Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61873.t1 | AII73575.1 | 91.7 | 325 | 1 | 1 | 1 | 299 | 13 | 337 | 4.50E-167 | 597.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61873.t1 | Q941L0 | 65.0 | 326 | 75 | 7 | 1 | 299 | 12 | 325 | 4.7e-112 | 406.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61873.t1 | A0A076JE29 | 91.7 | 325 | 1 | 1 | 1 | 299 | 13 | 337 | 3.3e-167 | 597.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049145 | MS.gene61873 | 0.800411 | 1.46E-48 | -1.69E-46 |
MS.gene049209 | MS.gene61873 | 0.83983 | 1.25E-57 | -1.69E-46 |
MS.gene050817 | MS.gene61873 | 0.805788 | 1.13E-49 | -1.69E-46 |
MS.gene057195 | MS.gene61873 | 0.816588 | 5.12E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61873.t1 | MTR_3g030040 | 90.769 | 325 | 4 | 1 | 1 | 299 | 13 | 337 | 0.0 | 613 |
MS.gene61873.t1 | MTR_8g037260 | 68.196 | 327 | 74 | 4 | 1 | 299 | 13 | 337 | 4.66e-142 | 431 |
MS.gene61873.t1 | MTR_7g106680 | 54.769 | 325 | 80 | 5 | 1 | 299 | 12 | 295 | 2.04e-105 | 333 |
MS.gene61873.t1 | MTR_1g098550 | 40.419 | 334 | 147 | 8 | 4 | 299 | 38 | 357 | 3.95e-66 | 227 |
MS.gene61873.t1 | MTR_1g098550 | 40.419 | 334 | 147 | 8 | 4 | 299 | 34 | 353 | 5.17e-66 | 226 |
MS.gene61873.t1 | MTR_8g092590 | 41.071 | 336 | 150 | 8 | 1 | 299 | 31 | 355 | 3.74e-63 | 218 |
MS.gene61873.t1 | MTR_3g107520 | 39.759 | 332 | 151 | 7 | 1 | 299 | 32 | 347 | 1.18e-60 | 211 |
MS.gene61873.t1 | MTR_4g130510 | 40.181 | 331 | 124 | 11 | 1 | 299 | 29 | 317 | 8.60e-59 | 203 |
MS.gene61873.t1 | MTR_4g130510 | 40.181 | 331 | 124 | 11 | 1 | 299 | 29 | 317 | 4.16e-58 | 202 |
MS.gene61873.t1 | MTR_4g130510 | 40.181 | 331 | 124 | 11 | 1 | 299 | 29 | 317 | 6.26e-58 | 203 |
MS.gene61873.t1 | MTR_4g130510 | 40.181 | 331 | 124 | 11 | 1 | 299 | 29 | 317 | 6.70e-58 | 203 |
MS.gene61873.t1 | MTR_2g035780 | 34.891 | 321 | 118 | 6 | 6 | 300 | 34 | 289 | 2.07e-53 | 190 |
MS.gene61873.t1 | MTR_3g007770 | 34.557 | 327 | 133 | 8 | 1 | 299 | 31 | 304 | 3.37e-48 | 175 |
MS.gene61873.t1 | MTR_3g436010 | 31.858 | 226 | 123 | 5 | 1 | 208 | 29 | 241 | 2.39e-24 | 100 |
MS.gene61873.t1 | MTR_8g063270 | 62.687 | 67 | 25 | 0 | 1 | 67 | 29 | 95 | 3.63e-24 | 105 |
MS.gene61873.t1 | MTR_8g063270 | 40.566 | 106 | 37 | 1 | 221 | 300 | 167 | 272 | 7.47e-20 | 92.0 |
MS.gene61873.t1 | MTR_3g436010 | 31.858 | 226 | 123 | 5 | 1 | 208 | 29 | 241 | 5.35e-24 | 101 |
MS.gene61873.t1 | MTR_1g069605 | 48.515 | 101 | 25 | 2 | 226 | 300 | 79 | 178 | 1.19e-19 | 91.3 |
MS.gene61873.t1 | MTR_6g053420 | 58.696 | 46 | 19 | 0 | 310 | 355 | 25 | 70 | 6.80e-13 | 63.9 |
MS.gene61873.t1 | MTR_8g086600 | 42.222 | 90 | 26 | 1 | 237 | 300 | 174 | 263 | 1.44e-12 | 69.7 |
MS.gene61873.t1 | MTR_2g016630 | 30.822 | 146 | 61 | 3 | 186 | 300 | 112 | 248 | 2.30e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61873.t1 | AT5G05170 | 65.031 | 326 | 75 | 7 | 1 | 299 | 12 | 325 | 2.64e-137 | 418 |
MS.gene61873.t1 | AT4G32410 | 39.940 | 333 | 144 | 11 | 1 | 299 | 31 | 341 | 1.02e-61 | 214 |
MS.gene61873.t1 | AT5G17420 | 41.718 | 326 | 113 | 10 | 1 | 299 | 29 | 304 | 4.54e-61 | 212 |
MS.gene61873.t1 | AT5G09870 | 41.033 | 329 | 135 | 10 | 1 | 299 | 31 | 330 | 3.01e-59 | 207 |
MS.gene61873.t1 | AT5G64740 | 40.060 | 332 | 146 | 9 | 1 | 299 | 31 | 342 | 5.66e-58 | 204 |
MS.gene61873.t1 | AT2G25540 | 38.957 | 326 | 143 | 12 | 1 | 299 | 25 | 321 | 9.08e-58 | 203 |
MS.gene61873.t1 | AT4G39350 | 40.606 | 330 | 148 | 7 | 1 | 299 | 31 | 343 | 2.29e-56 | 199 |
MS.gene61873.t1 | AT2G21770 | 39.645 | 338 | 139 | 10 | 4 | 299 | 34 | 348 | 5.25e-54 | 192 |
MS.gene61873.t1 | AT5G44030 | 34.969 | 326 | 153 | 8 | 3 | 300 | 17 | 311 | 7.45e-51 | 183 |
