Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62301.t1 | XP_003596267.1 | 80.4 | 445 | 83 | 3 | 1 | 442 | 1 | 444 | 3.80E-206 | 727.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62301.t1 | Q2TA14 | 35.1 | 407 | 223 | 13 | 29 | 401 | 29 | 428 | 3.4e-62 | 240.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62301.t1 | G7IQZ7 | 80.4 | 445 | 83 | 3 | 1 | 442 | 1 | 444 | 2.7e-206 | 727.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene62301 | MS.gene45615 | PPI |
MS.gene62301 | MS.gene011684 | PPI |
MS.gene60169 | MS.gene62301 | PPI |
MS.gene62301 | MS.gene44433 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62301.t1 | MTR_2g075300 | 76.101 | 477 | 95 | 4 | 1 | 474 | 1 | 461 | 0.0 | 731 |
MS.gene62301.t1 | MTR_2g075300 | 80.645 | 93 | 13 | 3 | 401 | 491 | 92 | 181 | 3.66e-35 | 137 |
MS.gene62301.t1 | MTR_2g084535 | 53.986 | 439 | 182 | 7 | 10 | 431 | 13 | 448 | 1.58e-162 | 470 |
MS.gene62301.t1 | MTR_2g084535 | 57.426 | 101 | 33 | 3 | 401 | 491 | 94 | 194 | 1.34e-23 | 104 |
MS.gene62301.t1 | MTR_7g105400 | 38.732 | 426 | 223 | 9 | 5 | 399 | 3 | 421 | 1.33e-95 | 298 |
MS.gene62301.t1 | MTR_7g105400 | 49.505 | 101 | 40 | 3 | 402 | 491 | 92 | 192 | 3.35e-17 | 84.7 |
MS.gene62301.t1 | MTR_7g105390 | 40.098 | 409 | 214 | 9 | 54 | 432 | 48 | 455 | 1.52e-94 | 295 |
MS.gene62301.t1 | MTR_7g105390 | 48.696 | 115 | 43 | 5 | 388 | 491 | 78 | 187 | 8.50e-18 | 86.3 |
MS.gene62301.t1 | MTR_7g105390 | 37.310 | 394 | 194 | 6 | 54 | 432 | 66 | 421 | 4.54e-78 | 252 |
MS.gene62301.t1 | MTR_7g105390 | 48.696 | 115 | 43 | 5 | 388 | 491 | 96 | 205 | 6.83e-18 | 86.7 |
MS.gene62301.t1 | MTR_4g097590 | 37.405 | 393 | 195 | 9 | 48 | 393 | 50 | 438 | 6.90e-78 | 253 |
MS.gene62301.t1 | MTR_4g097590 | 43.269 | 104 | 49 | 4 | 398 | 491 | 87 | 190 | 9.52e-13 | 70.9 |
MS.gene62301.t1 | MTR_8g076210 | 30.628 | 382 | 204 | 19 | 57 | 405 | 17 | 370 | 1.74e-26 | 112 |
MS.gene62301.t1 | MTR_5g021530 | 27.934 | 426 | 240 | 18 | 9 | 405 | 6 | 393 | 3.36e-20 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62301.t1 | AT5G22860 | 49.593 | 369 | 162 | 7 | 52 | 399 | 53 | 418 | 2.81e-117 | 353 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 1.08e-13 | 73.6 |
MS.gene62301.t1 | AT5G22860 | 49.593 | 369 | 162 | 7 | 52 | 399 | 53 | 418 | 3.30e-117 | 352 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 1.21e-13 | 73.2 |
MS.gene62301.t1 | AT5G22860 | 49.593 | 369 | 162 | 7 | 52 | 399 | 53 | 418 | 3.30e-117 | 352 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 1.21e-13 | 73.2 |
MS.gene62301.t1 | AT5G22860 | 50.275 | 364 | 157 | 7 | 52 | 394 | 53 | 413 | 7.52e-117 | 353 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 2.16e-13 | 72.8 |
MS.gene62301.t1 | AT5G22860 | 50.275 | 364 | 157 | 7 | 52 | 394 | 53 | 413 | 7.52e-117 | 353 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 2.16e-13 | 72.8 |
MS.gene62301.t1 | AT5G22860 | 50.275 | 364 | 157 | 7 | 52 | 394 | 53 | 413 | 7.52e-117 | 353 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 2.16e-13 | 72.8 |
MS.gene62301.t1 | AT5G22860 | 49.593 | 369 | 162 | 7 | 52 | 399 | 53 | 418 | 1.28e-116 | 352 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 9.17e-14 | 73.9 |
MS.gene62301.t1 | AT2G24280 | 39.690 | 451 | 238 | 9 | 10 | 433 | 5 | 448 | 2.46e-106 | 326 |
MS.gene62301.t1 | AT2G24280 | 47.959 | 98 | 43 | 3 | 402 | 491 | 83 | 180 | 6.08e-16 | 80.9 |
MS.gene62301.t1 | AT2G24280 | 40.964 | 415 | 214 | 7 | 10 | 399 | 5 | 413 | 7.28e-106 | 323 |
MS.gene62301.t1 | AT2G24280 | 47.959 | 98 | 43 | 3 | 402 | 491 | 83 | 180 | 5.84e-16 | 80.5 |
MS.gene62301.t1 | AT5G22860 | 49.521 | 313 | 135 | 6 | 52 | 344 | 53 | 362 | 5.94e-96 | 295 |
MS.gene62301.t1 | AT5G22860 | 42.969 | 128 | 58 | 4 | 374 | 491 | 71 | 193 | 6.84e-14 | 73.6 |
MS.gene62301.t1 | AT5G65760 | 37.705 | 427 | 232 | 8 | 4 | 401 | 8 | 429 | 1.13e-87 | 278 |
MS.gene62301.t1 | AT5G65760 | 44.000 | 100 | 46 | 4 | 402 | 491 | 96 | 195 | 2.57e-13 | 72.4 |
MS.gene62301.t1 | AT3G28680 | 44.509 | 173 | 91 | 3 | 176 | 343 | 18 | 190 | 5.89e-43 | 151 |
MS.gene62301.t1 | AT4G36195 | 29.748 | 437 | 238 | 21 | 1 | 401 | 1 | 404 | 3.49e-24 | 105 |
MS.gene62301.t1 | AT4G36195 | 29.748 | 437 | 238 | 21 | 1 | 401 | 1 | 404 | 5.07e-24 | 105 |
