Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63954.t1 | XP_013442451.1 | 97.2 | 247 | 7 | 0 | 1 | 247 | 158 | 404 | 7.60E-131 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63954.t1 | Q9LF50 | 69.1 | 243 | 75 | 0 | 2 | 244 | 172 | 414 | 1.5e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63954.t1 | A0A072TH01 | 97.2 | 247 | 7 | 0 | 1 | 247 | 158 | 404 | 5.5e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050625 | MS.gene63954 | 0.811595 | 6.47E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene63954 | 0.804894 | 1.74E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene63954 | 0.845559 | 3.77E-59 | -1.69E-46 |
| MS.gene052982 | MS.gene63954 | 0.841862 | 3.67E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene63954 | 0.827145 | 1.84E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63954.t1 | MTR_0172s0020 | 97.166 | 247 | 7 | 0 | 1 | 247 | 158 | 404 | 1.12e-173 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63954.t1 | AT5G17520 | 69.136 | 243 | 75 | 0 | 2 | 244 | 172 | 414 | 2.25e-126 | 365 |
| MS.gene63954.t1 | AT5G17520 | 69.136 | 243 | 75 | 0 | 2 | 244 | 110 | 352 | 3.25e-126 | 362 |
| MS.gene63954.t1 | AT5G17523 | 52.459 | 61 | 29 | 0 | 2 | 62 | 172 | 232 | 3.15e-13 | 67.8 |
Find 58 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGACAGGAATGGCTTTC+TGG | 0.164679 | 4.1:-56269943 | MS.gene63954:intron |
| ATGCTGGAATCTGGCGCTTT+TGG | 0.199585 | 4.1:-56272351 | MS.gene63954:CDS |
| AAATTTGTTGGTGGAATATC+TGG | 0.287335 | 4.1:-56271597 | MS.gene63954:CDS |
| TGGGAAGATTTCATTACAAT+TGG | 0.310319 | 4.1:-56272331 | MS.gene63954:CDS |
| CAAGATGCTGTTAGGTAGAT+AGG | 0.317684 | 4.1:+56272167 | None:intergenic |
| GCTACCATATTCTATGGATA+TGG | 0.332128 | 4.1:-56270721 | MS.gene63954:CDS |
| GCTTACTAAATGCTGGAATC+TGG | 0.333611 | 4.1:-56272360 | MS.gene63954:CDS |
| TATCAACAAGGAATTCTTCT+TGG | 0.335994 | 4.1:-56270569 | MS.gene63954:CDS |
| TCGTGGGCTACCATATTCTA+TGG | 0.338875 | 4.1:-56270727 | MS.gene63954:CDS |
| GGGAAGATTTCATTACAATT+GGG | 0.361219 | 4.1:-56272330 | MS.gene63954:CDS |
| CTTGGCAGCAACTGTCGGTT+TGG | 0.363762 | 4.1:-56270551 | MS.gene63954:CDS |
| CTGAATTTCATGAATTACTT+TGG | 0.367581 | 4.1:-56272382 | MS.gene63954:CDS |
| ATTCCCATATCCATAGAATA+TGG | 0.373480 | 4.1:+56270717 | None:intergenic |
| GACAAGCCTTTCATGTTCTC+AGG | 0.395948 | 4.1:+56271406 | None:intergenic |
| GCATGGTTACAGTTCACCTT+TGG | 0.396273 | 4.1:-56269906 | MS.gene63954:CDS |
| ATTTACTTACAGGCAAGAAC+TGG | 0.402272 | 4.1:-56271642 | MS.gene63954:intron |
| TTGCTTGCGATGCTTGGAAA+TGG | 0.404062 | 4.1:-56271370 | MS.gene63954:CDS |
| TACTTTGGCTTACTAAATGC+TGG | 0.410058 | 4.1:-56272367 | MS.gene63954:CDS |
| CAACTGTCGGTTTGGTCTCA+TGG | 0.412077 | 4.1:-56270543 | MS.gene63954:CDS |
| TTGCGTTCACTTACAGGAAC+AGG | 0.427574 | 4.1:+56270686 | None:intergenic |
| GAGAAAGGTGTTAAATTTGT+TGG | 0.432102 | 4.1:-56271609 | MS.gene63954:CDS |