MS.gene61873.t1 | AT5G44030 | 34.769 | 325 | 126 | 9 | 3 | 300 | 17 | 282 | 2.94e-48 | 176 |
MS.gene61873.t1 | AT4G18780 | 37.063 | 143 | 61 | 3 | 186 | 300 | 110 | 251 | 1.99e-14 | 75.5 |
MS.gene61873.t1 | AT4G18780 | 42.857 | 56 | 32 | 0 | 6 | 61 | 6 | 61 | 7.99e-11 | 64.3 |
Find 102 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAACTTCCTTATCATAATT+TGG | 0.223992 | 3.1:-21987321 | None:intergenic |
CGGTTCACAGGAAGCCATTT+GGG | 0.250743 | 3.1:-21988365 | None:intergenic |
CGTTTCCCGCGAGCATTTAC+AGG | 0.254624 | 3.1:-21987541 | None:intergenic |
ATCTGGACAGGCTTTCATTA+AGG | 0.281091 | 3.1:+21988396 | MS.gene61873:CDS |
TCAGGTAGTCCTGCAATTCT+TGG | 0.322057 | 3.1:+21987156 | MS.gene61873:intron |
TGCTTTCAAGTGGGAAGTTA+AGG | 0.332270 | 3.1:+21988902 | MS.gene61873:CDS |
GTTCTTTGATTGTATCGTTT+TGG | 0.349631 | 3.1:-21989093 | None:intergenic |
TATCTTCTATTTCAGACATC+TGG | 0.352560 | 3.1:+21987475 | MS.gene61873:intron |
AATATCGGTAGTGCTGTTAA+TGG | 0.364635 | 3.1:+21986438 | MS.gene61873:CDS |
AGGTTTCTATTCCATCTTCT+AGG | 0.371247 | 3.1:+21988183 | MS.gene61873:CDS |
TTTGTGCCTTCCCTGTTTGT+AGG | 0.371602 | 3.1:+21986484 | MS.gene61873:CDS |
TCACGATCTCCAAGAATTGC+AGG | 0.374891 | 3.1:-21987165 | None:intergenic |
TCATAACACGGCCTACAAAC+AGG | 0.377206 | 3.1:-21986495 | None:intergenic |
TGAATTGTACTTGAAATCAT+TGG | 0.378809 | 3.1:-21987214 | None:intergenic |
TGTGAACCGTGAAACATATC+TGG | 0.394605 | 3.1:+21988379 | MS.gene61873:CDS |
GCTACTTCTGAAAGAGGAAT+AGG | 0.394800 | 3.1:+21987815 | MS.gene61873:CDS |
TTCCCTATGCAGCAAACATC+AGG | 0.396400 | 3.1:+21987690 | MS.gene61873:intron |
ACGGTTCACAGGAAGCCATT+TGG | 0.408365 | 3.1:-21988366 | None:intergenic |
TGGGTACGGGATTTGTAATT+CGG | 0.409998 | 3.1:-21988268 | None:intergenic |
CAGGGTTGCTGAACCAGGAT+TGG | 0.428474 | 3.1:+21987709 | MS.gene61873:CDS |
GCCAAGTCTGTCAGATTTGT+GGG | 0.437505 | 3.1:+21986412 | MS.gene61873:CDS |
GCCTGTCCAGATATGTTTCA+CGG | 0.447132 | 3.1:-21988385 | None:intergenic |
AATCACATTCCTCGGCTAAC+CGG | 0.449192 | 3.1:+21987348 | MS.gene61873:CDS |
CAGATTTGTGGGGATAATAT+CGG | 0.451217 | 3.1:+21986423 | MS.gene61873:CDS |
GTAGCTTGACCTGTGCTCAT+TGG | 0.461895 | 3.1:-21987797 | None:intergenic |
CAAGCTACATTACCCAATCC+TGG | 0.473128 | 3.1:-21987722 | None:intergenic |
ATCGAAAAGCACATCAGTAC+TGG | 0.474835 | 3.1:-21987849 | None:intergenic |
GTCGATGTTAGCTGATGTTA+TGG | 0.475818 | 3.1:+21989037 | MS.gene61873:CDS |
AGCCAAGTCTGTCAGATTTG+TGG | 0.476029 | 3.1:+21986411 | MS.gene61873:CDS |
AGGGTTGCTGAACCAGGATT+GGG | 0.479793 | 3.1:+21987710 | MS.gene61873:CDS |
AAGCTCGACAACCACTTTCG+AGG | 0.485682 | 3.1:+21988159 | MS.gene61873:CDS |
TGGCTACCCAACGTCTTCAT+CGG | 0.486520 | 3.1:-21986393 | None:intergenic |
TATTGGATCAGTTCCCCAAA+TGG | 0.492173 | 3.1:+21988351 | MS.gene61873:intron |
TATGGCGATAGCGGAAGTTA+AGG | 0.493012 | 3.1:+21989055 | MS.gene61873:CDS |
ACGCATGTTGAGTTGGCAAA+TGG | 0.496488 | 3.1:+21987269 | MS.gene61873:CDS |
AACATCAGGGTTGCTGAACC+AGG | 0.497336 | 3.1:+21987704 | MS.gene61873:CDS |
TATGAGTACGAAAGGAAAGA+TGG | 0.503212 | 3.1:+21986513 | MS.gene61873:CDS |
TATGGATTTATCCTAGAAGA+TGG | 0.506219 | 3.1:-21988194 | None:intergenic |
CAGGATTGGGTAATGTAGCT+TGG | 0.512080 | 3.1:+21987723 | MS.gene61873:CDS |
AGATATGTTTCACGGTTCAC+AGG | 0.516002 | 3.1:-21988377 | None:intergenic |
AAATTATGAGGACTTGTGAT+TGG | 0.516039 | 3.1:-21989123 | None:intergenic |
TGATGCTCCAAATTATGATA+AGG | 0.517626 | 3.1:+21987314 | MS.gene61873:CDS |
TACACACGCCGTGACAAACA+TGG | 0.517795 | 3.1:+21988956 | MS.gene61873:CDS |
TTGAGTTGGCAAATGGCGTA+TGG | 0.519250 | 3.1:+21987276 | MS.gene61873:CDS |
TCGACGAGGTTAATCTAGTC+GGG | 0.520677 | 3.1:-21989019 | None:intergenic |
GGTCAAGCTACTTCTGAAAG+AGG | 0.527295 | 3.1:+21987809 | MS.gene61873:CDS |
