Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63617.t1 | XP_003628404.1 | 74.8 | 155 | 10 | 1 | 1 | 126 | 1 | 155 | 1.90E-51 | 213 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63617.t1 | P49332 | 56.5 | 154 | 37 | 1 | 3 | 126 | 4 | 157 | 2.0e-36 | 154.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63617.t1 | G7LB15 | 74.8 | 155 | 10 | 1 | 1 | 126 | 1 | 155 | 1.4e-51 | 213.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050762 | MS.gene63617 | 0.803384 | 3.58E-49 | -1.69E-46 |
MS.gene050763 | MS.gene63617 | 0.803041 | 4.21E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63617.t1 | MTR_8g056940 | 74.839 | 155 | 10 | 1 | 1 | 126 | 1 | 155 | 1.06e-67 | 211 |
MS.gene63617.t1 | MTR_0186s0030 | 76.596 | 141 | 4 | 1 | 1 | 112 | 1 | 141 | 2.70e-63 | 196 |
MS.gene63617.t1 | MTR_2g070150 | 54.795 | 146 | 37 | 1 | 1 | 117 | 1 | 146 | 1.52e-42 | 145 |
MS.gene63617.t1 | MTR_2g070180 | 55.479 | 146 | 36 | 1 | 1 | 117 | 1 | 146 | 9.05e-42 | 144 |
MS.gene63617.t1 | MTR_2g070130 | 52.055 | 146 | 41 | 1 | 1 | 117 | 1 | 146 | 7.88e-40 | 139 |
MS.gene63617.t1 | MTR_2g070060 | 52.055 | 146 | 41 | 1 | 1 | 117 | 1 | 146 | 4.34e-39 | 137 |
MS.gene63617.t1 | MTR_2g070120 | 52.740 | 146 | 40 | 1 | 1 | 117 | 1 | 146 | 1.57e-38 | 135 |
MS.gene63617.t1 | MTR_2g070070 | 50.323 | 155 | 48 | 1 | 1 | 126 | 1 | 155 | 9.02e-38 | 134 |
MS.gene63617.t1 | MTR_4g124130 | 51.701 | 147 | 41 | 2 | 1 | 117 | 1 | 147 | 1.05e-37 | 134 |
MS.gene63617.t1 | MTR_3g467420 | 47.183 | 142 | 46 | 1 | 5 | 117 | 10 | 151 | 1.74e-35 | 128 |
MS.gene63617.t1 | MTR_3g467430 | 46.528 | 144 | 48 | 1 | 3 | 117 | 8 | 151 | 2.18e-35 | 127 |
MS.gene63617.t1 | MTR_2g070110 | 48.052 | 154 | 52 | 2 | 1 | 126 | 1 | 154 | 1.36e-34 | 125 |
MS.gene63617.t1 | MTR_2g070140 | 53.846 | 130 | 31 | 1 | 17 | 117 | 1 | 130 | 1.71e-34 | 124 |
MS.gene63617.t1 | MTR_2g070200 | 48.718 | 156 | 50 | 3 | 1 | 126 | 1 | 156 | 2.84e-34 | 124 |
MS.gene63617.t1 | MTR_2g070210 | 47.771 | 157 | 51 | 2 | 1 | 126 | 1 | 157 | 1.72e-33 | 122 |
MS.gene63617.t1 | MTR_3g074840 | 91.753 | 97 | 8 | 0 | 210 | 306 | 31 | 127 | 2.35e-31 | 114 |
MS.gene63617.t1 | MTR_5g076900 | 38.961 | 154 | 65 | 2 | 2 | 126 | 4 | 157 | 1.44e-23 | 96.7 |
MS.gene63617.t1 | MTR_5g040430 | 50.617 | 81 | 40 | 0 | 4 | 84 | 7 | 87 | 1.27e-21 | 91.3 |
MS.gene63617.t1 | MTR_4g059730 | 58.442 | 77 | 32 | 0 | 1 | 77 | 1 | 77 | 1.50e-21 | 90.9 |
MS.gene63617.t1 | MTR_3g077430 | 100.000 | 43 | 0 | 0 | 118 | 160 | 177 | 219 | 2.70e-21 | 94.0 |
MS.gene63617.t1 | MTR_3g099757 | 57.692 | 78 | 32 | 1 | 1 | 77 | 1 | 78 | 2.95e-21 | 90.5 |
MS.gene63617.t1 | MTR_4g019780 | 37.500 | 152 | 67 | 2 | 3 | 126 | 7 | 158 | 4.04e-21 | 90.1 |
MS.gene63617.t1 | MTR_5g037380 | 41.509 | 159 | 57 | 4 | 4 | 126 | 5 | 163 | 1.01e-20 | 89.0 |
MS.gene63617.t1 | MTR_1g090060 | 64.179 | 67 | 24 | 0 | 11 | 77 | 10 | 76 | 2.27e-20 | 88.2 |
MS.gene63617.t1 | MTR_7g065740 | 63.077 | 65 | 24 | 0 | 13 | 77 | 16 | 80 | 6.19e-20 | 87.0 |
MS.gene63617.t1 | MTR_1g090070 | 61.194 | 67 | 26 | 0 | 11 | 77 | 16 | 82 | 3.25e-19 | 85.1 |
MS.gene63617.t1 | MTR_4g019790 | 60.000 | 65 | 26 | 0 | 13 | 77 | 16 | 80 | 3.51e-19 | 84.7 |
MS.gene63617.t1 | MTR_8g087425 | 59.091 | 66 | 27 | 0 | 11 | 76 | 12 | 77 | 5.01e-19 | 84.3 |
MS.gene63617.t1 | MTR_1g090150 | 54.054 | 74 | 34 | 0 | 3 | 76 | 2 | 75 | 6.50e-19 | 84.0 |
MS.gene63617.t1 | MTR_7g065750 | 54.667 | 75 | 34 | 0 | 3 | 77 | 6 | 80 | 6.57e-19 | 84.0 |
MS.gene63617.t1 | MTR_7g065640 | 58.462 | 65 | 27 | 0 | 13 | 77 | 16 | 80 | 7.44e-19 | 83.6 |
MS.gene63617.t1 | MTR_1g090100 | 64.179 | 67 | 24 | 0 | 11 | 77 | 9 | 75 | 8.17e-19 | 83.6 |
MS.gene63617.t1 | MTR_7g065660 | 41.045 | 134 | 49 | 4 | 13 | 117 | 16 | 148 | 1.47e-18 | 83.2 |
MS.gene63617.t1 | MTR_7g065720 | 52.000 | 75 | 36 | 0 | 3 | 77 | 6 | 80 | 3.14e-17 | 79.3 |
MS.gene63617.t1 | MTR_7g065710 | 39.259 | 135 | 53 | 2 | 13 | 118 | 13 | 147 | 3.66e-17 | 79.3 |
MS.gene63617.t1 | MTR_8g087410 | 52.000 | 75 | 36 | 0 | 3 | 77 | 5 | 79 | 5.38e-17 | 78.6 |
MS.gene63617.t1 | MTR_1g090090 | 59.701 | 67 | 27 | 0 | 11 | 77 | 10 | 76 | 5.83e-17 | 78.6 |
MS.gene63617.t1 | MTR_7g065630 | 32.955 | 176 | 88 | 3 | 3 | 149 | 24 | 198 | 8.59e-17 | 78.6 |
MS.gene63617.t1 | MTR_3g108280 | 86.364 | 44 | 6 | 0 | 200 | 243 | 126 | 169 | 9.93e-17 | 79.7 |
MS.gene63617.t1 | MTR_5g082180 | 86.364 | 44 | 6 | 0 | 200 | 243 | 126 | 169 | 1.07e-16 | 79.3 |
MS.gene63617.t1 | MTR_1g115195 | 53.521 | 71 | 33 | 0 | 7 | 77 | 6 | 76 | 5.57e-16 | 75.9 |
MS.gene63617.t1 | MTR_4g105400 | 79.070 | 43 | 9 | 0 | 118 | 160 | 69 | 111 | 9.08e-16 | 77.0 |
MS.gene63617.t1 | MTR_7g065590 | 50.769 | 65 | 32 | 0 | 13 | 77 | 16 | 80 | 1.54e-15 | 74.7 |
