Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63297.t1 | XP_013460724.1 | 96.3 | 189 | 4 | 1 | 1 | 186 | 1 | 189 | 9.20E-90 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63297.t1 | P49598 | 41.7 | 211 | 97 | 7 | 1 | 186 | 1 | 210 | 4.4e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63297.t1 | A0A072V045 | 96.3 | 189 | 4 | 1 | 1 | 186 | 1 | 189 | 6.6e-90 | 339.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050987 | MS.gene63297 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene63297 | 0.80678 | 6.97E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene63297 | 0.819598 | 1.07E-52 | -1.69E-46 |
| MS.gene054537 | MS.gene63297 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene63297 | 0.831998 | 1.21E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene63297 | 0.80037 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63297.t1 | MTR_3g068200 | 94.180 | 189 | 8 | 1 | 1 | 186 | 1 | 189 | 3.45e-131 | 374 |
| MS.gene63297.t1 | MTR_5g080680 | 46.305 | 203 | 85 | 5 | 1 | 186 | 1 | 196 | 8.09e-49 | 160 |
| MS.gene63297.t1 | MTR_5g080680 | 46.305 | 203 | 85 | 5 | 1 | 186 | 1 | 196 | 5.47e-48 | 161 |
| MS.gene63297.t1 | MTR_4g125810 | 32.576 | 132 | 62 | 3 | 69 | 173 | 186 | 317 | 1.41e-17 | 80.5 |
| MS.gene63297.t1 | MTR_5g009370 | 36.719 | 128 | 72 | 4 | 76 | 194 | 39 | 166 | 1.75e-16 | 76.6 |
| MS.gene63297.t1 | MTR_8g102550 | 36.111 | 108 | 45 | 2 | 90 | 173 | 103 | 210 | 5.46e-16 | 75.9 |
| MS.gene63297.t1 | MTR_2g040500 | 26.582 | 158 | 73 | 3 | 73 | 203 | 204 | 345 | 1.35e-15 | 74.7 |
| MS.gene63297.t1 | MTR_3g104710 | 32.283 | 127 | 50 | 2 | 82 | 172 | 223 | 349 | 1.63e-15 | 74.7 |
| MS.gene63297.t1 | MTR_1g015110 | 33.333 | 123 | 49 | 3 | 82 | 172 | 232 | 353 | 5.96e-15 | 73.2 |
| MS.gene63297.t1 | MTR_1g028300 | 42.529 | 87 | 46 | 2 | 90 | 172 | 113 | 199 | 2.71e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63297.t1 | AT3G11410 | 42.654 | 211 | 95 | 8 | 1 | 186 | 1 | 210 | 1.43e-42 | 147 |
| MS.gene63297.t1 | AT2G29380 | 52.542 | 118 | 48 | 3 | 88 | 197 | 76 | 193 | 6.19e-36 | 129 |
| MS.gene63297.t1 | AT1G07430 | 51.695 | 118 | 48 | 3 | 76 | 186 | 107 | 222 | 1.36e-34 | 127 |
| MS.gene63297.t1 | AT5G59220 | 50.926 | 108 | 43 | 3 | 85 | 186 | 107 | 210 | 7.00e-30 | 112 |
| MS.gene63297.t1 | AT5G59220 | 50.926 | 108 | 43 | 3 | 85 | 186 | 107 | 210 | 3.99e-29 | 112 |
| MS.gene63297.t1 | AT5G57050 | 30.000 | 190 | 106 | 3 | 29 | 191 | 10 | 199 | 5.72e-19 | 84.0 |
