AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63371

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63371.t1 MTR_2g075300 85.000 320 29 3 1 304 112 428 0.0 555
MS.gene63371.t1 MTR_2g084535 53.561 351 127 6 1 324 117 458 2.10e-128 377
MS.gene63371.t1 MTR_7g105390 40.793 353 162 9 1 312 109 455 6.18e-75 239
MS.gene63371.t1 MTR_7g105400 39.884 346 156 9 1 304 114 449 7.32e-73 234
MS.gene63371.t1 MTR_4g097590 37.500 360 161 9 5 304 117 472 3.71e-69 225
MS.gene63371.t1 MTR_7g105390 39.053 338 137 7 1 312 127 421 3.55e-60 200
MS.gene63371.t1 MTR_8g076210 29.630 324 172 11 5 290 73 378 9.68e-21 92.8
MS.gene63371.t1 MTR_5g021530 28.527 319 182 13 5 290 96 401 5.17e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63371.t1 AT5G22860 48.328 329 134 7 1 296 116 441 2.07e-94 288
MS.gene63371.t1 AT5G22860 48.318 327 133 7 1 294 116 439 4.25e-94 287
MS.gene63371.t1 AT5G22860 48.318 327 133 7 1 294 116 439 4.25e-94 287
MS.gene63371.t1 AT5G22860 48.328 329 134 7 1 296 116 441 6.16e-94 288
MS.gene63371.t1 AT2G24280 42.980 349 156 7 1 312 105 447 1.62e-85 266
MS.gene63371.t1 AT2G24280 43.202 331 150 5 1 294 105 434 2.80e-85 264
MS.gene63371.t1 AT5G22860 48.772 285 125 6 1 267 116 397 3.56e-81 255
MS.gene63371.t1 AT5G22860 48.772 285 125 6 1 267 116 397 3.56e-81 255
MS.gene63371.t1 AT5G22860 48.772 285 125 6 1 267 116 397 3.56e-81 255
MS.gene63371.t1 AT5G22860 50.000 250 105 5 1 233 116 362 7.55e-73 230
MS.gene63371.t1 AT5G65760 40.419 334 156 7 3 296 120 450 1.16e-70 229
MS.gene63371.t1 AT3G28680 45.087 173 90 3 65 232 18 190 8.74e-45 152
MS.gene63371.t1 AT4G36195 27.692 325 178 12 5 290 105 411 5.73e-17 82.0
MS.gene63371.t1 AT4G36195 27.692 325 178 12 5 290 105 411 6.96e-17 81.6
MS.gene63371.t1 AT4G36195 27.692 325 178 12 5 290 105 411 6.96e-17 81.6
MS.gene63371.t1 AT4G36190 28.000 325 177 12 5 290 105 411 1.90e-16 80.5
MS.gene63371.t1 AT2G18080 27.019 322 185 11 5 290 105 412 2.32e-16 80.1

Find 89 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAAATTGGTTCTTAAA+AGG 0.269085 2.4:+22007003 MS.gene63371:CDS
CAGCGCTTGCTGCATGGTTT+CGG 0.295334 2.4:+22005944 MS.gene63371:intron
ACGAATCTATAAGAAATTCT+TGG 0.299771 2.4:+22006208 MS.gene63371:CDS
ATAGCCGTAAGATGTGTTAA+AGG 0.307501 2.4:-22005236 None:intergenic
GAACAGTGTCAGAAAGATTT+TGG 0.314945 2.4:+22006848 MS.gene63371:CDS
TTTGCACCAGTATATTTATC+TGG 0.315590 2.4:-22006590 None:intergenic
CTGATGGCAGGATATTAAAT+TGG 0.323382 2.4:+22006992 MS.gene63371:intron
CTTAGAAAGTCAAGACCATT+TGG 0.345243 2.4:-22006258 None:intergenic
TCTTGTTAGCACCGGGGTTA+CGG 0.352151 2.4:+22005202 MS.gene63371:intron
TGTTATTACAAGGGATTTCC+AGG 0.355365 2.4:+22006059 MS.gene63371:CDS
CTTGTTAGCACCGGGGTTAC+GGG 0.379441 2.4:+22005203 MS.gene63371:intron
AGAAGTTCTGCTATATTTGA+AGG 0.387890 2.4:+22005291 MS.gene63371:CDS
GTTTACCCGCCACTACTATA+AGG 0.389378 2.4:-22007065 None:intergenic
CAGAGTTCTCAACAATATAT+CGG 0.390024 2.4:+22007187 MS.gene63371:CDS