MS.gene63617.t1 | MTR_6g080440 | 61.818 | 55 | 21 | 0 | 22 | 76 | 21 | 75 | 2.10e-15 | 74.3 |
MS.gene63617.t1 | MTR_7g065260 | 51.562 | 64 | 31 | 0 | 13 | 76 | 23 | 86 | 3.63e-15 | 73.9 |
MS.gene63617.t1 | MTR_7g065680 | 50.000 | 74 | 37 | 0 | 3 | 76 | 6 | 79 | 3.75e-15 | 73.6 |
MS.gene63617.t1 | MTR_2g088870 | 96.970 | 33 | 1 | 0 | 160 | 192 | 327 | 359 | 4.58e-15 | 75.5 |
MS.gene63617.t1 | MTR_2g088870 | 96.970 | 33 | 1 | 0 | 160 | 192 | 329 | 361 | 4.60e-15 | 75.5 |
MS.gene63617.t1 | MTR_7g065230 | 52.308 | 65 | 31 | 0 | 13 | 77 | 16 | 80 | 1.34e-14 | 72.0 |
MS.gene63617.t1 | MTR_7g065265 | 50.769 | 65 | 32 | 0 | 13 | 77 | 16 | 80 | 2.52e-14 | 71.2 |
MS.gene63617.t1 | MTR_7g065700 | 51.351 | 74 | 36 | 0 | 3 | 76 | 6 | 79 | 2.60e-14 | 71.2 |
MS.gene63617.t1 | MTR_8g061950 | 52.055 | 73 | 33 | 1 | 7 | 77 | 8 | 80 | 4.71e-14 | 70.9 |
MS.gene63617.t1 | MTR_7g065290 | 50.769 | 65 | 32 | 0 | 13 | 77 | 16 | 80 | 2.38e-13 | 68.6 |
MS.gene63617.t1 | MTR_7g065600 | 46.667 | 75 | 33 | 1 | 10 | 77 | 6 | 80 | 5.09e-13 | 67.4 |
MS.gene63617.t1 | MTR_7g076560 | 84.848 | 33 | 5 | 0 | 160 | 192 | 294 | 326 | 6.38e-13 | 69.3 |
MS.gene63617.t1 | MTR_7g065270 | 33.333 | 135 | 61 | 1 | 13 | 118 | 16 | 150 | 1.19e-12 | 66.6 |
MS.gene63617.t1 | MTR_2g072120 | 87.097 | 31 | 4 | 0 | 47 | 77 | 1 | 31 | 3.32e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63617.t1 | AT1G17170 | 52.258 | 155 | 44 | 2 | 1 | 126 | 1 | 154 | 1.80e-40 | 140 |
MS.gene63617.t1 | AT1G78380 | 51.613 | 155 | 46 | 1 | 1 | 126 | 1 | 155 | 2.00e-40 | 140 |
MS.gene63617.t1 | AT1G78340 | 49.367 | 158 | 51 | 1 | 1 | 129 | 1 | 158 | 3.84e-40 | 140 |
MS.gene63617.t1 | AT1G78370 | 44.509 | 173 | 65 | 2 | 1 | 144 | 1 | 171 | 1.17e-39 | 139 |
MS.gene63617.t1 | AT1G78320 | 51.613 | 155 | 46 | 2 | 1 | 126 | 1 | 155 | 3.97e-38 | 135 |
MS.gene63617.t1 | AT1G17180 | 49.677 | 155 | 49 | 2 | 1 | 126 | 1 | 155 | 1.34e-37 | 133 |
MS.gene63617.t1 | AT1G78360 | 48.718 | 156 | 50 | 2 | 1 | 126 | 1 | 156 | 3.01e-36 | 130 |
MS.gene63617.t1 | AT1G17190 | 48.611 | 144 | 45 | 1 | 3 | 117 | 4 | 147 | 4.09e-36 | 129 |
MS.gene63617.t1 | AT3G43800 | 48.299 | 147 | 44 | 2 | 3 | 117 | 4 | 150 | 8.06e-32 | 118 |
MS.gene63617.t1 | AT1G78320 | 52.344 | 128 | 59 | 2 | 1 | 126 | 1 | 128 | 2.49e-31 | 116 |
MS.gene63617.t1 | AT1G53680 | 42.857 | 154 | 57 | 3 | 4 | 126 | 7 | 160 | 9.45e-29 | 110 |
MS.gene63617.t1 | AT1G74590 | 57.534 | 73 | 31 | 0 | 4 | 76 | 7 | 79 | 3.58e-23 | 95.9 |
MS.gene63617.t1 | AT2G29420 | 57.333 | 75 | 32 | 0 | 2 | 76 | 7 | 81 | 1.29e-22 | 94.4 |
MS.gene63617.t1 | AT3G09270 | 41.379 | 145 | 55 | 3 | 3 | 117 | 5 | 149 | 1.05e-20 | 89.0 |
MS.gene63617.t1 | AT2G29440 | 60.811 | 74 | 29 | 0 | 3 | 76 | 5 | 78 | 1.15e-20 | 89.0 |
MS.gene63617.t1 | AT1G10360 | 51.250 | 80 | 39 | 0 | 3 | 82 | 4 | 83 | 2.60e-20 | 87.8 |
MS.gene63617.t1 | AT2G29450 | 60.811 | 74 | 29 | 0 | 3 | 76 | 5 | 78 | 3.19e-20 | 87.8 |
MS.gene63617.t1 | AT5G62480 | 50.617 | 81 | 40 | 0 | 4 | 84 | 8 | 88 | 2.02e-19 | 85.9 |
MS.gene63617.t1 | AT1G10370 | 43.434 | 99 | 42 | 1 | 7 | 91 | 8 | 106 | 8.97e-18 | 80.9 |
MS.gene63617.t1 | AT2G29480 | 36.364 | 143 | 63 | 2 | 3 | 117 | 6 | 148 | 1.23e-17 | 80.5 |
MS.gene63617.t1 | AT1G59670 | 53.086 | 81 | 37 | 1 | 3 | 82 | 5 | 85 | 1.29e-17 | 80.9 |
MS.gene63617.t1 | AT1G59700 | 52.632 | 76 | 35 | 1 | 3 | 77 | 5 | 80 | 1.67e-17 | 80.5 |
MS.gene63617.t1 | AT2G29490 | 50.667 | 75 | 37 | 0 | 3 | 77 | 6 | 80 | 2.18e-17 | 79.7 |
MS.gene63617.t1 | AT2G29460 | 49.333 | 75 | 38 | 0 | 3 | 77 | 6 | 80 | 3.36e-17 | 79.3 |
MS.gene63617.t1 | AT1G69920 | 50.000 | 72 | 34 | 1 | 7 | 76 | 37 | 108 | 6.73e-16 | 76.3 |
MS.gene63617.t1 | AT1G27140 | 59.091 | 66 | 24 | 1 | 15 | 77 | 17 | 82 | 1.19e-15 | 75.5 |
MS.gene63617.t1 | AT2G40010 | 84.091 | 44 | 7 | 0 | 200 | 243 | 126 | 169 | 1.49e-15 | 76.3 |
MS.gene63617.t1 | AT3G09200 | 81.818 | 44 | 8 | 0 | 200 | 243 | 92 | 135 | 3.15e-15 | 75.1 |
MS.gene63617.t1 | AT1G27130 | 34.375 | 128 | 69 | 2 | 7 | 119 | 9 | 136 | 3.35e-15 | 73.9 |
MS.gene63617.t1 | AT3G09200 | 81.818 | 44 | 8 | 0 | 200 | 243 | 125 | 168 | 4.35e-15 | 75.1 |
MS.gene63617.t1 | AT3G11250 | 81.818 | 44 | 8 | 0 | 200 | 243 | 125 | 168 | 4.55e-15 | 74.7 |
MS.gene63617.t1 | AT1G23340 | 69.565 | 46 | 13 | 1 | 116 | 160 | 117 | 162 | 2.65e-14 | 72.4 |
MS.gene63617.t1 | AT2G29470 | 35.000 | 140 | 62 | 3 | 7 | 117 | 10 | 149 | 4.17e-14 | 70.9 |
MS.gene63617.t1 | AT1G69930 | 48.000 | 75 | 39 | 0 | 3 | 77 | 11 | 85 | 6.15e-14 | 70.5 |
MS.gene63617.t1 | AT1G23340 | 69.565 | 46 | 13 | 1 | 116 | 160 | 117 | 162 | 7.50e-14 | 72.0 |
MS.gene63617.t1 | AT1G23340 | 69.565 | 46 | 13 | 1 | 116 | 160 | 117 | 162 | 7.50e-14 | 72.0 |
MS.gene63617.t1 | AT1G70550 | 71.429 | 42 | 12 | 0 | 119 | 160 | 177 | 218 | 2.05e-13 | 69.7 |
