Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62191.t1 | XP_013460710.1 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 1.20E-289 | 1005 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62191.t1 | A0A072UY59 | 96.9 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 8.8e-290 | 1005.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050638 | MS.gene62191 | 0.832089 | 1.15E-55 | -1.69E-46 |
| MS.gene052066 | MS.gene62191 | 0.81594 | 7.14E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene62191 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene05995 | MS.gene62191 | 0.818773 | 1.65E-52 | -1.69E-46 |
| MS.gene05996 | MS.gene62191 | 0.805656 | 1.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62191.t1 | MTR_3g068125 | 96.933 | 489 | 15 | 0 | 1 | 489 | 1 | 489 | 0.0 | 1000 |
| MS.gene62191.t1 | MTR_7g063090 | 49.016 | 508 | 239 | 9 | 1 | 488 | 1 | 508 | 1.03e-169 | 488 |
| MS.gene62191.t1 | MTR_8g028765 | 48.434 | 415 | 205 | 5 | 82 | 489 | 77 | 489 | 3.19e-139 | 410 |
| MS.gene62191.t1 | MTR_7g078320 | 47.596 | 416 | 207 | 7 | 82 | 489 | 77 | 489 | 5.96e-127 | 378 |
| MS.gene62191.t1 | MTR_5g010070 | 46.959 | 411 | 208 | 6 | 82 | 485 | 82 | 489 | 1.34e-126 | 377 |
| MS.gene62191.t1 | MTR_8g098835 | 46.359 | 412 | 210 | 7 | 82 | 485 | 105 | 513 | 2.03e-125 | 375 |
| MS.gene62191.t1 | MTR_4g046680 | 44.068 | 413 | 217 | 7 | 82 | 489 | 74 | 477 | 8.49e-121 | 362 |
| MS.gene62191.t1 | MTR_2g095970 | 44.712 | 416 | 218 | 7 | 82 | 489 | 132 | 543 | 1.32e-118 | 359 |
| MS.gene62191.t1 | MTR_4g061590 | 45.278 | 413 | 215 | 7 | 82 | 485 | 107 | 517 | 1.77e-118 | 358 |
| MS.gene62191.t1 | MTR_2g088940 | 44.391 | 419 | 215 | 7 | 81 | 487 | 56 | 468 | 6.83e-112 | 339 |
| MS.gene62191.t1 | MTR_2g088940 | 44.153 | 419 | 218 | 7 | 81 | 487 | 56 | 470 | 2.16e-111 | 338 |
| MS.gene62191.t1 | MTR_4g046677 | 41.667 | 420 | 236 | 5 | 75 | 487 | 56 | 473 | 4.35e-109 | 332 |
| MS.gene62191.t1 | MTR_5g008060 | 43.077 | 390 | 210 | 4 | 83 | 461 | 126 | 514 | 1.72e-104 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62191.t1 | AT3G11420 | 52.610 | 498 | 211 | 7 | 10 | 487 | 13 | 505 | 0.0 | 521 |
| MS.gene62191.t1 | AT2G37730 | 52.278 | 417 | 189 | 5 | 82 | 488 | 96 | 512 | 1.32e-164 | 476 |
| MS.gene62191.t1 | AT5G41460 | 43.885 | 417 | 222 | 6 | 82 | 489 | 110 | 523 | 2.69e-123 | 370 |
| MS.gene62191.t1 | AT4G23490 | 44.762 | 420 | 217 | 8 | 82 | 489 | 109 | 525 | 5.84e-123 | 369 |
| MS.gene62191.t1 | AT4G15240 | 45.012 | 431 | 218 | 9 | 70 | 489 | 64 | 486 | 3.51e-118 | 356 |
| MS.gene62191.t1 | AT4G11350 | 41.270 | 441 | 243 | 8 | 63 | 489 | 68 | 506 | 1.62e-116 | 352 |
| MS.gene62191.t1 | AT1G33250 | 43.350 | 406 | 218 | 4 | 67 | 461 | 114 | 518 | 1.82e-116 | 353 |
| MS.gene62191.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 53 | 471 | 7.84e-115 | 347 |
| MS.gene62191.t1 | AT1G01570 | 44.076 | 422 | 215 | 11 | 82 | 485 | 84 | 502 | 2.61e-114 | 347 |
| MS.gene62191.t1 | AT1G05280 | 42.553 | 423 | 229 | 7 | 81 | 489 | 67 | 489 | 7.27e-112 | 340 |
| MS.gene62191.t1 | AT1G07850 | 46.814 | 408 | 206 | 7 | 82 | 481 | 123 | 527 | 8.43e-112 | 341 |
