Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62740.t1 | XP_003626672.2 | 95.5 | 356 | 6 | 1 | 1 | 346 | 54 | 409 | 4.00E-202 | 713.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62740.t1 | Q9LZV3 | 73.0 | 352 | 85 | 1 | 5 | 346 | 42 | 393 | 1.2e-159 | 563.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62740.t1 | G7LAQ6 | 95.5 | 356 | 6 | 1 | 1 | 346 | 54 | 409 | 2.9e-202 | 713.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051646 | MS.gene62740 | 0.802781 | 4.77E-49 | -1.69E-46 |
| MS.gene055566 | MS.gene62740 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene058158 | MS.gene62740 | 0.819121 | 1.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGAGCATATGAATT+TGG | 0.114525 | 8.4:+81361690 | None:intergenic |
| GACCAACCTTTCTATGTAAA+TGG | 0.163607 | 8.4:-81362677 | MS.gene62740:CDS |
| TAAATGGATTCAACACTTAC+TGG | 0.284522 | 8.4:-81362661 | MS.gene62740:CDS |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 8.4:-81362077 | MS.gene62740:intron |
| GTTGGTCATTCACTGCAAAT+TGG | 0.331406 | 8.4:+81362693 | None:intergenic |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 8.4:-81362424 | MS.gene62740:CDS |
| ATCAGAAACCACCAGGTTCT+AGG | 0.336789 | 8.4:-81361654 | MS.gene62740:CDS |
| CCCAAATTCATATGCTCAAC+AGG | 0.348303 | 8.4:-81361691 | MS.gene62740:CDS |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 8.4:-81362155 | MS.gene62740:CDS |
| TTGAATCCATTTACATAGAA+AGG | 0.367924 | 8.4:+81362671 | None:intergenic |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 8.4:-81362423 | MS.gene62740:CDS |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 8.4:-81362565 | MS.gene62740:CDS |
| AAGACTTCACAAATGGGATA+TGG | 0.386757 | 8.4:+81361451 | None:intergenic |
| ATTCAACACTTACTGGTTGA+TGG | 0.393983 | 8.4:-81362654 | MS.gene62740:CDS |
| CTACTGGAGATTGGCCTAGA+AGG | 0.395563 | 8.4:-81361753 | MS.gene62740:CDS |
| CAGTTGGTATGACAGTTTGT+AGG | 0.408046 | 8.4:-81362571 | MS.gene62740:CDS |
| TTGTGGCAGTTCTTTCCTGA+TGG | 0.418500 | 8.4:-81361246 | MS.gene62740:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 8.4:-81362374 | MS.gene62740:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.423314 | 8.4:-81362435 | MS.gene62740:CDS |
| TCTCCATTGGCCATCATTGA+AGG | 0.427709 | 8.4:+81362541 | None:intergenic |
| TCCATCCAAGACTTCACAAA+TGG | 0.428524 | 8.4:+81361444 | None:intergenic |
| CCAATCTCCAGTAGGTGTTT+CGG | 0.433449 | 8.4:+81361762 | None:intergenic |
| AGGGGCCATAAAATCCTTCT+AGG | 0.439788 | 8.4:+81361739 | None:intergenic |
| AAGGAACCTTACCAAGAGTC+TGG | 0.441773 | 8.4:+81361603 | None:intergenic |
| ATTTCTGAAGGGCTCTCCAT+TGG | 0.442818 | 8.4:+81362528 | None:intergenic |
| GAGGATGCTGAAAAGTATCT+TGG | 0.444822 | 8.4:-81361411 | MS.gene62740:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.449801 | 8.4:-81362495 | MS.gene62740:intron |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 8.4:-81362413 | MS.gene62740:CDS |
| CCTGTTGAGCATATGAATTT+GGG | 0.458492 | 8.4:+81361691 | None:intergenic |
| CCGAAACACCTACTGGAGAT+TGG | 0.462360 | 8.4:-81361762 | MS.gene62740:CDS |