MS.gene63617.t1 | AT1G70550 | 69.767 | 43 | 13 | 0 | 118 | 160 | 176 | 218 | 3.07e-13 | 70.1 |
MS.gene63617.t1 | AT5G35730 | 84.848 | 33 | 5 | 0 | 160 | 192 | 320 | 352 | 1.08e-12 | 68.6 |
MS.gene63617.t1 | AT5G62480 | 46.667 | 60 | 32 | 0 | 4 | 63 | 8 | 67 | 6.88e-11 | 61.2 |
MS.gene63617.t1 | AT1G10750 | 64.286 | 42 | 15 | 0 | 119 | 160 | 179 | 220 | 6.99e-11 | 63.2 |
MS.gene63617.t1 | AT1G10750 | 64.286 | 42 | 15 | 0 | 119 | 160 | 179 | 220 | 9.99e-11 | 62.4 |
Find 87 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGTGACCAACCTTATTT+TGG | 0.219499 | 3.2:+24036284 | MS.gene63617:CDS |
ATGATGATGGATTCACAAAT+TGG | 0.232208 | 3.2:-24035660 | None:intergenic |
ATCTCAGACCTCTTTCTTGC+AGG | 0.239289 | 3.2:+24037865 | MS.gene63617:CDS |
GCTGCCCCAGTTGCTGCTTC+TGG | 0.239470 | 3.2:+24038276 | MS.gene63617:CDS |
GAATCTCTCCTTACAGGTTT+TGG | 0.251029 | 3.2:-24037121 | None:intergenic |
CTAGTTGAATCTCTCCTTAC+AGG | 0.258179 | 3.2:-24037127 | None:intergenic |
GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 3.2:+24036247 | MS.gene63617:CDS |
ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 3.2:-24035618 | None:intergenic |
CAAACTTCTATAGGCCTCTT+TGG | 0.287936 | 3.2:+24037620 | MS.gene63617:CDS |
GCAAGTTCTATCAAAAGATT+TGG | 0.293382 | 3.2:+24037091 | MS.gene63617:CDS |
TCTGATGAAGACATTGGTTT+TGG | 0.305718 | 3.2:+24038363 | MS.gene63617:CDS |
TCTTCTGTTGTTCTTCTGAT+TGG | 0.306036 | 3.2:-24037055 | None:intergenic |
GCACCACCAGAAGCAGCAAC+TGG | 0.316437 | 3.2:-24038282 | None:intergenic |
CTTAGCCAAACACTTCTAAA+AGG | 0.336494 | 3.2:+24037809 | MS.gene63617:intron |
TTGGCAGCGGCAGCGACAGC+GGG | 0.338007 | 3.2:-24038306 | None:intergenic |
GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 3.2:-24035596 | None:intergenic |
GCGATGTTGGAGGAAGGATA+TGG | 0.357510 | 3.2:+24036189 | MS.gene63617:CDS |
CTGATTGGAACAGTTCCTTC+TGG | 0.362002 | 3.2:-24037040 | None:intergenic |
GACAATACCCTTGTTAATCT+TGG | 0.363741 | 3.2:-24037978 | None:intergenic |
TTCCTTCTTTGTCTCCTCCT+TGG | 0.391699 | 3.2:-24038325 | None:intergenic |
CGCTGTCGCTGCCGCTGCCA+AGG | 0.392121 | 3.2:+24038308 | MS.gene63617:CDS |
TACCCTTGTTAATCTTGGTT+GGG | 0.404379 | 3.2:-24037973 | None:intergenic |
GATGAATGGCTTAGTATGTT+TGG | 0.412400 | 3.2:+24035498 | MS.gene63617:CDS |
TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 3.2:-24035636 | None:intergenic |
AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 3.2:+24036217 | MS.gene63617:CDS |
GATTCCAGTTCTTATCCATA+AGG | 0.427078 | 3.2:+24035632 | MS.gene63617:CDS |
AATGTGTCACCACCAAAATA+AGG | 0.439985 | 3.2:-24036296 | None:intergenic |
TGAGATTGAATTGGCAAAGA+AGG | 0.443100 | 3.2:+24036226 | MS.gene63617:CDS |
AAAATGCAGGTTGGCGATGT+TGG | 0.453956 | 3.2:+24036176 | MS.gene63617:intron |
AACAGTGGACAAACTTCTAT+AGG | 0.460566 | 3.2:+24037611 | MS.gene63617:intron |
ATTCCAGTTCTTATCCATAA+GGG | 0.462545 | 3.2:+24035633 | MS.gene63617:CDS |
TGGATAGCATTGGCTGAGAA+AGG | 0.467253 | 3.2:+24035531 | MS.gene63617:CDS |
ACTGGGATGTGACTCGAGAT+TGG | 0.470574 | 3.2:+24037680 | MS.gene63617:CDS |
CTTGGCAGCGGCAGCGACAG+CGG | 0.470986 | 3.2:-24038307 | None:intergenic |
CTGGGATGTGACTCGAGATT+GGG | 0.476699 | 3.2:+24037681 | MS.gene63617:CDS |
CGATGTTGGAGGAAGGATAT+GGG | 0.477865 | 3.2:+24036190 | MS.gene63617:CDS |
ACTCATCGTACTCTTTCTAC+TGG | 0.479852 | 3.2:+24037662 | MS.gene63617:CDS |
CACCACCAGAAGCAGCAACT+GGG | 0.480619 | 3.2:-24038281 | None:intergenic |
GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 3.2:+24036239 | MS.gene63617:CDS |
ATACCCTTGTTAATCTTGGT+TGG | 0.481080 | 3.2:-24037974 | None:intergenic |
ACAGCCACAACAAGTTTGCT+TGG | 0.482361 | 3.2:-24038249 | None:intergenic |
GCCCCAGTTGCTGCTTCTGG+TGG | 0.488160 | 3.2:+24038279 | MS.gene63617:CDS |
AATATACTCAACAATGATGA+TGG | 0.489877 | 3.2:-24035673 | None:intergenic |
AGGGATAAAGTATGAGTACA+AGG | 0.492003 | 3.2:+24035551 | MS.gene63617:CDS |
AGTTGATAATACTTGATGAA+TGG | 0.497119 | 3.2:+24035484 | MS.gene63617:CDS |
CAGCCACAACAAGTTTGCTT+GGG | 0.508296 | 3.2:-24038248 | None:intergenic |
GAAGGAAACCAAAACCTGTA+AGG | 0.512204 | 3.2:+24037113 | MS.gene63617:CDS |
ATAACAAACCTGCAAGAAAG+AGG | 0.529276 | 3.2:-24037873 | None:intergenic |
AAGGAATTAGAGAATGTGCT+TGG | 0.533543 | 3.2:+24036266 | MS.gene63617:CDS |
TTAAGAAAGGAGACAAAGGT+TGG | 0.537479 | 3.2:+24038026 | MS.gene63617:CDS |
TGCAAGAAAGAGGTCTGAGA+TGG | 0.537854 | 3.2:-24037863 | None:intergenic |
GAAGAATCTGATGAAGACAT+TGG | 0.542061 | 3.2:+24038357 | MS.gene63617:CDS |
GGAGTTCCTCAAGGCAACGC+AGG | 0.548252 | 3.2:+24037833 | MS.gene63617:CDS |
CTCATCGTACTCTTTCTACT+GGG | 0.549454 | 3.2:+24037663 | MS.gene63617:CDS |
CTTTGTCTCCTCCTTGGCAG+CGG | 0.550708 | 3.2:-24038319 | None:intergenic |