ATGAGTACGAAAGGAAAGAT+GGG | 0.528207 | 3.1:+21986514 | MS.gene61873:CDS |
TTTCTCACAATCACATTCCT+CGG | 0.532162 | 3.1:+21987340 | MS.gene61873:CDS |
TGGCAAATGGCGTATGGGCG+AGG | 0.534020 | 3.1:+21987282 | MS.gene61873:CDS |
GCTTGGAAAGAAAGAGTTGA+TGG | 0.535240 | 3.1:+21987740 | MS.gene61873:CDS |
GGTGTGTCATTATTATTGCA+AGG | 0.536434 | 3.1:+21988923 | MS.gene61873:CDS |
GATGCCATTGACATCCTCTC+AGG | 0.536458 | 3.1:-21987517 | None:intergenic |
ACACCATAGTGGAAATTATG+AGG | 0.536519 | 3.1:-21989135 | None:intergenic |
TCGACAACCACTTTCGAGGA+AGG | 0.537065 | 3.1:+21988163 | MS.gene61873:CDS |
CCCCACAAATCTGACAGACT+TGG | 0.543911 | 3.1:-21986413 | None:intergenic |
TCGCAGAACGCATGTTGAGT+TGG | 0.550049 | 3.1:+21987262 | MS.gene61873:CDS |
GATAAGCCGATGAAGACGTT+GGG | 0.550649 | 3.1:+21986387 | None:intergenic |
GGCGTATGGGCGAGGTGAGG+AGG | 0.554311 | 3.1:+21987290 | MS.gene61873:CDS |
ATAGAAACCTTCCTCGAAAG+TGG | 0.554909 | 3.1:-21988170 | None:intergenic |
TGGGTTGTGATCACACTCCT+TGG | 0.557778 | 3.1:+21988976 | MS.gene61873:CDS |
ATCGACGAGGTTAATCTAGT+CGG | 0.558488 | 3.1:-21989020 | None:intergenic |
TTAAGATCAGACGAATATGA+TGG | 0.559054 | 3.1:-21987577 | None:intergenic |
GGAAAGAAAGAGTTGATGGC+TGG | 0.567591 | 3.1:+21987744 | MS.gene61873:CDS |
TTGAACAACCTCTTGTCCAC+CGG | 0.570119 | 3.1:-21987367 | None:intergenic |
GGCGATCCGTTCATTGCTTG+TGG | 0.570797 | 3.1:+21986459 | MS.gene61873:CDS |
CATAACACGGCCTACAAACA+GGG | 0.575205 | 3.1:-21986494 | None:intergenic |
TTCCTTTCGTACTCATAACA+CGG | 0.576260 | 3.1:-21986507 | None:intergenic |
ACCGTGAAACATATCTGGAC+AGG | 0.576330 | 3.1:+21988384 | MS.gene61873:CDS |
GGCCGTGTTATGAGTACGAA+AGG | 0.579401 | 3.1:+21986505 | MS.gene61873:CDS |
AATGGCGTATGGGCGAGGTG+AGG | 0.582951 | 3.1:+21987287 | MS.gene61873:CDS |
CTCACCTGAGAGGATGTCAA+TGG | 0.586728 | 3.1:+21987513 | MS.gene61873:CDS |
AGCTGATGTTATGGCGATAG+CGG | 0.587222 | 3.1:+21989046 | MS.gene61873:CDS |
GTAGATTGCTTGCTTTCAAG+TGG | 0.587832 | 3.1:+21988892 | MS.gene61873:intron |
CTTGGAGATCGTGAAGAGGA+TGG | 0.590122 | 3.1:+21987174 | MS.gene61873:CDS |
GGATAAGCCGATGAAGACGT+TGG | 0.593259 | 3.1:+21986386 | None:intergenic |
TAGGATAAATCCATACCGTA+TGG | 0.594537 | 3.1:+21988202 | MS.gene61873:CDS |
TCGGCTAACCGGTGGACAAG+AGG | 0.598073 | 3.1:+21987359 | MS.gene61873:CDS |
CATCTCCTGTAAATGCTCGC+GGG | 0.600452 | 3.1:+21987536 | MS.gene61873:CDS |
CACATTCCTCGGCTAACCGG+TGG | 0.601665 | 3.1:+21987351 | MS.gene61873:CDS |
AGAATAATGACCATACGGTA+TGG | 0.604646 | 3.1:-21988212 | None:intergenic |
ACCGTATGGTCATTATTCTG+CGG | 0.607361 | 3.1:+21988216 | MS.gene61873:CDS |
GCCGCAGAATAATGACCATA+CGG | 0.609025 | 3.1:-21988217 | None:intergenic |
GCATCTCCTGTAAATGCTCG+CGG | 0.611021 | 3.1:+21987535 | MS.gene61873:CDS |
ATCACAACCCATGTTTGTCA+CGG | 0.612478 | 3.1:-21988964 | None:intergenic |
TAGATTGCTTGCTTTCAAGT+GGG | 0.614620 | 3.1:+21988893 | MS.gene61873:intron |
AATACTGCTCCAATGAGCAC+AGG | 0.619120 | 3.1:+21987788 | MS.gene61873:CDS |
TGCTCATACAAATGTAACCA+AGG | 0.622997 | 3.1:-21988993 | None:intergenic |
ACACACGCCGTGACAAACAT+GGG | 0.626500 | 3.1:+21988957 | MS.gene61873:CDS |
TCCCTATGCAGCAAACATCA+GGG | 0.634130 | 3.1:+21987691 | MS.gene61873:intron |
CATTGACATCCTCTCAGGTG+AGG | 0.637861 | 3.1:-21987512 | None:intergenic |
TGAGTTGGCAAATGGCGTAT+GGG | 0.637971 | 3.1:+21987277 | MS.gene61873:CDS |
CAAACACCACAAGCAATGAA+CGG | 0.638229 | 3.1:-21986465 | None:intergenic |
GGTTCACAGGAAGCCATTTG+GGG | 0.639851 | 3.1:-21988364 | None:intergenic |
TCTTGTCCACCGGTTAGCCG+AGG | 0.648285 | 3.1:-21987357 | None:intergenic |
AATTCTTGGAGATCGTGAAG+AGG | 0.657041 | 3.1:+21987170 | MS.gene61873:CDS |
ACACGGCCTACAAACAGGGA+AGG | 0.657850 | 3.1:-21986490 | None:intergenic |