| MS.gene63297.t1 | AT5G57050 | 32.692 | 156 | 78 | 3 | 63 | 191 | 84 | 239 | 6.25e-19 | 83.2 |
| MS.gene63297.t1 | AT4G26080 | 35.115 | 131 | 62 | 3 | 82 | 191 | 121 | 249 | 7.08e-19 | 84.3 |
| MS.gene63297.t1 | AT5G57050 | 32.692 | 156 | 78 | 3 | 63 | 191 | 84 | 239 | 1.19e-18 | 83.6 |
| MS.gene63297.t1 | AT5G51760 | 38.462 | 130 | 53 | 5 | 74 | 186 | 64 | 183 | 1.98e-17 | 79.7 |
| MS.gene63297.t1 | AT5G51760 | 38.462 | 130 | 53 | 5 | 74 | 186 | 94 | 213 | 2.58e-17 | 79.7 |
| MS.gene63297.t1 | AT1G17550 | 32.231 | 121 | 53 | 3 | 82 | 173 | 181 | 301 | 2.20e-14 | 71.2 |
| MS.gene63297.t1 | AT1G17550 | 32.231 | 121 | 53 | 3 | 82 | 173 | 181 | 301 | 2.20e-14 | 71.2 |
| MS.gene63297.t1 | AT1G72770 | 28.099 | 121 | 58 | 2 | 82 | 173 | 182 | 302 | 7.96e-11 | 60.8 |
| MS.gene63297.t1 | AT1G72770 | 28.099 | 121 | 58 | 2 | 82 | 173 | 182 | 302 | 7.96e-11 | 60.8 |
| MS.gene63297.t1 | AT1G72770 | 28.099 | 121 | 58 | 2 | 82 | 173 | 182 | 302 | 7.96e-11 | 60.8 |
| MS.gene63297.t1 | AT1G72770 | 28.099 | 121 | 58 | 2 | 82 | 173 | 182 | 302 | 9.34e-11 | 60.8 |
| MS.gene63297.t1 | AT1G72770 | 28.099 | 121 | 58 | 2 | 82 | 173 | 182 | 302 | 9.34e-11 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTCCCGGCGCCGGAATT+TGG | 0.164906 | 3.3:+60457444 | MS.gene63297:CDS |
| ACTGAAGTAACACCGAATTT+TGG | 0.230737 | 3.3:-60457649 | None:intergenic |
| TCGAAATTACCTTCCGTAGA+AGG | 0.328474 | 3.3:-60457613 | None:intergenic |
| CAGAAGCTGCCGTCGCTGCC+GGG | 0.350611 | 3.3:+60458531 | MS.gene63297:CDS |
| CCTTCTTAAGATCTGGTTGC+CGG | 0.378935 | 3.3:-60457522 | None:intergenic |
| TTGTGGTAGAAGAAGAGATA+TGG | 0.384132 | 3.3:+60457672 | MS.gene63297:CDS |
| ACAGAAGCTGCCGTCGCTGC+CGG | 0.399031 | 3.3:+60458530 | MS.gene63297:CDS |
| CCGGCGTTTACGAGAAGTTC+CGG | 0.400169 | 3.3:-60457503 | None:intergenic |
| CACATCTACATGTAACAGTT+TGG | 0.412786 | 3.3:-60458011 | None:intergenic |
| TCGAAATCCTTCTTAAGATC+TGG | 0.418009 | 3.3:-60457529 | None:intergenic |
| TCCGGTGTCCCCGGCAGCGA+CGG | 0.443630 | 3.3:-60458540 | None:intergenic |
| GTTGAAGAGTGTCCAAAATT+CGG | 0.449606 | 3.3:+60457637 | MS.gene63297:CDS |
| TTCGGTGTTACTTCAGTTTG+TGG | 0.455399 | 3.3:+60457655 | MS.gene63297:CDS |
| TCCAAATTCCGGCGCCGGGA+GGG | 0.471151 | 3.3:-60457445 | None:intergenic |
| GGTTCTTGTGAAGAGAAAGA+AGG | 0.475214 | 3.3:-60457715 | None:intergenic |
| GCAACAAGGCTTTGCTCGCA+TGG | 0.484219 | 3.3:+60457957 | MS.gene63297:CDS |
