Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63906.t1 | AET00713.2 | 91.8 | 367 | 30 | 0 | 1 | 367 | 13 | 379 | 2.00E-196 | 694.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63906.t1 | Q9M4A2 | 67.7 | 347 | 112 | 0 | 19 | 365 | 13 | 359 | 1.1e-142 | 507.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63906.t1 | G7K4J7 | 91.8 | 367 | 30 | 0 | 1 | 367 | 13 | 379 | 1.5e-196 | 694.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63906 | MS.gene073798 | PPI |
| MS.gene63906 | MS.gene029883 | PPI |
| MS.gene63906 | MS.gene30892 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63906.t1 | MTR_5g095090 | 91.826 | 367 | 30 | 0 | 1 | 367 | 13 | 379 | 0.0 | 705 |
| MS.gene63906.t1 | MTR_5g095040 | 88.360 | 378 | 33 | 1 | 1 | 367 | 1 | 378 | 0.0 | 681 |
| MS.gene63906.t1 | MTR_1g067040 | 37.676 | 284 | 176 | 1 | 79 | 362 | 130 | 412 | 1.54e-68 | 222 |
| MS.gene63906.t1 | MTR_5g084590 | 33.750 | 240 | 157 | 2 | 82 | 319 | 32 | 271 | 9.32e-42 | 147 |
| MS.gene63906.t1 | MTR_5g009990 | 32.374 | 278 | 170 | 10 | 93 | 361 | 108 | 376 | 9.84e-35 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63906.t1 | AT3G13170 | 67.723 | 347 | 112 | 0 | 19 | 365 | 13 | 359 | 0.0 | 520 |
| MS.gene63906.t1 | AT3G13170 | 66.260 | 246 | 83 | 0 | 19 | 264 | 13 | 258 | 5.73e-127 | 365 |
| MS.gene63906.t1 | AT3G13170 | 66.260 | 246 | 83 | 0 | 19 | 264 | 13 | 258 | 5.73e-127 | 365 |
| MS.gene63906.t1 | AT5G02820 | 37.413 | 286 | 178 | 1 | 77 | 362 | 138 | 422 | 1.41e-69 | 224 |
| MS.gene63906.t1 | AT1G63990 | 32.056 | 287 | 179 | 9 | 87 | 364 | 102 | 381 | 5.60e-38 | 140 |
| MS.gene63906.t1 | AT1G63990 | 31.361 | 169 | 108 | 4 | 87 | 247 | 102 | 270 | 2.15e-20 | 90.1 |
Find 72 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCTTGTAGGAATATC+TGG | 0.106647 | 5.1:-76042700 | None:intergenic |
| TTTAACTTTACCATGAATTT+TGG | 0.134201 | 5.1:-76043584 | None:intergenic |
| TTAATTTCTTCAACATAAAT+AGG | 0.192602 | 5.1:-76042254 | None:intergenic |
| AAAAGAAGAACCTTTGATTT+TGG | 0.205205 | 5.1:-76040119 | None:intergenic |
| ATTTATGTTGAAGAAATTAA+AGG | 0.241324 | 5.1:+76042257 | MS.gene63906:CDS |
| CTCCTTCCTTTGACTGTTGA+AGG | 0.273694 | 5.1:+76043220 | MS.gene63906:CDS |
| GGCGGGAAAGAGAATGAAAT+TGG | 0.299413 | 5.1:+76040060 | MS.gene63906:CDS |
| ATTCTGGGACCTCCCTTTGC+AGG | 0.300353 | 5.1:-76043369 | None:intergenic |
| ATATAATATTACCTCCATTC+TGG | 0.301151 | 5.1:-76043385 | None:intergenic |
| TTTCTACTATAGGTTAGTTA+TGG | 0.302184 | 5.1:+76042080 | MS.gene63906:intron |
| TCTTCAACATAAATAGGAAT+AGG | 0.312380 | 5.1:-76042248 | None:intergenic |
| TTCTTAGTTCTTACAGTGTT+GGG | 0.361128 | 5.1:-76042153 | None:intergenic |
| CTTCAACATAAATAGGAATA+GGG | 0.367355 | 5.1:-76042247 | None:intergenic |
| TTCCTTTCCACACGGAAAAT+CGG | 0.367504 | 5.1:-76040422 | None:intergenic |
| TTCTACTATAGGTTAGTTAT+GGG | 0.369176 | 5.1:+76042081 | MS.gene63906:intron |
| GCTCCAAGCCAGTGTATCTC+TGG | 0.383166 | 5.1:-76043154 | None:intergenic |
| AATCTACCACATTGAGGTTA+TGG | 0.385588 | 5.1:-76041363 | None:intergenic |
| TTGTAGGTTTCTGCCGGGAA+TGG | 0.390669 | 5.1:+76041556 | MS.gene63906:intron |
| CACTTACAGATTTGGCTCAA+TGG | 0.402893 | 5.1:+76042930 | MS.gene63906:CDS |
| GTTCTTAGTTCTTACAGTGT+TGG | 0.408520 | 5.1:-76042154 | None:intergenic |
| TGTAGGTTTCTGCCGGGAAT+GGG | 0.414660 | 5.1:+76041557 | MS.gene63906:intron |
| TATAATATTACCTCCATTCT+GGG | 0.418070 | 5.1:-76043384 | None:intergenic |
| TTAGTTGTCGAGAAAGAATC+AGG | 0.434559 | 5.1:+76042429 | MS.gene63906:CDS |
| AATGGTTTGCATTGCAGAAC+TGG | 0.437495 | 5.1:-76042579 | None:intergenic |
| ACTGGTCATTTGCTAATCTC+TGG | 0.443074 | 5.1:-76042561 | None:intergenic |
| TATATACCATCCAAAATTCA+TGG | 0.447874 | 5.1:+76043574 | MS.gene63906:CDS |