| TCTATGTTGCTTGCGATGCT+TGG | 0.432187 | 4.1:-56271376 | MS.gene63954:CDS |
| GCACCAGGCAAGATGCTGTT+AGG | 0.438842 | 4.1:+56272159 | None:intergenic |
| CATTGTTCAGCTGGCTTTAG+CGG | 0.441336 | 4.1:-56272464 | MS.gene63954:CDS |
| AACTATGATTGTAGGTTCAC+TGG | 0.442842 | 4.1:-56270754 | MS.gene63954:intron |
| CTCAATCCTGAGAACATGAA+AGG | 0.450928 | 4.1:-56271412 | MS.gene63954:CDS |
| ATATGTGGTCATTGTTCAGC+TGG | 0.455036 | 4.1:-56272473 | MS.gene63954:CDS |
| AACGTTTACCATCTGAGAAA+CGG | 0.456160 | 4.1:+56271542 | None:intergenic |
| ACGTTTACCATCTGAGAAAC+GGG | 0.463253 | 4.1:+56271543 | None:intergenic |
| CTACCATATTCTATGGATAT+GGG | 0.466317 | 4.1:-56270720 | MS.gene63954:CDS |
| TTCTTCTTGGCAGCAACTGT+CGG | 0.491989 | 4.1:-56270556 | MS.gene63954:CDS |
| TGGTGTAATTTCAACATATG+TGG | 0.495319 | 4.1:-56272488 | MS.gene63954:CDS |
| ACTTCAGTGGTTGTAGTGTC+AGG | 0.495916 | 4.1:-56272412 | MS.gene63954:CDS |
| AAGATGCTGTTAGGTAGATA+GGG | 0.497941 | 4.1:+56272168 | None:intergenic |
| GACAGCTATGACAAAGGAAA+TGG | 0.500671 | 4.1:+56272137 | None:intergenic |
| ACTGGAAAACTTTCTGAGAA+AGG | 0.503327 | 4.1:-56271624 | MS.gene63954:CDS |
| CTACCTAACAGCATCTTGCC+TGG | 0.509297 | 4.1:-56272162 | MS.gene63954:CDS |
| GGAAGATTTCATTACAATTG+GGG | 0.526329 | 4.1:-56272329 | MS.gene63954:CDS |
| AGCTGTCGTGGCTGTTACCA+TGG | 0.536823 | 4.1:-56272121 | MS.gene63954:intron |
| AAAGGTGTTAAATTTGTTGG+TGG | 0.539268 | 4.1:-56271606 | MS.gene63954:CDS |
| GTGGATGCCCGTTTCTCAGA+TGG | 0.539333 | 4.1:-56271550 | MS.gene63954:intron |
| ATGACAAAGGAAATGGCACC+AGG | 0.553392 | 4.1:+56272144 | None:intergenic |
| AGCCACGACAGCTATGACAA+AGG | 0.558295 | 4.1:+56272131 | None:intergenic |
| GTCGGTTTGGTCTCATGGAT+AGG | 0.558576 | 4.1:-56270538 | MS.gene63954:intron |
| TAGGTTCACTGGTTCATCGT+GGG | 0.561359 | 4.1:-56270743 | MS.gene63954:CDS |
| TTCCTTTGTCATAGCTGTCG+TGG | 0.561699 | 4.1:-56272133 | MS.gene63954:CDS |
| CAGTTTAAACATTATCAACA+AGG | 0.561755 | 4.1:-56270581 | MS.gene63954:CDS |
| CAATCTGGATACAGATAATG+TGG | 0.583147 | 4.1:-56272203 | MS.gene63954:intron |
| TATTCATTCGTGATTTCATG+TGG | 0.586978 | 4.1:-56271327 | MS.gene63954:intron |
| GCAATGGTGGTGCAGACACT+TGG | 0.596607 | 4.1:-56272508 | MS.gene63954:CDS |
| CTGCTACATTACTCTTCATG+TGG | 0.600770 | 4.1:-56271569 | MS.gene63954:CDS |
| TGGAGAGACAGTGTAGTGCA+TGG | 0.624152 | 4.1:-56269923 | MS.gene63954:CDS |
| GAAGATTTCATTACAATTGG+GGG | 0.629398 | 4.1:-56272328 | MS.gene63954:CDS |
| AGATGCTGTTAGGTAGATAG+GGG | 0.646554 | 4.1:+56272169 | None:intergenic |
| TTGTTGGTGGAATATCTGGA+TGG | 0.651433 | 4.1:-56271593 | MS.gene63954:CDS |
| GTAGGTTCACTGGTTCATCG+TGG | 0.663007 | 4.1:-56270744 | MS.gene63954:intron |
| AAGTCACGTAAAGAAGCCAA+AGG | 0.668827 | 4.1:+56269890 | None:intergenic |
| TCACGAATGAATAAAGCACG+TGG | 0.695307 | 4.1:+56271337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCAATTTAAAAAATTTAT+GGG | - | chr4.1:56271401-56271420 | MS.gene63954:CDS | 10.0% |
