AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62658

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62658.t1 MTR_8g105910 96.785 311 10 0 1 311 1 311 0.0 610
MS.gene62658.t1 MTR_1g032860 66.450 307 101 2 1 307 1 305 8.70e-141 400
MS.gene62658.t1 MTR_8g066460 53.333 270 116 2 31 290 3 272 3.64e-93 278
MS.gene62658.t1 MTR_8g066460 53.333 270 116 2 31 290 19 288 9.70e-93 277
MS.gene62658.t1 MTR_5g029640 58.607 244 97 1 31 270 3 246 6.01e-90 276
MS.gene62658.t1 MTR_5g029640 60.000 140 56 0 131 270 279 418 3.29e-46 162
MS.gene62658.t1 MTR_7g086080 40.964 249 129 2 32 262 4 252 1.66e-62 199
MS.gene62658.t1 MTR_5g039130 38.115 244 128 3 27 251 3 242 1.27e-45 155
MS.gene62658.t1 MTR_7g010100 34.818 247 129 6 33 251 7 249 2.18e-31 118
MS.gene62658.t1 MTR_5g038107 63.333 60 22 0 31 90 3 62 2.08e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62658.t1 AT4G17720 57.037 270 102 5 33 295 5 267 7.39e-95 283
MS.gene62658.t1 AT1G67950 55.906 254 105 1 17 270 14 260 1.67e-94 281
MS.gene62658.t1 AT1G67950 57.613 243 96 1 28 270 26 261 2.76e-94 281
MS.gene62658.t1 AT1G67950 56.078 255 104 2 17 270 14 261 2.57e-93 278
MS.gene62658.t1 AT5G46870 57.500 240 92 1 33 262 5 244 3.61e-88 266
MS.gene62658.t1 AT5G46870 57.500 240 92 1 33 262 5 244 3.61e-88 266
MS.gene62658.t1 AT5G16840 54.741 232 102 2 29 260 3 231 4.95e-81 246
MS.gene62658.t1 AT5G16840 54.741 232 101 2 29 260 3 230 2.08e-80 244
MS.gene62658.t1 AT5G16840 54.783 230 100 2 31 260 3 228 7.59e-80 243
MS.gene62658.t1 AT1G67950 54.808 208 87 1 63 270 1 201 3.40e-73 225
MS.gene62658.t1 AT5G32450 44.400 250 120 2 32 262 5 254 4.92e-67 211
MS.gene62658.t1 AT1G14340 37.021 235 129 3 34 253 9 239 1.31e-41 144
MS.gene62658.t1 AT3G01210 33.478 230 125 5 35 241 9 233 2.73e-26 104
MS.gene62658.t1 AT3G01210 33.478 230 125 5 35 241 9 233 2.73e-26 104

Find 60 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAACCCCTTGATCTTTA+TGG 0.155369 4.2:-1088755 None:intergenic
TGCTCCCTGTGTATTCTTAA+AGG 0.217148 4.2:-1089508 None:intergenic
GGGCTAAATGGTTGAGCTTC+AGG 0.225136 4.2:-1089755 None:intergenic
GAGACATTAATTGTCCAATT+TGG 0.261504 4.2:-1088801 None:intergenic
CCTGATTTAACAGGATCTTT+TGG 0.271247 4.2:-1090587 None:intergenic
AATCTACAATTACACCAAAT+TGG 0.277160 4.2:+1088787 MS.gene62658:CDS
CAGCAGCAGGAGTCTGCTTT+TGG 0.298826 4.2:-1090058 None:intergenic
ATGGCGTTCGTCAAAGGATT+TGG 0.339452 4.2:-1090156 None:intergenic
ATTTGGTGTAATTGTAGATT+GGG 0.343560 4.2:-1088784 None:intergenic