| MS.gene62191.t1 | AT1G05280 | 43.603 | 383 | 203 | 6 | 81 | 450 | 67 | 449 | 1.81e-103 | 317 |
| MS.gene62191.t1 | AT4G00295 | 48.512 | 336 | 161 | 6 | 82 | 405 | 78 | 413 | 2.02e-100 | 310 |
| MS.gene62191.t1 | AT5G12460 | 35.817 | 416 | 248 | 7 | 81 | 487 | 35 | 440 | 1.97e-91 | 285 |
| MS.gene62191.t1 | AT4G11350 | 48.230 | 226 | 107 | 4 | 63 | 278 | 68 | 293 | 6.74e-63 | 207 |
Find 110 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGATACTATTATTATTA+TGG | 0.181752 | 3.2:+62796617 | MS.gene62191:CDS |
| TAGGCAATGCTGCAACTTTA+TGG | 0.202911 | 3.2:+62797803 | MS.gene62191:CDS |
| AGTACATTCTTCCAATATTC+TGG | 0.221242 | 3.2:-62797320 | None:intergenic |
| TCAATTGCACCCGGTGTTTC+CGG | 0.229748 | 3.2:+62796884 | MS.gene62191:CDS |
| CATTCTTATGATATGGCTTT+TGG | 0.252514 | 3.2:+62796527 | MS.gene62191:CDS |
| TGTTATGCATTCTTATGATA+TGG | 0.258668 | 3.2:+62796520 | MS.gene62191:CDS |
| CTTGTCAACATGTCTCTTAT+AGG | 0.267306 | 3.2:-62797228 | None:intergenic |
| GATGGTCAATATCTATTTCT+TGG | 0.284894 | 3.2:+62797006 | MS.gene62191:CDS |
| TGGGCCTGTGTAAACGAATT+AGG | 0.288879 | 3.2:+62796656 | MS.gene62191:CDS |
| CTTTGCTGCACTATCCTTGC+AGG | 0.301406 | 3.2:-62796960 | None:intergenic |
| ATGGTTCTGATCAAAGAGTT+TGG | 0.320612 | 3.2:+62796636 | MS.gene62191:CDS |
| TTCTTTCAGCTTGACATTAG+AGG | 0.320745 | 3.2:+62796798 | MS.gene62191:intron |
| AGACCGATGGTTTCCATTAC+CGG | 0.321789 | 3.2:+62796049 | MS.gene62191:CDS |
| ATGGTCAATATCTATTTCTT+GGG | 0.336226 | 3.2:+62797007 | MS.gene62191:CDS |
| AAAGCGTTTGTTACGATCAT+AGG | 0.351519 | 3.2:+62796979 | MS.gene62191:CDS |
| AGCTAGACTAGCCAATATTA+TGG | 0.361476 | 3.2:+62796583 | MS.gene62191:CDS |
| AAGACAAGAATCCATAATAT+TGG | 0.372930 | 3.2:-62796594 | None:intergenic |
| TGGTTCTGATCAAAGAGTTT+GGG | 0.381224 | 3.2:+62796637 | MS.gene62191:CDS |
| TCGTCCGGCTTCAAATTCTT+TGG | 0.392591 | 3.2:-62796251 | None:intergenic |
| TGAAGCTGGATCCAGAATAT+TGG | 0.394541 | 3.2:+62797309 | MS.gene62191:CDS |
| GAAGTGTGCATATCAGAATA+AGG | 0.398327 | 3.2:+62797847 | MS.gene62191:CDS |
| ATTACAAACCACCTAACATT+TGG | 0.398470 | 3.2:-62796386 | None:intergenic |
| AATGTTAGGTGGTTTGTAAT+GGG | 0.399701 | 3.2:+62796389 | MS.gene62191:CDS |
| AACATCTCACATATTGTATT+CGG | 0.400973 | 3.2:+62796128 | MS.gene62191:CDS |
| ACAATATGTGAGATGTTTGT+AGG | 0.401191 | 3.2:-62796122 | None:intergenic |
| GACTTGGTTTGCCAAATGTT+AGG | 0.401562 | 3.2:+62796375 | MS.gene62191:CDS |
| ACATGTAAATGCTCCGGTAA+TGG | 0.419091 | 3.2:-62796062 | None:intergenic |
| TAAAGTTTCTGCCTTGAAGC+TGG | 0.424979 | 3.2:+62797295 | MS.gene62191:CDS |
| GAGAATTTAGTTACTGTGTT+GGG | 0.433829 | 3.2:+62796437 | MS.gene62191:CDS |
| CAACACAGTAACTAAATTCT+CGG | 0.435773 | 3.2:-62796435 | None:intergenic |
| GATGGCTGCTGGCATACGTC+AGG | 0.438417 | 3.2:-62797155 | None:intergenic |
| CTGGTTTAGCGAATGTTGAA+TGG | 0.440363 | 3.2:-62796028 | None:intergenic |
| CAAGTGATATCGATGCTATA+AGG | 0.444451 | 3.2:-62796001 | None:intergenic |
| AACACAGTAACTAAATTCTC+GGG | 0.445312 | 3.2:-62796434 | None:intergenic |
| CAGGTTAGCAAGGCGAGGAC+TGG | 0.447016 | 3.2:+62797194 | MS.gene62191:CDS |
| GTTTGTAGGTATTGTATCAA+TGG | 0.455882 | 3.2:-62796108 | None:intergenic |
| GAAGACATTTGACTTTGGTC+CGG | 0.464283 | 3.2:-62796903 | None:intergenic |