TGTCGAAATCATTACCCTTG+TGG | 0.555120 | 3.2:+24037997 | MS.gene63617:CDS |
CTTTCTTAACGAGTTCCACA+AGG | 0.556237 | 3.2:-24038012 | None:intergenic |
GTTGGAGGAAGGATATGGGC+TGG | 0.557573 | 3.2:+24036194 | MS.gene63617:CDS |
TGTCGCTGCCGCTGCCAAGG+AGG | 0.558767 | 3.2:+24038311 | MS.gene63617:CDS |
ATGCAGGTTGGCGATGTTGG+AGG | 0.558801 | 3.2:+24036179 | MS.gene63617:intron |
GGCAGCGGCAGCGACAGCGG+GGG | 0.560167 | 3.2:-24038304 | None:intergenic |
TCAAGCCCTGCGTTGCCTTG+AGG | 0.560641 | 3.2:-24037839 | None:intergenic |
GTATGTTTGGTATGAGAGCA+TGG | 0.560760 | 3.2:+24035511 | MS.gene63617:CDS |
CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3.2:+24037970 | MS.gene63617:CDS |
GTTCTATCAAAAGATTTGGA+AGG | 0.566425 | 3.2:+24037095 | MS.gene63617:CDS |
TGACTCGAGATTGGGACCTA+AGG | 0.566935 | 3.2:+24037689 | MS.gene63617:CDS |
GGATAGCATTGGCTGAGAAA+GGG | 0.567915 | 3.2:+24035532 | MS.gene63617:CDS |
CTTGTGGAACTCGTTAAGAA+AGG | 0.568919 | 3.2:+24038013 | MS.gene63617:CDS |
TGGCAGCGGCAGCGACAGCG+GGG | 0.571077 | 3.2:-24038305 | None:intergenic |
ACCACCAGAAGCAGCAACTG+GGG | 0.576891 | 3.2:-24038280 | None:intergenic |
AGCCAAACACTTCTAAAAGG+TGG | 0.589408 | 3.2:+24037812 | MS.gene63617:intron |
GCAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3.2:-24037862 | None:intergenic |
ACACTTGACAGAAGCCAAAG+AGG | 0.592727 | 3.2:-24037634 | None:intergenic |
GAGTTCCTCAAGGCAACGCA+GGG | 0.593740 | 3.2:+24037834 | MS.gene63617:CDS |
TGCCAAGGAGGAGACAAAGA+AGG | 0.595388 | 3.2:+24038323 | MS.gene63617:CDS |
CTAAAAGGTGGAGTTCCTCA+AGG | 0.595487 | 3.2:+24037824 | MS.gene63617:CDS |
CATTGTTGAGTATATTGATG+AGG | 0.596226 | 3.2:+24035680 | MS.gene63617:CDS |
CTCGTTAAGAAAGGAGACAA+AGG | 0.606972 | 3.2:+24038022 | MS.gene63617:CDS |
TTCAACTAGTAGTGATCATG+AGG | 0.614979 | 3.2:+24037141 | MS.gene63617:CDS |
TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 3.2:-24036292 | None:intergenic |
ATTGCCTTTGACAATGGCAG+AGG | 0.625981 | 3.2:+24035461 | None:intergenic |
GGACCCAAGCAAACTTGTTG+TGG | 0.644745 | 3.2:+24038245 | MS.gene63617:intron |
TCTGGTGAAGAATGTCCAGA+AGG | 0.650833 | 3.2:+24037025 | MS.gene63617:intron |
TATGAGAGCATGGATAGCAT+TGG | 0.653537 | 3.2:+24035521 | MS.gene63617:CDS |
AGGTTGGCGATGTTGGAGGA+AGG | 0.664221 | 3.2:+24036183 | MS.gene63617:intron |
ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3.2:+24037971 | MS.gene63617:CDS |
TTTCTTAACGAGTTCCACAA+GGG | 0.676298 | 3.2:-24038011 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATCAACAAATAAGAAATT+TGG | - | chr3.2:24038214-24038233 | None:intergenic | 15.0% |
!! | AATCAACAAATAAGAAATTT+GGG | - | chr3.2:24038213-24038232 | None:intergenic | 15.0% |
!! | TAATGAATTAAATAACATGA+TGG | + | chr3.2:24035906-24035925 | MS.gene63617:intron | 15.0% |
!! | TAATGACATGTAAAATTTAA+AGG | - | chr3.2:24037173-24037192 | None:intergenic | 15.0% |
!! | AAATATGTTAAACCATTGAA+TGG | - | chr3.2:24035826-24035845 | None:intergenic | 20.0% |
!! | AACCATTATCATAAATAGAA+AGG | - | chr3.2:24038113-24038132 | None:intergenic | 20.0% |
!! | AATATGTTAAACCATTGAAT+GGG | - | chr3.2:24035825-24035844 | None:intergenic | 20.0% |
!! | TTAATGTGTTAAAAAAATGC+AGG | + | chr3.2:24036163-24036182 | MS.gene63617:intron | 20.0% |
!!! | ATATTTCTAACAAGTTCTTT+TGG | + | chr3.2:24037510-24037529 | MS.gene63617:intron | 20.0% |
!!! | TATTTTAGTACTTTTCAACA+AGG | - | chr3.2:24038176-24038195 | None:intergenic | 20.0% |
!!! | TTAGTTTGAAATACCATAAA+AGG | - | chr3.2:24037741-24037760 | None:intergenic | 20.0% |
!!! | TTATGTTTATTCTCCATTTT+AGG | + | chr3.2:24037940-24037959 | MS.gene63617:intron | 20.0% |
! | AAAATGTAGATTCTAATGTC+AGG | + | chr3.2:24037773-24037792 | MS.gene63617:intron | 25.0% |
! | AAGGACGAAATTTATAAATC+AGG | + | chr3.2:24036871-24036890 | MS.gene63617:intron | 25.0% |
! | AATATACTCAACAATGATGA+TGG | - | chr3.2:24035676-24035695 | None:intergenic | 25.0% |
! | ACATTCTTCATATTTCGTAA+TGG | + | chr3.2:24036050-24036069 | MS.gene63617:intron | 25.0% |
! | ATACTACAACAATGGATAAA+AGG | + | chr3.2:24036973-24036992 | MS.gene63617:intron | 25.0% |
! | ATTAGAAGAATGTAACAACA+AGG | + | chr3.2:24037391-24037410 | MS.gene63617:intron | 25.0% |
! | GCATTAATTTAAACTAGTCA+AGG | + | chr3.2:24036852-24036871 | MS.gene63617:intron | 25.0% |
! | GTCCTTTCTATTTATGATAA+TGG | + | chr3.2:24038108-24038127 | MS.gene63617:intron | 25.0% |
! | GTTATTGAAATTATTACCAG+TGG | - | chr3.2:24036808-24036827 | None:intergenic | 25.0% |
! | TAGAGAAGACAATAAAAAGA+AGG | - | chr3.2:24035935-24035954 | None:intergenic | 25.0% |
! | TCAAATAATCTAATCCAAAG+AGG | - | chr3.2:24036543-24036562 | None:intergenic | 25.0% |
! | TTGTCTTCTCTAATATTCAA+TGG | + | chr3.2:24035943-24035962 | MS.gene63617:intron | 25.0% |
! | TTTATGAAAACACAAGAACA+GGG | + | chr3.2:24037264-24037283 | MS.gene63617:intron | 25.0% |