| !! | AAAGATGTTATATATGAAAT+TGG | - | chr4.1:56272154-56272173 | MS.gene63954:CDS | 15.0% |
| !! | AATAATCAAATATAACCTAA+AGG | + | chr4.1:56270292-56270311 | None:intergenic | 15.0% |
| !! | GGTTCAATTTAAAAAATTTA+TGG | - | chr4.1:56271400-56271419 | MS.gene63954:CDS | 15.0% |
| !! | TAAAAGTAGTATATAACATT+TGG | - | chr4.1:56272227-56272246 | MS.gene63954:intron | 15.0% |
| !!! | ATATATGATGAATATTTTTG+TGG | - | chr4.1:56270854-56270873 | MS.gene63954:intron | 15.0% |
| !!! | GTATTTTATTACTAGTATAA+AGG | + | chr4.1:56272188-56272207 | None:intergenic | 15.0% |
| !! | AAAAAAACTAATCTACAACA+AGG | + | chr4.1:56271254-56271273 | None:intergenic | 20.0% |
| !! | AAGTACTTAAATGAAAATTC+AGG | + | chr4.1:56270541-56270560 | None:intergenic | 20.0% |
| !! | CACTAGAAAAAACAAAAAAT+GGG | + | chr4.1:56270931-56270950 | None:intergenic | 20.0% |
| !! | CTAATAACATATAACAATCT+GGG | + | chr4.1:56270478-56270497 | None:intergenic | 20.0% |
| !! | TTAAGTTATGTGTTTAACAT+TGG | + | chr4.1:56270511-56270530 | None:intergenic | 20.0% |
| !! | TTTCTGTTGAATATTTGATT+TGG | - | chr4.1:56271971-56271990 | MS.gene63954:intron | 20.0% |
| !!! | CATTTTTATGAAATTATGAC+AGG | - | chr4.1:56272417-56272436 | MS.gene63954:CDS | 20.0% |
| !!! | TTTCATTTTCATTTACTTAC+AGG | - | chr4.1:56270721-56270740 | MS.gene63954:CDS | 20.0% |
| ! | AAAAAAAATGATTGCGTAAG+AGG | + | chr4.1:56271865-56271884 | None:intergenic | 25.0% |
| ! | ACAGTAATATGTAGAAAATG+AGG | - | chr4.1:56271349-56271368 | MS.gene63954:CDS | 25.0% |
| ! | ACCTACAATCATAGTTAAAT+CGG | + | chr4.1:56271615-56271634 | None:intergenic | 25.0% |
| ! | CAGTTTAAACATTATCAACA+AGG | - | chr4.1:56271792-56271811 | MS.gene63954:intron | 25.0% |
| ! | CCACTAGAAAAAACAAAAAA+TGG | + | chr4.1:56270932-56270951 | None:intergenic | 25.0% |
| ! | CCATGAATAGTTTCTTAATT+AGG | - | chr4.1:56272357-56272376 | MS.gene63954:CDS | 25.0% |
| ! | CCTAATTAAGAAACTATTCA+TGG | + | chr4.1:56272360-56272379 | None:intergenic | 25.0% |
| ! | CTGAATTTCATGAATTACTT+TGG | - | chr4.1:56269991-56270010 | MS.gene63954:intron | 25.0% |
| ! | GCTAATAACATATAACAATC+TGG | + | chr4.1:56270479-56270498 | None:intergenic | 25.0% |
| ! | GTAATAAAATACTGCTGAAA+TGG | - | chr4.1:56272196-56272215 | MS.gene63954:intron | 25.0% |
| ! | GTTAACTAAACCAAGAAATT+TGG | - | chr4.1:56270636-56270655 | MS.gene63954:intron | 25.0% |
| ! | TGTTTAACATTGGTATGATA+GGG | + | chr4.1:56270501-56270520 | None:intergenic | 25.0% |
| ! | TTATGAAATTATGACAGGAA+TGG | - | chr4.1:56272422-56272441 | MS.gene63954:CDS | 25.0% |
| !! | AATTTTACTAATACTAGGCT+GGG | + | chr4.1:56270109-56270128 | None:intergenic | 25.0% |
| !! | CGTCTAATTTTACTAATACT+AGG | + | chr4.1:56270114-56270133 | None:intergenic | 25.0% |
| !! | CTTTAAAGACTTTAGATAGT+AGG | - | chr4.1:56272279-56272298 | MS.gene63954:intron | 25.0% |
| !! | CTTTAGATAGTAGGTTTTTA+TGG | - | chr4.1:56272288-56272307 | MS.gene63954:intron | 25.0% |
| !! | GTAATCTTCTTATTTCCTTT+AGG | - | chr4.1:56270274-56270293 | MS.gene63954:intron | 25.0% |