| TATGGATGGAGGAAGCATAA+AGG | 0.473984 | 3.2:+62797821 | MS.gene62191:CDS |
| TGCACTCTGCATCTGCAGTT+CGG | 0.475113 | 3.2:+62796324 | MS.gene62191:CDS |
| TCTTTCAGCTTGACATTAGA+GGG | 0.478025 | 3.2:+62796799 | MS.gene62191:intron |
| CTGATGGAATCCTCTTTCTC+TGG | 0.479756 | 3.2:-62796690 | None:intergenic |
| AAATGTTAGGTGGTTTGTAA+TGG | 0.483649 | 3.2:+62796388 | MS.gene62191:CDS |
| CATATTGTATTCGGCATCGC+TGG | 0.484108 | 3.2:+62796137 | MS.gene62191:CDS |
| ATATTCTGGATCCAGCTTCA+AGG | 0.484846 | 3.2:-62797306 | None:intergenic |
| GTTACGATCATAGGCGAAGA+TGG | 0.485744 | 3.2:+62796988 | MS.gene62191:CDS |
| TGCGCGGCTAAAAGACCATA+TGG | 0.489054 | 3.2:-62796825 | None:intergenic |
| GTAGCAACTACAGCAAGCTT+TGG | 0.489072 | 3.2:+62796183 | MS.gene62191:CDS |
| ATCAATTGTATTATGTTGGT+GGG | 0.494583 | 3.2:+62796474 | MS.gene62191:CDS |
| TTAATGAAGACATTTGACTT+TGG | 0.494866 | 3.2:-62796908 | None:intergenic |
| CACAGGGATGGACTAAGTTC+AGG | 0.495648 | 3.2:+62796297 | MS.gene62191:CDS |
| AATCAATTGTATTATGTTGG+TGG | 0.497202 | 3.2:+62796473 | MS.gene62191:CDS |
| CGAGAATTTAGTTACTGTGT+TGG | 0.501043 | 3.2:+62796436 | MS.gene62191:CDS |
| AAGAAGTGCAAGAGAGCAGA+TGG | 0.501500 | 3.2:+62797257 | MS.gene62191:CDS |
| GCAACTACAGCAAGCTTTGG+TGG | 0.504940 | 3.2:+62796186 | MS.gene62191:CDS |
| GTATCTCTTACCAGAGAAAG+AGG | 0.506069 | 3.2:+62796680 | MS.gene62191:CDS |
| TCGCCTTGCTAACCTGATCC+AGG | 0.517031 | 3.2:-62797187 | None:intergenic |
| CTTTCACGTTTAATACTCGA+TGG | 0.519089 | 3.2:+62797126 | MS.gene62191:CDS |
| GTTTCATTCTCAATAAGAGT+TGG | 0.520650 | 3.2:+62795966 | MS.gene62191:CDS |
| GACATTAGAGGGAATCCATA+TGG | 0.523887 | 3.2:+62796810 | MS.gene62191:CDS |
| TGTATAACATGTAAATGCTC+CGG | 0.525305 | 3.2:-62796068 | None:intergenic |
| CACAATCAATTGTATTATGT+TGG | 0.531738 | 3.2:+62796470 | MS.gene62191:CDS |
| GACTTTGGTCCGGAAACACC+GGG | 0.532438 | 3.2:-62796893 | None:intergenic |
| GCACTATCCTTGCAGGGTCA+AGG | 0.533225 | 3.2:-62796953 | None:intergenic |
| TGACTTTGGTCCGGAAACAC+CGG | 0.538833 | 3.2:-62796894 | None:intergenic |
| TATGGAATTAGCATATCGTC+CGG | 0.541449 | 3.2:-62796266 | None:intergenic |
| GGTAATGGAAACCATCGGTC+TGG | 0.541977 | 3.2:-62796047 | None:intergenic |
| CATTGCAGACGTTTAAAACA+TGG | 0.544137 | 3.2:+62797084 | MS.gene62191:CDS |
| CAATGCTGCAACTTTATGGA+TGG | 0.549920 | 3.2:+62797807 | MS.gene62191:CDS |
| CAGAGAAAGAGGATTCCATC+AGG | 0.551061 | 3.2:+62796691 | MS.gene62191:CDS |
| GATGGAGGAAGCATAAAGGA+TGG | 0.551195 | 3.2:+62797825 | MS.gene62191:CDS |
| ACACCGGGTGCAATTGATCA+AGG | 0.552142 | 3.2:-62796878 | None:intergenic |
| AAGAGACATGTTGACAAGGA+AGG | 0.554279 | 3.2:+62797233 | MS.gene62191:CDS |
| ACAAAACCTCTGCAAGCAGT+TGG | 0.555849 | 3.2:-62796212 | None:intergenic |
| TAAATAGTAATTGTTTCTTG+AGG | 0.556987 | 3.2:-62797879 | None:intergenic |
| GTGACACAAGCGGTGCCAGA+GGG | 0.558684 | 3.2:-62796848 | None:intergenic |
| AATTCCATATAAAATCTCAC+AGG | 0.565071 | 3.2:+62796280 | MS.gene62191:CDS |
| AAAGATGAATCAAGACCGGA+TGG | 0.570780 | 3.2:+62795878 | None:intergenic |
| GATCATGACAAGATTCCATC+CGG | 0.571059 | 3.2:-62795893 | None:intergenic |
| CATATAAAATCTCACAGGGA+TGG | 0.576471 | 3.2:+62796285 | MS.gene62191:CDS |