TATCTGCAGCCTCACCTGAG+AGG | 0.670320 | 3.1:+21987503 | MS.gene61873:CDS |
CCAAGTCTGTCAGATTTGTG+GGG | 0.689071 | 3.1:+21986413 | MS.gene61873:CDS |
ACTCGATACAATAAGCACAA+AGG | 0.699220 | 3.1:+21986561 | MS.gene61873:CDS |
GGTAGTGCAAGAAAATGACA+AGG | 0.712905 | 3.1:-21988247 | None:intergenic |
GGAGATCGTGAAGAGGATGG+TGG | 0.741736 | 3.1:+21987177 | MS.gene61873:CDS |
AACATCAGCTAACATCGACG+AGG | 0.769068 | 3.1:-21989033 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTATTTAATAGTTAGTTT+CGG | + | chr3.1:21988527-21988546 | MS.gene61873:intron | 10.0% |
!! | GAAACTAACTATTAAATAAA+TGG | - | chr3.1:21988528-21988547 | None:intergenic | 15.0% |
!! | TAAAAGAAAAACTACAAATT+TGG | - | chr3.1:21988492-21988511 | None:intergenic | 15.0% |
!! | TTACTAGTTATATTTGAAAA+TGG | - | chr3.1:21987113-21987132 | None:intergenic | 15.0% |
!!! | AATGAGTTTGATTTATTAAA+GGG | - | chr3.1:21986670-21986689 | None:intergenic | 15.0% |
!! | AAAATTTATGAAGGAGTTAA+AGG | - | chr3.1:21988686-21988705 | None:intergenic | 20.0% |
!! | ACATTTAATTCAAAATCTGT+TGG | - | chr3.1:21987446-21987465 | None:intergenic | 20.0% |
!! | ATGGAAACAATATTATATAG+AGG | - | chr3.1:21987400-21987419 | None:intergenic | 20.0% |
!! | CAATATTAAAAATACTCGTA+AGG | - | chr3.1:21988613-21988632 | None:intergenic | 20.0% |
!! | CAATGATCTAATCATTTAAA+TGG | - | chr3.1:21986969-21986988 | None:intergenic | 20.0% |
!! | CATTTAATTCAAAATCTGTT+GGG | - | chr3.1:21987445-21987464 | None:intergenic | 20.0% |
!! | GTGCATTATAAAATTTATGA+AGG | - | chr3.1:21988695-21988714 | None:intergenic | 20.0% |
!! | GTTATATTTGAAAATGGTAA+AGG | - | chr3.1:21987107-21987126 | None:intergenic | 20.0% |
!! | TATTGTTCAAATTGATACTA+TGG | - | chr3.1:21987419-21987438 | None:intergenic | 20.0% |
!!! | CTAATCATTTAAATGGTTTT+GGG | - | chr3.1:21986962-21986981 | None:intergenic | 20.0% |
!!! | GAATGAGTTTGATTTATTAA+AGG | - | chr3.1:21986671-21986690 | None:intergenic | 20.0% |
!!! | GTTTTTAACTTATTCTAGTT+TGG | + | chr3.1:21986911-21986930 | MS.gene61873:intron | 20.0% |
!!! | TCTAATCATTTAAATGGTTT+TGG | - | chr3.1:21986963-21986982 | None:intergenic | 20.0% |
!!! | TGTTATCTGATATTGATTTT+AGG | + | chr3.1:21987655-21987674 | MS.gene61873:intron | 20.0% |
!!! | TTTCATATTGGATCTTTTAT+AGG | + | chr3.1:21986610-21986629 | MS.gene61873:intron | 20.0% |
! | AAATCTGTTGTCTTTCATAT+TGG | + | chr3.1:21986598-21986617 | MS.gene61873:intron | 25.0% |
! | ATTTCACTGATGAAACAAAA+TGG | - | chr3.1:21987015-21987034 | None:intergenic | 25.0% |
! | GAAACTTCCTTATCATAATT+TGG | - | chr3.1:21987324-21987343 | None:intergenic | 25.0% |
! | TACAACATATTTATCAGTCA+CGG | - | chr3.1:21988020-21988039 | None:intergenic | 25.0% |
! | TATCAGTTATATGTGAAGTT+TGG | + | chr3.1:21988312-21988331 | MS.gene61873:intron | 25.0% |
! | TGAATTGTACTTGAAATCAT+TGG | - | chr3.1:21987217-21987236 | None:intergenic | 25.0% |
! | TGATTTCCTTAGCAAATAAA+AGG | - | chr3.1:21988444-21988463 | None:intergenic | 25.0% |
!! | ACGCTTATTTAATTGATTTC+AGG | + | chr3.1:21987138-21987157 | MS.gene61873:intron | 25.0% |
!!! | CTTAACACTTTGTTTTGATT+AGG | + | chr3.1:21988129-21988148 | MS.gene61873:intron | 25.0% |
!!! | TTAACTTATTCTAGTTTGGT+TGG | + | chr3.1:21986915-21986934 | MS.gene61873:intron | 25.0% |
AAACAGCACACATTCTTATT+GGG | - | chr3.1:21987904-21987923 | None:intergenic | 30.0% | |
AAATCAATTATGGCTCAGTT+TGG | - | chr3.1:21988781-21988800 | None:intergenic | 30.0% | |
ATAAGCACAAAGGTAAAGTA+TGG | + | chr3.1:21986571-21986590 | MS.gene61873:intron | 30.0% | |
ATAGATCAAGCAGTTTGAAT+GGG | - | chr3.1:21986847-21986866 | None:intergenic | 30.0% | |
ATCTACGAATTTCTTGAATG+AGG | - | chr3.1:21988878-21988897 | None:intergenic | 30.0% | |