ATATATGCTGGTATGGTTGC+TGG 0.398273 2.4:+22006539 MS.gene63371:CDS
TGCCACCTCTTGCAGTCCCT+TGG 0.399043 2.4:+22006385 MS.gene63371:intron
GTTAATCCAGATAAATATAC+TGG 0.411412 2.4:+22006584 MS.gene63371:CDS
AGATTCGTAGCATGTCTTAC+TGG 0.414112 2.4:-22006193 None:intergenic
GCAGTGGAGCTGATGAAGCC+AGG 0.436348 2.4:-22005996 None:intergenic
ACATCATGGTAAGCACTTGC+TGG 0.449811 2.4:-22006039 None:intergenic
CCACGTTGCCATCGGCGCCC+TGG 0.451634 2.4:+22005978 MS.gene63371:CDS
GTCCCCGGTGATTGTGGTTG+GGG 0.453330 2.4:+22005333 MS.gene63371:CDS
AGTCCCCGGTGATTGTGGTT+GGG 0.454230 2.4:+22005332 MS.gene63371:CDS
GCTGGATCACTTTCAGTTGA+AGG 0.458086 2.4:-22007494 None:intergenic
TTATGAGTTGAAAGACTACT+TGG 0.474066 2.4:+22006415 MS.gene63371:CDS
CTTTGTTGAACTAACCATGC+TGG 0.474625 2.4:-22007512 None:intergenic
AAGTAGTCTTTCAACTCATA+AGG 0.475658 2.4:-22006413 None:intergenic
TAGCCGTAAGATGTGTTAAA+GGG 0.480646 2.4:-22005235 None:intergenic
CAGTAGGATATATGCTGGTA+TGG 0.483745 2.4:+22006532 MS.gene63371:CDS
GTGCAAAGCCATTTGATGCT+TGG 0.484214 2.4:+22006606 MS.gene63371:CDS
TGCCATCTCCAAGCATCAAA+TGG 0.486119 2.4:-22006614 None:intergenic
CACTACTATAAGGATCTCTT+AGG 0.486263 2.4:-22007055 None:intergenic
CTTACCATGATGTTATTACA+AGG 0.494198 2.4:+22006049 MS.gene63371:CDS
ATTATGCAGCGCTTGCTGCA+TGG 0.494968 2.4:+22005938 MS.gene63371:intron
TGATGAAGCCAGGGCGCCGA+TGG 0.496753 2.4:-22005986 None:intergenic
GCTGGTATGGTTGCTGGCTA+TGG 0.497013 2.4:+22006545 MS.gene63371:CDS
CAGTGGAGCTGATGAAGCCA+GGG 0.504666 2.4:-22005995 None:intergenic
CAGTTGAAGGTACAAGATCC+TGG 0.514821 2.4:-22007481 None:intergenic
GAAGTAGCATCTAAGCCAAA+TGG 0.516219 2.4:+22006243 MS.gene63371:CDS
CTTGGGGAACATGTATCAAA+AGG 0.521218 2.4:+22006433 MS.gene63371:CDS
AACTCATAAGGCTGTTCCAA+GGG 0.522619 2.4:-22006401 None:intergenic
AAGTCCCCGGTGATTGTGGT+TGG 0.524318 2.4:+22005331 MS.gene63371:CDS
GCCTCACAAATAGTCGTAAG+TGG 0.525609 2.4:-22006476 None:intergenic
GCCATTGATAGAGCTGCCTA+TGG 0.525815 2.4:+22006497 MS.gene63371:CDS
GTGCCCTTTAACACATCTTA+CGG 0.525900 2.4:+22005232 MS.gene63371:CDS
CTCGTGAAGTTGAAAGGTTG+AGG 0.534543 2.4:-22006818 None:intergenic
ATTTGATGCTTGGAGATGGC+AGG 0.535537 2.4:+22006616 MS.gene63371:CDS
CATACCATTGACTGTAGGTA+GGG 0.537541 2.4:-22007222 None:intergenic
AGCCATTTGATGCTTGGAGA+TGG 0.541350 2.4:+22006612 MS.gene63371:CDS
GCATATCTCGTGAAGTTGAA+AGG 0.541851 2.4:-22006824 None:intergenic
TCCATAGGCAGCTCTATCAA+TGG 0.545444 2.4:-22006498 None:intergenic
AATCCCTTGTAATAACATCA+TGG 0.547144 2.4:-22006053 None:intergenic
CAGGGCGCCGATGGCAACGT+GGG 0.551704 2.4:-22005977 None:intergenic
TATGAGTTGAAAGACTACTT+GGG 0.552868 2.4:+22006416 MS.gene63371:CDS
TAGTAGAGCTTTAAAAGAAG+TGG 0.553368 2.4:-22005085 None:intergenic
GTCCTCAGTAGGATATATGC+TGG 0.559053 2.4:+22006527 MS.gene63371:CDS
AAGTATCCCCACGTTGCCAT+CGG 0.561028 2.4:+22005970 MS.gene63371:CDS
TCCCCGGTGATTGTGGTTGG+GGG 0.566819 2.4:+22005334 MS.gene63371:CDS
GAGATCCTTATAGTAGTGGC+GGG 0.576464 2.4:+22007060 MS.gene63371:CDS