!! | AAGCTATAAACTGTTTTCAT+AGG | - | chr3.2:24036656-24036675 | None:intergenic | 25.0% |
!! | TTTTATGAAAACACAAGAAC+AGG | + | chr3.2:24037263-24037282 | MS.gene63617:intron | 25.0% |
!!! | AAAACAGCTCAAGTTTTTTT+GGG | - | chr3.2:24037247-24037266 | None:intergenic | 25.0% |
!!! | AACTTAAGCTTTTAGGATAT+TGG | - | chr3.2:24037457-24037476 | None:intergenic | 25.0% |
!!! | AGTTGATAATACTTGATGAA+TGG | + | chr3.2:24035484-24035503 | MS.gene63617:CDS | 25.0% |
!!! | GTATTGTTTTTGCTTTTGAA+TGG | + | chr3.2:24035871-24035890 | MS.gene63617:intron | 25.0% |
!!! | TAAAACAGCTCAAGTTTTTT+TGG | - | chr3.2:24037248-24037267 | None:intergenic | 25.0% |
!!! | TAATGCAAAGTCATTTTGTA+TGG | - | chr3.2:24036838-24036857 | None:intergenic | 25.0% |
!!! | TTGTTGATTTTGTTAAATGC+AGG | + | chr3.2:24038224-24038243 | MS.gene63617:intron | 25.0% |
AAAGAGAGATGAGATTGAAT+TGG | + | chr3.2:24036217-24036236 | MS.gene63617:CDS | 30.0% | |
AATTGACCATTTGGTCATAA+AGG | + | chr3.2:24037414-24037433 | MS.gene63617:intron | 30.0% | |
AGTAAAAACTAGAAGAGAAC+AGG | - | chr3.2:24037210-24037229 | None:intergenic | 30.0% | |
ATTCCAGTTCTTATCCATAA+GGG | + | chr3.2:24035633-24035652 | MS.gene63617:CDS | 30.0% | |
ATTTGTGATACTGTTTGAGA+AGG | + | chr3.2:24036583-24036602 | MS.gene63617:intron | 30.0% | |
CAACCAAGTCTGTAATAATA+TGG | - | chr3.2:24036104-24036123 | None:intergenic | 30.0% | |
CAAGTTCAAAAAGGTCTAAT+AGG | - | chr3.2:24037317-24037336 | None:intergenic | 30.0% | |
CATTGTTGAGTATATTGATG+AGG | + | chr3.2:24035680-24035699 | MS.gene63617:CDS | 30.0% | |
CTTCTCTAATATTCAATGGA+TGG | + | chr3.2:24035947-24035966 | MS.gene63617:intron | 30.0% | |
GAGATGTATGAGACTATTAA+GGG | - | chr3.2:24036346-24036365 | None:intergenic | 30.0% | |
GATCCATATTATTACAGACT+TGG | + | chr3.2:24036098-24036117 | MS.gene63617:intron | 30.0% | |
GCAAGTTCTATCAAAAGATT+TGG | + | chr3.2:24037091-24037110 | MS.gene63617:CDS | 30.0% | |
GTATATTGATGAGGTTTGAA+AGG | + | chr3.2:24035689-24035708 | MS.gene63617:intron | 30.0% | |
GTTCTATCAAAAGATTTGGA+AGG | + | chr3.2:24037095-24037114 | MS.gene63617:CDS | 30.0% | |
TGAGATGTATGAGACTATTA+AGG | - | chr3.2:24036347-24036366 | None:intergenic | 30.0% | |
TGTGTTAAAAAAATGCAGGT+TGG | + | chr3.2:24036167-24036186 | MS.gene63617:intron | 30.0% | |
! | ATACCATAAAAGGTGTATGT+AGG | - | chr3.2:24037731-24037750 | None:intergenic | 30.0% |
! | CTATAAACTGTTTTCATAGG+AGG | - | chr3.2:24036653-24036672 | None:intergenic | 30.0% |
! | TCTTCATATTTCGTAATGGA+TGG | + | chr3.2:24036054-24036073 | MS.gene63617:intron | 30.0% |
! | TTTCTTTTCTCTATAACCAG+TGG | + | chr3.2:24036498-24036517 | MS.gene63617:intron | 30.0% |
!! | ATGATGATGGATTCACAAAT+TGG | - | chr3.2:24035663-24035682 | None:intergenic | 30.0% |
!! | CTAACAAGTTCTTTTGGTTA+TGG | + | chr3.2:24037516-24037535 | MS.gene63617:intron | 30.0% |
!! | GATTCATTTGCAAAAGCATT+TGG | - | chr3.2:24035599-24035618 | None:intergenic | 30.0% |
!!! | CATGCTTATTGATTTTCTTG+AGG | - | chr3.2:24036466-24036485 | None:intergenic | 30.0% |
AACAGTGGACAAACTTCTAT+AGG | + | chr3.2:24037611-24037630 | MS.gene63617:intron | 35.0% | |
AAGGAATTAGAGAATGTGCT+TGG | + | chr3.2:24036266-24036285 | MS.gene63617:CDS | 35.0% | |
AATCCAAAGAGGCAAAATGT+CGG | - | chr3.2:24036532-24036551 | None:intergenic | 35.0% | |
AATGTGTCACCACCAAAATA+AGG | - | chr3.2:24036299-24036318 | None:intergenic | 35.0% | |
ACAAACATTCCTCATACCTT+AGG | - | chr3.2:24037708-24037727 | None:intergenic | 35.0% | |
ACAACAAGGAATTGACCATT+TGG | + | chr3.2:24037405-24037424 | MS.gene63617:intron | 35.0% | |
ACGTATCCTTTATGACCAAA+TGG | - | chr3.2:24037423-24037442 | None:intergenic | 35.0% | |
ACTGGAATCTTCTTGTGAAT+TGG | - | chr3.2:24035621-24035640 | None:intergenic | 35.0% | |
AGAGCAGAAAGAAAAATCAC+TGG | - | chr3.2:24037571-24037590 | None:intergenic | 35.0% | |
AGGGATAAAGTATGAGTACA+AGG | + | chr3.2:24035551-24035570 | MS.gene63617:CDS | 35.0% | |
ATAACAAACCTGCAAGAAAG+AGG | - | chr3.2:24037876-24037895 | None:intergenic | 35.0% | |
ATACCCTTGTTAATCTTGGT+TGG | - | chr3.2:24037977-24037996 | None:intergenic | 35.0% | |
ATAGTCATATCTCACAAGGA+AGG | - | chr3.2:24036025-24036044 | None:intergenic | 35.0% | |
ATCCCAACCAAGATTAACAA+GGG | + | chr3.2:24037971-24037990 | MS.gene63617:CDS | 35.0% | |
ATGGATAAAAGGTTAGTGAG+AGG | + | chr3.2:24036984-24037003 | MS.gene63617:intron | 35.0% | |
CAATCTATCAAATCACCATC+AGG | - | chr3.2:24036730-24036749 | None:intergenic | 35.0% | |
CTTAGCCAAACACTTCTAAA+AGG | + | chr3.2:24037809-24037828 | MS.gene63617:intron | 35.0% | |
GAAGAATCTGATGAAGACAT+TGG | + | chr3.2:24038357-24038376 | MS.gene63617:CDS | 35.0% | |
GAATGGGACACAAAAAACTT+TGG | - | chr3.2:24035809-24035828 | None:intergenic | 35.0% | |
GACAATACCCTTGTTAATCT+TGG | - | chr3.2:24037981-24038000 | None:intergenic | 35.0% | |