MS.gene62301.t1 | AT4G36195 | 29.748 | 437 | 238 | 21 | 1 | 401 | 1 | 404 | 5.07e-24 | 105 |
MS.gene62301.t1 | AT4G36190 | 35.945 | 217 | 109 | 9 | 1 | 202 | 1 | 202 | 2.88e-22 | 100 |
MS.gene62301.t1 | AT2G18080 | 26.573 | 429 | 251 | 17 | 7 | 401 | 7 | 405 | 2.77e-21 | 97.1 |
Find 129 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCCCCAATATTTGCTTATT+TGG | 0.090901 | 2.3:-21540059 | MS.gene62301:CDS |
TGCCCCAATATTTGCTTATT+TGG | 0.090901 | 2.3:-21542747 | MS.gene62301:CDS |
TACAAAATATCTCTGTTTAA+AGG | 0.141045 | 2.3:+21542802 | None:intergenic |
CGCATACAACATAAGCTCTT+TGG | 0.252444 | 2.3:-21539830 | MS.gene62301:CDS |
CCACCCAAATAAGCAAATAT+TGG | 0.260148 | 2.3:+21540055 | None:intergenic |
CCACCCAAATAAGCAAATAT+TGG | 0.260148 | 2.3:+21542743 | None:intergenic |
GAACAATGTGAGAAATATTT+TGG | 0.267504 | 2.3:-21540859 | MS.gene62301:CDS |
GCCCCAATATTTGCTTATTT+GGG | 0.276564 | 2.3:-21540058 | MS.gene62301:CDS |
GCCCCAATATTTGCTTATTT+GGG | 0.276564 | 2.3:-21542746 | MS.gene62301:CDS |
ATAGCCGTAAGATGTGTTAA+AGG | 0.307501 | 2.3:+21542525 | None:intergenic |
CACCCAAATAAGCAAATATT+GGG | 0.314162 | 2.3:+21540056 | None:intergenic |
CACCCAAATAAGCAAATATT+GGG | 0.314162 | 2.3:+21542744 | None:intergenic |
TTTGCACCAGTATATTTATC+TGG | 0.315590 | 2.3:+21541124 | None:intergenic |
ACGAATCTATACGAAATTCT+TGG | 0.315860 | 2.3:-21541505 | MS.gene62301:CDS |
GCCTCACAAATAGTCGTAAC+TGG | 0.318781 | 2.3:+21541238 | None:intergenic |
AGCATTTCTGCTACATTTGA+AGG | 0.343269 | 2.3:-21539770 | MS.gene62301:CDS |
TGTTATTACAAGGGATTTCC+AGG | 0.355365 | 2.3:-21541652 | MS.gene62301:intron |
TACTTACTTCTATAATGTTT+AGG | 0.359225 | 2.3:-21540789 | MS.gene62301:intron |
CTTAGAAAGTCAAGACCATT+TGG | 0.359818 | 2.3:+21541455 | None:intergenic |
CAGTGCTTGCTGCATGGTTT+CGG | 0.367937 | 2.3:-21541767 | MS.gene62301:CDS |
CAGGTCTTCATTTAAATTGA+AGG | 0.368850 | 2.3:+21542886 | None:intergenic |
AGAAAGTGACATTGTTAATT+CGG | 0.382135 | 2.3:-21542720 | MS.gene62301:CDS |
AGAAGTTCTGCTATATTTGA+AGG | 0.387890 | 2.3:-21542470 | MS.gene62301:CDS |
TAGTAGAGCTTTAAAAGAAT+TGG | 0.389889 | 2.3:+21542676 | None:intergenic |
AACTCAACCGTGGAAGTGTC+AGG | 0.394233 | 2.3:+21542951 | None:intergenic |
GTGTCCAACCTCGCCCTCAC+TGG | 0.397994 | 2.3:-21540837 | MS.gene62301:CDS |
TGCCACCTCTTGCAGTCCCT+TGG | 0.399043 | 2.3:-21541329 | MS.gene62301:intron |
ACTATTTGTGAGGCCATTGA+TGG | 0.401121 | 2.3:-21541229 | MS.gene62301:CDS |
GTTAATCCAGATAAATATAC+TGG | 0.411412 | 2.3:-21541130 | MS.gene62301:CDS |
GCATACAACATAAGCTCTTT+GGG | 0.413513 | 2.3:-21539829 | MS.gene62301:CDS |
AGATTCGTAGCATGTCTTAC+TGG | 0.414112 | 2.3:+21541520 | None:intergenic |
ATATATGCAGGTGTGTTTGC+TGG | 0.429605 | 2.3:-21541175 | MS.gene62301:CDS |
GATGACATTGTTAATTCGCT+TGG | 0.432645 | 2.3:-21540028 | MS.gene62301:CDS |
GCAGTGGAGCTGATGAAGCC+AGG | 0.436348 | 2.3:+21541715 | None:intergenic |
TCTTGTTAGCACTAGTACTA+CGG | 0.436603 | 2.3:-21539871 | MS.gene62301:intron |
ACATCATGGTAAGCACTTGC+TGG | 0.449811 | 2.3:+21541672 | None:intergenic |
GTCCCCGGTGATTGTGGTTG+GGG | 0.453330 | 2.3:-21539728 | MS.gene62301:CDS |
GTCCCCGGTGATTGTGGTTG+GGG | 0.453330 | 2.3:-21542428 | MS.gene62301:CDS |
AGTCCCCGGTGATTGTGGTT+GGG | 0.454230 | 2.3:-21539729 | MS.gene62301:CDS |
AGTCCCCGGTGATTGTGGTT+GGG | 0.454230 | 2.3:-21542429 | MS.gene62301:CDS |
TCTTGTTAGCACCGGTGCTA+CGG | 0.460637 | 2.3:-21542559 | MS.gene62301:intron |
CCACGTAGCCATCGGCTCCC+TGG | 0.466379 | 2.3:-21541733 | MS.gene62301:CDS |
AGTGACATTGTTAATTCGGT+TGG | 0.468415 | 2.3:-21542716 | MS.gene62301:CDS |
GGTTGAGGTTGAAGCAAGGA+AGG | 0.476346 | 2.3:+21540904 | None:intergenic |
TTATGAGTTAAAAGACTACT+TGG | 0.476732 | 2.3:-21541299 | MS.gene62301:CDS |
GCTTATGTTGTATGCGTCAA+AGG | 0.476753 | 2.3:+21539837 | None:intergenic |
TAGCCGTAAGATGTGTTAAA+GGG | 0.480646 | 2.3:+21542526 | None:intergenic |
CACTGGATCACCTCTTACTA+CGG | 0.483625 | 2.3:-21540820 | MS.gene62301:CDS |
CTTGTTAGCACCGGTGCTAC+GGG | 0.484392 | 2.3:-21542558 | MS.gene62301:intron |
TGCCATCTCCAACCATCAAA+TGG | 0.484916 | 2.3:+21541100 | None:intergenic |
ACTGGTGCAAAGCCATTTGA+TGG | 0.485870 | 2.3:-21541112 | MS.gene62301:CDS |
ATAGTTATGCCTACTGGCAT+AGG | 0.493030 | 2.3:-21540931 | MS.gene62301:CDS |
CTTACCATGATGTTATTACA+AGG | 0.494198 | 2.3:-21541662 | MS.gene62301:CDS |