| TTTCCTGGATCAGGTTAGCA+AGG | 0.577526 | 3.2:+62797184 | MS.gene62191:CDS |
| AAGCGGTGCCAGAGGGTGCG+CGG | 0.577646 | 3.2:-62796841 | None:intergenic |
| GGTGCAATTGATCAAGGTGA+TGG | 0.580356 | 3.2:-62796872 | None:intergenic |
| AAAGCTTGCTGTAGTTGCTA+CGG | 0.585308 | 3.2:-62796181 | None:intergenic |
| GTTTACGAAAGCTTTAGACT+TGG | 0.588389 | 3.2:+62796359 | MS.gene62191:CDS |
| CATCGAGTATTAAACGTGAA+AGG | 0.595299 | 3.2:-62797125 | None:intergenic |
| TGCTGCAACTTTATGGATGG+AGG | 0.596653 | 3.2:+62797810 | MS.gene62191:CDS |
| TTGGTTTGCCAAATGTTAGG+TGG | 0.598605 | 3.2:+62796378 | MS.gene62191:CDS |
| TACTCCTAATTCGTTTACAC+AGG | 0.598658 | 3.2:-62796660 | None:intergenic |
| TTTGCTGCACTATCCTTGCA+GGG | 0.605237 | 3.2:-62796959 | None:intergenic |
| TGGAATCCAACTGCTTGCAG+AGG | 0.608124 | 3.2:+62796206 | MS.gene62191:CDS |
| GAAACCAAAGAATTTGAAGC+CGG | 0.608342 | 3.2:+62796247 | MS.gene62191:CDS |
| ACATGGCGAAGTTCGAGTGA+TGG | 0.608871 | 3.2:+62797101 | MS.gene62191:CDS |
| TGGTCAATATCTATTTCTTG+GGG | 0.611066 | 3.2:+62797008 | MS.gene62191:CDS |
| ATGGCTGCTGGCATACGTCA+GGG | 0.616574 | 3.2:-62797154 | None:intergenic |
| CATACGACCTTGACCCTGCA+AGG | 0.619078 | 3.2:+62796946 | MS.gene62191:CDS |
| TCGCTGGTTCATCGAAAATG+TGG | 0.619094 | 3.2:+62796153 | MS.gene62191:CDS |
| AGTGACACAAGCGGTGCCAG+AGG | 0.619459 | 3.2:-62796849 | None:intergenic |
| TACATCATTGTTGATAACAG+CGG | 0.636999 | 3.2:+62797049 | MS.gene62191:CDS |
| CTATAAGAGACATGTTGACA+AGG | 0.643214 | 3.2:+62797229 | MS.gene62191:CDS |
| TGGATCAGGTTAGCAAGGCG+AGG | 0.644993 | 3.2:+62797189 | MS.gene62191:CDS |
| TGTAATGGGAGATGATGATA+CGG | 0.647634 | 3.2:+62796403 | MS.gene62191:CDS |
| TCACCTTGATCAATTGCACC+CGG | 0.648699 | 3.2:+62796875 | MS.gene62191:CDS |
| TGGTGGGAATTCTGAGAGTG+TGG | 0.651969 | 3.2:+62796490 | MS.gene62191:CDS |
| AAGTTGCAGCATTGCCTACG+TGG | 0.657008 | 3.2:-62797798 | None:intergenic |
| CATTCGCTAAACCAGACCGA+TGG | 0.664525 | 3.2:+62796036 | MS.gene62191:CDS |
| GCTCCGGTAATGGAAACCAT+CGG | 0.666665 | 3.2:-62796052 | None:intergenic |
| AGGTGATGGAGTGACACAAG+CGG | 0.678083 | 3.2:-62796858 | None:intergenic |
| CATCTGCAGTTCGGATATCG+CGG | 0.678366 | 3.2:+62796333 | MS.gene62191:CDS |
| ATTCCATATAAAATCTCACA+GGG | 0.693816 | 3.2:+62796281 | MS.gene62191:CDS |
| ACACAGTAACTAAATTCTCG+GGG | 0.699271 | 3.2:-62796433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGATACTATTATTATTA+TGG | + | chr3.2:62796617-62796636 | MS.gene62191:CDS | 15.0% |
| !! | TTCTTTATTCTATATTCTAT+GGG | + | chr3.2:62796751-62796770 | MS.gene62191:intron | 15.0% |
| !! | TTTCTTTATTCTATATTCTA+TGG | + | chr3.2:62796750-62796769 | MS.gene62191:intron | 15.0% |
| !!! | GATGTTTTGTTTTTATTTTG+TGG | - | chr3.2:62797652-62797671 | None:intergenic | 20.0% |
| !!! | TAAATAGTAATTGTTTCTTG+AGG | - | chr3.2:62797882-62797901 | None:intergenic | 20.0% |
| ! | AACATCTCACATATTGTATT+CGG | + | chr3.2:62796128-62796147 | MS.gene62191:CDS | 25.0% |
| ! | AAGACAAGAATCCATAATAT+TGG | - | chr3.2:62796597-62796616 | None:intergenic | 25.0% |
| ! | AATCAATTGTATTATGTTGG+TGG | + | chr3.2:62796473-62796492 | MS.gene62191:CDS | 25.0% |
| ! | AATTCCATATAAAATCTCAC+AGG | + | chr3.2:62796280-62796299 | MS.gene62191:CDS | 25.0% |