ATAGTGATGCCTATCGGCAT+AGG 0.577307 2.4:+22006776 MS.gene63371:CDS
ACATACCATTGACTGTAGGT+AGG 0.577382 2.4:-22007223 None:intergenic
CCTCACAAATAGTCGTAAGT+GGG 0.579482 2.4:-22006475 None:intergenic
CTAAGAGATCCTTATAGTAG+TGG 0.586212 2.4:+22007056 MS.gene63371:CDS
GTTGCCCTACCTACAGTCAA+TGG 0.587397 2.4:+22007218 MS.gene63371:CDS
GAACTTCTGCGTAATCAGCA+AGG 0.588716 2.4:-22005276 None:intergenic
CCAGGGCGCCGATGGCAACG+TGG 0.590070 2.4:-22005978 None:intergenic
CAACTCATAAGGCTGTTCCA+AGG 0.594364 2.4:-22006402 None:intergenic
CAAGAATTTCCTATGCCGAT+AGG 0.596607 2.4:-22006785 None:intergenic
ACTGAGGACATCATCTCCAT+AGG 0.596855 2.4:-22006513 None:intergenic
AGAGATCCTTATAGTAGTGG+CGG 0.604183 2.4:+22007059 MS.gene63371:CDS
ACTGAAATAGTGATGCCTAT+CGG 0.607219 2.4:+22006770 MS.gene63371:CDS
AACTTCTGCGTAATCAGCAA+GGG 0.607600 2.4:-22005275 None:intergenic
ACAAAAGTCCCCGGTGATTG+TGG 0.615008 2.4:+22005327 MS.gene63371:CDS
TTACCATGATGTTATTACAA+GGG 0.628091 2.4:+22006050 MS.gene63371:CDS
ATGTTATCAAAGTAGAGCAG+TGG 0.628222 2.4:-22006012 None:intergenic
ATGGAGATGATGTCCTCAGT+AGG 0.629079 2.4:+22006516 MS.gene63371:CDS
AAATATTATATAAAAGCCAA+AGG 0.629866 2.4:-22007164 None:intergenic
CTCACAAATAGTCGTAAGTG+GGG 0.630633 2.4:-22006474 None:intergenic
GCACTGACTTCCCGTAACCC+CGG 0.631226 2.4:-22005213 None:intergenic
CCCACTTACGACTATTTGTG+AGG 0.636619 2.4:+22006475 MS.gene63371:CDS
ATGAGTTGAAAGACTACTTG+GGG 0.641981 2.4:+22006417 MS.gene63371:CDS
AGGGCGCCGATGGCAACGTG+GGG 0.656511 2.4:-22005976 None:intergenic
ACTACATGCACAAAAGTCCC+CGG 0.662515 2.4:+22005318 MS.gene63371:CDS
CAACTGAAAGTGATCCAGCA+TGG 0.662989 2.4:+22007498 MS.gene63371:CDS
ATATACATACCATTGACTGT+AGG 0.684175 2.4:-22007227 None:intergenic
AGCTCTACTAGTGTACATTG+AGG 0.685630 2.4:+22005098 MS.gene63371:CDS
GGGGAACATGTATCAAAAGG+CGG 0.688405 2.4:+22006436 MS.gene63371:CDS
TCACAAATAGTCGTAAGTGG+GGG 0.699413 2.4:-22006473 None:intergenic
TACCAGCATATATCCTACTG+AGG 0.704311 2.4:-22006529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATTTAAATATAAT+AGG - chr2.4:22005455-22005474 None:intergenic 0.0%
!!! TTTGATTTATCAAATATAAA+TGG + chr2.4:22006139-22006158 MS.gene63371:intron 10.0%
!! AAAAAAAAGAAGGAAATATA+TGG - chr2.4:22006318-22006337 None:intergenic 15.0%
!! AAATATTATATAAAAGCCAA+AGG - chr2.4:22007167-22007186 None:intergenic 15.0%
!! AAGATCAAGTAAATAATTAT+TGG + chr2.4:22006668-22006687 MS.gene63371:intron 15.0%
!! ATTTATCAAATATAAATGGA+TGG + chr2.4:22006143-22006162 MS.gene63371:intron 15.0%
!! TCAAACAAAAAAAAAAAAGA+AGG - chr2.4:22006328-22006347 None:intergenic 15.0%
!!! ATATTAAATTGGTTCTTAAA+AGG + chr2.4:22007003-22007022 MS.gene63371:CDS 15.0%
!!! TTTTTTTTTGTTTGAACAAT+AGG + chr2.4:22006333-22006352 MS.gene63371:intron 15.0%
!! AATTTAATTAATTGGTATGC+AGG + chr2.4:22006167-22006186 MS.gene63371:intron 20.0%
!! ACAATCTCTATTTAATTGAA+TGG + chr2.4:22005639-22005658 MS.gene63371:intron 20.0%
!! ATCAAGTAAATAATTATTGG+AGG + chr2.4:22006671-22006690 MS.gene63371:intron 20.0%