GCCATTGATGGAGCTGCCTA+TGG | 0.499141 | 2.3:-21541217 | MS.gene62301:CDS |
TGATCCAGTGAGGGCGAGGT+TGG | 0.500209 | 2.3:+21540833 | None:intergenic |
CCAATATTTGCTTATTTGGG+TGG | 0.501088 | 2.3:-21540055 | MS.gene62301:CDS |
CCAATATTTGCTTATTTGGG+TGG | 0.501088 | 2.3:-21542743 | MS.gene62301:CDS |
GCAGGTGTGTTTGCTGGCTA+TGG | 0.501955 | 2.3:-21541169 | MS.gene62301:CDS |
CTTGGGAAACATGTATCAAA+AGG | 0.505643 | 2.3:-21541281 | MS.gene62301:CDS |
TACTTGACCTCCGTAGTAAG+AGG | 0.507164 | 2.3:+21540810 | None:intergenic |
CTTGTTAGCACTAGTACTAC+GGG | 0.508654 | 2.3:-21539870 | MS.gene62301:intron |
GTTCATAGAAATATGTCTGC+AGG | 0.509425 | 2.3:+21542867 | None:intergenic |
AAGTGTCAGGGAGTTGGTGG+TGG | 0.516165 | 2.3:+21542964 | None:intergenic |
GAAGTAGCATCTAAGCCAAA+TGG | 0.516219 | 2.3:-21541470 | MS.gene62301:CDS |
AACTCATAAGGCTGTTCCAA+GGG | 0.522112 | 2.3:+21541313 | None:intergenic |
AAGTCCCCGGTGATTGTGGT+TGG | 0.524318 | 2.3:-21539730 | MS.gene62301:CDS |
AAGTCCCCGGTGATTGTGGT+TGG | 0.524318 | 2.3:-21542430 | MS.gene62301:CDS |
GTGCCCTTTAACACATCTTA+CGG | 0.525900 | 2.3:-21542529 | MS.gene62301:CDS |
TCCATAGGCAGCTCCATCAA+TGG | 0.525942 | 2.3:+21541216 | None:intergenic |
CAGTGGAGCTGATGAAGCCA+GGG | 0.533393 | 2.3:+21541716 | None:intergenic |
ATTTGATGGTTGGAGATGGC+AGG | 0.535537 | 2.3:-21541098 | MS.gene62301:intron |
CCTCACAAATAGTCGTAACT+GGG | 0.540340 | 2.3:+21541239 | None:intergenic |
ACAAAAGTCCCCGGTGATTG+TGG | 0.540994 | 2.3:-21539734 | MS.gene62301:CDS |
ACAAAAGTCCCCGGTGATTG+TGG | 0.540994 | 2.3:-21542434 | MS.gene62301:CDS |
TGGAAGTGTCAGGGAGTTGG+TGG | 0.541921 | 2.3:+21542961 | None:intergenic |
CTCGTGAAGTTGAAAGGTTG+AGG | 0.542878 | 2.3:+21540889 | None:intergenic |
GCATAGCTCGTGAAGTTGAA+AGG | 0.545209 | 2.3:+21540883 | None:intergenic |
CTTATGTTGTATGCGTCAAA+GGG | 0.546489 | 2.3:+21539838 | None:intergenic |
AATCCCTTGTAATAACATCA+TGG | 0.547144 | 2.3:+21541658 | None:intergenic |
CAGGGAGCCGATGGCTACGT+GGG | 0.548294 | 2.3:+21541734 | None:intergenic |
TAGTAGAGCTTTAAAAGAAG+TGG | 0.553368 | 2.3:+21539988 | None:intergenic |
GAAATGCTGCATAATTAGCA+AGG | 0.559815 | 2.3:+21539785 | None:intergenic |
GCACTGACTTCCCGTAGCAC+CGG | 0.560278 | 2.3:+21542548 | None:intergenic |
GTGCAAAGCCATTTGATGGT+TGG | 0.560744 | 2.3:-21541108 | MS.gene62301:CDS |
GAAAGGTTGAGGTTGAAGCA+AGG | 0.564290 | 2.3:+21540900 | None:intergenic |
TTTCTGATAGATAGTTGAAG+TGG | 0.566407 | 2.3:+21542834 | None:intergenic |
TATGAGTTAAAAGACTACTT+GGG | 0.566563 | 2.3:-21541298 | MS.gene62301:CDS |
TCCCCGGTGATTGTGGTTGG+GGG | 0.566819 | 2.3:-21539727 | MS.gene62301:CDS |
TCCCCGGTGATTGTGGTTGG+GGG | 0.566819 | 2.3:-21542427 | MS.gene62301:CDS |
ACTGAAATAGTTATGCCTAC+TGG | 0.568132 | 2.3:-21540937 | MS.gene62301:CDS |
ATCTTACGGCTATTTAAACT+CGG | 0.571829 | 2.3:-21542515 | MS.gene62301:CDS |
GAGGTGATCCAGTGAGGGCG+AGG | 0.575976 | 2.3:+21540829 | None:intergenic |
ATCCTCGGTAGGATATATGC+AGG | 0.578750 | 2.3:-21541187 | MS.gene62301:CDS |
AGCCATTTGATGGTTGGAGA+TGG | 0.581728 | 2.3:-21541102 | MS.gene62301:CDS |
TGATGAAGCCAGGGAGCCGA+TGG | 0.581757 | 2.3:+21541725 | None:intergenic |
CCGTGGAAGTGTCAGGGAGT+TGG | 0.584077 | 2.3:+21542958 | None:intergenic |
ATTATGCAGTGCTTGCTGCA+TGG | 0.586924 | 2.3:-21541773 | MS.gene62301:intron |
GAACTTCTGCGTAATCAGCA+AGG | 0.588716 | 2.3:+21542485 | None:intergenic |
TAACTCATAAGGCTGTTCCA+AGG | 0.598303 | 2.3:+21541312 | None:intergenic |
AACTTCTGCGTAATCAGCAA+GGG | 0.607600 | 2.3:+21542486 | None:intergenic |
GCCTATGGAGATGATATCCT+CGG | 0.609049 | 2.3:-21541202 | MS.gene62301:CDS |
CCCAGTTACGACTATTTGTG+AGG | 0.613777 | 2.3:-21541239 | MS.gene62301:CDS |
CCAGGGAGCCGATGGCTACG+TGG | 0.616134 | 2.3:+21541733 | None:intergenic |
AAGTATCCCCACGTAGCCAT+CGG | 0.616259 | 2.3:-21541741 | MS.gene62301:CDS |
CCAACTCCCTGACACTTCCA+CGG | 0.616998 | 2.3:-21542958 | MS.gene62301:CDS |
TTACCATGATGTTATTACAA+GGG | 0.628091 | 2.3:-21541661 | MS.gene62301:CDS |
ACCGAGGATATCATCTCCAT+AGG | 0.628164 | 2.3:+21541201 | None:intergenic |
ATGTTATCAAAGTAGAGCAG+TGG | 0.628222 | 2.3:+21541699 | None:intergenic |
ACTCAACCGTGGAAGTGTCA+GGG | 0.633050 | 2.3:+21542952 | None:intergenic |
GAAGGATTTCCTATGCCAGT+AGG | 0.633835 | 2.3:+21540922 | None:intergenic |
AAATGCTGCATAATTAGCAA+GGG | 0.644220 | 2.3:+21539786 | None:intergenic |