| AAATTAAAGCCATGTTGCTT+AGG | 0.450595 | 5.1:+76043341 | MS.gene63906:CDS |
| GTACTCTTTCAGATTCCAAC+TGG | 0.455159 | 5.1:+76040296 | MS.gene63906:CDS |
| AAAGGAAGGAGGCACTGCTT+TGG | 0.461247 | 5.1:-76043208 | None:intergenic |
| GAAACACATGTTCACAGATT+AGG | 0.474727 | 5.1:+76040463 | MS.gene63906:CDS |
| TCTCATCAAGTACCCATTCC+CGG | 0.476659 | 5.1:-76041569 | None:intergenic |
| ACTATAGGTTAGTTATGGGC+TGG | 0.476862 | 5.1:+76042085 | MS.gene63906:intron |
| TGCTTAGGTGCTACCTGCAA+AGG | 0.487097 | 5.1:+76043356 | MS.gene63906:CDS |
| TATGGCGACTGCACTGCATC+AGG | 0.496223 | 5.1:-76041345 | None:intergenic |
| GGTTAAAATATCAAAGCCAT+AGG | 0.502614 | 5.1:-76042908 | None:intergenic |
| GCACATACCTGCTTATTGCT+TGG | 0.504875 | 5.1:+76042873 | MS.gene63906:CDS |
| TCTAGCAAATGGCTTATGAC+AGG | 0.510685 | 5.1:+76043116 | MS.gene63906:intron |
| CATTGAGCCAAATCTGTAAG+TGG | 0.517010 | 5.1:-76042929 | None:intergenic |
| TTGGTAGATTGTGATCCCTA+TGG | 0.517652 | 5.1:+76042892 | MS.gene63906:CDS |
| GGCTGGATAAGATTTGTTGA+AGG | 0.522013 | 5.1:+76042102 | MS.gene63906:CDS |
| ACCTTCTTGTAGGAATATCT+GGG | 0.533637 | 5.1:-76042699 | None:intergenic |
| GGAAGTTCTAACACTTTGCA+AGG | 0.535277 | 5.1:+76040441 | MS.gene63906:CDS |
| CAATCTACCAAGCAATAAGC+AGG | 0.542655 | 5.1:-76042880 | None:intergenic |
| GTCCCAGAGATACACTGGCT+TGG | 0.542830 | 5.1:+76043151 | MS.gene63906:CDS |
| CTCCAAGCCAGTGTATCTCT+GGG | 0.543914 | 5.1:-76043153 | None:intergenic |
| GCCGATAGATATCGTAAGCA+TGG | 0.550009 | 5.1:+76042395 | MS.gene63906:intron |
| GCTTAGGTGCTACCTGCAAA+GGG | 0.553923 | 5.1:+76043357 | MS.gene63906:CDS |
| TAGCATGGTCCACAACTGAC+TGG | 0.568604 | 5.1:-76041306 | None:intergenic |
| CTTAGAATGATGTTGCAGAA+AGG | 0.569117 | 5.1:+76043493 | MS.gene63906:CDS |
| CAGGTACCTTCAACAGTCAA+AGG | 0.571827 | 5.1:-76043226 | None:intergenic |
| AACATAAATAGGAATAGGGT+GGG | 0.574002 | 5.1:-76042243 | None:intergenic |
| CACATATATCATTAATAGCA+TGG | 0.575685 | 5.1:-76041321 | None:intergenic |
| TGCAAAGGGAGGTCCCAGAA+TGG | 0.581411 | 5.1:+76043371 | MS.gene63906:CDS |
| CAACATAAATAGGAATAGGG+TGG | 0.584456 | 5.1:-76042244 | None:intergenic |
| GTTAAAATATCAAAGCCATA+GGG | 0.588504 | 5.1:-76042907 | None:intergenic |
| CAATGCAGACCAGTCAGTTG+TGG | 0.592006 | 5.1:+76041297 | MS.gene63906:intron |
| CAGGTAGCACCTAAGCAACA+TGG | 0.595627 | 5.1:-76043350 | None:intergenic |
| ACCCAGATATTCCTACAAGA+AGG | 0.598583 | 5.1:+76042698 | MS.gene63906:CDS |
| TCCGTGTCCCAGAGATACAC+TGG | 0.607303 | 5.1:+76043146 | MS.gene63906:CDS |
| TACCTTCAACAGTCAAAGGA+AGG | 0.608451 | 5.1:-76043222 | None:intergenic |
| AATCGATCGATGAGGATGAT+CGG | 0.612592 | 5.1:-76040262 | None:intergenic |
| ATGCAATTATGCAGCTTCTG+CGG | 0.616242 | 5.1:+76040397 | MS.gene63906:intron |
| TTACGGAGATGACAATGCAA+TGG | 0.617290 | 5.1:-76042597 | None:intergenic |
| TTGCTCGTTAACCTAGCCAA+CGG | 0.624036 | 5.1:+76040232 | MS.gene63906:CDS |
| GCAGAAAATCTACCACATTG+AGG | 0.624928 | 5.1:-76041369 | None:intergenic |
| GCCAGTGTATCTCTGGGACA+CGG | 0.636009 | 5.1:-76043147 | None:intergenic |
| AAGTATCTATCAGAATCTGA+AGG | 0.637687 | 5.1:-76043181 | None:intergenic |
| GTTAGAACTTCCTTTCCACA+CGG | 0.661186 | 5.1:-76040430 | None:intergenic |
| AAAGGGAGGTCCCAGAATGG+AGG | 0.672484 | 5.1:+76043374 | MS.gene63906:CDS |
| CTTCAACAGTCAAAGGAAGG+AGG | 0.684240 | 5.1:-76043219 | None:intergenic |
| TAGGTGCTACCTGCAAAGGG+AGG | 0.689184 | 5.1:+76043360 | MS.gene63906:CDS |
| CAGTCGCCATAACCTCAATG+TGG | 0.736964 | 5.1:+76041357 | MS.gene63906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATTAGTACATTA+AGG | - | chr5.1:76042183-76042202 | None:intergenic | 10.0% |
| !!! | ATTTTCATTTTATTTTTTGT+AGG | + | chr5.1:76041540-76041559 | MS.gene63906:intron | 10.0% |