| !! | TAATTTTACTAATACTAGGC+TGG | + | chr4.1:56270110-56270129 | None:intergenic | 25.0% |
| !!! | CCATTTTTTGTTTTTTCTAG+TGG | - | chr4.1:56270929-56270948 | MS.gene63954:intron | 25.0% |
| !!! | CTTGTTGATAATGTTTAAAC+TGG | + | chr4.1:56271794-56271813 | None:intergenic | 25.0% |
| !!! | GAATTCATTTTGACATTTTG+AGG | + | chr4.1:56270445-56270464 | None:intergenic | 25.0% |
| !!! | TAAGTTTGTTGTAGAATAGT+TGG | - | chr4.1:56271324-56271343 | MS.gene63954:intron | 25.0% |
| AACAAGGATTTAACCATAAC+GGG | + | chr4.1:56271238-56271257 | None:intergenic | 30.0% | |
| AAGGAAAACACTATTACTTG+AGG | + | chr4.1:56270084-56270103 | None:intergenic | 30.0% | |
| ACATGGAATTCCAAATTTCT+TGG | + | chr4.1:56270649-56270668 | None:intergenic | 30.0% | |
| ACTGAAGTTGCTAAAAAGTA+CGG | + | chr4.1:56269949-56269968 | None:intergenic | 30.0% | |
| AGGAAATAAGAAGATTACCA+TGG | + | chr4.1:56270272-56270291 | None:intergenic | 30.0% | |
| ATAACATATAACAATCTGGG+TGG | + | chr4.1:56270475-56270494 | None:intergenic | 30.0% | |
| ATTATTCAAAACCGACACTT+CGG | + | chr4.1:56271907-56271926 | None:intergenic | 30.0% | |
| ATTCCCATATCCATAGAATA+TGG | + | chr4.1:56271659-56271678 | None:intergenic | 30.0% | |
| CAACAAGGATTTAACCATAA+CGG | + | chr4.1:56271239-56271258 | None:intergenic | 30.0% | |
| CTACCATATTCTATGGATAT+GGG | - | chr4.1:56271653-56271672 | MS.gene63954:intron | 30.0% | |
| CTGTATCCAGATTGTAAATT+GGG | + | chr4.1:56270164-56270183 | None:intergenic | 30.0% | |
| GAAGATTTCATTACAATTGG+GGG | - | chr4.1:56270045-56270064 | MS.gene63954:intron | 30.0% | |
| GGAAGATTTCATTACAATTG+GGG | - | chr4.1:56270044-56270063 | MS.gene63954:intron | 30.0% | |
| GGGAAGATTTCATTACAATT+GGG | - | chr4.1:56270043-56270062 | MS.gene63954:intron | 30.0% | |
| GGTCATAAGAAAAATGCATA+GGG | + | chr4.1:56270910-56270929 | None:intergenic | 30.0% | |
| GTCATAAGAAAAATGCATAG+GGG | + | chr4.1:56270909-56270928 | None:intergenic | 30.0% | |
| GTGTTTAACATTGGTATGAT+AGG | + | chr4.1:56270502-56270521 | None:intergenic | 30.0% | |
| TAACATATAACAATCTGGGT+GGG | + | chr4.1:56270474-56270493 | None:intergenic | 30.0% | |
| TAGGAATCCTTAAAGAGTTA+GGG | - | chr4.1:56272376-56272395 | MS.gene63954:CDS | 30.0% | |
| TATCAACAAGGAATTCTTCT+TGG | - | chr4.1:56271804-56271823 | MS.gene63954:intron | 30.0% | |
| TATTCATTCGTGATTTCATG+TGG | - | chr4.1:56271046-56271065 | MS.gene63954:intron | 30.0% | |
| TCTGTATCCAGATTGTAAAT+TGG | + | chr4.1:56270165-56270184 | None:intergenic | 30.0% | |
| TGGGAAGATTTCATTACAAT+TGG | - | chr4.1:56270042-56270061 | MS.gene63954:intron | 30.0% | |
| TGGTGTAATTTCAACATATG+TGG | - | chr4.1:56269885-56269904 | MS.gene63954:CDS | 30.0% | |
| TGTCTTCACAATCAATTTGT+AGG | - | chr4.1:56272041-56272060 | MS.gene63954:intron | 30.0% | |
| TTAGGAATCCTTAAAGAGTT+AGG | - | chr4.1:56272375-56272394 | MS.gene63954:CDS | 30.0% | |
| TTGTCAAGTTAGTCGTTATA+AGG | - | chr4.1:56272100-56272119 | MS.gene63954:intron | 30.0% | |