CAAACTCATTCTTTCATTCT+TGG | + | chr3.1:21986680-21986699 | MS.gene61873:intron | 30.0% | |
CTTGGTTATATCAACTATGA+AGG | - | chr3.1:21988832-21988851 | None:intergenic | 30.0% | |
GAGTTAAAGGAGAAAGTTTA+TGG | - | chr3.1:21988673-21988692 | None:intergenic | 30.0% | |
TAAGCACAAAGGTAAAGTAT+GGG | + | chr3.1:21986572-21986591 | MS.gene61873:intron | 30.0% | |
TATAGATCAAGCAGTTTGAA+TGG | - | chr3.1:21986848-21986867 | None:intergenic | 30.0% | |
TATCTTCTATTTCAGACATC+TGG | + | chr3.1:21987475-21987494 | MS.gene61873:intron | 30.0% | |
TATGGATTTATCCTAGAAGA+TGG | - | chr3.1:21988197-21988216 | None:intergenic | 30.0% | |
TCTGCAACTCAAATCAATTA+TGG | - | chr3.1:21988791-21988810 | None:intergenic | 30.0% | |
TGATGCTCCAAATTATGATA+AGG | + | chr3.1:21987314-21987333 | MS.gene61873:CDS | 30.0% | |
TTAAGATCAGACGAATATGA+TGG | - | chr3.1:21987580-21987599 | None:intergenic | 30.0% | |
! | CTTCATAGTTGATATAACCA+AGG | + | chr3.1:21988830-21988849 | MS.gene61873:intron | 30.0% |
! | GTTCTTTGATTGTATCGTTT+TGG | - | chr3.1:21989096-21989115 | None:intergenic | 30.0% |
!! | ATTTGAGTTGCAGATATGAT+CGG | + | chr3.1:21988797-21988816 | MS.gene61873:intron | 30.0% |
!! | CATGATTAGTTCTATGACTT+AGG | + | chr3.1:21986871-21986890 | MS.gene61873:intron | 30.0% |
AAAAGGAGAGTCAAAACTCA+AGG | - | chr3.1:21988427-21988446 | None:intergenic | 35.0% | |
AAAGGAGAGTCAAAACTCAA+GGG | - | chr3.1:21988426-21988445 | None:intergenic | 35.0% | |
ACTCGATACAATAAGCACAA+AGG | + | chr3.1:21986561-21986580 | MS.gene61873:CDS | 35.0% | |
AGAATAATGACCATACGGTA+TGG | - | chr3.1:21988215-21988234 | None:intergenic | 35.0% | |
AGGTTTCTATTCCATCTTCT+AGG | + | chr3.1:21988183-21988202 | MS.gene61873:CDS | 35.0% | |
AGTGACTTTGCTTGAGTAAA+CGG | - | chr3.1:21986780-21986799 | None:intergenic | 35.0% | |
ATGAGTACGAAAGGAAAGAT+GGG | + | chr3.1:21986514-21986533 | MS.gene61873:CDS | 35.0% | |
CAGATTTGTGGGGATAATAT+CGG | + | chr3.1:21986423-21986442 | MS.gene61873:CDS | 35.0% | |
CTGATCCAATATCCAAGAAA+AGG | - | chr3.1:21988342-21988361 | None:intergenic | 35.0% | |
GAAACAGCACACATTCTTAT+TGG | - | chr3.1:21987905-21987924 | None:intergenic | 35.0% | |
GAGTTTCATAACTGCTGAAA+AGG | - | chr3.1:21987984-21988003 | None:intergenic | 35.0% | |
TAGGATAAATCCATACCGTA+TGG | + | chr3.1:21988202-21988221 | MS.gene61873:CDS | 35.0% | |
TATGAGTACGAAAGGAAAGA+TGG | + | chr3.1:21986513-21986532 | MS.gene61873:CDS | 35.0% | |
TGCTCATACAAATGTAACCA+AGG | - | chr3.1:21988996-21989015 | None:intergenic | 35.0% | |
TTCCTTTCGTACTCATAACA+CGG | - | chr3.1:21986510-21986529 | None:intergenic | 35.0% | |
TTTCTCACAATCACATTCCT+CGG | + | chr3.1:21987340-21987359 | MS.gene61873:CDS | 35.0% | |
TTTGCTTGAGTAAACGGTAA+TGG | - | chr3.1:21986774-21986793 | None:intergenic | 35.0% | |
! | AATATCGGTAGTGCTGTTAA+TGG | + | chr3.1:21986438-21986457 | MS.gene61873:CDS | 35.0% |
! | ATGTGTATAGTTTGTGAGTG+AGG | - | chr3.1:21987619-21987638 | None:intergenic | 35.0% |
! | GGTGTGTCATTATTATTGCA+AGG | + | chr3.1:21988923-21988942 | MS.gene61873:CDS | 35.0% |
! | GTTTGCCTTTTCTTGGATAT+TGG | + | chr3.1:21988334-21988353 | MS.gene61873:intron | 35.0% |
! | TAGATTGCTTGCTTTCAAGT+GGG | + | chr3.1:21988893-21988912 | MS.gene61873:intron | 35.0% |
! | TGTGTATAGTTTGTGAGTGA+GGG | - | chr3.1:21987618-21987637 | None:intergenic | 35.0% |
!! | ATACAGAAGTACTCACAACA+AGG | - | chr3.1:21987879-21987898 | None:intergenic | 35.0% |
!! | GACTCTCCTTTTATTTGCTA+AGG | + | chr3.1:21988435-21988454 | MS.gene61873:intron | 35.0% |
!! | TTCTGCGATCTTTTGCTTTT+GGG | - | chr3.1:21987250-21987269 | None:intergenic | 35.0% |
!! | TTTGAGTTGCAGATATGATC+GGG | + | chr3.1:21988798-21988817 | MS.gene61873:intron | 35.0% |
!!! | AAGTTTGGTTTGCCTTTTCT+TGG | + | chr3.1:21988327-21988346 | MS.gene61873:intron | 35.0% |