| !!! | TTAATTTTATATGAAAAATC+TGG | + | chr5.1:76041630-76041649 | MS.gene63906:intron | 10.0% |
| !!! | TTTTCATATAAAATTAATTC+CGG | - | chr5.1:76041627-76041646 | None:intergenic | 10.0% |
| !! | ATACTATAAAAATCAGATAA+TGG | - | chr5.1:76041466-76041485 | None:intergenic | 15.0% |
| !! | ATTTATGTTGAAGAAATTAA+AGG | + | chr5.1:76042257-76042276 | MS.gene63906:CDS | 15.0% |
| !! | TATTTGTAAGTTTATCAATT+CGG | + | chr5.1:76042957-76042976 | MS.gene63906:intron | 15.0% |
| !! | TTAATTTCTTCAACATAAAT+AGG | - | chr5.1:76042257-76042276 | None:intergenic | 15.0% |
| !!! | TTCTATTTTTAGTTTTAGTT+TGG | + | chr5.1:76041407-76041426 | MS.gene63906:intron | 15.0% |
| !! | AATTAGTAAATATCAGATCA+GGG | - | chr5.1:76041191-76041210 | None:intergenic | 20.0% |
| !! | ATTTAATATTTAGTAGACAG+TGG | - | chr5.1:76042334-76042353 | None:intergenic | 20.0% |
| !! | CATATTTGTTCTAATGAATT+TGG | + | chr5.1:76043286-76043305 | MS.gene63906:intron | 20.0% |
| !! | TAGAAAATTAAATGACTGAA+TGG | - | chr5.1:76041934-76041953 | None:intergenic | 20.0% |
| !!! | ATCAAATTTGTTTCTACTAT+AGG | + | chr5.1:76042070-76042089 | MS.gene63906:intron | 20.0% |
| !!! | ATGTTAATGATTTGTTATGA+AGG | + | chr5.1:76043464-76043483 | MS.gene63906:intron | 20.0% |
| !!! | ATTAATTCTATCTTTTCACA+GGG | + | chr5.1:76042667-76042686 | MS.gene63906:intron | 20.0% |
| !!! | ATTATCAAACACTTTTTTCA+AGG | + | chr5.1:76041971-76041990 | MS.gene63906:intron | 20.0% |
| !!! | CTTTTTGTTTTGTTTTGTTT+TGG | + | chr5.1:76040560-76040579 | MS.gene63906:intron | 20.0% |
| !!! | GTGTTTTCTCAAATTATTAT+CGG | + | chr5.1:76040863-76040882 | MS.gene63906:intron | 20.0% |
| !!! | TATTAATTCTATCTTTTCAC+AGG | + | chr5.1:76042666-76042685 | MS.gene63906:intron | 20.0% |
| !!! | TTTAACTTTACCATGAATTT+TGG | - | chr5.1:76043587-76043606 | None:intergenic | 20.0% |
| ! | AACGAATGAATTGAGTTATT+AGG | - | chr5.1:76040187-76040206 | None:intergenic | 25.0% |
| ! | AAGAATAGGAAGAATCATAA+TGG | - | chr5.1:76041879-76041898 | None:intergenic | 25.0% |
| ! | ACATGAATATCATTAGTTAC+AGG | + | chr5.1:76042990-76043009 | MS.gene63906:intron | 25.0% |
| ! | ATATAATATTACCTCCATTC+TGG | - | chr5.1:76043388-76043407 | None:intergenic | 25.0% |
| ! | ATGTTATTACTGTTCAGATT+AGG | + | chr5.1:76040527-76040546 | MS.gene63906:intron | 25.0% |
| ! | CACATATATCATTAATAGCA+TGG | - | chr5.1:76041324-76041343 | None:intergenic | 25.0% |
| ! | CATGAATATCATTAGTTACA+GGG | + | chr5.1:76042991-76043010 | MS.gene63906:intron | 25.0% |
| ! | CTTCAACATAAATAGGAATA+GGG | - | chr5.1:76042250-76042269 | None:intergenic | 25.0% |
| ! | GAATTAGTAAATATCAGATC+AGG | - | chr5.1:76041192-76041211 | None:intergenic | 25.0% |
| ! | GAATTGAGTTATTAGGTTTA+AGG | - | chr5.1:76040180-76040199 | None:intergenic | 25.0% |
| ! | GCTGAATATTCATTTCAAAT+AGG | + | chr5.1:76041495-76041514 | MS.gene63906:intron | 25.0% |
| ! | GTTAAAATATCAAAGCCATA+GGG | - | chr5.1:76042910-76042929 | None:intergenic | 25.0% |
| ! | GTTATTAGGTTTAAGGAAAT+TGG | - | chr5.1:76040173-76040192 | None:intergenic | 25.0% |
| ! | TAGAAACAAATTTGATCCAT+CGG | - | chr5.1:76042066-76042085 | None:intergenic | 25.0% |
| ! | TATAATATTACCTCCATTCT+GGG | - | chr5.1:76043387-76043406 | None:intergenic | 25.0% |
| ! | TATATACCATCCAAAATTCA+TGG | + | chr5.1:76043574-76043593 | MS.gene63906:CDS | 25.0% |
| ! | TATTGAATCAAAAGAAGCTA+TGG | - | chr5.1:76042638-76042657 | None:intergenic | 25.0% |
| ! | TCTTCAACATAAATAGGAAT+AGG | - | chr5.1:76042251-76042270 | None:intergenic | 25.0% |
| !! | AAGAATGTTAGTTTATGTCA+AGG | - | chr5.1:76041252-76041271 | None:intergenic | 25.0% |
| !! | AGAATGTTAGTTTATGTCAA+GGG | - | chr5.1:76041251-76041270 | None:intergenic | 25.0% |
| !! | TCTTGAAAGATTTGTTTGTA+GGG | + | chr5.1:76041210-76041229 | MS.gene63906:intron | 25.0% |