| TGAAATCTCTGAGGTGTTGA+GGG | 0.462829 | 8.4:+81361720 | None:intergenic |
| ATATCCCATTTGTGAAGTCT+TGG | 0.463092 | 8.4:-81361449 | MS.gene62740:CDS |
| AGGACTTGGGCCTTCAATGA+TGG | 0.484180 | 8.4:-81362551 | MS.gene62740:CDS |
| ATCCATTTACATAGAAAGGT+TGG | 0.484246 | 8.4:+81362675 | None:intergenic |
| ATTCTAAACTCTACAAAGAA+AGG | 0.486329 | 8.4:-81361291 | MS.gene62740:CDS |
| TCCATGTAATCTGTTCCATC+AGG | 0.489401 | 8.4:+81361231 | None:intergenic |
| CGTTGATCCGAAACACCTAC+TGG | 0.492407 | 8.4:-81361769 | MS.gene62740:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 8.4:-81362091 | MS.gene62740:CDS |
| AAGAAAGGAGGTAGTGGGGC+TGG | 0.494489 | 8.4:-81361276 | MS.gene62740:CDS |
| GGTGTATCTGCAAAAGATCC+TGG | 0.494622 | 8.4:-81361363 | MS.gene62740:CDS |
| CTCATATATATCCAGACTCT+TGG | 0.494942 | 8.4:-81361614 | MS.gene62740:intron |
| CAGGAAAGAACTGCCACAAA+AGG | 0.501942 | 8.4:+81361250 | None:intergenic |
| CTATATGTTGAATTATAACC+AGG | 0.502559 | 8.4:+81361345 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 8.4:-81362564 | MS.gene62740:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 8.4:-81362719 | MS.gene62740:CDS |
| CCCATTTGTGAAGTCTTGGA+TGG | 0.515184 | 8.4:-81361445 | MS.gene62740:CDS |
| TTCAAACATGCATTCTCAGT+TGG | 0.518806 | 8.4:-81362587 | MS.gene62740:CDS |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 8.4:+81362314 | None:intergenic |
| TCCTGATGGAACAGATTACA+TGG | 0.528541 | 8.4:-81361232 | MS.gene62740:CDS |
| CTGAAATCTCTGAGGTGTTG+AGG | 0.529947 | 8.4:+81361719 | None:intergenic |
| CCATCCAAGACTTCACAAAT+GGG | 0.530333 | 8.4:+81361445 | None:intergenic |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 8.4:-81362388 | MS.gene62740:CDS |
| TCTACAAAGAAAGGAGGTAG+TGG | 0.533604 | 8.4:-81361282 | MS.gene62740:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 8.4:+81362351 | None:intergenic |
| CTACAAAGAAAGGAGGTAGT+GGG | 0.553421 | 8.4:-81361281 | MS.gene62740:CDS |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 8.4:+81362516 | None:intergenic |
| CGGACGAGTCGACAAGAGGA+AGG | 0.559006 | 8.4:-81362622 | MS.gene62740:CDS |
| CAAAGTCGACACCTAGAACC+TGG | 0.561106 | 8.4:+81361643 | None:intergenic |
| AATTCATATGCTCAACAGGT+TGG | 0.561704 | 8.4:-81361687 | MS.gene62740:CDS |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 8.4:-81362387 | MS.gene62740:CDS |
| TTAGGAATGGATAAAAGAGA+TGG | 0.562372 | 8.4:-81361808 | MS.gene62740:intron |
| GTGAAATGGAGGAAGCTGAA+TGG | 0.564983 | 8.4:-81362739 | MS.gene62740:CDS |
| TGGTTTAAGGAGTGAAATGG+AGG | 0.578038 | 8.4:-81362750 | None:intergenic |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 8.4:-81362420 | MS.gene62740:CDS |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 8.4:-81362312 | MS.gene62740:CDS |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 8.4:-81362612 | MS.gene62740:CDS |
| GCTGCGGACGAGTCGACAAG+AGG | 0.586696 | 8.4:-81362626 | MS.gene62740:CDS |
| CTTCTAGGCCAATCTCCAGT+AGG | 0.593952 | 8.4:+81361754 | None:intergenic |