| GTTCACGTCCCTCCCGGCGC+CGG | 0.501266 | 3.3:+60457437 | MS.gene63297:CDS |
| ATGGTAGTAAGTCCAAATTC+CGG | 0.501602 | 3.3:-60457456 | None:intergenic |
| TACATCGCCGACATGGCGTC+CGG | 0.508772 | 3.3:+60457484 | MS.gene63297:CDS |
| GCCGTCGCTGCCGGGGACAC+CGG | 0.510962 | 3.3:+60458539 | MS.gene63297:CDS |
| AGAAGCTGCCGTCGCTGCCG+GGG | 0.515882 | 3.3:+60458532 | MS.gene63297:CDS |
| TAAGTCCAAATTCCGGCGCC+GGG | 0.526065 | 3.3:-60457449 | None:intergenic |
| GTAAGTCCAAATTCCGGCGC+CGG | 0.536382 | 3.3:-60457450 | None:intergenic |
| GGAATGTGTTGTGGTGTTGT+CGG | 0.536644 | 3.3:+60457394 | MS.gene63297:CDS |
| CGGCGAGTTCACGTCCCTCC+CGG | 0.540502 | 3.3:+60457431 | MS.gene63297:CDS |
| TGATAAAGAAAAGCCTTCTA+CGG | 0.540988 | 3.3:+60457600 | MS.gene63297:CDS |
| TGTTGTGGTGTTGTCGGAGA+AGG | 0.549714 | 3.3:+60457400 | MS.gene63297:CDS |
| TGGACGATGAAGTTCAAAGA+TGG | 0.557447 | 3.3:+60457977 | MS.gene63297:CDS |
| AAAGAAAAGCCTTCTACGGA+AGG | 0.558816 | 3.3:+60457604 | MS.gene63297:CDS |
| AAAACACCGAAGTAGTGAAA+AGG | 0.560512 | 3.3:-60457736 | None:intergenic |
| ATTATGGCTGGAATGTGTTG+TGG | 0.564647 | 3.3:+60457385 | None:intergenic |
| ATGTCGGCGATGTATTTGAA+TGG | 0.578204 | 3.3:-60457475 | None:intergenic |
| GAAAACGAGGTGACGACGGA+TGG | 0.579693 | 3.3:+60458561 | MS.gene63297:CDS |
| ATTCAAATACATCGCCGACA+TGG | 0.580427 | 3.3:+60457477 | MS.gene63297:CDS |
| CGGGAGGGACGTGAACTCGC+CGG | 0.591475 | 3.3:-60457430 | None:intergenic |
| GTCCAAATTCCGGCGCCGGG+AGG | 0.598614 | 3.3:-60457446 | None:intergenic |
| CCGGCAACCAGATCTTAAGA+AGG | 0.602537 | 3.3:+60457522 | MS.gene63297:CDS |
| TGTCGGAGAAGGTGACTCAC+CGG | 0.606589 | 3.3:+60457411 | MS.gene63297:CDS |
| GAGACTTCACGAAATTGTGA+AGG | 0.612907 | 3.3:+60457888 | MS.gene63297:CDS |
| ACCGGAAAACGAGGTGACGA+CGG | 0.614531 | 3.3:+60458557 | MS.gene63297:CDS |
| AGAAGTTCCGGACGCCATGT+CGG | 0.617679 | 3.3:-60457491 | None:intergenic |
| GCGAGCAAAGCCTTGTTGCA+TGG | 0.634973 | 3.3:-60457953 | None:intergenic |
| GCCGGGGACACCGGAAAACG+AGG | 0.642141 | 3.3:+60458548 | MS.gene63297:CDS |
| TGGAACAACACCATGCAACA+AGG | 0.659515 | 3.3:+60457943 | MS.gene63297:CDS |
| CCGGAACTTCTCGTAAACGC+CGG | 0.665427 | 3.3:+60457503 | MS.gene63297:CDS |
| AAGCTCAAGAGAATTTAGAG+TGG | 0.674587 | 3.3:+60457923 | MS.gene63297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTATTTTTCTTTTTTC+CGG | + | chr3.3:60457781-60457800 | MS.gene63297:intron | 20.0% |
| ! | CAAAAGTAAGAAAAACAAGA+AGG | + | chr3.3:60457576-60457595 | MS.gene63297:CDS | 25.0% |