| ! | ACTTAAACTCAAAATGCTAT+AGG | - | chr3.2:62797732-62797751 | None:intergenic | 25.0% |
| ! | ACTTAATTCAGTTTATCTAC+TGG | - | chr3.2:62797617-62797636 | None:intergenic | 25.0% |
| ! | ATCAATTGTATTATGTTGGT+GGG | + | chr3.2:62796474-62796493 | MS.gene62191:CDS | 25.0% |
| ! | ATTCCATATAAAATCTCACA+GGG | + | chr3.2:62796281-62796300 | MS.gene62191:CDS | 25.0% |
| ! | CACAATCAATTGTATTATGT+TGG | + | chr3.2:62796470-62796489 | MS.gene62191:CDS | 25.0% |
| ! | CCTTATATACCAGAAAAAAT+AGG | + | chr3.2:62795936-62795955 | MS.gene62191:CDS | 25.0% |
| ! | TGTTATGCATTCTTATGATA+TGG | + | chr3.2:62796520-62796539 | MS.gene62191:CDS | 25.0% |
| !! | ATGGGAAATTTACTGTTTTA+TGG | + | chr3.2:62796769-62796788 | MS.gene62191:intron | 25.0% |
| !! | ATGGTCAATATCTATTTCTT+GGG | + | chr3.2:62797007-62797026 | MS.gene62191:CDS | 25.0% |
| !! | TTAATGAAGACATTTGACTT+TGG | - | chr3.2:62796911-62796930 | None:intergenic | 25.0% |
| !!! | CCTATTTTTTCTGGTATATA+AGG | - | chr3.2:62795939-62795958 | None:intergenic | 25.0% |
| !!! | TGATTTGACTGTTTTAAATC+AGG | + | chr3.2:62797773-62797792 | MS.gene62191:intron | 25.0% |
| AACACAGTAACTAAATTCTC+GGG | - | chr3.2:62796437-62796456 | None:intergenic | 30.0% | |
| ACAATATGTGAGATGTTTGT+AGG | - | chr3.2:62796125-62796144 | None:intergenic | 30.0% | |
| AGTACATTCTTCCAATATTC+TGG | - | chr3.2:62797323-62797342 | None:intergenic | 30.0% | |
| ATTACAAACCACCTAACATT+TGG | - | chr3.2:62796389-62796408 | None:intergenic | 30.0% | |
| ATTTAGCTGTTTGTCCAAAA+AGG | - | chr3.2:62797394-62797413 | None:intergenic | 30.0% | |
| CAACACAGTAACTAAATTCT+CGG | - | chr3.2:62796438-62796457 | None:intergenic | 30.0% | |
| GAGAATTTAGTTACTGTGTT+GGG | + | chr3.2:62796437-62796456 | MS.gene62191:CDS | 30.0% | |
| GATAAGATATGAAGAGTTTC+TGG | + | chr3.2:62797509-62797528 | MS.gene62191:intron | 30.0% | |
| GTTTCATTCTCAATAAGAGT+TGG | + | chr3.2:62795966-62795985 | MS.gene62191:CDS | 30.0% | |
| TGATCCAGGAAAAATATAGA+TGG | - | chr3.2:62797176-62797195 | None:intergenic | 30.0% | |
| TGTATAACATGTAAATGCTC+CGG | - | chr3.2:62796071-62796090 | None:intergenic | 30.0% | |
| ! | AAATGTTAGGTGGTTTGTAA+TGG | + | chr3.2:62796388-62796407 | MS.gene62191:CDS | 30.0% |
| ! | AATGTTAGGTGGTTTGTAAT+GGG | + | chr3.2:62796389-62796408 | MS.gene62191:CDS | 30.0% |
| ! | ATCTATATTTTTCCTGGATC+AGG | + | chr3.2:62797175-62797194 | MS.gene62191:CDS | 30.0% |
| ! | CATTCTTATGATATGGCTTT+TGG | + | chr3.2:62796527-62796546 | MS.gene62191:CDS | 30.0% |
| ! | GATGGTCAATATCTATTTCT+TGG | + | chr3.2:62797006-62797025 | MS.gene62191:CDS | 30.0% |
| ! | GTTTGTAGGTATTGTATCAA+TGG | - | chr3.2:62796111-62796130 | None:intergenic | 30.0% |
| ! | TGGTCAATATCTATTTCTTG+GGG | + | chr3.2:62797008-62797027 | MS.gene62191:CDS | 30.0% |
| !! | GTATGTTTTGTTATACCTGA+TGG | - | chr3.2:62796709-62796728 | None:intergenic | 30.0% |
| !! | TACATCATTGTTGATAACAG+CGG | + | chr3.2:62797049-62797068 | MS.gene62191:CDS | 30.0% |
| ACACAGTAACTAAATTCTCG+GGG | - | chr3.2:62796436-62796455 | None:intergenic | 35.0% | |
| ACCAGAAAAAATAGGTGACT+TGG | + | chr3.2:62795944-62795963 | MS.gene62191:CDS | 35.0% | |
| CAAGTGATATCGATGCTATA+AGG | - | chr3.2:62796004-62796023 | None:intergenic | 35.0% | |