| GGGCCTTCAATGATGGCCAA+TGG | 0.595028 | 8.4:-81362544 | MS.gene62740:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 8.4:+81362084 | None:intergenic |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 8.4:-81362323 | MS.gene62740:CDS |
| CTGGTTGATGGTATTTGCTG+CGG | 0.606752 | 8.4:-81362642 | MS.gene62740:CDS |
| GGAACAGATTACATGGATGA+TGG | 0.606894 | 8.4:-81361225 | None:intergenic |
| CTAAACTCTACAAAGAAAGG+AGG | 0.610072 | 8.4:-81361288 | MS.gene62740:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 8.4:+81362503 | None:intergenic |
| TGAAAAGTATCTTGGAATGC+CGG | 0.623758 | 8.4:-81361403 | MS.gene62740:CDS |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 8.4:-81362410 | MS.gene62740:CDS |
| TTGGATGGAAGCCCACATAG+AGG | 0.626696 | 8.4:-81361430 | MS.gene62740:CDS |
| GGACGAGTCGACAAGAGGAA+GGG | 0.630959 | 8.4:-81362621 | MS.gene62740:CDS |
| GAAATCTCTGAGGTGTTGAG+GGG | 0.645814 | 8.4:+81361721 | None:intergenic |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 8.4:+81362517 | None:intergenic |
| TACAAAGAAAGGAGGTAGTG+GGG | 0.655170 | 8.4:-81361280 | MS.gene62740:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 8.4:-81362300 | MS.gene62740:intron |
| GGAGGAAGCTGAATGGCAGA+TGG | 0.662800 | 8.4:-81362732 | MS.gene62740:CDS |
| GCTAGGAACTTACCTTGACA+TGG | 0.669271 | 8.4:+81362288 | None:intergenic |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 8.4:-81362386 | MS.gene62740:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 8.4:+81362075 | None:intergenic |
| GGGTTGAACTGAAATCTCTG+AGG | 0.711750 | 8.4:+81361711 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 8.4:+81362094 | None:intergenic |
| AGTCGACACCTAGAACCTGG+TGG | 0.780190 | 8.4:+81361646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGAAATTTTTATTAATAAAT+TGG | + | chr8.4:81362015-81362034 | None:intergenic | 10.0% |
| !! | TTAGATGTTTAAAGAAATAA+TGG | + | chr8.4:81362449-81362468 | None:intergenic | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | + | chr8.4:81361732-81361751 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | - | chr8.4:81361732-81361751 | MS.gene62740:CDS | 15.0% |
| !! | AATATATTCAATTGAGTTCA+AGG | + | chr8.4:81362137-81362156 | None:intergenic | 20.0% |
| !! | ATGGAAAAAAATTAGAAAAG+AGG | + | chr8.4:81362037-81362056 | None:intergenic | 20.0% |
| !! | ATGTTTAAAGAAATAATGGT+TGG | + | chr8.4:81362445-81362464 | None:intergenic | 20.0% |
| !! | CTCAATTGAATATATTCTTT+AGG | - | chr8.4:81362141-81362160 | MS.gene62740:CDS | 20.0% |
| !! | GCAATATTATTATTGTGTTT+GGG | + | chr8.4:81362075-81362094 | None:intergenic | 20.0% |
| !! | TGCAATATTATTATTGTGTT+TGG | + | chr8.4:81362076-81362095 | None:intergenic | 20.0% |
| !! | TGGAAAAAAATTAGAAAAGA+GGG | + | chr8.4:81362036-81362055 | None:intergenic | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | - | chr8.4:81361544-81361563 | MS.gene62740:intron | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | - | chr8.4:81361543-81361562 | MS.gene62740:intron | 20.0% |
| !!! | TTGAATATATTCTTTAGGAA+TGG | - | chr8.4:81362146-81362165 | MS.gene62740:CDS | 20.0% |