ACTACACGCACAAAAGTCCC+CGG | 0.648942 | 2.3:-21539743 | MS.gene62301:CDS |
AGTAAGAGGTGATCCAGTGA+GGG | 0.649906 | 2.3:+21540824 | None:intergenic |
ATGGAGATGATATCCTCGGT+AGG | 0.658341 | 2.3:-21541198 | MS.gene62301:CDS |
TGGTGGTAACAGAGAAACAT+GGG | 0.661760 | 2.3:+21542981 | None:intergenic |
GTGGTGGTAACAGAGAAACA+TGG | 0.662480 | 2.3:+21542980 | None:intergenic |
ACTACACGCACAAAAGTCCC+CGG | 0.664955 | 2.3:-21542443 | MS.gene62301:CDS |
TAGTAAGAGGTGATCCAGTG+AGG | 0.666324 | 2.3:+21540823 | None:intergenic |
CTCACAAATAGTCGTAACTG+GGG | 0.668632 | 2.3:+21541240 | None:intergenic |
GGGAAACATGTATCAAAAGG+CGG | 0.673028 | 2.3:-21541278 | MS.gene62301:CDS |
AGGGAGCCGATGGCTACGTG+GGG | 0.678623 | 2.3:+21541735 | None:intergenic |
AGCTCTACTAGTGTACATTG+AGG | 0.685630 | 2.3:-21539975 | MS.gene62301:intron |
AGCTCTACTAGTGTACATTG+AGG | 0.685630 | 2.3:-21542663 | MS.gene62301:intron |
ACCCAAATAAGCAAATATTG+GGG | 0.688350 | 2.3:+21540057 | None:intergenic |
ACCCAAATAAGCAAATATTG+GGG | 0.688350 | 2.3:+21542745 | None:intergenic |
TCTGAAAATGAACTCAACCG+TGG | 0.690704 | 2.3:+21542941 | None:intergenic |
TGGATCACCTCTTACTACGG+AGG | 0.695905 | 2.3:-21540817 | MS.gene62301:CDS |
TCACAAATAGTCGTAACTGG+GGG | 0.709536 | 2.3:+21541241 | None:intergenic |
CACCTGCATATATCCTACCG+AGG | 0.713017 | 2.3:+21541185 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATATTATTTAAAAATT+TGG | - | chr2.3:21541713-21541732 | MS.gene62301:CDS | 0.0% |
!! | ACATATAATTTAAATATAAC+AGG | + | chr2.3:21540424-21540443 | None:intergenic | 10.0% |
!! | AACAATAACGTTAATTATAA+GGG | + | chr2.3:21542334-21542353 | None:intergenic | 15.0% |
!! | AAGATCAAGTAAATAATTAT+TGG | - | chr2.3:21541684-21541703 | MS.gene62301:CDS | 15.0% |
!! | ACAAAAAAAAAGGAAATATA+TGG | + | chr2.3:21541335-21541354 | None:intergenic | 15.0% |
!! | ATGGATGTAATTTAATTAAT+TGG | - | chr2.3:21541176-21541195 | MS.gene62301:CDS | 15.0% |
!! | TAACAATAACGTTAATTATA+AGG | + | chr2.3:21542335-21542354 | None:intergenic | 15.0% |
!! | TTCAAACAAAACAAAAAAAA+AGG | + | chr2.3:21541345-21541364 | None:intergenic | 15.0% |
!!! | ATTTTGTAAATTTCAAGTAT+TGG | - | chr2.3:21542631-21542650 | MS.gene62301:intron | 15.0% |
!!! | ATTTTGTAAATTTCAAGTTT+TGG | - | chr2.3:21539943-21539962 | MS.gene62301:intron | 15.0% |
!!! | TATAAAAGGTATGTTTTAAA+AGG | + | chr2.3:21540485-21540504 | None:intergenic | 15.0% |
!!! | TTTGATTTATCAAATATGAA+TGG | - | chr2.3:21541157-21541176 | MS.gene62301:CDS | 15.0% |
!!! | TTTTGTAAATTTCAAGTATT+GGG | - | chr2.3:21542632-21542651 | MS.gene62301:intron | 15.0% |
!!! | TTTTGTAAATTTCAAGTTTT+GGG | - | chr2.3:21539944-21539963 | MS.gene62301:intron | 15.0% |
!! | AAATAAAACTAACACAAAGT+AGG | + | chr2.3:21542119-21542138 | None:intergenic | 20.0% |
!! | AATAAAACTAACACAAAGTA+GGG | + | chr2.3:21542118-21542137 | None:intergenic | 20.0% |
!! | AATTTAATTAATTGGTATGC+AGG | - | chr2.3:21541184-21541203 | MS.gene62301:CDS | 20.0% |
!! | ATCAAGTAAATAATTATTGG+AGG | - | chr2.3:21541687-21541706 | MS.gene62301:CDS | 20.0% |
!! | GGTATGCTTAAAATTATAAA+AGG | + | chr2.3:21540499-21540518 | None:intergenic | 20.0% |
!! | TACAAAATATCTCTGTTTAA+AGG | + | chr2.3:21539931-21539950 | None:intergenic | 20.0% |
!! | TACTTACTTCTATAATGTTT+AGG | - | chr2.3:21541941-21541960 | MS.gene62301:intron | 20.0% |
!!! | AAACTATATGGTGTATTTTT+CGG | - | chr2.3:21540690-21540709 | MS.gene62301:intron | 20.0% |
!!! | ATTTTAGTTGAGATAGTATA+TGG | - | chr2.3:21542067-21542086 | MS.gene62301:intron | 20.0% |
!!! | TTTGTAAATTTCAAGTTTTG+GGG | - | chr2.3:21539945-21539964 | MS.gene62301:intron | 20.0% |
!!! | TTTTAGTTGAGATAGTATAT+GGG | - | chr2.3:21542068-21542087 | MS.gene62301:intron | 20.0% |
!!! | TTTTGTTTTGTTTGAACAAT+AGG | - | chr2.3:21541349-21541368 | MS.gene62301:intron | 20.0% |
! | AATAACGTTAATTATAAGGG+TGG | + | chr2.3:21542331-21542350 | None:intergenic | 25.0% |
! | AGAAAGTGACATTGTTAATT+CGG | - | chr2.3:21540010-21540029 | MS.gene62301:CDS | 25.0% |
! | ATAACGTTAATTATAAGGGT+GGG | + | chr2.3:21542330-21542349 | None:intergenic | 25.0% |
! | GTTAATCCAGATAAATATAC+TGG | - | chr2.3:21541600-21541619 | MS.gene62301:intron | 25.0% |
! | GTTCATAAAAATATGTATGC+AGG | + | chr2.3:21542554-21542573 | None:intergenic | 25.0% |
! | TAAGATGACACTACATAATT+AGG | + | chr2.3:21540914-21540933 | None:intergenic | 25.0% |