| ! | ACCGATTTAACTATGATTGT+AGG | - | chr4.1:56271611-56271630 | MS.gene63954:CDS | 30.0% |
| ! | TTATTTCTCAGAACTTAGTC+CGG | - | chr4.1:56270307-56270326 | MS.gene63954:intron | 30.0% |
| !! | AAAGGTGTTAAATTTGTTGG+TGG | - | chr4.1:56270767-56270786 | MS.gene63954:intron | 30.0% |
| !! | AAATTTGTTGGTGGAATATC+TGG | - | chr4.1:56270776-56270795 | MS.gene63954:intron | 30.0% |
| !! | ACCAATTAAAAGTACCTCTT+AGG | + | chr4.1:56272012-56272031 | None:intergenic | 30.0% |
| !! | GAGAAAGGTGTTAAATTTGT+TGG | - | chr4.1:56270764-56270783 | MS.gene63954:intron | 30.0% |
| !! | TCTTTACGTGACTTAGTTTT+TGG | - | chr4.1:56272492-56272511 | MS.gene63954:CDS | 30.0% |
| !!! | ACCTAAGAGGTACTTTTAAT+TGG | - | chr4.1:56272008-56272027 | MS.gene63954:intron | 30.0% |
| AAATCAATAGCTGACCTAAG+AGG | - | chr4.1:56271995-56272014 | MS.gene63954:intron | 35.0% | |
| AAATGCTAACGAGTGTCTTA+AGG | - | chr4.1:56272251-56272270 | MS.gene63954:intron | 35.0% | |
| AACGTTTACCATCTGAGAAA+CGG | + | chr4.1:56270834-56270853 | None:intergenic | 35.0% | |
| AACTATGATTGTAGGTTCAC+TGG | - | chr4.1:56271619-56271638 | MS.gene63954:CDS | 35.0% | |
| AAGATGCTGTTAGGTAGATA+GGG | + | chr4.1:56270208-56270227 | None:intergenic | 35.0% | |
| AATGCTAACGAGTGTCTTAA+GGG | - | chr4.1:56272252-56272271 | MS.gene63954:intron | 35.0% | |
| ACAAGGATTTAACCATAACG+GGG | + | chr4.1:56271237-56271256 | None:intergenic | 35.0% | |
| ACTTATGCAAAAGAGGATGA+TGG | - | chr4.1:56270570-56270589 | MS.gene63954:CDS | 35.0% | |
| AGATAACATGATTGCTCAAG+AGG | + | chr4.1:56271930-56271949 | None:intergenic | 35.0% | |
| ATGGGGTACAGTATTTGTAA+TGG | + | chr4.1:56270364-56270383 | None:intergenic | 35.0% | |
| ATTTACTTACAGGCAAGAAC+TGG | - | chr4.1:56270731-56270750 | MS.gene63954:CDS | 35.0% | |
| CAATCTGGATACAGATAATG+TGG | - | chr4.1:56270170-56270189 | MS.gene63954:intron | 35.0% | |
| CATTACAATTGGGGGTTTAT+CGG | - | chr4.1:56270053-56270072 | MS.gene63954:intron | 35.0% | |
| CCTAATCTAGAAACAAGACA+TGG | + | chr4.1:56270666-56270685 | None:intergenic | 35.0% | |
| CCTTAAAGAGTTAGGGTTAA+AGG | - | chr4.1:56272383-56272402 | MS.gene63954:CDS | 35.0% | |
| CCTTTAACCCTAACTCTTTA+AGG | + | chr4.1:56272386-56272405 | None:intergenic | 35.0% | |
| GACAAATTTGCAACAGTCAA+AGG | + | chr4.1:56271152-56271171 | None:intergenic | 35.0% | |
| GCATTTCCCAATTTACAATC+TGG | - | chr4.1:56270155-56270174 | MS.gene63954:intron | 35.0% | |
| GCTACCATATTCTATGGATA+TGG | - | chr4.1:56271652-56271671 | MS.gene63954:intron | 35.0% | |
| GGGTCATAAGAAAAATGCAT+AGG | + | chr4.1:56270911-56270930 | None:intergenic | 35.0% | |
| GTTACTCTAATTGTCATGGT+GGG | - | chr4.1:56271373-56271392 | MS.gene63954:CDS | 35.0% | |
| TAAATTGGGAAATGCGAGTT+AGG | + | chr4.1:56270150-56270169 | None:intergenic | 35.0% | |
| TATTTCTCAGAACTTAGTCC+GGG | - | chr4.1:56270308-56270327 | MS.gene63954:intron | 35.0% | |
| TGCAACACAGCATTTAGAAA+TGG | + | chr4.1:56271564-56271583 | None:intergenic | 35.0% | |