!! CAATCTCTATTTAATTGAAT+GGG + chr2.4:22005640-22005659 MS.gene63371:intron 20.0%
!! GGTATGCTTAAAATTATAAA+AGG - chr2.4:22005530-22005549 None:intergenic 20.0%
!! TATAGAACCATTTGATTAAT+TGG - chr2.4:22007425-22007444 None:intergenic 20.0%
!! TCTTAGTACATATACTAAAA+AGG + chr2.4:22005795-22005814 MS.gene63371:intron 20.0%
!! TGGATGGTAATTTAATTAAT+TGG + chr2.4:22006159-22006178 MS.gene63371:intron 20.0%
!! TTGTAAACCAATTAATCAAA+TGG + chr2.4:22007415-22007434 MS.gene63371:intron 20.0%
!!! AAACTATATGGTGTATTTTT+CGG + chr2.4:22005693-22005712 MS.gene63371:intron 20.0%
!!! GGAGGATTTTTTATATTATT+TGG + chr2.4:22006689-22006708 MS.gene63371:intron 20.0%
!!! TATAAAAGGTATGTTTCAAA+AGG - chr2.4:22005516-22005535 None:intergenic 20.0%
!!! TTTACAAATGTTGATTTTTC+AGG + chr2.4:22007449-22007468 MS.gene63371:intron 20.0%
! ACGAATCTATAAGAAATTCT+TGG + chr2.4:22006208-22006227 MS.gene63371:CDS 25.0%
! GTTAATCCAGATAAATATAC+TGG + chr2.4:22006584-22006603 MS.gene63371:CDS 25.0%
! TATAAAGCAGAAACTTTCTT+TGG - chr2.4:22005551-22005570 None:intergenic 25.0%
! TTACCATGATGTTATTACAA+GGG + chr2.4:22006050-22006069 MS.gene63371:CDS 25.0%
! TTGAAAAAACAGAAAAACGA+TGG - chr2.4:22005417-22005436 None:intergenic 25.0%
!! AAAAAAATATAGTTTGCGAC+AGG - chr2.4:22005765-22005784 None:intergenic 25.0%
!! AAAAAATATAGTTTGCGACA+GGG - chr2.4:22005764-22005783 None:intergenic 25.0%
!!! ATACACCATATAGTTTTACT+TGG - chr2.4:22005689-22005708 None:intergenic 25.0%
!!! ATGATTATGTTTTTCTAGAG+TGG - chr2.4:22005859-22005878 None:intergenic 25.0%
!!! GTTTTAAAATAAGCTTCCTT+TGG + chr2.4:22007148-22007167 MS.gene63371:intron 25.0%
!!! TTTAATTTTCTTGTTAGCAC+CGG + chr2.4:22005194-22005213 MS.gene63371:intron 25.0%
AAGTAGTCTTTCAACTCATA+AGG - chr2.4:22006416-22006435 None:intergenic 30.0%
AATCCCTTGTAATAACATCA+TGG - chr2.4:22006056-22006075 None:intergenic 30.0%
AGAAGTTCTGCTATATTTGA+AGG + chr2.4:22005291-22005310 MS.gene63371:CDS 30.0%
CAGAGTTCTCAACAATATAT+CGG + chr2.4:22007187-22007206 MS.gene63371:CDS 30.0%
CTTACCATGATGTTATTACA+AGG + chr2.4:22006049-22006068 MS.gene63371:CDS 30.0%
GTATGTTTCAAAAGGTTTCA+AGG - chr2.4:22005508-22005527 None:intergenic 30.0%
TGCGTACTTCTATTATGTTT+AGG + chr2.4:22006918-22006937 MS.gene63371:intron 30.0%
TTTGCACCAGTATATTTATC+TGG - chr2.4:22006593-22006612 None:intergenic 30.0%
! AGCAACATCATTTTCTCAAA+TGG + chr2.4:22007032-22007051 MS.gene63371:CDS 30.0%
! ATATACATACCATTGACTGT+AGG - chr2.4:22007230-22007249 None:intergenic 30.0%
! TATGAGTTGAAAGACTACTT+GGG + chr2.4:22006416-22006435 MS.gene63371:CDS 30.0%
! TTAATTTTCTTGTTAGCACC+GGG + chr2.4:22005195-22005214 MS.gene63371:intron 30.0%
! TTATGAGTTGAAAGACTACT+TGG + chr2.4:22006415-22006434 MS.gene63371:CDS 30.0%
!! AATAACTATGCTGATTTACC+TGG - chr2.4:22006080-22006099 None:intergenic 30.0%
!! TAGTAGAGCTTTAAAAGAAG+TGG - chr2.4:22005088-22005107 None:intergenic 30.0%
!! TCAAGGAGTATTGTAATTAC+AGG - chr2.4:22005491-22005510 None:intergenic 30.0%
ACTGAAATAGTGATGCCTAT+CGG + chr2.4:22006770-22006789 MS.gene63371:CDS 35.0%