| !! | TTCTACTATAGGTTAGTTAT+GGG | + | chr5.1:76042081-76042100 | MS.gene63906:intron | 25.0% |
| !! | TTCTTGAAAGATTTGTTTGT+AGG | + | chr5.1:76041209-76041228 | MS.gene63906:intron | 25.0% |
| !! | TTTCTACTATAGGTTAGTTA+TGG | + | chr5.1:76042080-76042099 | MS.gene63906:intron | 25.0% |
| !! | TTTTATGTAATCGAATGTGT+CGG | - | chr5.1:76040839-76040858 | None:intergenic | 25.0% |
| !!! | AAAAGAAGAACCTTTGATTT+TGG | - | chr5.1:76040122-76040141 | None:intergenic | 25.0% |
| !!! | AAAGATACTGGATTTTTAAG+TGG | + | chr5.1:76043025-76043044 | MS.gene63906:intron | 25.0% |
| !!! | ATTTTAACCACTTACAGATT+TGG | + | chr5.1:76042922-76042941 | MS.gene63906:CDS | 25.0% |
| !!! | TAATGATTTGTTATGAAGGT+TGG | + | chr5.1:76043468-76043487 | MS.gene63906:intron | 25.0% |
| AACATAAATAGGAATAGGGT+GGG | - | chr5.1:76042246-76042265 | None:intergenic | 30.0% | |
| AAGTATCTATCAGAATCTGA+AGG | - | chr5.1:76043184-76043203 | None:intergenic | 30.0% | |
| AAGTTTGTGAAAACAACAGA+AGG | - | chr5.1:76041818-76041837 | None:intergenic | 30.0% | |
| AGCATTATATCTAAGGAAAG+TGG | - | chr5.1:76042739-76042758 | None:intergenic | 30.0% | |
| ATATAACTACCACATTCGTA+TGG | - | chr5.1:76042797-76042816 | None:intergenic | 30.0% | |
| ATGAAAATAACGACGAAACA+TGG | - | chr5.1:76041528-76041547 | None:intergenic | 30.0% | |
| CAACAATTATCTCTGTATCA+CGG | + | chr5.1:76040766-76040785 | MS.gene63906:intron | 30.0% | |
| GGTCTTCATAAAATTGCTTA+CGG | - | chr5.1:76042617-76042636 | None:intergenic | 30.0% | |
| GGTTAAAATATCAAAGCCAT+AGG | - | chr5.1:76042911-76042930 | None:intergenic | 30.0% | |
| TAAGATTCTTCATTGTACTC+TGG | + | chr5.1:76041117-76041136 | MS.gene63906:intron | 30.0% | |
| TAGGTTTAAGGAAATTGGAT+TGG | - | chr5.1:76040168-76040187 | None:intergenic | 30.0% | |
| TGTTCAATTAATAAGACCGA+TGG | + | chr5.1:76042047-76042066 | MS.gene63906:intron | 30.0% | |
| ! | AAATTAAAGCCATGTTGCTT+AGG | + | chr5.1:76043341-76043360 | MS.gene63906:CDS | 30.0% |
| ! | AAGATTTGTTTGTAGGGTAA+TGG | + | chr5.1:76041216-76041235 | MS.gene63906:intron | 30.0% |
| ! | AAGCAAATGCTGTATTTTCA+GGG | + | chr5.1:76042453-76042472 | MS.gene63906:intron | 30.0% |
| ! | ACTTTACCATGAATTTTGGA+TGG | - | chr5.1:76043583-76043602 | None:intergenic | 30.0% |
| ! | CTTTTACTCACCAAAATCAA+AGG | + | chr5.1:76040109-76040128 | MS.gene63906:CDS | 30.0% |
| ! | GAATGTTAGTTTATGTCAAG+GGG | - | chr5.1:76041250-76041269 | None:intergenic | 30.0% |
| ! | TAAGCAAATGCTGTATTTTC+AGG | + | chr5.1:76042452-76042471 | MS.gene63906:intron | 30.0% |
| ! | TATGCATTTTGTATCCTAAC+AGG | + | chr5.1:76042824-76042843 | MS.gene63906:intron | 30.0% |
| ! | TGTATCCTAACAGGTTTTTA+CGG | + | chr5.1:76042833-76042852 | MS.gene63906:intron | 30.0% |
| ! | TTAGTTTGGATCTCTTAATC+CGG | + | chr5.1:76041421-76041440 | MS.gene63906:intron | 30.0% |
| ! | TTCTTAGTTCTTACAGTGTT+GGG | - | chr5.1:76042156-76042175 | None:intergenic | 30.0% |
| ! | TTTTATTCACCAAAATCCAC+CGG | - | chr5.1:76041443-76041462 | None:intergenic | 30.0% |
| !!! | TATTTTTTGTAGGTTTCTGC+CGG | + | chr5.1:76041550-76041569 | MS.gene63906:intron | 30.0% |
| AATCTACCACATTGAGGTTA+TGG | - | chr5.1:76041366-76041385 | None:intergenic | 35.0% | |
| ACCTTCTTGTAGGAATATCT+GGG | - | chr5.1:76042702-76042721 | None:intergenic | 35.0% | |
| AGTTAAGCAATGTTAGTCCT+CGG | - | chr5.1:76042372-76042391 | None:intergenic | 35.0% | |
| ATGTGAGACTGTTTAAAAGC+TGG | + | chr5.1:76041163-76041182 | MS.gene63906:intron | 35.0% | |
| CAACATAAATAGGAATAGGG+TGG | - | chr5.1:76042247-76042266 | None:intergenic | 35.0% | |
| CAATGTTCCAAGCAAAGAAT+AGG | - | chr5.1:76041893-76041912 | None:intergenic | 35.0% | |
| CAGACTACGAAAAAGAAACT+CGG | - | chr5.1:76043069-76043088 | None:intergenic | 35.0% | |