! | TATAAAGCAGAAACTTTCTT+TGG | + | chr2.3:21540520-21540539 | None:intergenic | 25.0% |
! | TATGAGTTAAAAGACTACTT+GGG | - | chr2.3:21541432-21541451 | MS.gene62301:intron | 25.0% |
! | TGGGTTCTTCTTTAATTAAA+AGG | + | chr2.3:21542282-21542301 | None:intergenic | 25.0% |
! | TTACCATGATGTTATTACAA+GGG | - | chr2.3:21541069-21541088 | MS.gene62301:intron | 25.0% |
! | TTATGAGTTAAAAGACTACT+TGG | - | chr2.3:21541431-21541450 | MS.gene62301:intron | 25.0% |
! | TTGAAAAAGCAGAAAAACAA+TGG | + | chr2.3:21540386-21540405 | None:intergenic | 25.0% |
! | TTTAGTTGAGATAGTATATG+GGG | - | chr2.3:21542069-21542088 | MS.gene62301:intron | 25.0% |
!! | AAAAAAATATAGTTTGCGAC+AGG | + | chr2.3:21540762-21540781 | None:intergenic | 25.0% |
!! | AAAAAATATAGTTTGCGACA+GGG | + | chr2.3:21540761-21540780 | None:intergenic | 25.0% |
!! | ATAAATTTGTTCATTGCTGA+AGG | + | chr2.3:21542407-21542426 | None:intergenic | 25.0% |
!! | ATTAATTTTCTTGTTAGCAC+CGG | - | chr2.3:21540163-21540182 | MS.gene62301:intron | 25.0% |
!! | GAACAATGTGAGAAATATTT+TGG | - | chr2.3:21541871-21541890 | MS.gene62301:intron | 25.0% |
!! | TAAATTTGTTCATTGCTGAA+GGG | + | chr2.3:21542406-21542425 | None:intergenic | 25.0% |
!!! | AAGTAGTCTTTTAACTCATA+AGG | + | chr2.3:21541432-21541451 | None:intergenic | 25.0% |
!!! | AATTGAAGGTTTTAGTGTTT+TGG | + | chr2.3:21539833-21539852 | None:intergenic | 25.0% |
!!! | ATACACCATATAGTTTTACT+TGG | + | chr2.3:21540686-21540705 | None:intergenic | 25.0% |
!!! | ATGATTATGTTTTTCTAGAG+TGG | + | chr2.3:21540857-21540876 | None:intergenic | 25.0% |
!!! | GTATGTTTTAAAAGGTTTCA+AGG | + | chr2.3:21540477-21540496 | None:intergenic | 25.0% |
!!! | TAGTAGAGCTTTAAAAGAAT+TGG | + | chr2.3:21540057-21540076 | None:intergenic | 25.0% |
AAATGCTGCATAATTAGCAA+GGG | + | chr2.3:21542947-21542966 | None:intergenic | 30.0% | |
AATCCCTTGTAATAACATCA+TGG | + | chr2.3:21541075-21541094 | None:intergenic | 30.0% | |
ACAAGCTCTGTTTAATTGAA+TGG | - | chr2.3:21540636-21540655 | MS.gene62301:intron | 30.0% | |
ACCCAAATAAGCAAATATTG+GGG | + | chr2.3:21539988-21540007 | None:intergenic | 30.0% | |
ACGAATCTATACGAAATTCT+TGG | - | chr2.3:21541225-21541244 | MS.gene62301:CDS | 30.0% | |
AGAAGTTCTGCTATATTTGA+AGG | - | chr2.3:21540260-21540279 | MS.gene62301:intron | 30.0% | |
AGGTAAGAGAATATTAGATG+AGG | + | chr2.3:21542233-21542252 | None:intergenic | 30.0% | |
ATCTTACGGCTATTTAAACT+CGG | - | chr2.3:21540215-21540234 | MS.gene62301:intron | 30.0% | |
CAAGCTCTGTTTAATTGAAT+GGG | - | chr2.3:21540637-21540656 | MS.gene62301:intron | 30.0% | |
CACCCAAATAAGCAAATATT+GGG | + | chr2.3:21539989-21540008 | None:intergenic | 30.0% | |
CAGGTCTTCATTTAAATTGA+AGG | + | chr2.3:21539847-21539866 | None:intergenic | 30.0% | |
CTTACCATGATGTTATTACA+AGG | - | chr2.3:21541068-21541087 | MS.gene62301:intron | 30.0% | |
TTTCTGATAGATAGTTGAAG+TGG | + | chr2.3:21539899-21539918 | None:intergenic | 30.0% | |
TTTGCACCAGTATATTTATC+TGG | + | chr2.3:21541609-21541628 | None:intergenic | 30.0% | |
! | AAATTTGTTCATTGCTGAAG+GGG | + | chr2.3:21542405-21542424 | None:intergenic | 30.0% |
! | AGATATCTTTTGTCAAGACT+TGG | - | chr2.3:21540814-21540833 | MS.gene62301:CDS | 30.0% |
!! | AATAACTATGCTGATTTACC+TGG | + | chr2.3:21541099-21541118 | None:intergenic | 30.0% |
!! | GTAAATTTCAAGTATTGGGA+TGG | - | chr2.3:21542636-21542655 | MS.gene62301:intron | 30.0% |
!! | TAGTAGAGCTTTAAAAGAAG+TGG | + | chr2.3:21542745-21542764 | None:intergenic | 30.0% |
!! | TTAAAGGTTTTGTAGCTTTC+TGG | + | chr2.3:21539915-21539934 | None:intergenic | 30.0% |
ACTGAAATAGTTATGCCTAC+TGG | - | chr2.3:21541793-21541812 | MS.gene62301:intron | 35.0% | |
AGATGAGGAACAGTTAACAA+GGG | + | chr2.3:21542218-21542237 | None:intergenic | 35.0% | |
AGCATTTCTGCTACATTTGA+AGG | - | chr2.3:21542960-21542979 | MS.gene62301:CDS | 35.0% | |
AGTGACATTGTTAATTCGGT+TGG | - | chr2.3:21540014-21540033 | MS.gene62301:CDS | 35.0% | |
ATAGCCGTAAGATGTGTTAA+AGG | + | chr2.3:21540208-21540227 | None:intergenic | 35.0% | |
ATGTTATCAAAGTAGAGCAG+TGG | + | chr2.3:21541034-21541053 | None:intergenic | 35.0% | |
CCAATATTTGCTTATTTGGG+TGG | - | chr2.3:21539987-21540006 | MS.gene62301:CDS | 35.0% | |
CCACCCAAATAAGCAAATAT+TGG | + | chr2.3:21539990-21540009 | None:intergenic | 35.0% | |