| ! | TTTGATAAAATACTCACCTA+TGG | - | chr3.3:60458286-60458305 | None:intergenic | 25.0% |
| !!! | ATGTTTGTATTCTTTTTTGC+AGG | + | chr3.3:60458351-60458370 | MS.gene63297:intron | 25.0% |
| !!! | GCTTTGTTGTTAATTTTTTC+AGG | + | chr3.3:60457846-60457865 | MS.gene63297:intron | 25.0% |
| AAAATTATCGTCTCAAACTG+TGG | + | chr3.3:60458099-60458118 | MS.gene63297:intron | 30.0% | |
| TGATAAAGAAAAGCCTTCTA+CGG | + | chr3.3:60457600-60457619 | MS.gene63297:CDS | 30.0% | |
| ! | GACAGATCTGTTAAATTTTC+CGG | + | chr3.3:60457805-60457824 | MS.gene63297:intron | 30.0% |
| ! | GGTGAGTATTTTATCAAAGT+CGG | + | chr3.3:60458288-60458307 | MS.gene63297:intron | 30.0% |
| ! | TTAAATTTTCCGGTGAATTG+CGG | + | chr3.3:60457815-60457834 | MS.gene63297:intron | 30.0% |
| !! | TTTGAGACGATAATTTTGTC+TGG | - | chr3.3:60458096-60458115 | None:intergenic | 30.0% |
| AAAACACCGAAGTAGTGAAA+AGG | - | chr3.3:60457739-60457758 | None:intergenic | 35.0% | |
| AAATTTAACAGATCTGTCGC+CGG | - | chr3.3:60457803-60457822 | None:intergenic | 35.0% | |
| AAGCTCAAGAGAATTTAGAG+TGG | + | chr3.3:60457923-60457942 | MS.gene63297:CDS | 35.0% | |
| ATGGTAGTAAGTCCAAATTC+CGG | - | chr3.3:60457459-60457478 | None:intergenic | 35.0% | |
| CACATCTACATGTAACAGTT+TGG | - | chr3.3:60458014-60458033 | None:intergenic | 35.0% | |
| TCGAAATCCTTCTTAAGATC+TGG | - | chr3.3:60457532-60457551 | None:intergenic | 35.0% | |
| TGTTGTAAGGATGTGTTTGA+AGG | + | chr3.3:60458506-60458525 | MS.gene63297:intron | 35.0% | |
| TTGTGGTAGAAGAAGAGATA+TGG | + | chr3.3:60457672-60457691 | MS.gene63297:CDS | 35.0% | |
| ! | ACTGAAGTAACACCGAATTT+TGG | - | chr3.3:60457652-60457671 | None:intergenic | 35.0% |
| ! | CAAGAACCTTTTCACTACTT+CGG | + | chr3.3:60457730-60457749 | MS.gene63297:CDS | 35.0% |
| !! | AATTTTGTCTGGAGTGACAA+CGG | - | chr3.3:60458085-60458104 | None:intergenic | 35.0% |
| !! | GTTGAAGAGTGTCCAAAATT+CGG | + | chr3.3:60457637-60457656 | MS.gene63297:CDS | 35.0% |
| AAAGAAAAGCCTTCTACGGA+AGG | + | chr3.3:60457604-60457623 | MS.gene63297:CDS | 40.0% | |
| ATGTCGGCGATGTATTTGAA+TGG | - | chr3.3:60457478-60457497 | None:intergenic | 40.0% | |
| ATTCAAATACATCGCCGACA+TGG | + | chr3.3:60457477-60457496 | MS.gene63297:CDS | 40.0% | |
| CAATTAACACCGCAATTCAC+CGG | - | chr3.3:60457827-60457846 | None:intergenic | 40.0% | |
| GAGACTTCACGAAATTGTGA+AGG | + | chr3.3:60457888-60457907 | MS.gene63297:CDS | 40.0% | |
| GGTTCTTGTGAAGAGAAAGA+AGG | - | chr3.3:60457718-60457737 | None:intergenic | 40.0% | |
