chr3.1 CDS 21988362 21988417 21988362 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
chr3.1 exon 21988896 21989142 21988896 ID=MS.gene61873.t1.exon7;Parent=MS.gene61873.t1
chr3.1 CDS 21988896 21989142 21988896 ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1
Gene Sequence

>MS.gene61873

ATGAAGACGTTGGGTAGCCAAGTCTGTCAGATTTGTGGGGATAATATCGGTAGTGCTGTTAATGGCGATCCGTTCATTGCTTGTGGTGTTTGTGCCTTCCCTGTTTGTAGGCCGTGTTATGAGTACGAAAGGAAAGATGGGAATCAGTCTTGCCCTCAGTGCAAAACTCGATACAATAAGCACAAAGGTAAAGTATGGGATAAAATCTGTTGTCTTTCATATTGGATCTTTTATAGGCATGTCAGGCTTTAAACTAAAGTCACTTAGCAAACCCTTTAATAAATCAAACTCATTCTTTCATTCTTGGAATCGAATCAATCGATGAAGGACAGTGTTGGTAGGTGCATGTTGTGCCGCTACCAATACTGATCTGTGCCATTACCGTTTACTCAAGCAAAGTCACTAAAGTGTATAGATAGTTCATAAAAGAAATGTTTGCATTTTCTTACCCATTCAAACTGCTTGATCTATAATACATGATTAGTTCTATGACTTAGGAGACTGCTGGATTCGTAGTTTTTAACTTATTCTAGTTTGGTTGGTCTACTTAGTGCAAACTACAACCCAAAACCATTTAAATGATTAGATCATTGTAAGCTAATAATTTTGTTGTTTTCCATTTTGTTTCATCAGTGAAATTGTATTACTGCAAGATGAATATTATCAATGTACACAATGTATTTTTCATGATAACATGTCTGCTGTTGTCCTTTACCATTTTCAAATATAACTAGTAATAAGCACGCTTATTTAATTGATTTCAGGTAGTCCTGCAATTCTTGGAGATCGTGAAGAGGATGGTGGTGCTGATAATGATGCCAATGATTTCAAGTACAATTCAGAAACTCAGACCCAAAAGCAAAAGATCGCAGAACGCATGTTGAGTTGGCAAATGGCGTATGGGCGAGGTGAGGAGGTTGATGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCGGCTAACCGGTGGACAAGAGGTTGTTCAACTAGTTTCCTCTATATAATATTGTTTCCATAGTATCAATTTGAACAATAGTTCCCAACAGATTTTGAATTAAATGTTCTTTGCTATATCTTCTATTTCAGACATCTGGAGAATTATCTGCAGCCTCACCTGAGAGGATGTCAATGGCATCTCCTGTAAATGCTCGCGGGAAACGAGTTCATAATCATCCATCATATTCGTCTGATCTTAATCAATCACGTAATTCCCCTCACTCACAAACTATACACATTCTCATATAGTGTCATTGTTATCTGATATTGATTTTAGGTGTTTCTTTATATTCCCTATGCAGCAAACATCAGGGTTGCTGAACCAGGATTGGGTAATGTAGCTTGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCACGATAATAAGAATACTGCTCCAATGAGCACAGGTCAAGCTACTTCTGAAAGAGGAATAGGAGATATTGATGCCAGTACTGATGTGCTTTTCGATGATTCCTTGTTGTGAGTACTTCTGTATTTCCCAATAAGAATGTGTGCTGTTTCATTTCTGTTGGAAGCCTCATTGCTACTAGCTCTTTTGGTATCAGTGATACTATTATCCTTTTCAGCAGTTATGAAACTCATTTAGTAATATACCGTGACTGATAAATATGTTGTAAAATTTTCTTTTGTGAATGTGTAATAAATAATCAAATTTGTTCGATTGTGTCGCTTTTTAATGCATATCTTTTGTTTTTAGCTTCAATACTTAACACTTTGTTTTGATTAGGAATGATGAAGCTCGACAACCACTTTCGAGGAAGGTTTCTATTCCATCTTCTAGGATAAATCCATACCGTATGGTCATTATTCTGCGGCTTGTTATCCTTGTCATTTTCTTGCACTACCGAATTACAAATCCCGTACCCAATGCTTATGCGTTGTGGTTAATATCAGTTATATGTGAAGTTTGGTTTGCCTTTTCTTGGATATTGGATCAGTTCCCCAAATGGCTTCCTGTGAACCGTGAAACATATCTGGACAGGCTTTCATTAAGGTTGACCCTTGAGTTTTGACTCTCCTTTTATTTGCTAAGGAAATCATCTTTGTAGTTTTTTTTTTTTTTGACCAAATTTGTAGTTTTTCTTTTATTATGATAATTTTCCATTTATTTAATAGTTAGTTTCGGCAAACTTCTCCACAAGCACTTGCAGGAAAGGAATAGAAATATTAAAAGAATCTTTGTAATCCTTACGAGTATTTTTAATATTGCACAAGTTAAACGTTTTTTTTCTTCATCTCAATTTGTCCATAAACTTTCTCCTTTAACTCCTTCATAAATTTTATAATGCACTTTTTTTAGCAAATACATATACATTTGTTTTATATGAGAAACTTTCATACGATAGAAATTTATCCAAACTGAGCCATAATTGATTTGAGTTGCAGATATGATCGGGAAGGGGAACCTTCATAGTTGATATAACCAAGGACAAGAGTCTTGCTGGTTAACACCTCATTCAAGAAATTCGTAGATTGCTTGCTTTCAAGTGGGAAGTTAAGGTGTGTCATTATTATTGCAAGGCAAATTTGTGTACACACGCCGTGACAAACATGGGTTGTGATCACACTCCTTGGTTACATTTGTATGAGCAATGCCCGACTAGATTAACCTCGTCGATGTTAGCTGATGTTATGGCGATAGCGGAAGTTAAGGTGTGTCATGAACACGCCAAAACGATACAATCAAAGAACATCACTGCCAATCACAAGTCCTCATAA

Protein sequence

>MS.gene61873.t1

MKTLGSQVCQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCPQCKTRYNKHKGSPAILGDREEDGGADNDANDFKYNSETQTQKQKIAERMLSWQMAYGRGEEVDAPNYDKEVSHNHIPRLTGGQETSGELSAASPERMSMASPVNARGKRVHNHPSYSSDLNQSPNIRVAEPGLGNVAWKERVDGWKMKHDNKNTAPMSTGQATSERGIGDIDASTDVLFDDSLLNDEARQPLSRKVSIPSSRINPYRMVIILRLVILVIFLHYRITNPFPKWLPVNRETYLDRLSLRLLAFKWEVKVCHYYCKANLCTHAVTNMGCDHTPWLHLYEQCPTRLTSSMLADVMAIAEVKVCHEHAKTIQSKNITANHKSS