ATAGCCGTAAGATGTGTTAA+AGG - chr2.4:22005239-22005258 None:intergenic 35.0%
ATGTTATCAAAGTAGAGCAG+TGG - chr2.4:22006015-22006034 None:intergenic 35.0%
CACTACTATAAGGATCTCTT+AGG - chr2.4:22007058-22007077 None:intergenic 35.0%
CTAAGAGATCCTTATAGTAG+TGG + chr2.4:22007056-22007075 MS.gene63371:CDS 35.0%
CTGATGGCAGGATATTAAAT+TGG + chr2.4:22006992-22007011 MS.gene63371:intron 35.0%
CTTAGAAAGTCAAGACCATT+TGG - chr2.4:22006261-22006280 None:intergenic 35.0%
GCTATCATCAATGTGATGAT+TGG - chr2.4:22005735-22005754 None:intergenic 35.0%
GTGCACCAAGTAAAACTATA+TGG + chr2.4:22005681-22005700 MS.gene63371:intron 35.0%
TAGCCGTAAGATGTGTTAAA+GGG - chr2.4:22005238-22005257 None:intergenic 35.0%
TGATGATTGGCAGATTATTG+AGG - chr2.4:22005722-22005741 None:intergenic 35.0%
TGTTATTACAAGGGATTTCC+AGG + chr2.4:22006059-22006078 MS.gene63371:CDS 35.0%
! ATGAGTTGAAAGACTACTTG+GGG + chr2.4:22006417-22006436 MS.gene63371:CDS 35.0%
! GAACAGTGTCAGAAAGATTT+TGG + chr2.4:22006848-22006867 MS.gene63371:CDS 35.0%
! GGATATCTTTTGTCAAGACT+TGG + chr2.4:22005816-22005835 MS.gene63371:intron 35.0%
! TAATTTTCTTGTTAGCACCG+GGG + chr2.4:22005196-22005215 MS.gene63371:intron 35.0%
AACTCATAAGGCTGTTCCAA+GGG - chr2.4:22006404-22006423 None:intergenic 40.0%
AACTTCTGCGTAATCAGCAA+GGG - chr2.4:22005278-22005297 None:intergenic 40.0%
AATTGCATCGTTGTGACTGA+TGG + chr2.4:22006976-22006995 MS.gene63371:intron 40.0%
AGAGATCCTTATAGTAGTGG+CGG + chr2.4:22007059-22007078 MS.gene63371:CDS 40.0%
AGATTCGTAGCATGTCTTAC+TGG - chr2.4:22006196-22006215 None:intergenic 40.0%
AGCTCTACTAGTGTACATTG+AGG + chr2.4:22005098-22005117 MS.gene63371:CDS 40.0%
ATATATGCTGGTATGGTTGC+TGG + chr2.4:22006539-22006558 MS.gene63371:CDS 40.0%
ATTAAGAGGTGATCCAGTGA+GGG - chr2.4:22006886-22006905 None:intergenic 40.0%
CAAGAATTTCCTATGCCGAT+AGG - chr2.4:22006788-22006807 None:intergenic 40.0%
CACTGGATCACCTCTTAATA+CGG + chr2.4:22006887-22006906 MS.gene63371:intron 40.0%
CAGTAGGATATATGCTGGTA+TGG + chr2.4:22006532-22006551 MS.gene63371:CDS 40.0%
CCTCACAAATAGTCGTAAGT+GGG - chr2.4:22006478-22006497 None:intergenic 40.0%
CTCACAAATAGTCGTAAGTG+GGG - chr2.4:22006477-22006496 None:intergenic 40.0%
CTTGGGGAACATGTATCAAA+AGG + chr2.4:22006433-22006452 MS.gene63371:CDS 40.0%
GAAGTAGCATCTAAGCCAAA+TGG + chr2.4:22006243-22006262 MS.gene63371:CDS 40.0%
GCATATCTCGTGAAGTTGAA+AGG - chr2.4:22006827-22006846 None:intergenic 40.0%
GTGCCCTTTAACACATCTTA+CGG + chr2.4:22005232-22005251 MS.gene63371:CDS 40.0%
TACCAGCATATATCCTACTG+AGG - chr2.4:22006532-22006551 None:intergenic 40.0%
TATTAAGAGGTGATCCAGTG+AGG - chr2.4:22006887-22006906 None:intergenic 40.0%
TCACAAATAGTCGTAAGTGG+GGG - chr2.4:22006476-22006495 None:intergenic 40.0%
! ACATACCATTGACTGTAGGT+AGG - chr2.4:22007226-22007245 None:intergenic 40.0%
! CATACCATTGACTGTAGGTA+GGG - chr2.4:22007225-22007244 None:intergenic 40.0%
!!! TTTTTCAGGAACTCATTGCC+AGG + chr2.4:22007463-22007482 MS.gene63371:intron 40.0%