CTTAGAAAGTCAAGACCATT+TGG | + | chr2.3:21541278-21541297 | None:intergenic | 35.0% | |
CTTATGTTGTATGCGTCAAA+GGG | + | chr2.3:21542895-21542914 | None:intergenic | 35.0% | |
CTTGGGAAACATGTATCAAA+AGG | - | chr2.3:21541449-21541468 | MS.gene62301:CDS | 35.0% | |
GAAATGCTGCATAATTAGCA+AGG | + | chr2.3:21542948-21542967 | None:intergenic | 35.0% | |
GAACAGTTAACAAGGGAAAA+AGG | + | chr2.3:21542211-21542230 | None:intergenic | 35.0% | |
GATGACATTGTTAATTCGCT+TGG | - | chr2.3:21542702-21542721 | MS.gene62301:CDS | 35.0% | |
GCATACAACATAAGCTCTTT+GGG | - | chr2.3:21542901-21542920 | MS.gene62301:CDS | 35.0% | |
GCCCCAATATTTGCTTATTT+GGG | - | chr2.3:21539984-21540003 | MS.gene62301:CDS | 35.0% | |
GCTATCATCAATGTGATGAT+TGG | + | chr2.3:21540732-21540751 | None:intergenic | 35.0% | |
GTGCACCAAGTAAAACTATA+TGG | - | chr2.3:21540678-21540697 | MS.gene62301:intron | 35.0% | |
GTTCATAGAAATATGTCTGC+AGG | + | chr2.3:21539866-21539885 | None:intergenic | 35.0% | |
TAGATGAGGAACAGTTAACA+AGG | + | chr2.3:21542219-21542238 | None:intergenic | 35.0% | |
TAGCCGTAAGATGTGTTAAA+GGG | + | chr2.3:21540207-21540226 | None:intergenic | 35.0% | |
TCTTGTTAGCACTAGTACTA+CGG | - | chr2.3:21542859-21542878 | MS.gene62301:CDS | 35.0% | |
TGATGATTGGCAGATTATTG+AGG | + | chr2.3:21540719-21540738 | None:intergenic | 35.0% | |
TGCCCCAATATTTGCTTATT+TGG | - | chr2.3:21539983-21540002 | MS.gene62301:CDS | 35.0% | |
TGTTATTACAAGGGATTTCC+AGG | - | chr2.3:21541078-21541097 | MS.gene62301:intron | 35.0% | |
! | ACACAAAGTAGGGTAACTTT+TGG | + | chr2.3:21542108-21542127 | None:intergenic | 35.0% |
! | GGTTGAGTTCATTTTCAGAA+TGG | - | chr2.3:21539793-21539812 | MS.gene62301:CDS | 35.0% |
! | TTTCTGGTAGATAGTTGAAG+TGG | + | chr2.3:21542587-21542606 | None:intergenic | 35.0% |
!!! | GTAAATTTCAAGTTTTGGGG+TGG | - | chr2.3:21539948-21539967 | MS.gene62301:intron | 35.0% |
!!! | TAATTCGGTTGGTTTTGTGA+CGG | - | chr2.3:21540025-21540044 | MS.gene62301:CDS | 35.0% |
AACTCATAAGGCTGTTCCAA+GGG | + | chr2.3:21541420-21541439 | None:intergenic | 40.0% | |
AACTTCTGCGTAATCAGCAA+GGG | + | chr2.3:21540247-21540266 | None:intergenic | 40.0% | |
ACTATTTGTGAGGCCATTGA+TGG | - | chr2.3:21541501-21541520 | MS.gene62301:CDS | 40.0% | |
AGATTCGTAGCATGTCTTAC+TGG | + | chr2.3:21541213-21541232 | None:intergenic | 40.0% | |
AGCTCTACTAGTGTACATTG+AGG | - | chr2.3:21540067-21540086 | MS.gene62301:intron | 40.0% | |
ATAGTTATGCCTACTGGCAT+AGG | - | chr2.3:21541799-21541818 | MS.gene62301:intron | 40.0% | |
ATATATGCAGGTGTGTTTGC+TGG | - | chr2.3:21541555-21541574 | MS.gene62301:intron | 40.0% | |
CCTCACAAATAGTCGTAACT+GGG | + | chr2.3:21541494-21541513 | None:intergenic | 40.0% | |
CGCATACAACATAAGCTCTT+TGG | - | chr2.3:21542900-21542919 | MS.gene62301:CDS | 40.0% | |
CTCACAAATAGTCGTAACTG+GGG | + | chr2.3:21541493-21541512 | None:intergenic | 40.0% | |
CTTGTTAGCACTAGTACTAC+GGG | - | chr2.3:21542860-21542879 | MS.gene62301:CDS | 40.0% | |
GAAGTAGCATCTAAGCCAAA+TGG | - | chr2.3:21541260-21541279 | MS.gene62301:CDS | 40.0% | |
GAGATAGTATATGGGGATGA+GGG | - | chr2.3:21542076-21542095 | MS.gene62301:intron | 40.0% | |
GAGTATATGATGCAGCACAT+GGG | + | chr2.3:21542301-21542320 | None:intergenic | 40.0% | |
GCATCGTTGTGACTAATGTT+AGG | - | chr2.3:21542004-21542023 | MS.gene62301:intron | 40.0% | |
GCTTATGTTGTATGCGTCAA+AGG | + | chr2.3:21542896-21542915 | None:intergenic | 40.0% | |
GGGAAACATGTATCAAAAGG+CGG | - | chr2.3:21541452-21541471 | MS.gene62301:CDS | 40.0% | |
GTGCCCTTTAACACATCTTA+CGG | - | chr2.3:21540201-21540220 | MS.gene62301:intron | 40.0% | |
TAACTCATAAGGCTGTTCCA+AGG | + | chr2.3:21541421-21541440 | None:intergenic | 40.0% | |
TCACAAATAGTCGTAACTGG+GGG | + | chr2.3:21541492-21541511 | None:intergenic | 40.0% | |
TCTGAAAATGAACTCAACCG+TGG | + | chr2.3:21539792-21539811 | None:intergenic | 40.0% | |
TGAGATAGTATATGGGGATG+AGG | - | chr2.3:21542075-21542094 | MS.gene62301:intron | 40.0% | |
TGGTGGTAACAGAGAAACAT+GGG | + | chr2.3:21539752-21539771 | None:intergenic | 40.0% | |
!! | TAATTATAAGGGTGGGCTGA+AGG | + | chr2.3:21542323-21542342 | None:intergenic | 40.0% |
!! | TGATTTGTTCATTGCTGGTG+AGG | + | chr2.3:21542381-21542400 | None:intergenic | 40.0% |
ACATCATGGTAAGCACTTGC+TGG | + | chr2.3:21541061-21541080 | None:intergenic | 45.0% | |
ACCGAGGATATCATCTCCAT+AGG | + | chr2.3:21541532-21541551 | None:intergenic | 45.0% | |