| CAGTTGAACAAAAAGACAGA+TGG | - | chr5.1:76043418-76043437 | None:intergenic | 35.0% | |
| CTATTCTTTGCTTGGAACAT+TGG | + | chr5.1:76041891-76041910 | MS.gene63906:intron | 35.0% | |
| CTTAGAATGATGTTGCAGAA+AGG | + | chr5.1:76043493-76043512 | MS.gene63906:CDS | 35.0% | |
| GAAACACATGTTCACAGATT+AGG | + | chr5.1:76040463-76040482 | MS.gene63906:CDS | 35.0% | |
| GAACACATTTGAACACAGAA+TGG | - | chr5.1:76042032-76042051 | None:intergenic | 35.0% | |
| GAGAATTATTCAGAAGCCTT+TGG | + | chr5.1:76041082-76041101 | MS.gene63906:intron | 35.0% | |
| GATGAGATCACACTCAATTA+TGG | + | chr5.1:76041585-76041604 | MS.gene63906:intron | 35.0% | |
| GATTCTTCCTATTCTTTGCT+TGG | + | chr5.1:76041883-76041902 | MS.gene63906:intron | 35.0% | |
| GATTGAATGTAATCACACGT+CGG | - | chr5.1:76040982-76041001 | None:intergenic | 35.0% | |
| GTCAACACGGTAAAATTTGA+AGG | - | chr5.1:76041017-76041036 | None:intergenic | 35.0% | |
| GTTCTCAACATGAAAGATAC+TGG | + | chr5.1:76043013-76043032 | MS.gene63906:intron | 35.0% | |
| TACTCACCTAAAAAGACAGA+TGG | - | chr5.1:76040678-76040697 | None:intergenic | 35.0% | |
| TAGTAGACAGTGGTATTAGA+AGG | - | chr5.1:76042324-76042343 | None:intergenic | 35.0% | |
| TTAGTTGTCGAGAAAGAATC+AGG | + | chr5.1:76042429-76042448 | MS.gene63906:CDS | 35.0% | |
| TTGGATATGTGAAGAGGAAA+AGG | - | chr5.1:76040149-76040168 | None:intergenic | 35.0% | |
| ! | AGCAAATGCTGTATTTTCAG+GGG | + | chr5.1:76042454-76042473 | MS.gene63906:intron | 35.0% |
| ! | ATGCATCCATCTGTCTTTTT+AGG | + | chr5.1:76040669-76040688 | MS.gene63906:CDS | 35.0% |
| ! | ATTGGATTGGATATGTGAAG+AGG | - | chr5.1:76040155-76040174 | None:intergenic | 35.0% |
| ! | CATCTGTCTTTTTGTTCAAC+TGG | + | chr5.1:76043416-76043435 | MS.gene63906:intron | 35.0% |
| ! | GATTTTTGAATCGATCGATG+AGG | - | chr5.1:76040273-76040292 | None:intergenic | 35.0% |
| ! | GTTCTTAGTTCTTACAGTGT+TGG | - | chr5.1:76042157-76042176 | None:intergenic | 35.0% |
| ! | GTTTGTAGGGTAATGGTTTA+AGG | + | chr5.1:76041223-76041242 | MS.gene63906:intron | 35.0% |
| !! | GTATTTTCAGGGGTAAAACA+AGG | + | chr5.1:76042464-76042483 | MS.gene63906:intron | 35.0% |
| !! | TTTTCAAGGCTGATGTTGTT+TGG | + | chr5.1:76041985-76042004 | MS.gene63906:intron | 35.0% |
| !!! | ACATCGACTCTCTTTTCAAT+AGG | - | chr5.1:76042526-76042545 | None:intergenic | 35.0% |
| !!! | ATTTTTTGTAGGTTTCTGCC+GGG | + | chr5.1:76041551-76041570 | MS.gene63906:intron | 35.0% |
| !!! | GATTTTTTGCACCTTCTTGT+AGG | - | chr5.1:76042712-76042731 | None:intergenic | 35.0% |
| AAATGACTGAATGGCACATG+TGG | - | chr5.1:76041925-76041944 | None:intergenic | 40.0% | |
| AATCGATCGATGAGGATGAT+CGG | - | chr5.1:76040265-76040284 | None:intergenic | 40.0% | |
| ACAAAAGGAAAGCTGGCATA+TGG | - | chr5.1:76042768-76042787 | None:intergenic | 40.0% | |
| ACCCAGATATTCCTACAAGA+AGG | + | chr5.1:76042698-76042717 | MS.gene63906:CDS | 40.0% | |
| ACCTGCTGATATTAGTTGTC+CGG | + | chr5.1:76043244-76043263 | MS.gene63906:intron | 40.0% | |
| AGAAGCCGTAAAAACCTGTT+AGG | - | chr5.1:76042841-76042860 | None:intergenic | 40.0% | |
| ATAAAAAGTGACAAGAGCCG+AGG | + | chr5.1:76042352-76042371 | MS.gene63906:intron | 40.0% | |
| ATGAAGCACAAACACAGACA+CGG | - | chr5.1:76040908-76040927 | None:intergenic | 40.0% | |
| ATGCAATTATGCAGCTTCTG+CGG | + | chr5.1:76040397-76040416 | MS.gene63906:intron | 40.0% | |
| CAATCTACCAAGCAATAAGC+AGG | - | chr5.1:76042883-76042902 | None:intergenic | 40.0% | |
| CACCTTCTTGTAGGAATATC+TGG | - | chr5.1:76042703-76042722 | None:intergenic | 40.0% | |
| CAGAACTCTTAGATGCATCA+GGG | - | chr5.1:76041784-76041803 | None:intergenic | 40.0% | |
| CATTGAGCCAAATCTGTAAG+TGG | - | chr5.1:76042932-76042951 | None:intergenic | 40.0% | |
| CTTAGCAAGATTCTGACCAA+AGG | - | chr5.1:76041101-76041120 | None:intergenic | 40.0% | |