| CATATAAAATCTCACAGGGA+TGG | + | chr3.2:62796285-62796304 | MS.gene62191:CDS | 35.0% | |
| CATCGAGTATTAAACGTGAA+AGG | - | chr3.2:62797128-62797147 | None:intergenic | 35.0% | |
| CGAGAATTTAGTTACTGTGT+TGG | + | chr3.2:62796436-62796455 | MS.gene62191:CDS | 35.0% | |
| CTATAAGAGACATGTTGACA+AGG | + | chr3.2:62797229-62797248 | MS.gene62191:CDS | 35.0% | |
| CTTGTCAACATGTCTCTTAT+AGG | - | chr3.2:62797231-62797250 | None:intergenic | 35.0% | |
| CTTTCACGTTTAATACTCGA+TGG | + | chr3.2:62797126-62797145 | MS.gene62191:CDS | 35.0% | |
| GAAGTGTGCATATCAGAATA+AGG | + | chr3.2:62797847-62797866 | MS.gene62191:CDS | 35.0% | |
| TACTCCTAATTCGTTTACAC+AGG | - | chr3.2:62796663-62796682 | None:intergenic | 35.0% | |
| TATGGAATTAGCATATCGTC+CGG | - | chr3.2:62796269-62796288 | None:intergenic | 35.0% | |
| TCTTTCAGCTTGACATTAGA+GGG | + | chr3.2:62796799-62796818 | MS.gene62191:intron | 35.0% | |
| TTCTTTCAGCTTGACATTAG+AGG | + | chr3.2:62796798-62796817 | MS.gene62191:intron | 35.0% | |
| ! | AAAGCGTTTGTTACGATCAT+AGG | + | chr3.2:62796979-62796998 | MS.gene62191:CDS | 35.0% |
| ! | AGCTAGACTAGCCAATATTA+TGG | + | chr3.2:62796583-62796602 | MS.gene62191:CDS | 35.0% |
| ! | CATCCCTGTGAGATTTTATA+TGG | - | chr3.2:62796287-62796306 | None:intergenic | 35.0% |
| ! | CATTGCAGACGTTTAAAACA+TGG | + | chr3.2:62797084-62797103 | MS.gene62191:CDS | 35.0% |
| ! | GAAACCAAAGAATTTGAAGC+CGG | + | chr3.2:62796247-62796266 | MS.gene62191:CDS | 35.0% |
| ! | TCTTATGATATGGCTTTTGG+TGG | + | chr3.2:62796530-62796549 | MS.gene62191:CDS | 35.0% |
| ! | TGTAATGGGAGATGATGATA+CGG | + | chr3.2:62796403-62796422 | MS.gene62191:CDS | 35.0% |
| ! | TTTTAAATCAGGTACCACGT+AGG | + | chr3.2:62797784-62797803 | MS.gene62191:intron | 35.0% |
| !! | ATGGTTCTGATCAAAGAGTT+TGG | + | chr3.2:62796636-62796655 | MS.gene62191:CDS | 35.0% |
| !! | CATGTTTTAAACGTCTGCAA+TGG | - | chr3.2:62797086-62797105 | None:intergenic | 35.0% |
| !! | GTTTACGAAAGCTTTAGACT+TGG | + | chr3.2:62796359-62796378 | MS.gene62191:CDS | 35.0% |
| !! | TGGTTCTGATCAAAGAGTTT+GGG | + | chr3.2:62796637-62796656 | MS.gene62191:CDS | 35.0% |
| !!! | ACCAAGTCACCTATTTTTTC+TGG | - | chr3.2:62795948-62795967 | None:intergenic | 35.0% |
| AAGAGACATGTTGACAAGGA+AGG | + | chr3.2:62797233-62797252 | MS.gene62191:CDS | 40.0% | |
| ACATGTAAATGCTCCGGTAA+TGG | - | chr3.2:62796065-62796084 | None:intergenic | 40.0% | |
| ATATTCTGGATCCAGCTTCA+AGG | - | chr3.2:62797309-62797328 | None:intergenic | 40.0% | |
| ATGGTTGAAAGTGAGAGAGA+GGG | - | chr3.2:62797355-62797374 | None:intergenic | 40.0% | |
| CAATGCTGCAACTTTATGGA+TGG | + | chr3.2:62797807-62797826 | MS.gene62191:CDS | 40.0% | |
| CTGGTTTAGCGAATGTTGAA+TGG | - | chr3.2:62796031-62796050 | None:intergenic | 40.0% | |
| GACATTAGAGGGAATCCATA+TGG | + | chr3.2:62796810-62796829 | MS.gene62191:CDS | 40.0% | |
| GATCATGACAAGATTCCATC+CGG | - | chr3.2:62795896-62795915 | None:intergenic | 40.0% | |
| GGAAAAATATAGATGGCTGC+TGG | - | chr3.2:62797169-62797188 | None:intergenic | 40.0% | |
| GTATCTCTTACCAGAGAAAG+AGG | + | chr3.2:62796680-62796699 | MS.gene62191:CDS | 40.0% | |
| TAAAGTTTCTGCCTTGAAGC+TGG | + | chr3.2:62797295-62797314 | MS.gene62191:CDS | 40.0% | |
