AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052481.t1 MTR_4g088920 92.513 748 34 1 1 726 166 913 0.0 1418
MS.gene052481.t1 MTR_5g068600 29.072 657 366 20 3 602 84 697 1.76e-57 208
MS.gene052481.t1 MTR_5g068600 28.972 642 357 19 18 602 198 797 7.86e-57 207
MS.gene052481.t1 MTR_1g045670 28.218 202 113 4 249 418 743 944 4.30e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052481.t1 AT1G65070 52.203 749 280 11 3 726 181 876 0.0 728
MS.gene052481.t1 AT1G65070 52.120 731 272 11 3 708 181 858 0.0 704
MS.gene052481.t1 AT1G65070 53.981 628 222 7 3 607 181 764 0.0 643
MS.gene052481.t1 AT1G65070 55.738 488 152 5 3 468 181 626 2.05e-176 519
MS.gene052481.t1 AT5G54090 29.144 549 303 14 99 597 278 790 6.29e-55 202
MS.gene052481.t1 AT3G24320 25.871 201 117 4 250 418 498 698 2.58e-11 67.8
MS.gene052481.t1 AT3G24320 25.871 201 117 4 250 418 743 943 3.37e-11 67.4

Find 164 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.3:-24179088 None:intergenic
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.3:+24175574 MS.gene052481:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.3:-24176791 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.3:+24176660 MS.gene052481:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.3:+24177496 MS.gene052481:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.3:+24177629 MS.gene052481:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.3:+24176473 MS.gene052481:CDS
ATAGTACCTAAACTGAAAAT+TGG 0.281975 4.3:-24175800 None:intergenic
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.3:+24179088 MS.gene052481:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.3:+24175328 MS.gene052481:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.3:+24175501 MS.gene052481:CDS
AGCAATGGTGATATTTATTA+TGG 0.313667 4.3:+24178866 MS.gene052481:CDS
TTGCATCCTCTAACTCTTGT+TGG 0.316694 4.3:-24177442 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.3:-24175599 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.3:-24176193 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.3:+24176661 MS.gene052481:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.3:+24175384 MS.gene052481:CDS
CTTGGCAGGCAGATGCATTC+CGG 0.328681 4.3:-24176164 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.3:-24178890 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.3:-24175479 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.3:+24177497 MS.gene052481:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.3:+24175709 MS.gene052481:CDS
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.3:+24175977 MS.gene052481:CDS
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.3:-24178986 None:intergenic
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.3:+24177808 MS.gene052481:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.3:-24177376 None:intergenic
AGGGTTCTCTGGGGATGTAT+TGG 0.387828 4.3:+24176680 MS.gene052481:CDS
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.3:+24175557 MS.gene052481:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.3:+24176669 MS.gene052481:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.3:+24179004 MS.gene052481:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.3:+24175289 None:intergenic
GAAACAATCTTGGTACAGTA+TGG 0.389406 4.3:+24177719 MS.gene052481:CDS
TTAAGCATAGCGCAATCTAT+TGG 0.392431 4.3:+24176716 MS.gene052481:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.3:+24175971 MS.gene052481:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.3:+24175297 None:intergenic
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.3:+24176817 MS.gene052481:CDS
GTTCATAATTTCTGCATGAA+TGG 0.405550 4.3:-24176882 None:intergenic
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.3:+24177656 MS.gene052481:CDS
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.3:+24176088 MS.gene052481:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.3:+24176052 MS.gene052481:CDS
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.3:+24176592 MS.gene052481:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.3:+24178992 MS.gene052481:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.3:+24175615 MS.gene052481:CDS
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.3:+24176076 MS.gene052481:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.3:+24179005 MS.gene052481:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.3:+24175964 MS.gene052481:CDS
GCATTCAGAACTATACCTTC+TGG 0.438902 4.3:-24175545 None:intergenic
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.3:+24175965 MS.gene052481:CDS
GCCTATGCTCAATGGATGAA+TGG 0.442164 4.3:+24175770 MS.gene052481:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.3:+24177655 MS.gene052481:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.3:-24177803 None:intergenic