| GCAGAAAATCTACCACATTG+AGG | - | chr5.1:76041372-76041391 | None:intergenic | 40.0% | |
| GCCATGCTTACGATATCTAT+CGG | - | chr5.1:76042399-76042418 | None:intergenic | 40.0% | |
| GCTTGGCAGCATTATATCTA+AGG | - | chr5.1:76042746-76042765 | None:intergenic | 40.0% | |
| GTACTCTTTCAGATTCCAAC+TGG | + | chr5.1:76040296-76040315 | MS.gene63906:CDS | 40.0% | |
| GTCAGAATTTCGCAACATGA+TGG | + | chr5.1:76040698-76040717 | MS.gene63906:intron | 40.0% | |
| GTTAGAACTTCCTTTCCACA+CGG | - | chr5.1:76040433-76040452 | None:intergenic | 40.0% | |
| TACCTTCAACAGTCAAAGGA+AGG | - | chr5.1:76043225-76043244 | None:intergenic | 40.0% | |
| TCAGAACTCTTAGATGCATC+AGG | - | chr5.1:76041785-76041804 | None:intergenic | 40.0% | |
| TCTAGCAAATGGCTTATGAC+AGG | + | chr5.1:76043116-76043135 | MS.gene63906:intron | 40.0% | |
| TCTTTGCTTGGAACATTGGT+TGG | + | chr5.1:76041895-76041914 | MS.gene63906:intron | 40.0% | |
| TTACGGAGATGACAATGCAA+TGG | - | chr5.1:76042600-76042619 | None:intergenic | 40.0% | |
| TTAGAAGAGAACGAACCAGT+TGG | - | chr5.1:76040314-76040333 | None:intergenic | 40.0% | |
| TTATCGGCGTCAATCATAAC+CGG | + | chr5.1:76040879-76040898 | MS.gene63906:intron | 40.0% | |
| TTCCTTTCCACACGGAAAAT+CGG | - | chr5.1:76040425-76040444 | None:intergenic | 40.0% | |
| TTCGTATGGTGCAGAACAAA+AGG | - | chr5.1:76042783-76042802 | None:intergenic | 40.0% | |
| TTGACACAGACATGTCAACA+CGG | - | chr5.1:76041030-76041049 | None:intergenic | 40.0% | |
| TTGGTAGATTGTGATCCCTA+TGG | + | chr5.1:76042892-76042911 | MS.gene63906:CDS | 40.0% | |
| ! | AATGGTTTGCATTGCAGAAC+TGG | - | chr5.1:76042582-76042601 | None:intergenic | 40.0% |
| ! | ACTATAGGTTAGTTATGGGC+TGG | + | chr5.1:76042085-76042104 | MS.gene63906:intron | 40.0% |
| ! | ACTGGTCATTTGCTAATCTC+TGG | - | chr5.1:76042564-76042583 | None:intergenic | 40.0% |
| ! | CAACTATGCAAATCTGAAGC+CGG | - | chr5.1:76043266-76043285 | None:intergenic | 40.0% |
| ! | CACTTACAGATTTGGCTCAA+TGG | + | chr5.1:76042930-76042949 | MS.gene63906:CDS | 40.0% |
| ! | CTTTGCTTGGAACATTGGTT+GGG | + | chr5.1:76041896-76041915 | MS.gene63906:intron | 40.0% |
| ! | GGAAGTTCTAACACTTTGCA+AGG | + | chr5.1:76040441-76040460 | MS.gene63906:CDS | 40.0% |
| ! | TAACAGGTTTTTACGGCTTC+TGG | + | chr5.1:76042840-76042859 | MS.gene63906:intron | 40.0% |
| ! | TCTATCTTTTCACAGGGAAG+AGG | + | chr5.1:76042673-76042692 | MS.gene63906:intron | 40.0% |
| ! | TGGAATATGCACTTTTCTGC+CGG | + | chr5.1:76041605-76041624 | MS.gene63906:intron | 40.0% |
| !! | GGCTGGATAAGATTTGTTGA+AGG | + | chr5.1:76042102-76042121 | MS.gene63906:CDS | 40.0% |
| !! | TCGCAACATGATGGATCATA+TGG | + | chr5.1:76040707-76040726 | MS.gene63906:intron | 40.0% |
| !! | TCTCTTAATCCGGTGGATTT+TGG | + | chr5.1:76041431-76041450 | MS.gene63906:intron | 40.0% |
| !!! | CTGACATTTAGCTTTTCTGC+AGG | + | chr5.1:76042220-76042239 | MS.gene63906:intron | 40.0% |
| ACTGGCGATAAGATGCATCA+GGG | - | chr5.1:76041743-76041762 | None:intergenic | 45.0% | |
| CAGGTACCTTCAACAGTCAA+AGG | - | chr5.1:76043229-76043248 | None:intergenic | 45.0% | |
| CTCCTTCCTTTGACTGTTGA+AGG | + | chr5.1:76043220-76043239 | MS.gene63906:CDS | 45.0% | |
| CTTCAACAGTCAAAGGAAGG+AGG | - | chr5.1:76043222-76043241 | None:intergenic | 45.0% | |
| CTTCAGATTGAAGCCATGTC+TGG | + | chr5.1:76040930-76040949 | MS.gene63906:intron | 45.0% | |
| GCACATACCTGCTTATTGCT+TGG | + | chr5.1:76042873-76042892 | MS.gene63906:CDS | 45.0% | |
| GCCGATAGATATCGTAAGCA+TGG | + | chr5.1:76042395-76042414 | MS.gene63906:intron | 45.0% | |
| GCTAGAAGAACAGCGGAAAA+TGG | - | chr5.1:76043102-76043121 | None:intergenic | 45.0% | |
| GGCGGGAAAGAGAATGAAAT+TGG | + | chr5.1:76040060-76040079 | MS.gene63906:CDS | 45.0% | |