ACTGGTGCAAAGCCATTTGA+TGG | - | chr2.3:21541618-21541637 | MS.gene62301:intron | 45.0% | |
AGTAAGAGGTGATCCAGTGA+GGG | + | chr2.3:21541909-21541928 | None:intergenic | 45.0% | |
ATCCTCGGTAGGATATATGC+AGG | - | chr2.3:21541543-21541562 | MS.gene62301:intron | 45.0% | |
ATGGAGATGATATCCTCGGT+AGG | - | chr2.3:21541532-21541551 | MS.gene62301:intron | 45.0% | |
CACTGGATCACCTCTTACTA+CGG | - | chr2.3:21541910-21541929 | MS.gene62301:intron | 45.0% | |
CCCAGTTACGACTATTTGTG+AGG | - | chr2.3:21541491-21541510 | MS.gene62301:CDS | 45.0% | |
CTCGTGAAGTTGAAAGGTTG+AGG | + | chr2.3:21541844-21541863 | None:intergenic | 45.0% | |
GAAAGGTTGAGGTTGAAGCA+AGG | + | chr2.3:21541833-21541852 | None:intergenic | 45.0% | |
GAACTTCTGCGTAATCAGCA+AGG | + | chr2.3:21540248-21540267 | None:intergenic | 45.0% | |
GAAGGATTTCCTATGCCAGT+AGG | + | chr2.3:21541811-21541830 | None:intergenic | 45.0% | |
GCATAGCTCGTGAAGTTGAA+AGG | + | chr2.3:21541850-21541869 | None:intergenic | 45.0% | |
GCCTATGGAGATGATATCCT+CGG | - | chr2.3:21541528-21541547 | MS.gene62301:intron | 45.0% | |
GCCTCACAAATAGTCGTAAC+TGG | + | chr2.3:21541495-21541514 | None:intergenic | 45.0% | |
GGAGTATATGATGCAGCACA+TGG | + | chr2.3:21542302-21542321 | None:intergenic | 45.0% | |
GTGGTGGTAACAGAGAAACA+TGG | + | chr2.3:21539753-21539772 | None:intergenic | 45.0% | |
TACTTGACCTCCGTAGTAAG+AGG | + | chr2.3:21541923-21541942 | None:intergenic | 45.0% | |
TAGTAAGAGGTGATCCAGTG+AGG | + | chr2.3:21541910-21541929 | None:intergenic | 45.0% | |
TGCCATCTCCAACCATCAAA+TGG | + | chr2.3:21541633-21541652 | None:intergenic | 45.0% | |
TTGTTCATTGCTGGTGAGGT+GGG | + | chr2.3:21542377-21542396 | None:intergenic | 45.0% | |
TTTGTTCATTGCTGGTGAGG+TGG | + | chr2.3:21542378-21542397 | None:intergenic | 45.0% | |
! | AGCCATTTGATGGTTGGAGA+TGG | - | chr2.3:21541628-21541647 | MS.gene62301:intron | 45.0% |
! | ATTATGCAGTGCTTGCTGCA+TGG | - | chr2.3:21540957-21540976 | MS.gene62301:intron | 45.0% |
! | ATTTGATGGTTGGAGATGGC+AGG | - | chr2.3:21541632-21541651 | MS.gene62301:intron | 45.0% |
! | GTGCAAAGCCATTTGATGGT+TGG | - | chr2.3:21541622-21541641 | MS.gene62301:intron | 45.0% |
!! | AACTCAACCGTAGAAGTGTC+AGG | + | chr2.3:21542470-21542489 | None:intergenic | 45.0% |
!! | ACTCAACCGTAGAAGTGTCA+GGG | + | chr2.3:21542469-21542488 | None:intergenic | 45.0% |
!! | GGGGTTGATTTGTTCATTGC+TGG | + | chr2.3:21542386-21542405 | None:intergenic | 45.0% |
!! | AAAAAATAACTTTAATTATA+AGG | + | chr2.3:21542253-21542272 | None:intergenic | 5.0% |
AAGTATCCCCACGTAGCCAT+CGG | - | chr2.3:21540989-21541008 | MS.gene62301:intron | 50.0% | |
ACAAAAGTCCCCGGTGATTG+TGG | - | chr2.3:21540296-21540315 | MS.gene62301:intron | 50.0% | |
ACTACACGCACAAAAGTCCC+CGG | - | chr2.3:21540287-21540306 | MS.gene62301:intron | 50.0% | |
CACCTGCATATATCCTACCG+AGG | + | chr2.3:21541548-21541567 | None:intergenic | 50.0% | |
CCAACTCCCTGACACTTCTA+CGG | - | chr2.3:21542460-21542479 | MS.gene62301:CDS | 50.0% | |
GGTTGAGGTTGAAGCAAGGA+AGG | + | chr2.3:21541829-21541848 | None:intergenic | 50.0% | |
TCCATAGGCAGCTCCATCAA+TGG | + | chr2.3:21541517-21541536 | None:intergenic | 50.0% | |
TGGATCACCTCTTACTACGG+AGG | - | chr2.3:21541913-21541932 | MS.gene62301:intron | 50.0% | |
TGTTCATTGCTGGTGAGGTG+GGG | + | chr2.3:21542376-21542395 | None:intergenic | 50.0% | |
! | CAGTGCTTGCTGCATGGTTT+CGG | - | chr2.3:21540963-21540982 | MS.gene62301:intron | 50.0% |
!! | AACTCAACCGTGGAAGTGTC+AGG | + | chr2.3:21539782-21539801 | None:intergenic | 50.0% |
!! | ACTCAACCGTGGAAGTGTCA+GGG | + | chr2.3:21539781-21539800 | None:intergenic | 50.0% |
!! | TAGAAGTGTCAGGGAGTTGG+TGG | + | chr2.3:21542460-21542479 | None:intergenic | 50.0% |
!! | TCTTGTTAGCACCGGTGCTA+CGG | - | chr2.3:21540171-21540190 | MS.gene62301:intron | 50.0% |
AAGTCCCCGGTGATTGTGGT+TGG | - | chr2.3:21540300-21540319 | MS.gene62301:intron | 55.0% | |
AGTCCCCGGTGATTGTGGTT+GGG | - | chr2.3:21540301-21540320 | MS.gene62301:intron | 55.0% | |
ATCCCCCAACCACAATCACC+GGG | + | chr2.3:21540308-21540327 | None:intergenic | 55.0% | |
CAGTGGAGCTGATGAAGCCA+GGG | + | chr2.3:21541017-21541036 | None:intergenic | 55.0% | |
CCAACTCCCTGACACTTCCA+CGG | - | chr2.3:21539772-21539791 | MS.gene62301:CDS | 55.0% | |