| GTTTCAAATGACACAGCTTG+TGG | + | chr3.3:60458483-60458502 | MS.gene63297:intron | 40.0% | |
| TCAGGCTCAGATATCACATA+AGG | - | chr3.3:60458393-60458412 | None:intergenic | 40.0% | |
| TCGAAATTACCTTCCGTAGA+AGG | - | chr3.3:60457616-60457635 | None:intergenic | 40.0% | |
| TGGACGATGAAGTTCAAAGA+TGG | + | chr3.3:60457977-60457996 | MS.gene63297:CDS | 40.0% | |
| TTATGTGATATCTGAGCCTG+AGG | + | chr3.3:60458392-60458411 | MS.gene63297:intron | 40.0% | |
| !! | TTCGGTGTTACTTCAGTTTG+TGG | + | chr3.3:60457655-60457674 | MS.gene63297:CDS | 40.0% |
| CCTTCTTAAGATCTGGTTGC+CGG | - | chr3.3:60457525-60457544 | None:intergenic | 45.0% | |
| GATATCTGAGCCTGAGGTAA+CGG | + | chr3.3:60458398-60458417 | MS.gene63297:intron | 45.0% | |
| TAGACATGGCAAGTACTCCA+AGG | - | chr3.3:60458260-60458279 | None:intergenic | 45.0% | |
| TCTTTCCTCCGATCATAAGC+CGG | + | chr3.3:60458164-60458183 | MS.gene63297:intron | 45.0% | |
| TGGAACAACACCATGCAACA+AGG | + | chr3.3:60457943-60457962 | MS.gene63297:CDS | 45.0% | |
| TGTTTGATCCTAGCGAGTGA+TGG | + | chr3.3:60458447-60458466 | MS.gene63297:intron | 45.0% | |
| !! | ACACAGCTTGTGGTGTTGTA+AGG | + | chr3.3:60458493-60458512 | MS.gene63297:intron | 45.0% |
| !! | GGAATGTGTTGTGGTGTTGT+CGG | + | chr3.3:60457394-60457413 | MS.gene63297:CDS | 45.0% |
| !! | TTCGACTCGGAGCAATTCAT+CGG | - | chr3.3:60458196-60458215 | None:intergenic | 45.0% |
| !!! | CACTACTTCGGTGTTTTCGA+CGG | + | chr3.3:60457742-60457761 | MS.gene63297:CDS | 45.0% |
| ACTCCTCACTGTGATGCTGT+TGG | + | chr3.3:60458042-60458061 | MS.gene63297:intron | 50.0% | |
| AGCAATTCATCGGGTCGATC+CGG | - | chr3.3:60458186-60458205 | None:intergenic | 50.0% | |
| CCGGCAACCAGATCTTAAGA+AGG | + | chr3.3:60457522-60457541 | MS.gene63297:CDS | 50.0% | |
| GATCCAACAGCATCACAGTG+AGG | - | chr3.3:60458048-60458067 | None:intergenic | 50.0% | |
| GCAAGTACTCCAAGGACTCT+TGG | - | chr3.3:60458252-60458271 | None:intergenic | 50.0% | |
| GGCTTATGATCGGAGGAAAG+AGG | - | chr3.3:60458165-60458184 | None:intergenic | 50.0% | |
| TGAATTGCTCCGAGTCGAAG+CGG | + | chr3.3:60458197-60458216 | MS.gene63297:intron | 50.0% | |
| ! | CTTGCCATGTCTAGAGCCAT+AGG | + | chr3.3:60458267-60458286 | MS.gene63297:intron | 50.0% |
| ! | TGAGCCTGAGGTAACGGTAA+CGG | + | chr3.3:60458404-60458423 | MS.gene63297:intron | 50.0% |
| !! | CCTAGCGAGTGATGGACTAT+GGG | + | chr3.3:60458455-60458474 | MS.gene63297:intron | 50.0% |
| !! | CTCACCTATGGCTCTAGACA+TGG | - | chr3.3:60458274-60458293 | None:intergenic | 50.0% |