| GTCGAGTCTGTATCTGTCTT+GGG | + | chr5.1:76041051-76041070 | MS.gene63906:intron | 45.0% | |
| GTGCAGAACAAAAGGAAAGC+TGG | - | chr5.1:76042775-76042794 | None:intergenic | 45.0% | |
| GTTTGGATCTCTTAATCCGG+TGG | + | chr5.1:76041424-76041443 | MS.gene63906:intron | 45.0% | |
| TCCGCTGTTCTTCTAGCAAA+TGG | + | chr5.1:76043105-76043124 | MS.gene63906:intron | 45.0% | |
| TCGAGTCTGTATCTGTCTTG+GGG | + | chr5.1:76041052-76041071 | MS.gene63906:intron | 45.0% | |
| TCTCATCAAGTACCCATTCC+CGG | - | chr5.1:76041572-76041591 | None:intergenic | 45.0% | |
| TGTCGAGTCTGTATCTGTCT+TGG | + | chr5.1:76041050-76041069 | MS.gene63906:intron | 45.0% | |
| TGTTCTGCACCATACGAATG+TGG | + | chr5.1:76042785-76042804 | MS.gene63906:intron | 45.0% | |
| TTGCTCGTTAACCTAGCCAA+CGG | + | chr5.1:76040232-76040251 | MS.gene63906:CDS | 45.0% | |
| ! | GATGATCGGTGATTTTCCGT+TGG | - | chr5.1:76040251-76040270 | None:intergenic | 45.0% |
| ! | GCCATTTGCTAGAAGAACAG+CGG | - | chr5.1:76043109-76043128 | None:intergenic | 45.0% |
| ! | TTCCGATTTTCCGTGTGGAA+AGG | + | chr5.1:76040420-76040439 | MS.gene63906:CDS | 45.0% |
| ACAAACACAGACACGGACAC+CGG | - | chr5.1:76040901-76040920 | None:intergenic | 50.0% | |
| AGGAAAGCTGGCATATGGCT+TGG | - | chr5.1:76042763-76042782 | None:intergenic | 50.0% | |
| CAATGCAGACCAGTCAGTTG+TGG | + | chr5.1:76041297-76041316 | MS.gene63906:intron | 50.0% | |
| CACTGGCGATAAGATGCATC+AGG | - | chr5.1:76041744-76041763 | None:intergenic | 50.0% | |
| CAGGTAGCACCTAAGCAACA+TGG | - | chr5.1:76043353-76043372 | None:intergenic | 50.0% | |
| CAGTCGCCATAACCTCAATG+TGG | + | chr5.1:76041357-76041376 | MS.gene63906:CDS | 50.0% | |
| CTCCAAGCCAGTGTATCTCT+GGG | - | chr5.1:76043156-76043175 | None:intergenic | 50.0% | |
| GATAAGATGCATCAGGGCCA+GGG | - | chr5.1:76041737-76041756 | None:intergenic | 50.0% | |
| GCCGGACAACTAATATCAGC+AGG | - | chr5.1:76043248-76043267 | None:intergenic | 50.0% | |
| TAGCATGGTCCACAACTGAC+TGG | - | chr5.1:76041309-76041328 | None:intergenic | 50.0% | |
| TCTTAGATGCATCAGGGCCA+GGG | - | chr5.1:76041778-76041797 | None:intergenic | 50.0% | |
| TGTAGGTTTCTGCCGGGAAT+GGG | + | chr5.1:76041557-76041576 | MS.gene63906:intron | 50.0% | |
| TTGAAGCCATGTCTGGTGTC+TGG | + | chr5.1:76040937-76040956 | MS.gene63906:intron | 50.0% | |
| TTGTAGGTTTCTGCCGGGAA+TGG | + | chr5.1:76041556-76041575 | MS.gene63906:intron | 50.0% | |
| ! | GCTTAGGTGCTACCTGCAAA+GGG | + | chr5.1:76043357-76043376 | MS.gene63906:CDS | 50.0% |
| ! | TGCTTAGGTGCTACCTGCAA+AGG | + | chr5.1:76043356-76043375 | MS.gene63906:CDS | 50.0% |
| !! | AAAGGAAGGAGGCACTGCTT+TGG | - | chr5.1:76043211-76043230 | None:intergenic | 50.0% |
| !! | TCGGTGATTTTCCGTTGGCT+AGG | - | chr5.1:76040246-76040265 | None:intergenic | 50.0% |
| AAAGGGAGGTCCCAGAATGG+AGG | + | chr5.1:76043374-76043393 | MS.gene63906:CDS | 55.0% | |
| CGATAAGATGCATCAGGGCC+AGG | - | chr5.1:76041738-76041757 | None:intergenic | 55.0% | |
| CTCTTAGATGCATCAGGGCC+AGG | - | chr5.1:76041779-76041798 | None:intergenic | 55.0% | |
| GATGTGCCAGACACCAGACA+TGG | - | chr5.1:76040946-76040965 | None:intergenic | 55.0% | |
| GCTCCAAGCCAGTGTATCTC+TGG | - | chr5.1:76043157-76043176 | None:intergenic | 55.0% | |
| GTCTGGTGTCTGGCACATCT+CGG | + | chr5.1:76040947-76040966 | MS.gene63906:intron | 55.0% | |
| TATGGCGACTGCACTGCATC+AGG | - | chr5.1:76041348-76041367 | None:intergenic | 55.0% | |
| TCCGTGTCCCAGAGATACAC+TGG | + | chr5.1:76043146-76043165 | MS.gene63906:CDS | 55.0% | |
| TGCAAAGGGAGGTCCCAGAA+TGG | + | chr5.1:76043371-76043390 | MS.gene63906:CDS | 55.0% | |
| ! | GTCCCAGAGATACACTGGCT+TGG | + | chr5.1:76043151-76043170 | MS.gene63906:CDS | 55.0% |
| ! | TAGGTGCTACCTGCAAAGGG+AGG | + | chr5.1:76043360-76043379 | MS.gene63906:CDS | 55.0% |