CTGTTCCAAGGGACTGCAAG+AGG | + | chr2.3:21541409-21541428 | None:intergenic | 55.0% | |
GATCCCCCAACCACAATCAC+CGG | + | chr2.3:21540309-21540328 | None:intergenic | 55.0% | |
GCCATTGATGGAGCTGCCTA+TGG | - | chr2.3:21541513-21541532 | MS.gene62301:CDS | 55.0% | |
TTCCAAGGGACTGCAAGAGG+TGG | + | chr2.3:21541406-21541425 | None:intergenic | 55.0% | |
! | GCAGGTGTGTTTGCTGGCTA+TGG | - | chr2.3:21541561-21541580 | MS.gene62301:intron | 55.0% |
! | TGGGGTGAAGGAGAGTGTGA+AGG | + | chr2.3:21542358-21542377 | None:intergenic | 55.0% |
!! | AAGTGTCAGGGAGTTGGTGG+CGG | + | chr2.3:21539769-21539788 | None:intergenic | 55.0% |
!! | AAGTGTCAGGGAGTTGGTGG+TGG | + | chr2.3:21539769-21539788 | None:intergenic | 55.0% |
!! | CCGTAGAAGTGTCAGGGAGT+TGG | + | chr2.3:21542463-21542482 | None:intergenic | 55.0% |
!! | CTTGTTAGCACCGGTGCTAC+GGG | - | chr2.3:21540172-21540191 | MS.gene62301:intron | 55.0% |
!! | TGGAAGTGTCAGGGAGTTGG+TGG | + | chr2.3:21539772-21539791 | None:intergenic | 55.0% |
GCAGTGGAGCTGATGAAGCC+AGG | + | chr2.3:21541018-21541037 | None:intergenic | 60.0% | |
GTCCCCGGTGATTGTGGTTG+GGG | - | chr2.3:21540302-21540321 | MS.gene62301:intron | 60.0% | |
GTGGTTGGGGGATCATACGC+TGG | - | chr2.3:21540315-21540334 | MS.gene62301:intron | 60.0% | |
TCCCCCAACCACAATCACCG+GGG | + | chr2.3:21540307-21540326 | None:intergenic | 60.0% | |
TCCCCGGTGATTGTGGTTGG+GGG | - | chr2.3:21540303-21540322 | MS.gene62301:intron | 60.0% | |
TGATCCAGTGAGGGCGAGGT+TGG | + | chr2.3:21541900-21541919 | None:intergenic | 60.0% | |
TGATGAAGCCAGGGAGCCGA+TGG | + | chr2.3:21541008-21541027 | None:intergenic | 60.0% | |
TGCCACCTCTTGCAGTCCCT+TGG | - | chr2.3:21541401-21541420 | MS.gene62301:intron | 60.0% | |
TTGCTGGTGAGGTGGGGTGA+AGG | + | chr2.3:21542370-21542389 | None:intergenic | 60.0% | |
!! | CCGTGGAAGTGTCAGGGAGT+TGG | + | chr2.3:21539775-21539794 | None:intergenic | 60.0% |
!! | GCACTGACTTCCCGTAGCAC+CGG | + | chr2.3:21540185-21540204 | None:intergenic | 60.0% |
AGGGAGCCGATGGCTACGTG+GGG | + | chr2.3:21540998-21541017 | None:intergenic | 65.0% | |
CAGGGAGCCGATGGCTACGT+GGG | + | chr2.3:21540999-21541018 | None:intergenic | 65.0% | |
GAGGTGATCCAGTGAGGGCG+AGG | + | chr2.3:21541904-21541923 | None:intergenic | 65.0% | |
GTGTCCAACCTCGCCCTCAC+TGG | - | chr2.3:21541893-21541912 | MS.gene62301:intron | 65.0% | |
CCAGGGAGCCGATGGCTACG+TGG | + | chr2.3:21541000-21541019 | None:intergenic | 70.0% | |
!! | CCACGTAGCCATCGGCTCCC+TGG | - | chr2.3:21540997-21541016 | MS.gene62301:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 21539708 | 21543044 | 21539708 | ID=MS.gene62301 |
chr2.3 | mRNA | 21539708 | 21543044 | 21539708 | ID=MS.gene62301.t1;Parent=MS.gene62301 |
chr2.3 | exon | 21542664 | 21543044 | 21542664 | ID=MS.gene62301.t1.exon1;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21542664 | 21543044 | 21542664 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21542413 | 21542572 | 21542413 | ID=MS.gene62301.t1.exon2;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21542413 | 21542572 | 21542413 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21541653 | 21541786 | 21541653 | ID=MS.gene62301.t1.exon3;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21541653 | 21541786 | 21541653 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21541434 | 21541546 | 21541434 | ID=MS.gene62301.t1.exon4;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21541434 | 21541546 | 21541434 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21541099 | 21541336 | 21541099 | ID=MS.gene62301.t1.exon5;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21541099 | 21541336 | 21541099 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21540790 | 21540965 | 21540790 | ID=MS.gene62301.t1.exon6;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21540790 | 21540965 | 21540790 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21539976 | 21540081 | 21539976 | ID=MS.gene62301.t1.exon7;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21539976 | 21540081 | 21539976 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
chr2.3 | exon | 21539708 | 21539878 | 21539708 | ID=MS.gene62301.t1.exon8;Parent=MS.gene62301.t1 |
chr2.3 | CDS | 21539708 | 21539878 | 21539708 | ID=cds.MS.gene62301.t1;Parent=MS.gene62301.t1 |
Gene Sequence |
Protein sequence |