ACGGGTCCAACAAGAGTTAG+AGG 0.448882 4.3:+24177436 MS.gene052481:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.3:-24179097 None:intergenic
TATGGCAAAGGAAGCTCAAC+GGG 0.452879 4.3:+24177418 MS.gene052481:CDS
AGAAAAGTCCAAAACTTCCT+TGG 0.454680 4.3:+24176185 MS.gene052481:CDS
AATCCTGGACTCTTTATTGA+AGG 0.459366 4.3:+24175415 MS.gene052481:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.3:+24177400 MS.gene052481:CDS
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.3:-24177526 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.3:+24176853 MS.gene052481:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.3:+24175640 MS.gene052481:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.3:+24176670 MS.gene052481:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.3:+24176123 MS.gene052481:CDS
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.3:-24177785 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.3:-24176534 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.3:-24175567 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.3:+24177689 MS.gene052481:CDS
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.3:+24175850 MS.gene052481:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.3:+24176479 MS.gene052481:CDS
AGAGGATGCAAAATCTCAAA+TGG 0.483805 4.3:+24177454 MS.gene052481:CDS
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.3:+24176597 MS.gene052481:CDS
TCTAAGTACTTTGAAGGAAA+GGG 0.492540 4.3:+24176598 MS.gene052481:CDS
GATAATGTCACACTAAGGTC+TGG 0.494415 4.3:+24175947 MS.gene052481:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.3:+24176118 MS.gene052481:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.3:+24175762 MS.gene052481:CDS
CCTATGCTCAATGGATGAAT+GGG 0.497615 4.3:+24175771 MS.gene052481:CDS
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.3:-24177788 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.3:+24178812 MS.gene052481:intron
CGATTTAACAGTAAATATTG+AGG 0.507073 4.3:+24175877 MS.gene052481:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.3:-24177818 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.3:+24178997 MS.gene052481:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.3:+24175901 MS.gene052481:CDS
CGCTGATTGTCATCTCAAGA+TGG 0.514272 4.3:-24178955 None:intergenic
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.3:+24178823 MS.gene052481:CDS
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.3:-24177605 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.3:-24176663 None:intergenic
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.3:-24177394 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.3:+24177690 MS.gene052481:CDS
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.3:+24177817 MS.gene052481:CDS
TTCAGTTTAGGTACTATTGG+AGG 0.531767 4.3:+24175806 MS.gene052481:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.3:-24175376 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.3:-24175657 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.3:+24178822 MS.gene052481:CDS
CTTCCTTCAATAAAGAGTCC+AGG 0.535939 4.3:-24175418 None:intergenic
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.3:+24178993 MS.gene052481:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.3:+24175513 MS.gene052481:CDS
TAATTGACCATGCACAAAAG+TGG 0.545555 4.3:+24176753 MS.gene052481:CDS
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.3:+24177650 MS.gene052481:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.3:-24176671 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.3:-24177641 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.3:+24177709 MS.gene052481:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.3:-24178840 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.3:+24176550 MS.gene052481:CDS
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.3:-24175911 None:intergenic
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.3:+24176789 MS.gene052481:CDS
GATTTAACAGTAAATATTGA+GGG 0.563255 4.3:+24175878 MS.gene052481:CDS
TATAGGTATTTGCTTCCAGA+AGG 0.564358 4.3:+24175530 MS.gene052481:CDS
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.3:+24175358 MS.gene052481:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.3:+24178998 MS.gene052481:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.3:+24175826 MS.gene052481:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.3:+24176145 MS.gene052481:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.3:+24176502 MS.gene052481:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.3:+24176535 MS.gene052481:CDS
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.3:-24177661 None:intergenic
GCCACTGATGGGAGAACCAA+CGG 0.582829 4.3:-24177594 None:intergenic
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.3:-24177707 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.3:+24176117 MS.gene052481:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.3:+24177649 MS.gene052481:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.3:+24177406 MS.gene052481:CDS