| ! | TGCGGTTCCGATTTTCCGTG+TGG | + | chr5.1:76040415-76040434 | MS.gene63906:CDS | 55.0% |
| ! | TGTCTGGCACATCTCGGTGT+TGG | + | chr5.1:76040953-76040972 | MS.gene63906:intron | 55.0% |
| !! | ATTCTGGGACCTCCCTTTGC+AGG | - | chr5.1:76043372-76043391 | None:intergenic | 55.0% |
| !! | GCCAGTGTATCTCTGGGACA+CGG | - | chr5.1:76043150-76043169 | None:intergenic | 55.0% |
| CCAGGGATTCGCAGCATCAC+TGG | - | chr5.1:76041720-76041739 | None:intergenic | 60.0% | |
| CCAGTGATGCTGCGAATCCC+TGG | + | chr5.1:76041717-76041736 | MS.gene63906:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76040058 | 76043612 | 76040058 | ID=MS.gene63906 |
| chr5.1 | mRNA | 76040058 | 76043612 | 76040058 | ID=MS.gene63906.t1;Parent=MS.gene63906 |
| chr5.1 | exon | 76040058 | 76040130 | 76040058 | ID=MS.gene63906.t1.exon1;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76040058 | 76040130 | 76040058 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76040218 | 76040317 | 76040218 | ID=MS.gene63906.t1.exon2;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76040218 | 76040317 | 76040218 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76040411 | 76040484 | 76040411 | ID=MS.gene63906.t1.exon3;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76040411 | 76040484 | 76040411 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76040589 | 76040690 | 76040589 | ID=MS.gene63906.t1.exon4;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76040589 | 76040690 | 76040589 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76041305 | 76041378 | 76041305 | ID=MS.gene63906.t1.exon5;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76041305 | 76041378 | 76041305 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76041562 | 76041578 | 76041562 | ID=MS.gene63906.t1.exon6;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76041562 | 76041578 | 76041562 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042092 | 76042161 | 76042092 | ID=MS.gene63906.t1.exon7;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042092 | 76042161 | 76042092 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042242 | 76042278 | 76042242 | ID=MS.gene63906.t1.exon8;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042242 | 76042278 | 76042242 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042403 | 76042450 | 76042403 | ID=MS.gene63906.t1.exon9;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042403 | 76042450 | 76042403 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042557 | 76042615 | 76042557 | ID=MS.gene63906.t1.exon10;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042557 | 76042615 | 76042557 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042688 | 76042719 | 76042688 | ID=MS.gene63906.t1.exon11;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042688 | 76042719 | 76042688 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76042846 | 76042951 | 76042846 | ID=MS.gene63906.t1.exon12;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76042846 | 76042951 | 76042846 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76043121 | 76043241 | 76043121 | ID=MS.gene63906.t1.exon13;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76043121 | 76043241 | 76043121 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76043332 | 76043395 | 76043332 | ID=MS.gene63906.t1.exon14;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76043332 | 76043395 | 76043332 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| chr5.1 | exon | 76043486 | 76043612 | 76043486 | ID=MS.gene63906.t1.exon15;Parent=MS.gene63906.t1 |
| chr5.1 | CDS | 76043486 | 76043612 | 76043486 | ID=cds.MS.gene63906.t1;Parent=MS.gene63906.t1 |
| Gene Sequence |
| Protein sequence |