| TAGGCAATGCTGCAACTTTA+TGG | + | chr3.2:62797803-62797822 | MS.gene62191:CDS | 40.0% | |
| TATGGTTGAAAGTGAGAGAG+AGG | - | chr3.2:62797356-62797375 | None:intergenic | 40.0% | |
| TGAAGCTGGATCCAGAATAT+TGG | + | chr3.2:62797309-62797328 | MS.gene62191:CDS | 40.0% | |
| ! | ACACACACGAAGTTCCTTTT+TGG | + | chr3.2:62797377-62797396 | MS.gene62191:intron | 40.0% |
| ! | GAAGACATTTGACTTTGGTC+CGG | - | chr3.2:62796906-62796925 | None:intergenic | 40.0% |
| ! | GCAGCCATCTATATTTTTCC+TGG | + | chr3.2:62797169-62797188 | MS.gene62191:CDS | 40.0% |
| ! | TATGATATGGCTTTTGGTGG+TGG | + | chr3.2:62796533-62796552 | MS.gene62191:CDS | 40.0% |
| ! | TATGGATGGAGGAAGCATAA+AGG | + | chr3.2:62797821-62797840 | MS.gene62191:CDS | 40.0% |
| !! | AAAGCTTGCTGTAGTTGCTA+CGG | - | chr3.2:62796184-62796203 | None:intergenic | 40.0% |
| !! | GACTTGGTTTGCCAAATGTT+AGG | + | chr3.2:62796375-62796394 | MS.gene62191:CDS | 40.0% |
| !! | TTGGTTTGCCAAATGTTAGG+TGG | + | chr3.2:62796378-62796397 | MS.gene62191:CDS | 40.0% |
| ACAAAACCTCTGCAAGCAGT+TGG | - | chr3.2:62796215-62796234 | None:intergenic | 45.0% | |
| AGACCGATGGTTTCCATTAC+CGG | + | chr3.2:62796049-62796068 | MS.gene62191:CDS | 45.0% | |
| AGGAACTTCGTGTGTGTGTA+TGG | - | chr3.2:62797374-62797393 | None:intergenic | 45.0% | |
| CAGAGAAAGAGGATTCCATC+AGG | + | chr3.2:62796691-62796710 | MS.gene62191:CDS | 45.0% | |
| CATATTGTATTCGGCATCGC+TGG | + | chr3.2:62796137-62796156 | MS.gene62191:CDS | 45.0% | |
| CTGATGGAATCCTCTTTCTC+TGG | - | chr3.2:62796693-62796712 | None:intergenic | 45.0% | |
| GGTGCAATTGATCAAGGTGA+TGG | - | chr3.2:62796875-62796894 | None:intergenic | 45.0% | |
| GTAGCAACTACAGCAAGCTT+TGG | + | chr3.2:62796183-62796202 | MS.gene62191:CDS | 45.0% | |
| GTTACGATCATAGGCGAAGA+TGG | + | chr3.2:62796988-62797007 | MS.gene62191:CDS | 45.0% | |
| TCACCTTGATCAATTGCACC+CGG | + | chr3.2:62796875-62796894 | MS.gene62191:CDS | 45.0% | |
| TCGTCCGGCTTCAAATTCTT+TGG | - | chr3.2:62796254-62796273 | None:intergenic | 45.0% | |
| TGCTGCAACTTTATGGATGG+AGG | + | chr3.2:62797810-62797829 | MS.gene62191:CDS | 45.0% | |
| TGGGCCTGTGTAAACGAATT+AGG | + | chr3.2:62796656-62796675 | MS.gene62191:CDS | 45.0% | |
| TTTCCTGGATCAGGTTAGCA+AGG | + | chr3.2:62797184-62797203 | MS.gene62191:CDS | 45.0% | |
| TTTGCTGCACTATCCTTGCA+GGG | - | chr3.2:62796962-62796981 | None:intergenic | 45.0% | |
| ! | AAGAAGTGCAAGAGAGCAGA+TGG | + | chr3.2:62797257-62797276 | MS.gene62191:CDS | 45.0% |
| ! | GATGGAGGAAGCATAAAGGA+TGG | + | chr3.2:62797825-62797844 | MS.gene62191:CDS | 45.0% |
| !! | TCGCTGGTTCATCGAAAATG+TGG | + | chr3.2:62796153-62796172 | MS.gene62191:CDS | 45.0% |
| AAAGTGAGAGAGAGGGAGAG+AGG | - | chr3.2:62797348-62797367 | None:intergenic | 50.0% | |
| AAGTGAGAGAGAGGGAGAGA+GGG | - | chr3.2:62797347-62797366 | None:intergenic | 50.0% | |
| AAGTTGCAGCATTGCCTACG+TGG | - | chr3.2:62797801-62797820 | None:intergenic | 50.0% | |
| ACACCGGGTGCAATTGATCA+AGG | - | chr3.2:62796881-62796900 | None:intergenic | 50.0% | |
| ACATGGCGAAGTTCGAGTGA+TGG | + | chr3.2:62797101-62797120 | MS.gene62191:CDS | 50.0% | |
| CATCTGCAGTTCGGATATCG+CGG | + | chr3.2:62796333-62796352 | MS.gene62191:CDS | 50.0% | |
| CATTCGCTAAACCAGACCGA+TGG | + | chr3.2:62796036-62796055 | MS.gene62191:CDS | 50.0% | |