| TGGGGTACAGTATTTGTAAT+GGG | + | chr4.1:56270363-56270382 | None:intergenic | 35.0% | |
| TGTTACTCTAATTGTCATGG+TGG | - | chr4.1:56271372-56271391 | MS.gene63954:CDS | 35.0% | |
| TTCACCAACTTATGCAAAAG+AGG | - | chr4.1:56270563-56270582 | MS.gene63954:CDS | 35.0% | |
| ! | ACTGGAAAACTTTCTGAGAA+AGG | - | chr4.1:56270749-56270768 | MS.gene63954:intron | 35.0% |
| ! | ATCTCTACTCTAGTTGATGT+GGG | + | chr4.1:56272078-56272097 | None:intergenic | 35.0% |
| ! | CCAGTTTTCATCTGCATTTT+GGG | - | chr4.1:56271712-56271731 | MS.gene63954:intron | 35.0% |
| ! | GTACATTTTATCATGCAACC+CGG | + | chr4.1:56270329-56270348 | None:intergenic | 35.0% |
| ! | TACTTTGGCTTACTAAATGC+TGG | - | chr4.1:56270006-56270025 | MS.gene63954:intron | 35.0% |
| ! | TCATCCTCTTTTGCATAAGT+TGG | + | chr4.1:56270570-56270589 | None:intergenic | 35.0% |
| ! | TCCAGTTTTCATCTGCATTT+TGG | - | chr4.1:56271711-56271730 | MS.gene63954:intron | 35.0% |
| !! | AGGTGTTACTCTAATTGTCA+TGG | - | chr4.1:56271369-56271388 | MS.gene63954:CDS | 35.0% |
| !! | CCATGTCTTGTTTCTAGATT+AGG | - | chr4.1:56270663-56270682 | MS.gene63954:intron | 35.0% |
| !! | GTACTTTTTAGCAACTTCAG+TGG | - | chr4.1:56269948-56269967 | MS.gene63954:intron | 35.0% |
| !! | GTCTTGTTTCTAGATTAGGT+CGG | - | chr4.1:56270667-56270686 | MS.gene63954:intron | 35.0% |
| !! | TTCTTCCACTGATTCACAAT+GGG | + | chr4.1:56270382-56270401 | None:intergenic | 35.0% |
| !! | TTTCTTCCACTGATTCACAA+TGG | + | chr4.1:56270383-56270402 | None:intergenic | 35.0% |
| AAATTAACCCACCGAAGTGT+CGG | - | chr4.1:56271893-56271912 | MS.gene63954:intron | 40.0% | |
| AACTTGTGCATTCAACGCAT+CGG | - | chr4.1:56272312-56272331 | MS.gene63954:CDS | 40.0% | |
| AAGTCACGTAAAGAAGCCAA+AGG | + | chr4.1:56272486-56272505 | None:intergenic | 40.0% | |
| ACGTTTACCATCTGAGAAAC+GGG | + | chr4.1:56270833-56270852 | None:intergenic | 40.0% | |
| AGATGCTGTTAGGTAGATAG+GGG | + | chr4.1:56270207-56270226 | None:intergenic | 40.0% | |
| ATATGTGGTCATTGTTCAGC+TGG | - | chr4.1:56269900-56269919 | MS.gene63954:CDS | 40.0% | |
| CAAGATGCTGTTAGGTAGAT+AGG | + | chr4.1:56270209-56270228 | None:intergenic | 40.0% | |
| CAAGGATTTAACCATAACGG+GGG | + | chr4.1:56271236-56271255 | None:intergenic | 40.0% | |
| CCCAAAATGCAGATGAAAAC+TGG | + | chr4.1:56271715-56271734 | None:intergenic | 40.0% | |
| CTCAATCCTGAGAACATGAA+AGG | - | chr4.1:56270961-56270980 | MS.gene63954:intron | 40.0% | |
| CTGCTACATTACTCTTCATG+TGG | - | chr4.1:56270804-56270823 | MS.gene63954:intron | 40.0% | |
| GACAGCTATGACAAAGGAAA+TGG | + | chr4.1:56270239-56270258 | None:intergenic | 40.0% | |
| GCTTACTAAATGCTGGAATC+TGG | - | chr4.1:56270013-56270032 | MS.gene63954:intron | 40.0% | |
| GGAAATGCGAGTTAGGAAAT+CGG | + | chr4.1:56270143-56270162 | None:intergenic | 40.0% | |
| TCACGAATGAATAAAGCACG+TGG | + | chr4.1:56271039-56271058 | None:intergenic | 40.0% | |
| TGGAATTGAAGCAGGGAAAT+AGG | - | chr4.1:56270691-56270710 | MS.gene63954:intron | 40.0% | |