TCAGGTGATGATAGTAGGTT+TGG 0.364482 4.2:+1090605 MS.gene62658:CDS
CTATCATCACCTGATTTAAC+AGG 0.366026 4.2:-1090596 None:intergenic
TAGGTGCTTACAGGGCTAAA+TGG 0.380682 4.2:-1089767 None:intergenic
GCTTCCATCGACCGTAAAAT+CGG 0.392626 4.2:+1090209 MS.gene62658:CDS
CCAAAAGATCCTGTTAAATC+AGG 0.398256 4.2:+1090587 MS.gene62658:CDS
AATTTGGTGTAATTGTAGAT+TGG 0.408821 4.2:-1088785 None:intergenic
AAACTCTTTGATATCCTTCT+CGG 0.411550 4.2:-1089304 None:intergenic
GGCTAAATGGTTGAGCTTCA+GGG 0.422409 4.2:-1089754 None:intergenic
TTAAATCAGGTGATGATAGT+AGG 0.425617 4.2:+1090600 MS.gene62658:CDS
TTGACTGATAAACTAAGTAT+TGG 0.438409 4.2:+1090233 MS.gene62658:CDS
GAGCAAAAGGCAAGTGATGC+TGG 0.451069 4.2:+1090341 MS.gene62658:CDS
AGCAATCCTTATGTATCAAC+CGG 0.460676 4.2:+1090377 MS.gene62658:CDS
TCAAATGGCGTGATGGTGAC+AGG 0.461655 4.2:-1089716 None:intergenic
TCAGCCTTCTTAACAGCAGC+AGG 0.470780 4.2:-1090071 None:intergenic
GACCATGGAGAAGGTCGAAA+TGG 0.472925 4.2:+1090463 MS.gene62658:CDS
ATGTATCAACCGGAGCTTCG+TGG 0.477069 4.2:+1090387 MS.gene62658:CDS
AAGAGATCATTTACAGTGAA+AGG 0.479981 4.2:+1090501 MS.gene62658:CDS
AACAAAACCTTTGGCAAGCA+TGG 0.482332 4.2:-1090108 None:intergenic
GACTCCTGCTGCTGTTAAGA+AGG 0.488682 4.2:+1090067 MS.gene62658:CDS
GCTAAATGGTTGAGCTTCAG+GGG 0.488998 4.2:-1089753 None:intergenic
CCAGTGGACCATAAAGATCA+AGG 0.496454 4.2:+1088747 MS.gene62658:CDS
CAGGTGATGATAGTAGGTTT+GGG 0.497873 4.2:+1090606 MS.gene62658:CDS
TTATGCTGTTGCTGAGCAAA+AGG 0.504065 4.2:+1090328 MS.gene62658:CDS
CCTTGATCTTTATGGTCCAC+TGG 0.505164 4.2:-1088747 None:intergenic
CAAGTGATGGCGTTCGTCAA+AGG 0.508940 4.2:-1090162 None:intergenic
GACAGGAGAATTTGCTATGT+TGG 0.511315 4.2:-1089699 None:intergenic
GCTCGACACCCACGAAGCTC+CGG 0.518595 4.2:-1090396 None:intergenic
GACCATAAAGATCAAGGGGT+TGG 0.525650 4.2:+1088753 MS.gene62658:CDS
GAAGCTCCGGTTGATACATA+AGG 0.526434 4.2:-1090383 None:intergenic
GGCCATTTCGACCTTCTCCA+TGG 0.533969 4.2:-1090465 None:intergenic
TGTATCAACCGGAGCTTCGT+GGG 0.542390 4.2:+1090388 MS.gene62658:CDS
CACTCTGAGAAACCTTCAGT+TGG 0.554582 4.2:+1090554 MS.gene62658:CDS
AGACACAGCGGTGCTCTTGA+CGG 0.555982 4.2:+1089530 MS.gene62658:CDS
GACCTTCTCCATGGTCATTG+TGG 0.556836 4.2:-1090456 None:intergenic
GGAGAAGTACTTCCAACTGA+AGG 0.564400 4.2:-1090566 None:intergenic
TTATTATATGCAGGTTCCAG+TGG 0.564713 4.2:+1088731 MS.gene62658:intron
CAGTGGACCATAAAGATCAA+GGG 0.577238 4.2:+1088748 MS.gene62658:CDS
TTTGGTGTAATTGTAGATTG+GGG 0.593002 4.2:-1088783 None:intergenic