| CTTTGCTGCACTATCCTTGC+AGG | - | chr3.2:62796963-62796982 | None:intergenic | 50.0% | |
| TCAATTGCACCCGGTGTTTC+CGG | + | chr3.2:62796884-62796903 | MS.gene62191:CDS | 50.0% | |
| TGACTTTGGTCCGGAAACAC+CGG | - | chr3.2:62796897-62796916 | None:intergenic | 50.0% | |
| TGCACTCTGCATCTGCAGTT+CGG | + | chr3.2:62796324-62796343 | MS.gene62191:CDS | 50.0% | |
| TGCGCGGCTAAAAGACCATA+TGG | - | chr3.2:62796828-62796847 | None:intergenic | 50.0% | |
| TGGAATCCAACTGCTTGCAG+AGG | + | chr3.2:62796206-62796225 | MS.gene62191:CDS | 50.0% | |
| ! | GCAACTACAGCAAGCTTTGG+TGG | + | chr3.2:62796186-62796205 | MS.gene62191:CDS | 50.0% |
| ! | TGGTGGGAATTCTGAGAGTG+TGG | + | chr3.2:62796490-62796509 | MS.gene62191:CDS | 50.0% |
| !! | AGGTGATGGAGTGACACAAG+CGG | - | chr3.2:62796861-62796880 | None:intergenic | 50.0% |
| !! | CACAGGGATGGACTAAGTTC+AGG | + | chr3.2:62796297-62796316 | MS.gene62191:CDS | 50.0% |
| !! | CTGCTTGCAGAGGTTTTGTC+TGG | + | chr3.2:62796216-62796235 | MS.gene62191:CDS | 50.0% |
| !! | GCTCCGGTAATGGAAACCAT+CGG | - | chr3.2:62796055-62796074 | None:intergenic | 50.0% |
| !! | GGTAATGGAAACCATCGGTC+TGG | - | chr3.2:62796050-62796069 | None:intergenic | 50.0% |
| !!! | GATATGGCTTTTGGTGGTGG+TGG | + | chr3.2:62796536-62796555 | MS.gene62191:CDS | 50.0% |
| ATGGCTGCTGGCATACGTCA+GGG | - | chr3.2:62797157-62797176 | None:intergenic | 55.0% | |
| CATACGACCTTGACCCTGCA+AGG | + | chr3.2:62796946-62796965 | MS.gene62191:CDS | 55.0% | |
| GACTTTGGTCCGGAAACACC+GGG | - | chr3.2:62796896-62796915 | None:intergenic | 55.0% | |
| GCACTATCCTTGCAGGGTCA+AGG | - | chr3.2:62796956-62796975 | None:intergenic | 55.0% | |
| TCGCCTTGCTAACCTGATCC+AGG | - | chr3.2:62797190-62797209 | None:intergenic | 55.0% | |
| TGGATCAGGTTAGCAAGGCG+AGG | + | chr3.2:62797189-62797208 | MS.gene62191:CDS | 55.0% | |
| CAGGTTAGCAAGGCGAGGAC+TGG | + | chr3.2:62797194-62797213 | MS.gene62191:CDS | 60.0% | |
| GATGGCTGCTGGCATACGTC+AGG | - | chr3.2:62797158-62797177 | None:intergenic | 60.0% | |
| ! | AGTGACACAAGCGGTGCCAG+AGG | - | chr3.2:62796852-62796871 | None:intergenic | 60.0% |
| ! | GTGACACAAGCGGTGCCAGA+GGG | - | chr3.2:62796851-62796870 | None:intergenic | 60.0% |
| ! | TCTTTTAGCCGCGCACCCTC+TGG | + | chr3.2:62796833-62796852 | MS.gene62191:CDS | 60.0% |
| ! | AAGCGGTGCCAGAGGGTGCG+CGG | - | chr3.2:62796844-62796863 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 62795882 | 62797902 | 62795882 | ID=MS.gene62191 |
| chr3.2 | mRNA | 62795882 | 62797902 | 62795882 | ID=MS.gene62191.t1;Parent=MS.gene62191 |
| chr3.2 | exon | 62795882 | 62796712 | 62795882 | ID=MS.gene62191.t1.exon1;Parent=MS.gene62191.t1 |
| chr3.2 | CDS | 62795882 | 62796712 | 62795882 | ID=cds.MS.gene62191.t1;Parent=MS.gene62191.t1 |
| chr3.2 | exon | 62796807 | 62797337 | 62796807 | ID=MS.gene62191.t1.exon2;Parent=MS.gene62191.t1 |
| chr3.2 | CDS | 62796807 | 62797337 | 62796807 | ID=cds.MS.gene62191.t1;Parent=MS.gene62191.t1 |
| chr3.2 | exon | 62797795 | 62797902 | 62797795 | ID=MS.gene62191.t1.exon3;Parent=MS.gene62191.t1 |
| chr3.2 | CDS | 62797795 | 62797902 | 62797795 | ID=cds.MS.gene62191.t1;Parent=MS.gene62191.t1 |
| Gene Sequence |
| Protein sequence |