GACAGAAAGTAAGAGGATTA+AGG | + | chr3.2:24036920-24036939 | MS.gene63617:intron | 35.0% | |
GAGTTGAAACTTAACGAAGA+TGG | - | chr3.2:24037361-24037380 | None:intergenic | 35.0% | |
GATGAATGGCTTAGTATGTT+TGG | + | chr3.2:24035498-24035517 | MS.gene63617:CDS | 35.0% | |
GATTCCAGTTCTTATCCATA+AGG | + | chr3.2:24035632-24035651 | MS.gene63617:CDS | 35.0% | |
GTAAGAGGATTAAGGTTTAC+AGG | + | chr3.2:24036928-24036947 | MS.gene63617:intron | 35.0% | |
GTTCAAAAAGGTCTAATAGG+CGG | - | chr3.2:24037314-24037333 | None:intergenic | 35.0% | |
TACCCTTGTTAATCTTGGTT+GGG | - | chr3.2:24037976-24037995 | None:intergenic | 35.0% | |
TCCTATAGTCATATCTCACA+AGG | - | chr3.2:24036029-24036048 | None:intergenic | 35.0% | |
TCCTTGTGAGATATGACTAT+AGG | + | chr3.2:24036025-24036044 | MS.gene63617:intron | 35.0% | |
TCTTCTGTTGTTCTTCTGAT+TGG | - | chr3.2:24037058-24037077 | None:intergenic | 35.0% | |
TGAGATTGAATTGGCAAAGA+AGG | + | chr3.2:24036226-24036245 | MS.gene63617:CDS | 35.0% | |
TGATGAGGTTTGAAAGGATA+AGG | + | chr3.2:24035695-24035714 | MS.gene63617:intron | 35.0% | |
TTAAGAAAGGAGACAAAGGT+TGG | + | chr3.2:24038026-24038045 | MS.gene63617:CDS | 35.0% | |
TTCAAAAAGGTCTAATAGGC+GGG | - | chr3.2:24037313-24037332 | None:intergenic | 35.0% | |
TTCAACTAGTAGTGATCATG+AGG | + | chr3.2:24037141-24037160 | MS.gene63617:CDS | 35.0% | |
TTGATCATCCTAAGCTTCAA+GGG | + | chr3.2:24036776-24036795 | MS.gene63617:intron | 35.0% | |
TTTCCCTTATGGATAAGAAC+TGG | - | chr3.2:24035639-24035658 | None:intergenic | 35.0% | |
TTTCTTAACGAGTTCCACAA+GGG | - | chr3.2:24038014-24038033 | None:intergenic | 35.0% | |
TTTGAGAGACAGAAAGTAAG+AGG | + | chr3.2:24036913-24036932 | MS.gene63617:intron | 35.0% | |
TTTGATCATCCTAAGCTTCA+AGG | + | chr3.2:24036775-24036794 | MS.gene63617:intron | 35.0% | |
! | ACCTTTTTGAACTTGAAGCA+TGG | + | chr3.2:24037322-24037341 | MS.gene63617:intron | 35.0% |
! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr3.2:24035745-24035764 | MS.gene63617:intron | 35.0% |
! | CCTAAAAGCTTAAGTTGTCA+GGG | + | chr3.2:24037461-24037480 | MS.gene63617:intron | 35.0% |
! | CTGAACTTGCTTTATAAGTC+TGG | - | chr3.2:24036412-24036431 | None:intergenic | 35.0% |
! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr3.2:24035746-24035765 | MS.gene63617:intron | 35.0% |
! | TCCTAAAAGCTTAAGTTGTC+AGG | + | chr3.2:24037460-24037479 | MS.gene63617:intron | 35.0% |
! | TGTCCTACATACACCTTTTA+TGG | + | chr3.2:24037725-24037744 | MS.gene63617:intron | 35.0% |
!! | ATAAGTCTGGTTAGTCTTCA+AGG | - | chr3.2:24036399-24036418 | None:intergenic | 35.0% |
!! | TAAGTCTGGTTAGTCTTCAA+GGG | - | chr3.2:24036398-24036417 | None:intergenic | 35.0% |
!!! | ACGAGAAGGTAAGTTTTGTT+AGG | + | chr3.2:24035781-24035800 | MS.gene63617:intron | 35.0% |
!!! | ATTTTGGTGGTGACACATTT+GGG | + | chr3.2:24036300-24036319 | MS.gene63617:intron | 35.0% |
!!! | CACAAATTGGTTTTCCCTTA+TGG | - | chr3.2:24035650-24035669 | None:intergenic | 35.0% |
!!! | GACATTGGTTTTGGTCTATT+TGG | + | chr3.2:24038372-24038391 | MS.gene63617:CDS | 35.0% |
!!! | GTTTTTTGTGTCCCATTCAA+TGG | + | chr3.2:24035811-24035830 | MS.gene63617:intron | 35.0% |
!!! | TATTTTGGTGGTGACACATT+TGG | + | chr3.2:24036299-24036318 | MS.gene63617:intron | 35.0% |
!!! | TCTGATGAAGACATTGGTTT+TGG | + | chr3.2:24038363-24038382 | MS.gene63617:CDS | 35.0% |
AAGAAAAATCACTGGCACTG+CGG | - | chr3.2:24037563-24037582 | None:intergenic | 40.0% | |
ACTCATCGTACTCTTTCTAC+TGG | + | chr3.2:24037662-24037681 | MS.gene63617:CDS | 40.0% | |
AGAAGTTTGTCCACTGTTCA+TGG | - | chr3.2:24037609-24037628 | None:intergenic | 40.0% | |
AGCTTAGGATGATCAAAAGC+TGG | - | chr3.2:24036772-24036791 | None:intergenic | 40.0% | |
AGGACCACAAGCATAAGAAA+AGG | - | chr3.2:24038093-24038112 | None:intergenic | 40.0% | |
ATCATGTTCTCCATGAACAG+TGG | + | chr3.2:24037596-24037615 | MS.gene63617:intron | 40.0% | |
CAAACTTCTATAGGCCTCTT+TGG | + | chr3.2:24037620-24037639 | MS.gene63617:CDS | 40.0% | |
CATATCTCACAAGGAAGGAA+AGG | - | chr3.2:24036020-24036039 | None:intergenic | 40.0% | |
CATCCCAACCAAGATTAACA+AGG | + | chr3.2:24037970-24037989 | MS.gene63617:CDS | 40.0% | |
CCAAAGGGATACTACAACAA+TGG | + | chr3.2:24036965-24036984 | MS.gene63617:intron | 40.0% | |
CCATTGTTGTAGTATCCCTT+TGG | - | chr3.2:24036968-24036987 | None:intergenic | 40.0% | |
CTAGTTGAATCTCTCCTTAC+AGG | - | chr3.2:24037130-24037149 | None:intergenic | 40.0% | |
CTCATCGTACTCTTTCTACT+GGG | + | chr3.2:24037663-24037682 | MS.gene63617:CDS | 40.0% | |
CTCGTTAAGAAAGGAGACAA+AGG | + | chr3.2:24038022-24038041 | MS.gene63617:CDS | 40.0% | |
CTTGTGGAACTCGTTAAGAA+AGG | + | chr3.2:24038013-24038032 | MS.gene63617:CDS | 40.0% | |
CTTTCTTAACGAGTTCCACA+AGG | - | chr3.2:24038015-24038034 | None:intergenic | 40.0% | |