| !! | TCCTAGCGAGTGATGGACTA+TGG | + | chr3.3:60458454-60458473 | MS.gene63297:intron | 50.0% |
| !! | TCGACTCGGAGCAATTCATC+GGG | - | chr3.3:60458195-60458214 | None:intergenic | 50.0% |
| !! | TGTTGTGGTGTTGTCGGAGA+AGG | + | chr3.3:60457400-60457419 | MS.gene63297:CDS | 50.0% |
| !!! | TTCGGTGTTTTCGACGGTCA+CGG | + | chr3.3:60457748-60457767 | MS.gene63297:CDS | 50.0% |
| AACGCCGCTACGGCAAAGAA+CGG | - | chr3.3:60458136-60458155 | None:intergenic | 55.0% | |
| ACCGGAAAACGAGGTGACGA+CGG | + | chr3.3:60458557-60458576 | MS.gene63297:CDS | 55.0% | |
| AGAAGTTCCGGACGCCATGT+CGG | - | chr3.3:60457494-60457513 | None:intergenic | 55.0% | |
| AGAGCCGTTCTTTGCCGTAG+CGG | + | chr3.3:60458129-60458148 | MS.gene63297:intron | 55.0% | |
| CCCATAGTCCATCACTCGCT+AGG | - | chr3.3:60458458-60458477 | None:intergenic | 55.0% | |
| CCGGAACTTCTCGTAAACGC+CGG | + | chr3.3:60457503-60457522 | MS.gene63297:CDS | 55.0% | |
| CCGGCGTTTACGAGAAGTTC+CGG | - | chr3.3:60457506-60457525 | None:intergenic | 55.0% | |
| CGTTCCGTTACCGTTACCTC+AGG | - | chr3.3:60458411-60458430 | None:intergenic | 55.0% | |
| GAAAACGAGGTGACGACGGA+TGG | + | chr3.3:60458561-60458580 | MS.gene63297:CDS | 55.0% | |
| GACAACGGCAACAACAGCTG+TGG | - | chr3.3:60458070-60458089 | None:intergenic | 55.0% | |
| GAGGAATAGCAACGCCGCTA+CGG | - | chr3.3:60458146-60458165 | None:intergenic | 55.0% | |
| GCAACAAGGCTTTGCTCGCA+TGG | + | chr3.3:60457957-60457976 | MS.gene63297:CDS | 55.0% | |
| GGGTCGATCCGGCTTATGAT+CGG | - | chr3.3:60458175-60458194 | None:intergenic | 55.0% | |
| GTAAGTCCAAATTCCGGCGC+CGG | - | chr3.3:60457453-60457472 | None:intergenic | 55.0% | |
| TAAGTCCAAATTCCGGCGCC+GGG | - | chr3.3:60457452-60457471 | None:intergenic | 55.0% | |
| TCGATCCGGCTTATGATCGG+AGG | - | chr3.3:60458172-60458191 | None:intergenic | 55.0% | |
| TGGGATGGTCCAAGAGTCCT+TGG | + | chr3.3:60458240-60458259 | MS.gene63297:intron | 55.0% | |
| TGTCGGAGAAGGTGACTCAC+CGG | + | chr3.3:60457411-60457430 | MS.gene63297:CDS | 55.0% | |
| ! | TCCGTCGTCACCTCGTTTTC+CGG | - | chr3.3:60458561-60458580 | None:intergenic | 55.0% |
| ! | TGGAGGGCGCGTGATCTATT+GGG | + | chr3.3:60458221-60458240 | MS.gene63297:intron | 55.0% |
| !! | GCGAGCAAAGCCTTGTTGCA+TGG | - | chr3.3:60457956-60457975 | None:intergenic | 55.0% |
| GGGCGCGTGATCTATTGGGA+TGG | + | chr3.3:60458225-60458244 | MS.gene63297:intron | 60.0% | |
| TACATCGCCGACATGGCGTC+CGG | + | chr3.3:60457484-60457503 | MS.gene63297:CDS | 60.0% | |