GGAGAAGGTCGAAATGGCCG+AGG 0.599248 4.2:+1090469 MS.gene62658:CDS
GTGAGCACCATGCTTGCCAA+AGG 0.609575 4.2:+1090101 MS.gene62658:CDS
ATCAATGACTGCGACCGAGA+AGG 0.612115 4.2:+1089290 MS.gene62658:CDS
GATCTCTTTCTTATCAACCT+CGG 0.612294 4.2:-1090486 None:intergenic
AAGCATTTGAAATCAAGTGA+TGG 0.615986 4.2:-1090175 None:intergenic
TGTTACCTTTAAGAATACAC+AGG 0.630422 4.2:+1089503 MS.gene62658:CDS
ACGGTCGATGGAAGCAACTG+TGG 0.631720 4.2:-1090201 None:intergenic
AACCACAATGACCATGGAGA+AGG 0.639861 4.2:+1090454 MS.gene62658:CDS
AGATGTAACCACAATGACCA+TGG 0.653319 4.2:+1090448 MS.gene62658:CDS
AGTGGACCATAAAGATCAAG+GGG 0.658714 4.2:+1088749 MS.gene62658:CDS
CTAAATGGTTGAGCTTCAGG+GGG 0.664028 4.2:-1089752 None:intergenic
GTTACCTTTAAGAATACACA+GGG 0.687476 4.2:+1089504 MS.gene62658:CDS
TACACAGGGAGCAGACACAG+CGG 0.763107 4.2:+1089518 MS.gene62658:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGATTATTATTATTATTAT+TGG + chr4.2:1089635-1089654 MS.gene62658:intron 10.0%
!! GTAATAAAGTAATATAAATA+TGG + chr4.2:1088493-1088512 MS.gene62658:intron 10.0%
!! TATACATCTTATAAATTTAT+CGG - chr4.2:1089916-1089935 None:intergenic 10.0%
!! TTATATATTCTATTTATCAA+TGG - chr4.2:1089597-1089616 None:intergenic 10.0%
!!! AGATATAATATTTGTTTTGA+AGG - chr4.2:1089130-1089149 None:intergenic 15.0%
!! ATTACAAATCATAGATTGAA+TGG - chr4.2:1088478-1088497 None:intergenic 20.0%
!! TAATAACTAGATCCATATAT+AGG - chr4.2:1088317-1088336 None:intergenic 20.0%
!!! AGAAGTTCATATTTTAATCA+AGG - chr4.2:1088657-1088676 None:intergenic 20.0%
!!! AGCATTTTATTATTATATGC+AGG + chr4.2:1088722-1088741 MS.gene62658:intron 20.0%
!!! TTTTTATGTGTTCCTATATA+TGG + chr4.2:1088302-1088321 MS.gene62658:intron 20.0%
! AATCTACAATTACACCAAAT+TGG + chr4.2:1088787-1088806 MS.gene62658:CDS 25.0%
! AGGTAAAAATGAATCAACTT+AGG - chr4.2:1089237-1089256 None:intergenic 25.0%
! ATAAATCCATAAATGCATAG+TGG + chr4.2:1089024-1089043 MS.gene62658:intron 25.0%
! ATCACAAATTGATGAATATC+AGG + chr4.2:1088582-1088601 MS.gene62658:intron 25.0%
! ATTAAGATGGAAGGAAAAAA+AGG - chr4.2:1089393-1089412 None:intergenic 25.0%
! GAACAGATAAAAACTAACTT+AGG - chr4.2:1089789-1089808 None:intergenic 25.0%
! TAATTCGATACTGGTATTAT+AGG - chr4.2:1089818-1089837 None:intergenic 25.0%
! TCACAAATTGATGAATATCA+GGG + chr4.2:1088583-1088602 MS.gene62658:intron 25.0%
! TTCATCAATTTGTGATTTGA+TGG - chr4.2:1088578-1088597 None:intergenic 25.0%
! TTGACTGATAAACTAAGTAT+TGG + chr4.2:1090233-1090252 MS.gene62658:CDS 25.0%