GAAGGAAACCAAAACCTGTA+AGG | + | chr3.2:24037113-24037132 | MS.gene63617:CDS | 40.0% | |
GATACTGTTTGAGAAGGTCA+TGG | + | chr3.2:24036589-24036608 | MS.gene63617:intron | 40.0% | |
GGACCACAAGCATAAGAAAA+GGG | - | chr3.2:24038092-24038111 | None:intergenic | 40.0% | |
GTATGTTTGGTATGAGAGCA+TGG | + | chr3.2:24035511-24035530 | MS.gene63617:CDS | 40.0% | |
TCAAAAAGGTCTAATAGGCG+GGG | - | chr3.2:24037312-24037331 | None:intergenic | 40.0% | |
TGCTTTCCAAGTTAAGCATC+AGG | + | chr3.2:24038066-24038085 | MS.gene63617:intron | 40.0% | |
TGTCACCACCAAAATAAGGT+TGG | - | chr3.2:24036295-24036314 | None:intergenic | 40.0% | |
TGTCGAAATCATTACCCTTG+TGG | + | chr3.2:24037997-24038016 | MS.gene63617:CDS | 40.0% | |
TTAGTGAGAGGTTTCAGTTG+TGG | + | chr3.2:24036996-24037015 | MS.gene63617:intron | 40.0% | |
! | AGCCAAACACTTCTAAAAGG+TGG | + | chr3.2:24037812-24037831 | MS.gene63617:intron | 40.0% |
! | ATTTTGTTGCAGAGTCCTGA+TGG | + | chr3.2:24036712-24036731 | MS.gene63617:intron | 40.0% |
! | CCCTGACAACTTAAGCTTTT+AGG | - | chr3.2:24037464-24037483 | None:intergenic | 40.0% |
! | GAATCTCTCCTTACAGGTTT+TGG | - | chr3.2:24037124-24037143 | None:intergenic | 40.0% |
! | GCAAAGAAGGAGTTGATTGA+AGG | + | chr3.2:24036239-24036258 | MS.gene63617:CDS | 40.0% |
! | GCCATGCTTCAAGTTCAAAA+AGG | - | chr3.2:24037326-24037345 | None:intergenic | 40.0% |
! | GGAGTTGATTGAAGGCTTAA+AGG | + | chr3.2:24036247-24036266 | MS.gene63617:CDS | 40.0% |
! | TATGAGAGCATGGATAGCAT+TGG | + | chr3.2:24035521-24035540 | MS.gene63617:CDS | 40.0% |
! | TTACCGACATTTTGCCTCTT+TGG | + | chr3.2:24036526-24036545 | MS.gene63617:intron | 40.0% |
! | TTTCAGTTGTGGACTGATTC+TGG | + | chr3.2:24037007-24037026 | MS.gene63617:intron | 40.0% |
!! | AAGTCTGGTTAGTCTTCAAG+GGG | - | chr3.2:24036397-24036416 | None:intergenic | 40.0% |
!! | CTTGGTGACCAACCTTATTT+TGG | + | chr3.2:24036284-24036303 | MS.gene63617:CDS | 40.0% |
!!! | AAGTTTTTTTGGGTGTGGTG+TGG | - | chr3.2:24037237-24037256 | None:intergenic | 40.0% |
!!! | AGCTCAAGTTTTTTTGGGTG+TGG | - | chr3.2:24037242-24037261 | None:intergenic | 40.0% |
!!! | CTCCACCTTTTAGAAGTGTT+TGG | - | chr3.2:24037817-24037836 | None:intergenic | 40.0% |
AAAGGGCCTGATGCTTAACT+TGG | - | chr3.2:24038075-24038094 | None:intergenic | 45.0% | |
ACACTTGACAGAAGCCAAAG+AGG | - | chr3.2:24037637-24037656 | None:intergenic | 45.0% | |
AGATTGGGACCTAAGGTATG+AGG | + | chr3.2:24037696-24037715 | MS.gene63617:intron | 45.0% | |
AGCTTTCTCGTAAGGATCTG+AGG | - | chr3.2:24035733-24035752 | None:intergenic | 45.0% | |
ATCTCAGACCTCTTTCTTGC+AGG | + | chr3.2:24037865-24037884 | MS.gene63617:CDS | 45.0% | |
CAAAAAGGTCTAATAGGCGG+GGG | - | chr3.2:24037311-24037330 | None:intergenic | 45.0% | |
CAACAAGGTCATCTTCAGTG+AGG | - | chr3.2:24038161-24038180 | None:intergenic | 45.0% | |
CAGTGAGGTAAAGAACCTCA+GGG | - | chr3.2:24038146-24038165 | None:intergenic | 45.0% | |
CGATGTTGGAGGAAGGATAT+GGG | + | chr3.2:24036190-24036209 | MS.gene63617:CDS | 45.0% | |
CTAAAAGGTGGAGTTCCTCA+AGG | + | chr3.2:24037824-24037843 | MS.gene63617:CDS | 45.0% | |
CTGATTGGAACAGTTCCTTC+TGG | - | chr3.2:24037043-24037062 | None:intergenic | 45.0% | |
CTTGCTTGAGCTTTCTCGTA+AGG | - | chr3.2:24035741-24035760 | None:intergenic | 45.0% | |
GCTTTCTCGTAAGGATCTGA+GGG | - | chr3.2:24035732-24035751 | None:intergenic | 45.0% | |
GGGATGTTGAGCACCTAAAA+TGG | - | chr3.2:24037956-24037975 | None:intergenic | 45.0% | |
GGTTTATGCCCTTGAAGCTT+AGG | - | chr3.2:24036787-24036806 | None:intergenic | 45.0% | |
GTTTACAGGATCCACCAGAA+AGG | + | chr3.2:24036942-24036961 | MS.gene63617:intron | 45.0% | |
TCAGTGAGGTAAAGAACCTC+AGG | - | chr3.2:24038147-24038166 | None:intergenic | 45.0% | |
TCTGGTGAAGAATGTCCAGA+AGG | + | chr3.2:24037025-24037044 | MS.gene63617:intron | 45.0% | |
TGCAAGAAAGAGGTCTGAGA+TGG | - | chr3.2:24037866-24037885 | None:intergenic | 45.0% | |
TGGTTCAATGTTTAGCCCTG+AGG | + | chr3.2:24038128-24038147 | MS.gene63617:intron | 45.0% | |
TTCCTTCTTTGTCTCCTCCT+TGG | - | chr3.2:24038328-24038347 | None:intergenic | 45.0% | |
! | AAAATGCAGGTTGGCGATGT+TGG | + | chr3.2:24036176-24036195 | MS.gene63617:intron | 45.0% |
! | AACGAAGATGGACTTACGCA+TGG | - | chr3.2:24037349-24037368 | None:intergenic | 45.0% |
! | ACAGCCACAACAAGTTTGCT+TGG | - | chr3.2:24038252-24038271 | None:intergenic | 45.0% |
! | ACGAAGATGGACTTACGCAT+GGG | - | chr3.2:24037348-24037367 | None:intergenic | 45.0% |
! | AGGCCCTTTTCTTATGCTTG+TGG | + | chr3.2:24038086-24038105 | MS.gene63617:intron | 45.0% |
! | CAGCCACAACAAGTTTGCTT+GGG | - | chr3.2:24038251-24038270 | None:intergenic | 45.0% |
! | GCAAGAAAGAGGTCTGAGAT+GGG | - | chr3.2:24037865-24037884 | None:intergenic | 45.0% |
! | GTGGCTAGAATCTGAGACAA+TGG | - | chr3.2:24036375-24036394 | None:intergenic | 45.0% |