| ! | ACCTCGTTTTCCGGTGTCCC+CGG | - | chr3.3:60458552-60458571 | None:intergenic | 60.0% |
| ! | CTGGAGGGCGCGTGATCTAT+TGG | + | chr3.3:60458220-60458239 | MS.gene63297:intron | 60.0% |
| ACAGAAGCTGCCGTCGCTGC+CGG | + | chr3.3:60458530-60458549 | MS.gene63297:CDS | 65.0% | |
| TCCGAGTCGAAGCGGCTGGA+GGG | + | chr3.3:60458205-60458224 | MS.gene63297:intron | 65.0% | |
| TTGCTCCGAGTCGAAGCGGC+TGG | + | chr3.3:60458201-60458220 | MS.gene63297:intron | 65.0% | |
| ! | TCCAAATTCCGGCGCCGGGA+GGG | - | chr3.3:60457448-60457467 | None:intergenic | 65.0% |
| AGAAGCTGCCGTCGCTGCCG+GGG | + | chr3.3:60458532-60458551 | MS.gene63297:CDS | 70.0% | |
| CAGAAGCTGCCGTCGCTGCC+GGG | + | chr3.3:60458531-60458550 | MS.gene63297:CDS | 70.0% | |
| CGGCGAGTTCACGTCCCTCC+CGG | + | chr3.3:60457431-60457450 | MS.gene63297:CDS | 70.0% | |
| CGGGAGGGACGTGAACTCGC+CGG | - | chr3.3:60457433-60457452 | None:intergenic | 70.0% | |
| CTCCGAGTCGAAGCGGCTGG+AGG | + | chr3.3:60458204-60458223 | MS.gene63297:intron | 70.0% | |
| GCCCTCCAGCCGCTTCGACT+CGG | - | chr3.3:60458209-60458228 | None:intergenic | 70.0% | |
| GCCGGGGACACCGGAAAACG+AGG | + | chr3.3:60458548-60458567 | MS.gene63297:CDS | 70.0% | |
| ! | GTCCAAATTCCGGCGCCGGG+AGG | - | chr3.3:60457449-60457468 | None:intergenic | 70.0% |
| ! | TCCCTCCCGGCGCCGGAATT+TGG | + | chr3.3:60457444-60457463 | MS.gene63297:CDS | 70.0% |
| GTTCACGTCCCTCCCGGCGC+CGG | + | chr3.3:60457437-60457456 | MS.gene63297:CDS | 75.0% | |
| TCCGGTGTCCCCGGCAGCGA+CGG | - | chr3.3:60458543-60458562 | None:intergenic | 75.0% | |
| ! | GCCGTCGCTGCCGGGGACAC+CGG | + | chr3.3:60458539-60458558 | MS.gene63297:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 60457388 | 60458589 | 60457388 | ID=MS.gene63297 |
| chr3.3 | mRNA | 60457388 | 60458589 | 60457388 | ID=MS.gene63297.t1;Parent=MS.gene63297 |
| chr3.3 | exon | 60457388 | 60457780 | 60457388 | ID=MS.gene63297.t1.exon1;Parent=MS.gene63297.t1 |
| chr3.3 | CDS | 60457388 | 60457780 | 60457388 | ID=cds.MS.gene63297.t1;Parent=MS.gene63297.t1 |
| chr3.3 | exon | 60457868 | 60458030 | 60457868 | ID=MS.gene63297.t1.exon2;Parent=MS.gene63297.t1 |
| chr3.3 | CDS | 60457868 | 60458030 | 60457868 | ID=cds.MS.gene63297.t1;Parent=MS.gene63297.t1 |
| chr3.3 | exon | 60458528 | 60458589 | 60458528 | ID=MS.gene63297.t1.exon3;Parent=MS.gene63297.t1 |
| chr3.3 | CDS | 60458528 | 60458589 | 60458528 | ID=cds.MS.gene63297.t1;Parent=MS.gene63297.t1 |
| Gene Sequence |
| Protein sequence |