| ! | AATCAGACTCATATTATCAT+TGG | - | chr8.4:81361532-81361551 | MS.gene62740:intron | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | - | chr8.4:81361812-81361831 | MS.gene62740:intron | 25.0% |
| ! | ATTCTAAACTCTACAAAGAA+AGG | - | chr8.4:81362676-81362695 | MS.gene62740:CDS | 25.0% |
| ! | CTATATGTTGAATTATAACC+AGG | + | chr8.4:81362625-81362644 | None:intergenic | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | + | chr8.4:81361760-81361779 | None:intergenic | 25.0% |
| ! | TAATAAATTGGCGCTAAAAA+GGG | + | chr8.4:81362003-81362022 | None:intergenic | 25.0% |
| ! | TCTTTAAACATCTAACATTC+AGG | - | chr8.4:81362454-81362473 | MS.gene62740:intron | 25.0% |
| ! | TTAATAAATTGGCGCTAAAA+AGG | + | chr8.4:81362004-81362023 | None:intergenic | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | - | chr8.4:81361472-81361491 | MS.gene62740:CDS | 25.0% |
| ! | TTGAATCCATTTACATAGAA+AGG | + | chr8.4:81361299-81361318 | None:intergenic | 25.0% |
| ! | TTGTTTCAAAGAGTTCAAAT+TGG | + | chr8.4:81361965-81361984 | None:intergenic | 25.0% |
| !!! | TGGGTTTCTTTTTGAAAATA+TGG | + | chr8.4:81362056-81362075 | None:intergenic | 25.0% |
| AATAAATTGGCGCTAAAAAG+GGG | + | chr8.4:81362002-81362021 | None:intergenic | 30.0% | |
| ACTACTTCATCATAAAGTGA+TGG | + | chr8.4:81361467-81361486 | None:intergenic | 30.0% | |
| ATCCATTTACATAGAAAGGT+TGG | + | chr8.4:81361295-81361314 | None:intergenic | 30.0% | |
| TATTCAATTGAGTTCAAGGA+AGG | + | chr8.4:81362133-81362152 | None:intergenic | 30.0% | |
| TTAGGAATGGATAAAAGAGA+TGG | - | chr8.4:81362159-81362178 | MS.gene62740:CDS | 30.0% | |
| ! | AAGATCCAACAATTTTTGCT+TGG | - | chr8.4:81361835-81361854 | MS.gene62740:intron | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | - | chr8.4:81361836-81361855 | MS.gene62740:intron | 30.0% |
| ! | TAAATGGATTCAACACTTAC+TGG | - | chr8.4:81361306-81361325 | MS.gene62740:CDS | 30.0% |
| !!! | AACAGGAAGCATTAAGTTTT+AGG | + | chr8.4:81361715-81361734 | None:intergenic | 30.0% |
| AAGACTTCACAAATGGGATA+TGG | + | chr8.4:81362519-81362538 | None:intergenic | 35.0% | |
| AATTCATATGCTCAACAGGT+TGG | - | chr8.4:81362280-81362299 | MS.gene62740:intron | 35.0% | |
| ACCTGTTGAGCATATGAATT+TGG | + | chr8.4:81362280-81362299 | None:intergenic | 35.0% | |
| ATAAATTGGCGCTAAAAAGG+GGG | + | chr8.4:81362001-81362020 | None:intergenic | 35.0% | |
| ATATATCCAGACTCTTGGTA+AGG | - | chr8.4:81362358-81362377 | MS.gene62740:CDS | 35.0% | |
| ATATCCCATTTGTGAAGTCT+TGG | - | chr8.4:81362518-81362537 | MS.gene62740:CDS | 35.0% | |
| CCTGTTGAGCATATGAATTT+GGG | + | chr8.4:81362279-81362298 | None:intergenic | 35.0% | |
| CTAAACTCTACAAAGAAAGG+AGG | - | chr8.4:81362679-81362698 | MS.gene62740:CDS | 35.0% | |
| CTCATATATATCCAGACTCT+TGG | - | chr8.4:81362353-81362372 | MS.gene62740:CDS | 35.0% | |
| GACCAACCTTTCTATGTAAA+TGG | - | chr8.4:81361290-81361309 | MS.gene62740:CDS | 35.0% | |
| GATTGTGAAATCCTTCAACA+AGG | + | chr8.4:81362484-81362503 | None:intergenic | 35.0% | |
| TACTTAAGTAGAAGCCATCA+AGG | + | chr8.4:81362390-81362409 | None:intergenic | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | - | chr8.4:81361403-81361422 | MS.gene62740:CDS | 35.0% | |