AACCACAACGCATAAGCATT+GGG | - | chr3.1:21988290-21988309 | None:intergenic | 40.0% | |
AATTCTTGGAGATCGTGAAG+AGG | + | chr3.1:21987170-21987189 | MS.gene61873:CDS | 40.0% | |
ACCGTATGGTCATTATTCTG+CGG | + | chr3.1:21988216-21988235 | MS.gene61873:CDS | 40.0% | |
AGATATGTTTCACGGTTCAC+AGG | - | chr3.1:21988380-21988399 | None:intergenic | 40.0% | |
ATAGAAACCTTCCTCGAAAG+TGG | - | chr3.1:21988173-21988192 | None:intergenic | 40.0% | |
ATCACAACCCATGTTTGTCA+CGG | - | chr3.1:21988967-21988986 | None:intergenic | 40.0% | |
ATCGACGAGGTTAATCTAGT+CGG | - | chr3.1:21989023-21989042 | None:intergenic | 40.0% | |
ATCTGGACAGGCTTTCATTA+AGG | + | chr3.1:21988396-21988415 | MS.gene61873:CDS | 40.0% | |
CAAAAGAGCTAGTAGCAATG+AGG | - | chr3.1:21987942-21987961 | None:intergenic | 40.0% | |
CAAACACCACAAGCAATGAA+CGG | - | chr3.1:21986468-21986487 | None:intergenic | 40.0% | |
GCTTGGAAAGAAAGAGTTGA+TGG | + | chr3.1:21987740-21987759 | MS.gene61873:CDS | 40.0% | |
GGAATCGAATCAATCGATGA+AGG | + | chr3.1:21986701-21986720 | MS.gene61873:intron | 40.0% | |
GGTAGTGCAAGAAAATGACA+AGG | - | chr3.1:21988250-21988269 | None:intergenic | 40.0% | |
GTAATGGCACAGATCAGTAT+TGG | - | chr3.1:21986758-21986777 | None:intergenic | 40.0% | |
GTAGATTGCTTGCTTTCAAG+TGG | + | chr3.1:21988892-21988911 | MS.gene61873:intron | 40.0% | |
GTCGATGTTAGCTGATGTTA+TGG | + | chr3.1:21989037-21989056 | MS.gene61873:CDS | 40.0% | |
TAACCACAACGCATAAGCAT+TGG | - | chr3.1:21988291-21988310 | None:intergenic | 40.0% | |
TATTGGATCAGTTCCCCAAA+TGG | + | chr3.1:21988351-21988370 | MS.gene61873:intron | 40.0% | |
TGGGTACGGGATTTGTAATT+CGG | - | chr3.1:21988271-21988290 | None:intergenic | 40.0% | |
TGTGAACCGTGAAACATATC+TGG | + | chr3.1:21988379-21988398 | MS.gene61873:CDS | 40.0% | |
! | ATCGAAAAGCACATCAGTAC+TGG | - | chr3.1:21987852-21987871 | None:intergenic | 40.0% |
! | GCTACTTCTGAAAGAGGAAT+AGG | + | chr3.1:21987815-21987834 | MS.gene61873:CDS | 40.0% |
! | GGATCTTTTATAGGCATGTC+AGG | + | chr3.1:21986619-21986638 | MS.gene61873:intron | 40.0% |
! | GTGTATAGTTTGTGAGTGAG+GGG | - | chr3.1:21987617-21987636 | None:intergenic | 40.0% |
! | GTTCTGCGATCTTTTGCTTT+TGG | - | chr3.1:21987251-21987270 | None:intergenic | 40.0% |
! | TGCTTTCAAGTGGGAAGTTA+AGG | + | chr3.1:21988902-21988921 | MS.gene61873:CDS | 40.0% |
! | TGTATCGAGTTTTGCACTGA+GGG | - | chr3.1:21986551-21986570 | None:intergenic | 40.0% |
! | TTGTATCGAGTTTTGCACTG+AGG | - | chr3.1:21986552-21986571 | None:intergenic | 40.0% |
!! | CTCATTGCTACTAGCTCTTT+TGG | + | chr3.1:21987940-21987959 | MS.gene61873:intron | 40.0% |
!! | GTGTGCTGTTTCATTTCTGT+TGG | + | chr3.1:21987913-21987932 | MS.gene61873:intron | 40.0% |
AACATCAGCTAACATCGACG+AGG | - | chr3.1:21989036-21989055 | None:intergenic | 45.0% | |
AATACTGCTCCAATGAGCAC+AGG | + | chr3.1:21987788-21987807 | MS.gene61873:CDS | 45.0% | |
AATCACATTCCTCGGCTAAC+CGG | + | chr3.1:21987348-21987367 | MS.gene61873:CDS | 45.0% | |
ACCGTGAAACATATCTGGAC+AGG | + | chr3.1:21988384-21988403 | MS.gene61873:CDS | 45.0% | |
AGCCAAGTCTGTCAGATTTG+TGG | + | chr3.1:21986411-21986430 | MS.gene61873:CDS | 45.0% | |
AGCTGATGTTATGGCGATAG+CGG | + | chr3.1:21989046-21989065 | MS.gene61873:CDS | 45.0% | |
AGTTGCAGATATGATCGGGA+AGG | + | chr3.1:21988802-21988821 | MS.gene61873:intron | 45.0% | |
CAAGCTACATTACCCAATCC+TGG | - | chr3.1:21987725-21987744 | None:intergenic | 45.0% | |
CAATCGATGAAGGACAGTGT+TGG | + | chr3.1:21986711-21986730 | MS.gene61873:intron | 45.0% | |
CAGGATTGGGTAATGTAGCT+TGG | + | chr3.1:21987723-21987742 | MS.gene61873:CDS | 45.0% | |
CATAACACGGCCTACAAACA+GGG | - | chr3.1:21986497-21986516 | None:intergenic | 45.0% | |