!! ATTTTCACAATTCACTTACA+TGG + chr4.2:1089441-1089460 MS.gene62658:intron 25.0%
!! TTTTCCTAAAACAAAACCTT+TGG - chr4.2:1090120-1090139 None:intergenic 25.0%
!!! AAAGGTTTTGTTTTAGGAAA+AGG + chr4.2:1090119-1090138 MS.gene62658:CDS 25.0%
!!! AATTTGGTGTAATTGTAGAT+TGG - chr4.2:1088788-1088807 None:intergenic 25.0%
!!! ATTTGGTGTAATTGTAGATT+GGG - chr4.2:1088787-1088806 None:intergenic 25.0%
AAACTCTTTGATATCCTTCT+CGG - chr4.2:1089307-1089326 None:intergenic 30.0%
AAATATGGTGATCCCTAATA+AGG + chr4.2:1088508-1088527 MS.gene62658:intron 30.0%
AAATGAAAAAGTGAGAGAGA+TGG + chr4.2:1090268-1090287 MS.gene62658:CDS 30.0%
AAGAGATCATTTACAGTGAA+AGG + chr4.2:1090501-1090520 MS.gene62658:CDS 30.0%
AATACCAACACATGACAATA+AGG - chr4.2:1089154-1089173 None:intergenic 30.0%
AGAGATGGATGAAAAATTTC+AGG + chr4.2:1090283-1090302 MS.gene62658:CDS 30.0%
ATATTTATATTGCAGTGTCC+AGG - chr4.2:1088927-1088946 None:intergenic 30.0%
ATGCTTCTCTTTATAGTACA+GGG + chr4.2:1089674-1089693 MS.gene62658:intron 30.0%
CTAGAGTGAAAACATGATAT+TGG - chr4.2:1088901-1088920 None:intergenic 30.0%
GAGACATTAATTGTCCAATT+TGG - chr4.2:1088804-1088823 None:intergenic 30.0%
GTATGACTCATTTATTTAGC+AGG + chr4.2:1089866-1089885 MS.gene62658:intron 30.0%
TTAAATCAGGTGATGATAGT+AGG + chr4.2:1090600-1090619 MS.gene62658:CDS 30.0%
TTATCTTAGCAGTAAAAGTG+TGG + chr4.2:1089835-1089854 MS.gene62658:intron 30.0%
TTGAATCCACTATGCATTTA+TGG - chr4.2:1089033-1089052 None:intergenic 30.0%
! AAAGAGTTTTTCTCATTCTC+TGG + chr4.2:1089318-1089337 MS.gene62658:CDS 30.0%
! AAGCATTTGAAATCAAGTGA+TGG - chr4.2:1090178-1090197 None:intergenic 30.0%
! ATAATTTTCAAATGGCGTGA+TGG - chr4.2:1089726-1089745 None:intergenic 30.0%
! GGAAGCTGATAATTTTCAAA+TGG - chr4.2:1089734-1089753 None:intergenic 30.0%
! GTTACCTTTAAGAATACACA+GGG + chr4.2:1089504-1089523 MS.gene62658:CDS 30.0%
! TGTTACCTTTAAGAATACAC+AGG + chr4.2:1089503-1089522 MS.gene62658:CDS 30.0%
! TTTGGTGTAATTGTAGATTG+GGG - chr4.2:1088786-1088805 None:intergenic 30.0%
! TTTTCTGATTATGTTGTAGC+AGG - chr4.2:1088955-1088974 None:intergenic 30.0%
!! AATGCATAGTGGATTCAAAT+TGG + chr4.2:1089035-1089054 MS.gene62658:intron 30.0%
!! AGTTGATTCATTTTTACCTC+TGG + chr4.2:1089238-1089257 MS.gene62658:intron 30.0%
!! ATGCATAGTGGATTCAAATT+GGG + chr4.2:1089036-1089055 MS.gene62658:intron 30.0%
!! TATCAGTCAAACCGATTTTA+CGG - chr4.2:1090223-1090242 None:intergenic 30.0%
!!! ACTTACATGGATTTTTTTGC+AGG + chr4.2:1089454-1089473 MS.gene62658:intron 30.0%
!!! CTTACATGGATTTTTTTGCA+GGG + chr4.2:1089455-1089474 MS.gene62658:intron 30.0%