| TGAGAAAAAGTCATCATCAG+AGG | + | chr8.4:81361630-81361649 | None:intergenic | 35.0% | |
| TTCAAACATGCATTCTCAGT+TGG | - | chr8.4:81361380-81361399 | MS.gene62740:CDS | 35.0% | |
| ! | AAAGTGATGGTGATTTCTGA+AGG | + | chr8.4:81361454-81361473 | None:intergenic | 35.0% |
| ! | AAGTGATGGTGATTTCTGAA+GGG | + | chr8.4:81361453-81361472 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | - | chr8.4:81361547-81361566 | MS.gene62740:intron | 35.0% |
| ! | ATTCAACACTTACTGGTTGA+TGG | - | chr8.4:81361313-81361332 | MS.gene62740:CDS | 35.0% |
| ! | TGATTTTATCAGAAACCACC+AGG | - | chr8.4:81362306-81362325 | MS.gene62740:CDS | 35.0% |
| !! | ATTGGCCTAGAAGGATTTTA+TGG | - | chr8.4:81362223-81362242 | MS.gene62740:intron | 35.0% |
| !! | TGAAAAGTATCTTGGAATGC+CGG | - | chr8.4:81362564-81362583 | MS.gene62740:CDS | 35.0% |
| !! | TTTTAGGTACATCTCAAGCT+AGG | + | chr8.4:81361699-81361718 | None:intergenic | 35.0% |
| AAAGCACAGTATGTCAAGTG+GGG | - | chr8.4:81361581-81361600 | MS.gene62740:intron | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | + | chr8.4:81361843-81361862 | None:intergenic | 40.0% | |
| ATTCAGGCTTACCTTGTTGA+AGG | - | chr8.4:81362470-81362489 | MS.gene62740:intron | 40.0% | |
| CAAAGCACAGTATGTCAAGT+GGG | - | chr8.4:81361580-81361599 | MS.gene62740:intron | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | + | chr8.4:81361619-81361638 | None:intergenic | 40.0% | |
| CCAAACTCACCAAAAACAAC+CGG | + | chr8.4:81362586-81362605 | None:intergenic | 40.0% | |
| CCATCCAAGACTTCACAAAT+GGG | + | chr8.4:81362525-81362544 | None:intergenic | 40.0% | |
| CCCAAATTCATATGCTCAAC+AGG | - | chr8.4:81362276-81362295 | MS.gene62740:intron | 40.0% | |
| CTACAAAGAAAGGAGGTAGT+GGG | - | chr8.4:81362686-81362705 | MS.gene62740:CDS | 40.0% | |
| GGAACAGATTACATGGATGA+TGG | - | chr8.4:81362742-81362761 | MS.gene62740:CDS | 40.0% | |
| GTATGACAGTTTGTAGGACT+TGG | - | chr8.4:81361402-81361421 | MS.gene62740:CDS | 40.0% | |
| GTTGGTCATTCACTGCAAAT+TGG | + | chr8.4:81361277-81361296 | None:intergenic | 40.0% | |
| TAAGTAGAAGCCATCAAGGA+AGG | + | chr8.4:81362386-81362405 | None:intergenic | 40.0% | |
| TACAAAGAAAGGAGGTAGTG+GGG | - | chr8.4:81362687-81362706 | MS.gene62740:CDS | 40.0% | |
| TCCATCCAAGACTTCACAAA+TGG | + | chr8.4:81362526-81362545 | None:intergenic | 40.0% | |
| TCCATGTAATCTGTTCCATC+AGG | + | chr8.4:81362739-81362758 | None:intergenic | 40.0% | |
| TCCTGATGGAACAGATTACA+TGG | - | chr8.4:81362735-81362754 | MS.gene62740:CDS | 40.0% | |
| TCTACAAAGAAAGGAGGTAG+TGG | - | chr8.4:81362685-81362704 | MS.gene62740:CDS | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | + | chr8.4:81361498-81361517 | None:intergenic | 40.0% | |
| ! | ACTTTTCAGCATCCTCTATG+TGG | + | chr8.4:81362552-81362571 | None:intergenic | 40.0% |
| ! | CAGTTGGTATGACAGTTTGT+AGG | - | chr8.4:81361396-81361415 | MS.gene62740:CDS | 40.0% |
| ! | CTTTTCAGCATCCTCTATGT+GGG | + | chr8.4:81362551-81362570 | None:intergenic | 40.0% |
| ! | GTTAACAATTGGGAGGCATA+TGG | - | chr8.4:81361554-81361573 | MS.gene62740:intron | 40.0% |
| !! | GAGGATGCTGAAAAGTATCT+TGG | - | chr8.4:81362556-81362575 | MS.gene62740:CDS | 40.0% |