TTAGAGATGAACAGCAGCAA+TGG 0.589819 4.3:+24178851 MS.gene052481:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.3:-24178841 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.3:+24177809 MS.gene052481:CDS
GCCGTTGGTTCTCCCATCAG+TGG 0.592897 4.3:+24177593 MS.gene052481:CDS
TTTCAGATAATGTCACACTA+AGG 0.593354 4.3:+24175942 MS.gene052481:CDS
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.3:-24177819 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.3:+24175502 MS.gene052481:CDS
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.3:-24177606 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.3:+24175493 MS.gene052481:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.3:+24176754 MS.gene052481:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.3:+24175634 MS.gene052481:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.3:+24176091 MS.gene052481:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.3:-24176509 None:intergenic
AGCAATAGATTTGAACAACA+TGG 0.612310 4.3:+24175607 MS.gene052481:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.3:+24177659 MS.gene052481:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.3:+24176534 MS.gene052481:CDS
CCCATTCATCCATTGAGCAT+AGG 0.615621 4.3:-24175771 None:intergenic
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.3:+24178919 MS.gene052481:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.3:+24176007 MS.gene052481:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.3:+24176063 MS.gene052481:CDS
AAAGCTCATACTCCTGCCGT+TGG 0.625973 4.3:+24177578 MS.gene052481:CDS
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.3:+24175885 MS.gene052481:CDS
TTATGGCAAAGGAAGCTCAA+CGG 0.627066 4.3:+24177417 MS.gene052481:CDS
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.3:+24176497 MS.gene052481:CDS
CTGATGGGAGAACCAACGGC+AGG 0.643450 4.3:-24177590 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.3:-24176639 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.3:+24175494 MS.gene052481:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.3:+24176757 MS.gene052481:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.3:+24175985 MS.gene052481:CDS
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.3:+24176794 MS.gene052481:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.3:+24178898 MS.gene052481:CDS
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.3:+24176820 MS.gene052481:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.3:+24176092 MS.gene052481:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.3:+24176066 MS.gene052481:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.3:-24176582 None:intergenic
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.3:+24177691 MS.gene052481:CDS
TGATATTTATTATGGTCCAG+CGG 0.693969 4.3:+24178874 MS.gene052481:CDS
AATTATGAACGTGTACTCTG+AGG 0.698166 4.3:+24176895 MS.gene052481:CDS
AATACATGGGATGGGCACTG+GGG 0.701367 4.3:+24179006 MS.gene052481:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.3:+24175841 MS.gene052481:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.3:-24177690 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.3:+24177676 MS.gene052481:CDS
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.3:+24178824 MS.gene052481:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.3:+24178908 MS.gene052481:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.3:-24179067 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.3:+24176671 MS.gene052481:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATCATG+TGG + chr4.3:24176324-24176343 MS.gene052481:intron 10.0%
!!! AATTTAGAATTGATATATTT+TGG + chr4.3:24178255-24178274 MS.gene052481:intron 10.0%
!! AAATACCTTTCAATAAAATT+TGG - chr4.3:24178191-24178210 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG - chr4.3:24177013-24177032 None:intergenic 15.0%
!! ATAATGATTATCATACTATA+TGG - chr4.3:24176986-24177005 None:intergenic 15.0%
!! ATATAAGTAAAAGAAGTTAT+TGG + chr4.3:24178155-24178174 MS.gene052481:intron 15.0%
!!! AAGGTATTTTATATTTAATC+TGG + chr4.3:24178202-24178221 MS.gene052481:intron 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG - chr4.3:24178675-24178694 None:intergenic 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG - chr4.3:24177012-24177031 None:intergenic 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG + chr4.3:24178372-24178391 MS.gene052481:intron 15.0%
!! ATATTTAAATTAACAGCTCT+TGG - chr4.3:24177163-24177182 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG + chr4.3:24175709-24175728 MS.gene052481:CDS 20.0%
!! CTTTAATTATTGAATTGAGT+TGG - chr4.3:24177529-24177548 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG + chr4.3:24175878-24175897 MS.gene052481:CDS 20.0%