CCAAGTCTGTCAGATTTGTG+GGG | + | chr3.1:21986413-21986432 | MS.gene61873:CDS | 45.0% | |
GCCAAGTCTGTCAGATTTGT+GGG | + | chr3.1:21986412-21986431 | MS.gene61873:CDS | 45.0% | |
GCCGCAGAATAATGACCATA+CGG | - | chr3.1:21988220-21988239 | None:intergenic | 45.0% | |
GCCTGTCCAGATATGTTTCA+CGG | - | chr3.1:21988388-21988407 | None:intergenic | 45.0% | |
GTTGCAGATATGATCGGGAA+GGG | + | chr3.1:21988803-21988822 | MS.gene61873:intron | 45.0% | |
TACCCAATGCTTATGCGTTG+TGG | + | chr3.1:21988285-21988304 | MS.gene61873:intron | 45.0% | |
TCACGATCTCCAAGAATTGC+AGG | - | chr3.1:21987168-21987187 | None:intergenic | 45.0% | |
TCAGGTAGTCCTGCAATTCT+TGG | + | chr3.1:21987156-21987175 | MS.gene61873:intron | 45.0% | |
TCATAACACGGCCTACAAAC+AGG | - | chr3.1:21986498-21986517 | None:intergenic | 45.0% | |
TCCCTATGCAGCAAACATCA+GGG | + | chr3.1:21987691-21987710 | MS.gene61873:intron | 45.0% | |
TCGACGAGGTTAATCTAGTC+GGG | - | chr3.1:21989022-21989041 | None:intergenic | 45.0% | |
TCTATGACTTAGGAGACTGC+TGG | + | chr3.1:21986881-21986900 | MS.gene61873:intron | 45.0% | |
TTCCCTATGCAGCAAACATC+AGG | + | chr3.1:21987690-21987709 | MS.gene61873:intron | 45.0% | |
TTGAACAACCTCTTGTCCAC+CGG | - | chr3.1:21987370-21987389 | None:intergenic | 45.0% | |
TTGCAGATATGATCGGGAAG+GGG | + | chr3.1:21988804-21988823 | MS.gene61873:intron | 45.0% | |
TTTGTGCCTTCCCTGTTTGT+AGG | + | chr3.1:21986484-21986503 | MS.gene61873:CDS | 45.0% | |
! | AACCCTGATGTTTGCTGCAT+AGG | - | chr3.1:21987696-21987715 | None:intergenic | 45.0% |
! | ACCCTGATGTTTGCTGCATA+GGG | - | chr3.1:21987695-21987714 | None:intergenic | 45.0% |
! | GGTCAAGCTACTTCTGAAAG+AGG | + | chr3.1:21987809-21987828 | MS.gene61873:CDS | 45.0% |
! | TGAGTTGGCAAATGGCGTAT+GGG | + | chr3.1:21987277-21987296 | MS.gene61873:CDS | 45.0% |
!! | AACGCATAAGCATTGGGTAC+GGG | - | chr3.1:21988284-21988303 | None:intergenic | 45.0% |
!! | ACGCATGTTGAGTTGGCAAA+TGG | + | chr3.1:21987269-21987288 | MS.gene61873:CDS | 45.0% |
!! | CAACGCATAAGCATTGGGTA+CGG | - | chr3.1:21988285-21988304 | None:intergenic | 45.0% |
!! | GCACAGATCAGTATTGGTAG+CGG | - | chr3.1:21986752-21986771 | None:intergenic | 45.0% |
!! | GGAAAGAAAGAGTTGATGGC+TGG | + | chr3.1:21987744-21987763 | MS.gene61873:CDS | 45.0% |
!! | TATGGCGATAGCGGAAGTTA+AGG | + | chr3.1:21989055-21989074 | MS.gene61873:CDS | 45.0% |
!! | TTGAGTTGGCAAATGGCGTA+TGG | + | chr3.1:21987276-21987295 | MS.gene61873:CDS | 45.0% |
AACATCAGGGTTGCTGAACC+AGG | + | chr3.1:21987704-21987723 | MS.gene61873:CDS | 50.0% | |
AAGCTCGACAACCACTTTCG+AGG | + | chr3.1:21988159-21988178 | MS.gene61873:CDS | 50.0% | |
ACACACGCCGTGACAAACAT+GGG | + | chr3.1:21988957-21988976 | MS.gene61873:CDS | 50.0% | |
ACCAAGGACAAGAGTCTTGC+TGG | + | chr3.1:21988846-21988865 | MS.gene61873:intron | 50.0% | |
ACCAGCAAGACTCTTGTCCT+TGG | - | chr3.1:21988850-21988869 | None:intergenic | 50.0% | |
ACGGTTCACAGGAAGCCATT+TGG | - | chr3.1:21988369-21988388 | None:intergenic | 50.0% | |
ACTTCTCCACAAGCACTTGC+AGG | + | chr3.1:21988553-21988572 | MS.gene61873:intron | 50.0% | |
AGGGTTGCTGAACCAGGATT+GGG | + | chr3.1:21987710-21987729 | MS.gene61873:CDS | 50.0% | |
CATCTCCTGTAAATGCTCGC+GGG | + | chr3.1:21987536-21987555 | MS.gene61873:CDS | 50.0% | |
CATTGACATCCTCTCAGGTG+AGG | - | chr3.1:21987515-21987534 | None:intergenic | 50.0% | |
CCCCACAAATCTGACAGACT+TGG | - | chr3.1:21986416-21986435 | None:intergenic | 50.0% | |
CGGTTCACAGGAAGCCATTT+GGG | - | chr3.1:21988368-21988387 | None:intergenic | 50.0% | |
CTCACCTGAGAGGATGTCAA+TGG | + | chr3.1:21987513-21987532 | MS.gene61873:CDS | 50.0% | |
CTTGGAGATCGTGAAGAGGA+TGG | + | chr3.1:21987174-21987193 | MS.gene61873:CDS | 50.0% | |
GATGCCATTGACATCCTCTC+AGG | - | chr3.1:21987520-21987539 | None:intergenic | 50.0% | |