| TTATGACAGGAATGGCTTTC+TGG | - | chr4.1:56272430-56272449 | MS.gene63954:CDS | 40.0% | |
| ! | CATCTCTACTCTAGTTGATG+TGG | + | chr4.1:56272079-56272098 | None:intergenic | 40.0% |
| ! | CTCAGGAAATTTTCAGCGAA+TGG | + | chr4.1:56271203-56271222 | None:intergenic | 40.0% |
| ! | GTTGCTAAAAAGTACGGCAA+AGG | + | chr4.1:56269943-56269962 | None:intergenic | 40.0% |
| ! | TAAAAAGTACGGCAAAGGCA+TGG | + | chr4.1:56269938-56269957 | None:intergenic | 40.0% |
| ! | TTGTTGGTGGAATATCTGGA+TGG | - | chr4.1:56270780-56270799 | MS.gene63954:intron | 40.0% |
| !! | TCTTCCACTGATTCACAATG+GGG | + | chr4.1:56270381-56270400 | None:intergenic | 40.0% |
| !! | TGTTTCTAGATTAGGTCGGA+TGG | - | chr4.1:56270671-56270690 | MS.gene63954:intron | 40.0% |
| !! | TTTCATCTGCATTTTGGGTC+TGG | - | chr4.1:56271717-56271736 | MS.gene63954:intron | 40.0% |
| ACTAATACTAGGCTGGGAGA+AGG | + | chr4.1:56270103-56270122 | None:intergenic | 45.0% | |
| ACTTCAGTGGTTGTAGTGTC+AGG | - | chr4.1:56269961-56269980 | MS.gene63954:intron | 45.0% | |
| ATGACAAAGGAAATGGCACC+AGG | + | chr4.1:56270232-56270251 | None:intergenic | 45.0% | |
| ATTCAAAACCGACACTTCGG+TGG | + | chr4.1:56271904-56271923 | None:intergenic | 45.0% | |
| GACAAGCCTTTCATGTTCTC+AGG | + | chr4.1:56270970-56270989 | None:intergenic | 45.0% | |
| GCATGGTTACAGTTCACCTT+TGG | - | chr4.1:56272467-56272486 | MS.gene63954:CDS | 45.0% | |
| GTTACTTACAACCCCCGTTA+TGG | - | chr4.1:56271222-56271241 | MS.gene63954:intron | 45.0% | |
| TGTACCCCATTGTGAATCAG+TGG | - | chr4.1:56270374-56270393 | MS.gene63954:intron | 45.0% | |
| TTCAAAACCGACACTTCGGT+GGG | + | chr4.1:56271903-56271922 | None:intergenic | 45.0% | |
| TTCCTTTGTCATAGCTGTCG+TGG | - | chr4.1:56270240-56270259 | MS.gene63954:intron | 45.0% | |
| TTCTTCTTGGCAGCAACTGT+CGG | - | chr4.1:56271817-56271836 | MS.gene63954:intron | 45.0% | |
| TTGCGTTCACTTACAGGAAC+AGG | + | chr4.1:56271690-56271709 | None:intergenic | 45.0% | |
| TTGCTTGCGATGCTTGGAAA+TGG | - | chr4.1:56271003-56271022 | MS.gene63954:intron | 45.0% | |
| ! | ACTCTAATTGTCATGGTGGG+TGG | - | chr4.1:56271376-56271395 | MS.gene63954:CDS | 45.0% |
| ! | TCGTGGGCTACCATATTCTA+TGG | - | chr4.1:56271646-56271665 | MS.gene63954:intron | 45.0% |
| ! | TCTATGTTGCTTGCGATGCT+TGG | - | chr4.1:56270997-56271016 | MS.gene63954:intron | 45.0% |
| !! | CATTGTTCAGCTGGCTTTAG+CGG | - | chr4.1:56269909-56269928 | MS.gene63954:CDS | 45.0% |
| !! | GACACTTCGGTGGGTTAATT+TGG | + | chr4.1:56271894-56271913 | None:intergenic | 45.0% |
| !! | TAGGTTCACTGGTTCATCGT+GGG | - | chr4.1:56271630-56271649 | MS.gene63954:CDS | 45.0% |
| !!! | AGTTTTTTTTTTTTTTTTTT+TGG | - | chr4.1:56271265-56271284 | MS.gene63954:intron | 5.0% |
| ACGGGGGTTGTAAGTAACTC+AGG | + | chr4.1:56271220-56271239 | None:intergenic | 50.0% | |
| AGCCACGACAGCTATGACAA+AGG | + | chr4.1:56270245-56270264 | None:intergenic | 50.0% | |
| AGGTCGGATGGAATTGAAGC+AGG | - | chr4.1:56270683-56270702 | MS.gene63954:intron | 50.0% | |