| !! | TGAAATCTCTGAGGTGTTGA+GGG | + | chr8.4:81362250-81362269 | None:intergenic | 40.0% |
| AACTCTCAGAGGCTACTACA+AGG | - | chr8.4:81361655-81361674 | MS.gene62740:CDS | 45.0% | |
| AAGGAACCTTACCAAGAGTC+TGG | + | chr8.4:81362367-81362386 | None:intergenic | 45.0% | |
| AGGGGCCATAAAATCCTTCT+AGG | + | chr8.4:81362231-81362250 | None:intergenic | 45.0% | |
| ATCAGAAACCACCAGGTTCT+AGG | - | chr8.4:81362313-81362332 | MS.gene62740:CDS | 45.0% | |
| CAGGAAAGAACTGCCACAAA+AGG | + | chr8.4:81362720-81362739 | None:intergenic | 45.0% | |
| CCAATCTCCAGTAGGTGTTT+CGG | + | chr8.4:81362208-81362227 | None:intergenic | 45.0% | |
| CCCATTTGTGAAGTCTTGGA+TGG | - | chr8.4:81362522-81362541 | MS.gene62740:CDS | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | - | chr8.4:81361667-81361686 | MS.gene62740:CDS | 45.0% | |
| CTTCACTCACCACAAAATCC+AGG | + | chr8.4:81361499-81361518 | None:intergenic | 45.0% | |
| GCAAAGCACAGTATGTCAAG+TGG | - | chr8.4:81361579-81361598 | MS.gene62740:intron | 45.0% | |
| GCTAGGAACTTACCTTGACA+TGG | + | chr8.4:81361682-81361701 | None:intergenic | 45.0% | |
| GGGTTGAACTGAAATCTCTG+AGG | + | chr8.4:81362259-81362278 | None:intergenic | 45.0% | |
| GGTGTATCTGCAAAAGATCC+TGG | - | chr8.4:81362604-81362623 | MS.gene62740:CDS | 45.0% | |
| GTGAAATGGAGGAAGCTGAA+TGG | - | chr8.4:81361228-81361247 | MS.gene62740:CDS | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | + | chr8.4:81361895-81361914 | None:intergenic | 45.0% | |
| TCTCCATTGGCCATCATTGA+AGG | + | chr8.4:81361429-81361448 | None:intergenic | 45.0% | |
| TGAAGTAGTATTCAAGGCCC+TGG | - | chr8.4:81361478-81361497 | MS.gene62740:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | - | chr8.4:81361248-81361267 | MS.gene62740:CDS | 45.0% | |
| TGGTAAGGTTCCTTCCTTGA+TGG | - | chr8.4:81362373-81362392 | MS.gene62740:CDS | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | - | chr8.4:81361644-81361663 | MS.gene62740:CDS | 45.0% | |
| TTGTGGCAGTTCTTTCCTGA+TGG | - | chr8.4:81362721-81362740 | MS.gene62740:CDS | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | - | chr8.4:81361557-81361576 | MS.gene62740:intron | 45.0% |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | - | chr8.4:81361487-81361506 | MS.gene62740:intron | 45.0% |
| ! | ATTTCTGAAGGGCTCTCCAT+TGG | + | chr8.4:81361442-81361461 | None:intergenic | 45.0% |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | + | chr8.4:81361656-81361675 | None:intergenic | 45.0% |
| !! | CTGAAATCTCTGAGGTGTTG+AGG | + | chr8.4:81362251-81362270 | None:intergenic | 45.0% |
| !! | CTGGTTGATGGTATTTGCTG+CGG | - | chr8.4:81361325-81361344 | MS.gene62740:CDS | 45.0% |
| !! | CTTGGAATGCCGGTTGTTTT+TGG | - | chr8.4:81362574-81362593 | MS.gene62740:CDS | 45.0% |
| !! | GAAATCTCTGAGGTGTTGAG+GGG | + | chr8.4:81362249-81362268 | None:intergenic | 45.0% |
| !!! | CCGGTTGTTTTTGGTGAGTT+TGG | - | chr8.4:81362583-81362602 | MS.gene62740:CDS | 45.0% |
| AGGACTTGGGCCTTCAATGA+TGG | - | chr8.4:81361416-81361435 | MS.gene62740:CDS | 50.0% | |