!!! TTGCTGATTTTAACTGCTTT+TGG + chr4.2:1089099-1089118 MS.gene62658:intron 30.0%
AAAAAAAGGATTGCATTGCG+AGG - chr4.2:1089379-1089398 None:intergenic 35.0%
AAACTAACTTAGGTGCTTAC+AGG - chr4.2:1089779-1089798 None:intergenic 35.0%
AACTAACTTAGGTGCTTACA+GGG - chr4.2:1089778-1089797 None:intergenic 35.0%
AGCAATCCTTATGTATCAAC+CGG + chr4.2:1090377-1090396 MS.gene62658:CDS 35.0%
AGCAATGACACTCATTAAGA+TGG - chr4.2:1089406-1089425 None:intergenic 35.0%
ATGACACTCATTAAGATGGA+AGG - chr4.2:1089402-1089421 None:intergenic 35.0%
CACTACAATTACAAACACAG+TGG - chr4.2:1088609-1088628 None:intergenic 35.0%
CATGCTTCTCTTTATAGTAC+AGG + chr4.2:1089673-1089692 MS.gene62658:intron 35.0%
CCAAAAGATCCTGTTAAATC+AGG + chr4.2:1090587-1090606 MS.gene62658:CDS 35.0%
CTATCATCACCTGATTTAAC+AGG - chr4.2:1090599-1090618 None:intergenic 35.0%
CTGCTAAGATAATTCGATAC+TGG - chr4.2:1089827-1089846 None:intergenic 35.0%
GATCTCTTTCTTATCAACCT+CGG - chr4.2:1090489-1090508 None:intergenic 35.0%
GGTGCATGAAAATACATCAA+TGG + chr4.2:1088550-1088569 MS.gene62658:intron 35.0%
TAACCTTTGATGTTGATCTC+AGG + chr4.2:1090034-1090053 MS.gene62658:intron 35.0%
TTACCTCTGGCAGATAAAAA+CGG + chr4.2:1089251-1089270 MS.gene62658:intron 35.0%
TTATTATATGCAGGTTCCAG+TGG + chr4.2:1088731-1088750 MS.gene62658:intron 35.0%
! CCTGATTTAACAGGATCTTT+TGG - chr4.2:1090590-1090609 None:intergenic 35.0%
! TGATCCCTAATAAGGTTGAT+GGG + chr4.2:1088516-1088535 MS.gene62658:intron 35.0%
!!! CTTGCCAAAGGTTTTGTTTT+AGG + chr4.2:1090113-1090132 MS.gene62658:CDS 35.0%
AACAAAACCTTTGGCAAGCA+TGG - chr4.2:1090111-1090130 None:intergenic 40.0%
AGATGTAACCACAATGACCA+TGG + chr4.2:1090448-1090467 MS.gene62658:CDS 40.0%
AGTGGACCATAAAGATCAAG+GGG + chr4.2:1088749-1088768 MS.gene62658:CDS 40.0%
CAGGTGATGATAGTAGGTTT+GGG + chr4.2:1090606-1090625 MS.gene62658:CDS 40.0%
CAGTGGACCATAAAGATCAA+GGG + chr4.2:1088748-1088767 MS.gene62658:CDS 40.0%
CTGGCAGATAAAAACGGTTA+AGG + chr4.2:1089257-1089276 MS.gene62658:intron 40.0%
GATTGAATGGTCTACACGTA+CGG - chr4.2:1088465-1088484 None:intergenic 40.0%
GTGATCCCTAATAAGGTTGA+TGG + chr4.2:1088515-1088534 MS.gene62658:intron 40.0%
TCAGGTGATGATAGTAGGTT+TGG + chr4.2:1090605-1090624 MS.gene62658:CDS 40.0%
TGCTCCCTGTGTATTCTTAA+AGG - chr4.2:1089511-1089530 None:intergenic 40.0%
TTATGCTGTTGCTGAGCAAA+AGG + chr4.2:1090328-1090347 MS.gene62658:CDS 40.0%
! ATGTTTTCACTCTAGATGCC+TGG + chr4.2:1088906-1088925 MS.gene62658:intron 40.0%
! TCTGCCTTATTGTCATGTGT+TGG + chr4.2:1089147-1089166 MS.gene62658:intron 40.0%