! | TAGTATCCCTTTGGCCTTTC+TGG | - | chr3.2:24036959-24036978 | None:intergenic | 45.0% |
!! | GGATAGCATTGGCTGAGAAA+GGG | + | chr3.2:24035532-24035551 | MS.gene63617:CDS | 45.0% |
!! | GGCTGATTTTGTCAACGAGA+AGG | + | chr3.2:24035767-24035786 | MS.gene63617:intron | 45.0% |
!! | TGGATAGCATTGGCTGAGAA+AGG | + | chr3.2:24035531-24035550 | MS.gene63617:CDS | 45.0% |
!!! | GGTGACCAACCTTATTTTGG+TGG | + | chr3.2:24036287-24036306 | MS.gene63617:CDS | 45.0% |
AATGTCGGTAACACTGCCAC+TGG | - | chr3.2:24036517-24036536 | None:intergenic | 50.0% | |
ACTGGGATGTGACTCGAGAT+TGG | + | chr3.2:24037680-24037699 | MS.gene63617:CDS | 50.0% | |
CTGGGATGTGACTCGAGATT+GGG | + | chr3.2:24037681-24037700 | MS.gene63617:CDS | 50.0% | |
GATCCACCAGAAAGGCCAAA+GGG | + | chr3.2:24036950-24036969 | MS.gene63617:intron | 50.0% | |
GCGATGTTGGAGGAAGGATA+TGG | + | chr3.2:24036189-24036208 | MS.gene63617:CDS | 50.0% | |
TGACTCGAGATTGGGACCTA+AGG | + | chr3.2:24037689-24037708 | MS.gene63617:CDS | 50.0% | |
TGCCAAGGAGGAGACAAAGA+AGG | + | chr3.2:24038323-24038342 | MS.gene63617:CDS | 50.0% | |
! | GCTTCAAGGGCATAAACCAC+TGG | + | chr3.2:24036789-24036808 | MS.gene63617:intron | 50.0% |
! | TATCCCTTTGGCCTTTCTGG+TGG | - | chr3.2:24036956-24036975 | None:intergenic | 50.0% |
!! | GGACCCAAGCAAACTTGTTG+TGG | + | chr3.2:24038245-24038264 | MS.gene63617:intron | 50.0% |
!! | TCTGGTTAGTCTTCAAGGGG+TGG | - | chr3.2:24036394-24036413 | None:intergenic | 50.0% |
ACCACCAGAAGCAGCAACTG+GGG | - | chr3.2:24038283-24038302 | None:intergenic | 55.0% | |
AGGTTGGCGATGTTGGAGGA+AGG | + | chr3.2:24036183-24036202 | MS.gene63617:intron | 55.0% | |
CACCACCAGAAGCAGCAACT+GGG | - | chr3.2:24038284-24038303 | None:intergenic | 55.0% | |
CTTTGTCTCCTCCTTGGCAG+CGG | - | chr3.2:24038322-24038341 | None:intergenic | 55.0% | |
GAGTTCCTCAAGGCAACGCA+GGG | + | chr3.2:24037834-24037853 | MS.gene63617:CDS | 55.0% | |
GGATCCACCAGAAAGGCCAA+AGG | + | chr3.2:24036949-24036968 | MS.gene63617:intron | 55.0% | |
GTTGGAGGAAGGATATGGGC+TGG | + | chr3.2:24036194-24036213 | MS.gene63617:CDS | 55.0% | |
! | ATGCAGGTTGGCGATGTTGG+AGG | + | chr3.2:24036179-24036198 | MS.gene63617:intron | 55.0% |
GCACCACCAGAAGCAGCAAC+TGG | - | chr3.2:24038285-24038304 | None:intergenic | 60.0% | |
GGAGTTCCTCAAGGCAACGC+AGG | + | chr3.2:24037833-24037852 | MS.gene63617:CDS | 60.0% | |
TCAAGCCCTGCGTTGCCTTG+AGG | - | chr3.2:24037842-24037861 | None:intergenic | 60.0% | |
! | GCCCCAGTTGCTGCTTCTGG+TGG | + | chr3.2:24038279-24038298 | MS.gene63617:CDS | 65.0% |
! | GCTGCCCCAGTTGCTGCTTC+TGG | + | chr3.2:24038276-24038295 | MS.gene63617:CDS | 65.0% |
CTTGGCAGCGGCAGCGACAG+CGG | - | chr3.2:24038310-24038329 | None:intergenic | 70.0% | |
TGTCGCTGCCGCTGCCAAGG+AGG | + | chr3.2:24038311-24038330 | MS.gene63617:CDS | 70.0% | |
TTGGCAGCGGCAGCGACAGC+GGG | - | chr3.2:24038309-24038328 | None:intergenic | 70.0% | |
CGCTGTCGCTGCCGCTGCCA+AGG | + | chr3.2:24038308-24038327 | MS.gene63617:CDS | 75.0% | |
TGGCAGCGGCAGCGACAGCG+GGG | - | chr3.2:24038308-24038327 | None:intergenic | 75.0% | |
! | GGCAGCGGCAGCGACAGCGG+GGG | - | chr3.2:24038307-24038326 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 24035474 | 24038404 | 24035474 | ID=MS.gene63617 |
chr3.2 | mRNA | 24035474 | 24038404 | 24035474 | ID=MS.gene63617.t1;Parent=MS.gene63617 |
chr3.2 | exon | 24035474 | 24035701 | 24035474 | ID=MS.gene63617.t1.exon1;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24035474 | 24035701 | 24035474 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24036185 | 24036308 | 24036185 | ID=MS.gene63617.t1.exon2;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24036185 | 24036308 | 24036185 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24037035 | 24037162 | 24037035 | ID=MS.gene63617.t1.exon3;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24037035 | 24037162 | 24037035 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24037616 | 24037710 | 24037616 | ID=MS.gene63617.t1.exon4;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24037616 | 24037710 | 24037616 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24037814 | 24037886 | 24037814 | ID=MS.gene63617.t1.exon5;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24037814 | 24037886 | 24037814 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24037962 | 24038075 | 24037962 | ID=MS.gene63617.t1.exon6;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24037962 | 24038075 | 24037962 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
chr3.2 | exon | 24038246 | 24038404 | 24038246 | ID=MS.gene63617.t1.exon7;Parent=MS.gene63617.t1 |
chr3.2 | CDS | 24038246 | 24038404 | 24038246 | ID=cds.MS.gene63617.t1;Parent=MS.gene63617.t1 |
Gene Sequence |
Protein sequence |