ACATCATGGTAAGCACTTGC+TGG - chr2.4:22006042-22006061 None:intergenic 45.0%
ACTACATGCACAAAAGTCCC+CGG + chr2.4:22005318-22005337 MS.gene63371:CDS 45.0%
ACTGAGGACATCATCTCCAT+AGG - chr2.4:22006516-22006535 None:intergenic 45.0%
AGCCATTTGATGCTTGGAGA+TGG + chr2.4:22006612-22006631 MS.gene63371:CDS 45.0%
ATAGTGATGCCTATCGGCAT+AGG + chr2.4:22006776-22006795 MS.gene63371:CDS 45.0%
ATGGAGATGATGTCCTCAGT+AGG + chr2.4:22006516-22006535 MS.gene63371:CDS 45.0%
ATTTGATGCTTGGAGATGGC+AGG + chr2.4:22006616-22006635 MS.gene63371:CDS 45.0%
CAACTCATAAGGCTGTTCCA+AGG - chr2.4:22006405-22006424 None:intergenic 45.0%
CAACTGAAAGTGATCCAGCA+TGG + chr2.4:22007498-22007517 MS.gene63371:CDS 45.0%
CACTTGACCTCCGTATTAAG+AGG - chr2.4:22006900-22006919 None:intergenic 45.0%
CCCACTTACGACTATTTGTG+AGG + chr2.4:22006475-22006494 MS.gene63371:CDS 45.0%
CTCGTGAAGTTGAAAGGTTG+AGG - chr2.4:22006821-22006840 None:intergenic 45.0%
GAACTTCTGCGTAATCAGCA+AGG - chr2.4:22005279-22005298 None:intergenic 45.0%
GAGATCCTTATAGTAGTGGC+GGG + chr2.4:22007060-22007079 MS.gene63371:CDS 45.0%
GCCTCACAAATAGTCGTAAG+TGG - chr2.4:22006479-22006498 None:intergenic 45.0%
GCTGGATCACTTTCAGTTGA+AGG - chr2.4:22007497-22007516 None:intergenic 45.0%
GGGGAACATGTATCAAAAGG+CGG + chr2.4:22006436-22006455 MS.gene63371:CDS 45.0%
GTCCTCAGTAGGATATATGC+TGG + chr2.4:22006527-22006546 MS.gene63371:CDS 45.0%
GTGCAAAGCCATTTGATGCT+TGG + chr2.4:22006606-22006625 MS.gene63371:CDS 45.0%
GTTTACCCGCCACTACTATA+AGG - chr2.4:22007068-22007087 None:intergenic 45.0%
TCCATAGGCAGCTCTATCAA+TGG - chr2.4:22006501-22006520 None:intergenic 45.0%
TGCCATCTCCAAGCATCAAA+TGG - chr2.4:22006617-22006636 None:intergenic 45.0%
TGGATCACCTCTTAATACGG+AGG + chr2.4:22006890-22006909 MS.gene63371:intron 45.0%
! CAGTTGAAGGTACAAGATCC+TGG - chr2.4:22007484-22007503 None:intergenic 45.0%
AAGTATCCCCACGTTGCCAT+CGG + chr2.4:22005970-22005989 MS.gene63371:CDS 50.0%
ACAAAAGTCCCCGGTGATTG+TGG + chr2.4:22005327-22005346 MS.gene63371:CDS 50.0%
GCCATTGATAGAGCTGCCTA+TGG + chr2.4:22006497-22006516 MS.gene63371:CDS 50.0%
GTTGCCCTACCTACAGTCAA+TGG + chr2.4:22007218-22007237 MS.gene63371:CDS 50.0%
! ATTATGCAGCGCTTGCTGCA+TGG + chr2.4:22005938-22005957 MS.gene63371:intron 50.0%
! TCTTGTTAGCACCGGGGTTA+CGG + chr2.4:22005202-22005221 MS.gene63371:intron 50.0%
AAGTCCCCGGTGATTGTGGT+TGG + chr2.4:22005331-22005350 MS.gene63371:CDS 55.0%
AGTCCCCGGTGATTGTGGTT+GGG + chr2.4:22005332-22005351 MS.gene63371:CDS 55.0%
ATCCCCCAACCACAATCACC+GGG - chr2.4:22005339-22005358 None:intergenic 55.0%
CAGTGGAGCTGATGAAGCCA+GGG - chr2.4:22005998-22006017 None:intergenic 55.0%
CTGTTCCAAGGGACTGCAAG+AGG - chr2.4:22006393-22006412 None:intergenic 55.0%
GATCCCCCAACCACAATCAC+CGG - chr2.4:22005340-22005359 None:intergenic 55.0%
GCATCGTTGTGACTGATGGC+AGG + chr2.4:22006980-22006999 MS.gene63371:intron 55.0%
GTGGTTGGGGGATCATATGC+TGG + chr2.4:22005346-22005365 MS.gene63371:CDS 55.0%
TTCCAAGGGACTGCAAGAGG+TGG - chr2.4:22006390-22006409 None:intergenic 55.0%