!! GACAGGAGAATTTGCTATGT+TGG - chr4.2:1089702-1089721 None:intergenic 40.0%
!! TAACCGTTTTTATCTGCCAG+AGG - chr4.2:1089257-1089276 None:intergenic 40.0%
AACCACAATGACCATGGAGA+AGG + chr4.2:1090454-1090473 MS.gene62658:CDS 45.0%
ACCCTCCCATCAACCTTATT+AGG - chr4.2:1088524-1088543 None:intergenic 45.0%
ATGGCGTTCGTCAAAGGATT+TGG - chr4.2:1090159-1090178 None:intergenic 45.0%
CCAGTGGACCATAAAGATCA+AGG + chr4.2:1088747-1088766 MS.gene62658:CDS 45.0%
CCCTCCCATCAACCTTATTA+GGG - chr4.2:1088523-1088542 None:intergenic 45.0%
CCTTGATCTTTATGGTCCAC+TGG - chr4.2:1088750-1088769 None:intergenic 45.0%
CTAAATGGTTGAGCTTCAGG+GGG - chr4.2:1089755-1089774 None:intergenic 45.0%
CTCCAACCCCTTGATCTTTA+TGG - chr4.2:1088758-1088777 None:intergenic 45.0%
GACCATAAAGATCAAGGGGT+TGG + chr4.2:1088753-1088772 MS.gene62658:CDS 45.0%
GCTAAATGGTTGAGCTTCAG+GGG - chr4.2:1089756-1089775 None:intergenic 45.0%
GCTTCCATCGACCGTAAAAT+CGG + chr4.2:1090209-1090228 MS.gene62658:CDS 45.0%
GGCTAAATGGTTGAGCTTCA+GGG - chr4.2:1089757-1089776 None:intergenic 45.0%
GGTCCTGAGATCAACATCAA+AGG - chr4.2:1090040-1090059 None:intergenic 45.0%
TAGGTGCTTACAGGGCTAAA+TGG - chr4.2:1089770-1089789 None:intergenic 45.0%
! CACTCTGAGAAACCTTCAGT+TGG + chr4.2:1090554-1090573 MS.gene62658:CDS 45.0%
! GAAGCTCCGGTTGATACATA+AGG - chr4.2:1090386-1090405 None:intergenic 45.0%
!! CAAACCGATTTTACGGTCGA+TGG - chr4.2:1090216-1090235 None:intergenic 45.0%
!! CCCTAATAAGGTTGATGGGA+GGG + chr4.2:1088520-1088539 MS.gene62658:intron 45.0%
!! GGAGAAGTACTTCCAACTGA+AGG - chr4.2:1090569-1090588 None:intergenic 45.0%
!! GGTTGATGGGAGGGTAATAT+TGG + chr4.2:1088529-1088548 MS.gene62658:intron 45.0%
!! TCCCTAATAAGGTTGATGGG+AGG + chr4.2:1088519-1088538 MS.gene62658:intron 45.0%
!! TAAAATAAAATATATGAATT+TGG + chr4.2:1088873-1088892 MS.gene62658:intron 5.0%
ATCAATGACTGCGACCGAGA+AGG + chr4.2:1089290-1089309 MS.gene62658:CDS 50.0%
ATGTATCAACCGGAGCTTCG+TGG + chr4.2:1090387-1090406 MS.gene62658:CDS 50.0%
GACCATGGAGAAGGTCGAAA+TGG + chr4.2:1090463-1090482 MS.gene62658:CDS 50.0%
GACCTTCTCCATGGTCATTG+TGG - chr4.2:1090459-1090478 None:intergenic 50.0%
GACTCCTGCTGCTGTTAAGA+AGG + chr4.2:1090067-1090086 MS.gene62658:CDS 50.0%
GAGCAAAAGGCAAGTGATGC+TGG + chr4.2:1090341-1090360 MS.gene62658:CDS 50.0%
GGGCTAAATGGTTGAGCTTC+AGG - chr4.2:1089758-1089777 None:intergenic 50.0%
TCAGCCTTCTTAACAGCAGC+AGG - chr4.2:1090074-1090093 None:intergenic 50.0%
TGAATGGTCTACACGTACGG+AGG - chr4.2:1088462-1088481 None:intergenic 50.0%