| CAAAGTCGACACCTAGAACC+TGG | + | chr8.4:81362327-81362346 | None:intergenic | 50.0% | |
| CCGAAACACCTACTGGAGAT+TGG | - | chr8.4:81362205-81362224 | MS.gene62740:intron | 50.0% | |
| CGTTGATCCGAAACACCTAC+TGG | - | chr8.4:81362198-81362217 | MS.gene62740:intron | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | - | chr8.4:81361890-81361909 | MS.gene62740:intron | 50.0% | |
| CTTCTAGGCCAATCTCCAGT+AGG | + | chr8.4:81362216-81362235 | None:intergenic | 50.0% | |
| TTGGATGGAAGCCCACATAG+AGG | - | chr8.4:81362537-81362556 | MS.gene62740:CDS | 50.0% | |
| !! | CTACTGGAGATTGGCCTAGA+AGG | - | chr8.4:81362214-81362233 | MS.gene62740:intron | 50.0% |
| AGTCGACACCTAGAACCTGG+TGG | + | chr8.4:81362324-81362343 | None:intergenic | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | + | chr8.4:81361886-81361905 | None:intergenic | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | - | chr8.4:81361355-81361374 | MS.gene62740:CDS | 55.0% | |
| GGACGAGTCGACAAGAGGAA+GGG | - | chr8.4:81361346-81361365 | MS.gene62740:CDS | 55.0% | |
| GGAGGAAGCTGAATGGCAGA+TGG | - | chr8.4:81361235-81361254 | MS.gene62740:CDS | 55.0% | |
| GGGCCTTCAATGATGGCCAA+TGG | - | chr8.4:81361423-81361442 | MS.gene62740:CDS | 55.0% | |
| !! | AAGAAAGGAGGTAGTGGGGC+TGG | - | chr8.4:81362691-81362710 | MS.gene62740:CDS | 55.0% |
| CGATGCACCTCTGACTCCTC+TGG | - | chr8.4:81361876-81361895 | MS.gene62740:intron | 60.0% | |
| CGGACGAGTCGACAAGAGGA+AGG | - | chr8.4:81361345-81361364 | MS.gene62740:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | - | chr8.4:81361593-81361612 | MS.gene62740:intron | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | + | chr8.4:81361876-81361895 | None:intergenic | 60.0% |
| ! | GTGGGGCTGGAAGCCTTTTG+TGG | - | chr8.4:81362704-81362723 | MS.gene62740:CDS | 60.0% |
| GCTGCGGACGAGTCGACAAG+AGG | - | chr8.4:81361341-81361360 | MS.gene62740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 81361226 | 81362763 | 81361226 | ID=MS.gene62740 |
| chr8.4 | mRNA | 81361226 | 81362763 | 81361226 | ID=MS.gene62740.t1;Parent=MS.gene62740 |
| chr8.4 | exon | 81362496 | 81362763 | 81362496 | ID=MS.gene62740.t1.exon1;Parent=MS.gene62740.t1 |
| chr8.4 | CDS | 81362496 | 81362763 | 81362496 | ID=cds.MS.gene62740.t1;Parent=MS.gene62740.t1 |
| chr8.4 | exon | 81362301 | 81362465 | 81362301 | ID=MS.gene62740.t1.exon2;Parent=MS.gene62740.t1 |
| chr8.4 | CDS | 81362301 | 81362465 | 81362301 | ID=cds.MS.gene62740.t1;Parent=MS.gene62740.t1 |
| chr8.4 | exon | 81362078 | 81362200 | 81362078 | ID=MS.gene62740.t1.exon3;Parent=MS.gene62740.t1 |
| chr8.4 | CDS | 81362078 | 81362200 | 81362078 | ID=cds.MS.gene62740.t1;Parent=MS.gene62740.t1 |
| chr8.4 | exon | 81361615 | 81361826 | 81361615 | ID=MS.gene62740.t1.exon4;Parent=MS.gene62740.t1 |
| chr8.4 | CDS | 81361615 | 81361826 | 81361615 | ID=cds.MS.gene62740.t1;Parent=MS.gene62740.t1 |
| chr8.4 | exon | 81361226 | 81361497 | 81361226 | ID=MS.gene62740.t1.exon5;Parent=MS.gene62740.t1 |
| chr8.4 | CDS | 81361226 | 81361497 | 81361226 | ID=cds.MS.gene62740.t1;Parent=MS.gene62740.t1 |
| Gene Sequence |
| Protein sequence |