! CAGCGCTTGCTGCATGGTTT+CGG + chr2.4:22005944-22005963 MS.gene63371:intron 55.0%
! CTTGTTAGCACCGGGGTTAC+GGG + chr2.4:22005203-22005222 MS.gene63371:intron 55.0%
! GCTGGTATGGTTGCTGGCTA+TGG + chr2.4:22006545-22006564 MS.gene63371:CDS 55.0%
GCAGTGGAGCTGATGAAGCC+AGG - chr2.4:22005999-22006018 None:intergenic 60.0%
GTCCCCGGTGATTGTGGTTG+GGG + chr2.4:22005333-22005352 MS.gene63371:CDS 60.0%
TCCCCCAACCACAATCACCG+GGG - chr2.4:22005338-22005357 None:intergenic 60.0%
TCCCCGGTGATTGTGGTTGG+GGG + chr2.4:22005334-22005353 MS.gene63371:CDS 60.0%
TGATCCAGTGAGGGCGAGGT+TGG - chr2.4:22006877-22006896 None:intergenic 60.0%
TGCCACCTCTTGCAGTCCCT+TGG + chr2.4:22006385-22006404 MS.gene63371:intron 60.0%
!! GCACTGACTTCCCGTAACCC+CGG - chr2.4:22005216-22005235 None:intergenic 60.0%
GAGGTGATCCAGTGAGGGCG+AGG - chr2.4:22006881-22006900 None:intergenic 65.0%
GTGTCCAACCTCGCCCTCAC+TGG + chr2.4:22006870-22006889 MS.gene63371:intron 65.0%
!! TGATGAAGCCAGGGCGCCGA+TGG - chr2.4:22005989-22006008 None:intergenic 65.0%
!! AGGGCGCCGATGGCAACGTG+GGG - chr2.4:22005979-22005998 None:intergenic 70.0%
!! CAGGGCGCCGATGGCAACGT+GGG - chr2.4:22005980-22005999 None:intergenic 70.0%
CCACGTTGCCATCGGCGCCC+TGG + chr2.4:22005978-22005997 MS.gene63371:CDS 75.0%
!! CCAGGGCGCCGATGGCAACG+TGG - chr2.4:22005981-22006000 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 22005072 22007524 22005072 ID=MS.gene63371
chr2.4 mRNA 22005072 22007524 22005072 ID=MS.gene63371.t1;Parent=MS.gene63371
chr2.4 exon 22005072 22005119 22005072 ID=MS.gene63371.t1.exon1;Parent=MS.gene63371.t1
chr2.4 CDS 22005072 22005119 22005072 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22005211 22005370 22005211 ID=MS.gene63371.t1.exon2;Parent=MS.gene63371.t1
chr2.4 CDS 22005211 22005370 22005211 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22005947 22006080 22005947 ID=MS.gene63371.t1.exon3;Parent=MS.gene63371.t1
chr2.4 CDS 22005947 22006080 22005947 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22006189 22006301 22006189 ID=MS.gene63371.t1.exon4;Parent=MS.gene63371.t1
chr2.4 CDS 22006189 22006301 22006189 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22006400 22006637 22006400 ID=MS.gene63371.t1.exon5;Parent=MS.gene63371.t1
chr2.4 CDS 22006400 22006637 22006400 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22006764 22006871 22006764 ID=MS.gene63371.t1.exon6;Parent=MS.gene63371.t1
chr2.4 CDS 22006764 22006871 22006764 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22007002 22007081 22007002 ID=MS.gene63371.t1.exon7;Parent=MS.gene63371.t1
chr2.4 CDS 22007002 22007081 22007002 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22007161 22007239 22007161 ID=MS.gene63371.t1.exon8;Parent=MS.gene63371.t1
chr2.4 CDS 22007161 22007239 22007161 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
chr2.4 exon 22007471 22007524 22007471 ID=MS.gene63371.t1.exon9;Parent=MS.gene63371.t1