GCATCTCCTGTAAATGCTCG+CGG | + | chr3.1:21987535-21987554 | MS.gene61873:CDS | 50.0% | |
GGCCGTGTTATGAGTACGAA+AGG | + | chr3.1:21986505-21986524 | MS.gene61873:CDS | 50.0% | |
GGTTCACAGGAAGCCATTTG+GGG | - | chr3.1:21988367-21988386 | None:intergenic | 50.0% | |
GTAGCTTGACCTGTGCTCAT+TGG | - | chr3.1:21987800-21987819 | None:intergenic | 50.0% | |
TACACACGCCGTGACAAACA+TGG | + | chr3.1:21988956-21988975 | MS.gene61873:CDS | 50.0% | |
TCCACAAGCACTTGCAGGAA+AGG | + | chr3.1:21988558-21988577 | MS.gene61873:intron | 50.0% | |
TCCTTTCCTGCAAGTGCTTG+TGG | - | chr3.1:21988562-21988581 | None:intergenic | 50.0% | |
TCGACAACCACTTTCGAGGA+AGG | + | chr3.1:21988163-21988182 | MS.gene61873:CDS | 50.0% | |
TCGCAGAACGCATGTTGAGT+TGG | + | chr3.1:21987262-21987281 | MS.gene61873:CDS | 50.0% | |
TGGGTTGTGATCACACTCCT+TGG | + | chr3.1:21988976-21988995 | MS.gene61873:CDS | 50.0% | |
!! | CGATGAAGGACAGTGTTGGT+AGG | + | chr3.1:21986715-21986734 | MS.gene61873:intron | 50.0% |
ACACGGCCTACAAACAGGGA+AGG | - | chr3.1:21986493-21986512 | None:intergenic | 55.0% | |
CAGGGTTGCTGAACCAGGAT+TGG | + | chr3.1:21987709-21987728 | MS.gene61873:CDS | 55.0% | |
CGTTTCCCGCGAGCATTTAC+AGG | - | chr3.1:21987544-21987563 | None:intergenic | 55.0% | |
GGAGATCGTGAAGAGGATGG+TGG | + | chr3.1:21987177-21987196 | MS.gene61873:CDS | 55.0% | |
GGCGATCCGTTCATTGCTTG+TGG | + | chr3.1:21986459-21986478 | MS.gene61873:CDS | 55.0% | |
TATCTGCAGCCTCACCTGAG+AGG | + | chr3.1:21987503-21987522 | MS.gene61873:CDS | 55.0% | |
AATGGCGTATGGGCGAGGTG+AGG | + | chr3.1:21987287-21987306 | MS.gene61873:CDS | 60.0% | |
CACATTCCTCGGCTAACCGG+TGG | + | chr3.1:21987351-21987370 | MS.gene61873:CDS | 60.0% | |
TCGGCTAACCGGTGGACAAG+AGG | + | chr3.1:21987359-21987378 | MS.gene61873:CDS | 60.0% | |
TGGCAAATGGCGTATGGGCG+AGG | + | chr3.1:21987282-21987301 | MS.gene61873:CDS | 60.0% | |
! | TCTTGTCCACCGGTTAGCCG+AGG | - | chr3.1:21987360-21987379 | None:intergenic | 60.0% |
GGCGTATGGGCGAGGTGAGG+AGG | + | chr3.1:21987290-21987309 | MS.gene61873:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 21986396 | 21989142 | 21986396 | ID=MS.gene61873 |
chr3.1 | mRNA | 21986396 | 21989142 | 21986396 | ID=MS.gene61873.t1;Parent=MS.gene61873 |
chr3.1 | exon | 21986396 | 21986582 | 21986396 | ID=MS.gene61873.t1.exon1;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21986396 | 21986582 | 21986396 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21987160 | 21987380 | 21987160 | ID=MS.gene61873.t1.exon2;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21987160 | 21987380 | 21987160 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21987490 | 21987607 | 21987490 | ID=MS.gene61873.t1.exon3;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21987490 | 21987607 | 21987490 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21987702 | 21987882 | 21987702 | ID=MS.gene61873.t1.exon4;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21987702 | 21987882 | 21987702 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21988151 | 21988283 | 21988151 | ID=MS.gene61873.t1.exon5;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21988151 | 21988283 | 21988151 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21988362 | 21988417 | 21988362 | ID=MS.gene61873.t1.exon6;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21988362 | 21988417 | 21988362 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
chr3.1 | exon | 21988896 | 21989142 | 21988896 | ID=MS.gene61873.t1.exon7;Parent=MS.gene61873.t1 |
chr3.1 | CDS | 21988896 | 21989142 | 21988896 | ID=cds.MS.gene61873.t1;Parent=MS.gene61873.t1 |
Gene Sequence |
Protein sequence |