| CTACCTAACAGCATCTTGCC+TGG | - | chr4.1:56270211-56270230 | MS.gene63954:intron | 50.0% | |
| CTGGACTTGCGTTCACTTAC+AGG | + | chr4.1:56271696-56271715 | None:intergenic | 50.0% | |
| GGTCGGATGGAATTGAAGCA+GGG | - | chr4.1:56270684-56270703 | MS.gene63954:intron | 50.0% | |
| TGGAGAGACAGTGTAGTGCA+TGG | - | chr4.1:56272450-56272469 | MS.gene63954:CDS | 50.0% | |
| ! | ATGCTGGAATCTGGCGCTTT+TGG | - | chr4.1:56270022-56270041 | MS.gene63954:intron | 50.0% |
| ! | TGCTGGAATCTGGCGCTTTT+GGG | - | chr4.1:56270023-56270042 | MS.gene63954:intron | 50.0% |
| !! | CAACTGTCGGTTTGGTCTCA+TGG | - | chr4.1:56271830-56271849 | MS.gene63954:intron | 50.0% |
| !! | CTAATTGTCATGGTGGGTGG+TGG | - | chr4.1:56271379-56271398 | MS.gene63954:CDS | 50.0% |
| !! | GTAGGTTCACTGGTTCATCG+TGG | - | chr4.1:56271629-56271648 | MS.gene63954:CDS | 50.0% |
| !! | GTCGGTTTGGTCTCATGGAT+AGG | - | chr4.1:56271835-56271854 | MS.gene63954:intron | 50.0% |
| AGCTGTCGTGGCTGTTACCA+TGG | - | chr4.1:56270252-56270271 | MS.gene63954:intron | 55.0% | |
| GCACCAGGCAAGATGCTGTT+AGG | + | chr4.1:56270217-56270236 | None:intergenic | 55.0% | |
| GTGGATGCCCGTTTCTCAGA+TGG | - | chr4.1:56270823-56270842 | MS.gene63954:intron | 55.0% | |
| ! | CTTGGCAGCAACTGTCGGTT+TGG | - | chr4.1:56271822-56271841 | MS.gene63954:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 56269868 | 56272527 | 56269868 | ID=MS.gene63954 |
| chr4.1 | mRNA | 56269868 | 56272527 | 56269868 | ID=MS.gene63954.t1;Parent=MS.gene63954 |
| chr4.1 | exon | 56272309 | 56272527 | 56272309 | ID=MS.gene63954.t1.exon1;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56272309 | 56272527 | 56272309 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56272122 | 56272211 | 56272122 | ID=MS.gene63954.t1.exon2;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56272122 | 56272211 | 56272122 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56271551 | 56271652 | 56271551 | ID=MS.gene63954.t1.exon3;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56271551 | 56271652 | 56271551 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56271328 | 56271446 | 56271328 | ID=MS.gene63954.t1.exon4;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56271328 | 56271446 | 56271328 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56270700 | 56270762 | 56270700 | ID=MS.gene63954.t1.exon5;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56270700 | 56270762 | 56270700 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56270539 | 56270600 | 56270539 | ID=MS.gene63954.t1.exon6;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56270539 | 56270600 | 56270539 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| chr4.1 | exon | 56269868 | 56269956 | 56269868 | ID=MS.gene63954.t1.exon7;Parent=MS.gene63954.t1 |
| chr4.1 | CDS | 56269868 | 56269956 | 56269868 | ID=cds.MS.gene63954.t1;Parent=MS.gene63954.t1 |
| Gene Sequence |
| Protein sequence |