TGTATCAACCGGAGCTTCGT+GGG + chr4.2:1090388-1090407 MS.gene62658:CDS 50.0%
! CAAGTGATGGCGTTCGTCAA+AGG - chr4.2:1090165-1090184 None:intergenic 50.0%
! TCAAATGGCGTGATGGTGAC+AGG - chr4.2:1089719-1089738 None:intergenic 50.0%
ACGGTCGATGGAAGCAACTG+TGG - chr4.2:1090204-1090223 None:intergenic 55.0%
AGACACAGCGGTGCTCTTGA+CGG + chr4.2:1089530-1089549 MS.gene62658:CDS 55.0%
GGCCATTTCGACCTTCTCCA+TGG - chr4.2:1090468-1090487 None:intergenic 55.0%
GTGAGCACCATGCTTGCCAA+AGG + chr4.2:1090101-1090120 MS.gene62658:CDS 55.0%
TACACAGGGAGCAGACACAG+CGG + chr4.2:1089518-1089537 MS.gene62658:CDS 55.0%
! CAGCAGCAGGAGTCTGCTTT+TGG - chr4.2:1090061-1090080 None:intergenic 55.0%
CAGCGGTGCTCTTGACGGTA+TGG + chr4.2:1089535-1089554 MS.gene62658:intron 60.0%
GGAGAAGGTCGAAATGGCCG+AGG + chr4.2:1090469-1090488 MS.gene62658:CDS 60.0%
GCTCGACACCCACGAAGCTC+CGG - chr4.2:1090399-1090418 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1088227 1090637 1088227 ID=MS.gene62658
chr4.2 mRNA 1088227 1090637 1088227 ID=MS.gene62658.t1;Parent=MS.gene62658
chr4.2 exon 1088227 1088232 1088227 ID=MS.gene62658.t1.exon1;Parent=MS.gene62658.t1
chr4.2 CDS 1088227 1088232 1088227 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
chr4.2 exon 1088744 1088827 1088744 ID=MS.gene62658.t1.exon2;Parent=MS.gene62658.t1
chr4.2 CDS 1088744 1088827 1088744 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
chr4.2 exon 1089264 1089367 1089264 ID=MS.gene62658.t1.exon3;Parent=MS.gene62658.t1
chr4.2 CDS 1089264 1089367 1089264 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
chr4.2 exon 1089476 1089551 1089476 ID=MS.gene62658.t1.exon4;Parent=MS.gene62658.t1
chr4.2 CDS 1089476 1089551 1089476 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
chr4.2 exon 1089695 1089778 1089695 ID=MS.gene62658.t1.exon5;Parent=MS.gene62658.t1
chr4.2 CDS 1089695 1089778 1089695 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
chr4.2 exon 1090056 1090637 1090056 ID=MS.gene62658.t1.exon6;Parent=MS.gene62658.t1
chr4.2 CDS 1090056 1090637 1090056 ID=cds.MS.gene62658.t1;Parent=MS.gene62658.t1
Gene Sequence

>MS.gene62658