chr2.4 CDS 22007471 22007524 22007471 ID=cds.MS.gene63371.t1;Parent=MS.gene63371.t1
Gene Sequence

>MS.gene63371

ATGACGGATAATGCCACTTCTTTTAAAGCTCTACTAGTGTACATTGAGGTACTAAATAGAAAACTATTTCTTTTGACACTCATTGATCTAAATCAAATTAGTTTTACGATTCTGATAAAACTTTTAATTTTCTTGTTAGCACCGGGGTTACGGGAAGTCAGTGCCCTTTAACACATCTTACGGCTATTTAAACTCAGCACAAGCCCTTGCTGATTACGCAGAAGTTCTGCTATATTTGAAGGATGCACTACATGCACAAAAGTCCCCGGTGATTGTGGTTGGGGGATCATATGCTGGAAGTTAGTTTTTTAAATTATGTTTATGTTTTTCTTCACATTTTTACCATCGTTTTTCTGTTTTTTCAATTTTTTCTACTTAATCCTATTATATTTAAATTATATTTTTAAAATTTGAAACCTGTAATTACAATACTCCTTGAAACCTTTTGAAACATACCTTTTATAATTTTAAGCATACCAAAGAAAGTTTCTGCTTTATATAAAAGTTTCAGAATATTAGTTGCATATGTATGAAGTGTTAAAATCAATTATTTCTAAGCTTAAACAAACAATCTCTATTTAATTGAATGGGAAAATTTCTCATTGTAAAGTGCACCAAGTAAAACTATATGGTGTATTTTTCGGTGACCTCAATAATCTGCCAATCATCACATTGATGATAGCTGAAATCCCTGTCGCAAACTATATTTTTTTTCAAGATTACTCTTAGTACATATACTAAAAAGGATATCTTTTGTCAAGACTTGGTAAGTATTAGTACTATACCACTCTAGAAAAACATAATCATACAAAAACAAAGTCTTATTGTGTTGATGTCATCTTAATTAATGTCACATGTATTTGTTAATTATGCAGCGCTTGCTGCATGGTTTCGGCTTAAGTATCCCCACGTTGCCATCGGCGCCCTGGCTTCATCAGCTCCACTGCTCTACTTTGATAACATCACACCAGCAAGTGCTTACCATGATGTTATTACAAGGGATTTCCAGGTAAATCAGCATAGTTATTTTTTTATCTTTTATGTTTGTTGATTAATATATATTTATTTTTGATTTATCAAATATAAATGGATGGTAATTTAATTAATTGGTATGCAGGAAACCAGTAAGACATGCTACGAATCTATAAGAAATTCTTGGTTTGAAATTGATGAAGTAGCATCTAAGCCAAATGGTCTTGACTTTCTAAGCAAGAAATTCAACACTTGCTAGTAAACACTGTTTCCATATATTTCCTTCTTTTTTTTTTTTGTTTGAACAATAGGATCAAGTTCTGACTTAAACTTGTTCAAATTGCCACCTCTTGCAGTCCCTTGGAACAGCCTTATGAGTTGAAAGACTACTTGGGGAACATGTATCAAAAGGCGGCACAGTACAATGATCCCCCACTTACGACTATTTGTGAGGCCATTGATAGAGCTGCCTATGGAGATGATGTCCTCAGTAGGATATATGCTGGTATGGTTGCTGGCTATGGCAACAAAAAATGCAATGTTAATCCAGATAAATATACTGGTGCAAAGCCATTTGATGCTTGGAGATGGCAGGTAGTCACATTGAAATTTGAGTAATTATATAAGATCAAGTAAATAATTATTGGAGGATTTTTTATATTATTTGGTGCACATATTTCGTTGTTCTAAAAAAAATTATGAATTATTTTATGCATTCAGACGTGCACTGAAATAGTGATGCCTATCGGCATAGGAAATTCTTGCTTGCTTCAACCTCAACCTTTCAACTTCACGAGATATGCTGAACAGTGTCAGAAAGATTTTGGTGTCCAACCTCGCCCTCACTGGATCACCTCTTAATACGGAGGTCAAGTGCGTACTTCTATTATGTTTAGGTTTCAATATTAATATTACATTATCAATAGAAAATCAATTGCATCGTTGTGACTGATGGCAGGATATTAAATTGGTTCTTAAAAGGTTTGCGAGCAACATCATTTTCTCAAATGGCCTAAGAGATCCTTATAGTAGTGGCGGGTAAACATGCAAAATCTAAAAAATAAATTCATCTTAATTATTTTAGAATAATTATTTTAGAACAATGTTTTAAAATAAGCTTCCTTTGGCTTTTATATAATATTTCAGAGTTCTCAACAATATATCGGATAGTCTTGTTGCCCTACCTACAGTCAATGGTATGTATATCTTACTTTTTTTTTTTGAAATTATGTATGTCTTGTATTGTGTGAATACATACAATTTCGTTGTCTAATTATATTATATTATGCACATTCAGATGTAAGTATATAGAGAATACATTGTAGTAGTAGTAAGAGTACGTTGCTAACTTTTTATCACTTTTATAAAAAATTGTAAACCAATTAATCAAATGGTTCTATAATGTTTTACAAATGTTGATTTTTCAGGAACTCATTGCCAGGATCTTGTACCTTCAACTGAAAGTGATCCAGCATGGTTAG
Protein sequence

>MS.gene63371.t1

MTDNATSFKALLVYIEHRGYGKSVPFNTSYGYLNSAQALADYAEVLLYLKDALHAQKSPVIVVGGSYAGTLAAWFRLKYPHVAIGALASSAPLLYFDNITPASAYHDVITRDFQETSKTCYESIRNSWFEIDEVASKPNGLDFLSKKFNTCYPLEQPYELKDYLGNMYQKAAQYNDPPLTTICEAIDRAAYGDDVLSRIYAGMVAGYGNKKCNVNPDKYTGAKPFDAWRWQTCTEIVMPIGIGNSCLLQPQPFNFTRYAEQCQKDFGDIKLVLKRFASNIIFSNGLRDPYSSGGFLWLLYNISEFSTIYRIVLLPYLQSMELIARILYLQLKVIQHG