ATGTCGGTATGTTTTTTTGTTTTTTCAATTAACGTTCTTACTTGTTCATGTTTGTTTGTTCATTGTTGTGTGTGATTTTTATGTGTTCCTATATATGGATCTAGTTATTATTATTGTATTCTATATATGTCATGATTTTCTTGCTGAGAAATTGTTCTTCAAATACATACATACATGCAATATGTTTTTACATGTCATTCATTTTGTGACATATATATTTCTCATATTTTATCCTCCGTACGTGTAGACCATTCAATCTATGATTTGTAATAAAGTAATATAAATATGGTGATCCCTAATAAGGTTGATGGGAGGGTAATATTGGTGCATGAAAATACATCAATGGTTCCATCAAATCACAAATTGATGAATATCAGGGCCACTGTGTTTGTAATTGTAGTGCATCAGAGTGCACATTACATTACTACCTTGATTAAAATATGAACTTCTATTCATCATCTCTTAAAAAATGACAAAACAGAAATAACTTATTTTAGCATTTTATTATTATATGCAGGTTCCAGTGGACCATAAAGATCAAGGGGTTGGAGCTGTTCCCCAATCTACAATTACACCAAATTGGACAATTAATGTCTCAGATGTAAGAAATAAATTCTTACATAATAGTATTGATTATTTTTTATTGTAAAATAAAATATATGAATTTGGAACCAATATCATGTTTTCACTCTAGATGCCTGGACACTGCAATATAAATATGCATGCCTGCTACAACATAATCAGAAAACTAGTAATTAAACAAGTATACGTTTAATAATATTTTATTATAGATTATAATAAATCCATAAATGCATAGTGGATTCAAATTGGGTCAAAGCTAACTAATTTGAGTTTCATTTGACAAACTGTGTTTGCTGATTTTAACTGCTTTTGGTTAATCCTTCAAAACAAATATTATATCTGCCTTATTGTCATGTGTTGGTATTTGTCTGATAACAAATTATTCAGAAGTTTATCTAATTTCAGTTATCTCTTGATGAAGAAAACCTAAGTTGATTCATTTTTACCTCTGGCAGATAAAAACGGTTAAGGTAAGCAATGTATCAATGACTGCGACCGAGAAGGATATCAAAGAGTTTTTCTCATTCTCTGGTGACATTCAATACGTTGAGATGCAAAAGTTAGATTCCTCGCAATGCAATCCTTTTTTTCCTTCCATCTTAATGAGTGTCATTGCTTAAAGTATTTGTGAAATTTTCACAATTCACTTACATGGATTTTTTTGCAGGGAAACTGAAAGCACTAAGACTGCATATGTTACCTTTAAGAATACACAGGGAGCAGACACAGCGGTGCTCTTGACGGTATGGTTTTGTATTTAGAATCTTACAAGACATTTTCAAACACCATTGATAAATAGAATATATAAAAGAAAGATAATTTTAGTCAGATTATTATTATTATTATTGGATAAAATCACATACTCATGCTTCTCTTTATAGTACAGGGTTCCAACATAGCAAATTCTCCTGTCACCATCACGCCATTTGAAAATTATCAGCTTCCCCCTGAAGCTCAACCATTTAGCCCTGTAAGCACCTAAGTTAGTTTTTATCTGTTCATTGTGCCTATAATACCAGTATCGAATTATCTTAGCAGTAAAAGTGTGGTTTTTTGTGTATGACTCATTTATTTAGCAGGTTTTGAAACATTGCTTCACAATTGCCGATAAATTTATAAGATGTATAATAGATTTTTCATGTTAGAAACACACACTTGCAGCTTAATAGTCAATGCATACATCTTGCAGTGTTTCTTTCGTATCAAATATTTATATCAATATTTCTAACCTTTGATGTTGATCTCAGGACCAAAAGCAGACTCCTGCTGCTGTTAAGAAGGCTGAAGATGTTGTGAGCACCATGCTTGCCAAAGGTTTTGTTTTAGGAAAAGGTGCAATTAATAGAGCCAAATCCTTTGACGAACGCCATCACTTGATTTCAAATGCTTCTGCCACAGTTGCTTCCATCGACCGTAAAATCGGTTTGACTGATAAACTAAGTATTGGAACTGCTATAGTAAATGAAAAAGTGAGAGAGATGGATGAAAAATTTCAGGTTTCTGAAAAAACAAAGTCTGTTTATGCTGTTGCTGAGCAAAAGGCAAGTGATGCTGGATCTGCAATCATGAGCAATCCTTATGTATCAACCGGAGCTTCGTGGGTGTCGAGCGCAATTACTGTTGTTGCAAAAGCAGCTGAAGATGTAACCACAATGACCATGGAGAAGGTCGAAATGGCCGAGGTTGATAAGAAAGAGATCATTTACAGTGAAAGGAAAGATGCAGTTGAAGAATTGTCACTTATACACTCTGAGAAACCTTCAGTTGGAAGTACTTCTCCAAAAGATCCTGTTAAATCAGGTGATGATAGTAGGTTTGGGATTATATGA
Protein sequence

>MS.gene62658.t1

MSVPVDHKDQGVGAVPQSTITPNWTINVSDIKTVKVSNVSMTATEKDIKEFFSFSGDIQYVEMQKETESTKTAYVTFKNTQGADTAVLLTGSNIANSPVTITPFENYQLPPEAQPFSPDQKQTPAAVKKAEDVVSTMLAKGFVLGKGAINRAKSFDERHHLISNASATVASIDRKIGLTDKLSIGTAIVNEKVREMDEKFQVSEKTKSVYAVAEQKASDAGSAIMSNPYVSTGASWVSSAITVVAKAAEDVTTMTMEKVEMAEVDKKEIIYSERKDAVEELSLIHSEKPSVGSTSPKDPVKSGDDSRFGII