!! TTGCAAAATAACTTTCTTAA+TGG - chr4.3:24177935-24177954 None:intergenic 20.0%
!!! ATTATCTAAAATATTCTTCG+TGG + chr4.3:24178121-24178140 MS.gene052481:intron 20.0%
!!! CATTTTTTCTTTTGAAGTAA+TGG + chr4.3:24178225-24178244 MS.gene052481:intron 20.0%
!!! CTTATTATATTTGAAACTAG+AGG - chr4.3:24178022-24178041 None:intergenic 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG + chr4.3:24178183-24178202 MS.gene052481:intron 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG + chr4.3:24178371-24178390 MS.gene052481:intron 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG + chr4.3:24178373-24178392 MS.gene052481:intron 20.0%
!!! TTAAGAAGCCAATTTTAAAA+AGG - chr4.3:24178652-24178671 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG - chr4.3:24176243-24176262 None:intergenic 25.0%
! AAATAGTAACAAATACTCTC+CGG - chr4.3:24178361-24178380 None:intergenic 25.0%
! AGCAATGGTGATATTTATTA+TGG + chr4.3:24178866-24178885 MS.gene052481:CDS 25.0%
! ATAGTACCTAAACTGAAAAT+TGG - chr4.3:24175803-24175822 None:intergenic 25.0%
! ATCCAAAAAAGTCTATGTTT+GGG - chr4.3:24178284-24178303 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG + chr4.3:24177131-24177150 MS.gene052481:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG - chr4.3:24178989-24179008 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG - chr4.3:24178602-24178621 None:intergenic 25.0%
! CAATTTCCAAATATGATGTT+AGG - chr4.3:24178565-24178584 None:intergenic 25.0%
! CGATTTAACAGTAAATATTG+AGG + chr4.3:24175877-24175896 MS.gene052481:CDS 25.0%
! CTAACATCATATTTGGAAAT+TGG + chr4.3:24178563-24178582 MS.gene052481:intron 25.0%
! GAAAAGCAACTAAAAGATTT+GGG + chr4.3:24177497-24177516 MS.gene052481:CDS 25.0%
! GGTATTTATTACAGAAAAAC+AGG - chr4.3:24178537-24178556 None:intergenic 25.0%
! GTTGTTCTATCATGTAATTT+GGG + chr4.3:24178417-24178436 MS.gene052481:intron 25.0%
! TATCCAAAAAAGTCTATGTT+TGG - chr4.3:24178285-24178304 None:intergenic 25.0%
! TTAATATAGTTAACCTGTCA+AGG + chr4.3:24177885-24177904 MS.gene052481:intron 25.0%
! TTATTATAGTTTCTTCTCCT+TGG + chr4.3:24176959-24176978 MS.gene052481:intron 25.0%
! TTCAAATCTATTGCTTCTTT+CGG - chr4.3:24175602-24175621 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG + chr4.3:24178589-24178608 MS.gene052481:intron 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG + chr4.3:24176402-24176421 MS.gene052481:intron 25.0%
!! ATATGTCCAATTTTCAGTTT+AGG + chr4.3:24175794-24175813 MS.gene052481:CDS 25.0%
!! ATTTTCAGTTTAGGTACTAT+TGG + chr4.3:24175803-24175822 MS.gene052481:CDS 25.0%
!! GTTTTTCTGTAATAAATACC+AGG + chr4.3:24178537-24178556 MS.gene052481:intron 25.0%
!! TAACGGCATTATGAAAATTT+TGG - chr4.3:24177202-24177221 None:intergenic 25.0%
!! TTTTTGGATATATCCAATAG+CGG + chr4.3:24178295-24178314 MS.gene052481:intron 25.0%
!!! AAGTATCGTCTCAAATTTTT+CGG + chr4.3:24175438-24175457 MS.gene052481:CDS 25.0%
!!! ATCTGTCTCCTTTTTAAAAT+TGG + chr4.3:24178641-24178660 MS.gene052481:intron 25.0%
AAAAAGGAACATAGAAATCC+TGG + chr4.3:24175400-24175419 MS.gene052481:CDS 30.0%
AATTACATGATAGAACAACG+AGG - chr4.3:24178416-24178435 None:intergenic 30.0%
ACAGTACATCCATAATTCAT+TGG - chr4.3:24179100-24179119 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG + chr4.3:24177629-24177648 MS.gene052481:CDS 30.0%
AGCAATAGATTTGAACAACA+TGG + chr4.3:24175607-24175626 MS.gene052481:CDS 30.0%
AGTAATCTTATCTAGTGAGT+TGG + chr4.3:24177957-24177976 MS.gene052481:intron 30.0%
ATTTGAACAACATGGAAGTT+AGG + chr4.3:24175615-24175634 MS.gene052481:CDS 30.0%
CAGTTCTCTTTGTAATACAT+GGG + chr4.3:24178993-24179012 MS.gene052481:CDS 30.0%
CATTACAGGAGGAAAAAAAT+CGG + chr4.3:24176831-24176850 MS.gene052481:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG + chr4.3:24177496-24177515 MS.gene052481:CDS 30.0%
CGTTGTTCTATCATGTAATT+TGG + chr4.3:24178416-24178435 MS.gene052481:intron 30.0%
CTTGTTCTCATTGATGAAAT+TGG + chr4.3:24176473-24176492 MS.gene052481:CDS 30.0%
GAATATGTAAATAGCTAGAG+GGG + chr4.3:24178321-24178340 MS.gene052481:intron 30.0%
GATCTTTGCAAAAGAAGAAA+AGG - chr4.3:24177357-24177376 None:intergenic 30.0%
GGAATATGTAAATAGCTAGA+GGG + chr4.3:24178320-24178339 MS.gene052481:intron 30.0%
GGATTGGATATCTATTAATG+AGG - chr4.3:24177130-24177149 None:intergenic 30.0%
GTAATCTTATCTAGTGAGTT+GGG + chr4.3:24177958-24177977 MS.gene052481:intron 30.0%
GTTCATAATTTCTGCATGAA+TGG - chr4.3:24176885-24176904 None:intergenic 30.0%
TCAGTTCTCTTTGTAATACA+TGG + chr4.3:24178992-24179011 MS.gene052481:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG + chr4.3:24175384-24175403 MS.gene052481:CDS 30.0%
TCCAAAAAAGTCTATGTTTG+GGG - chr4.3:24178283-24178302 None:intergenic 30.0%
TGATATTTATTATGGTCCAG+CGG + chr4.3:24178874-24178893 MS.gene052481:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG + chr4.3:24177132-24177151 MS.gene052481:intron 30.0%
TTATCATACTATATGGACCA+AGG - chr4.3:24176979-24176998 None:intergenic 30.0%
TTTCAGATAATGTCACACTA+AGG + chr4.3:24175942-24175961 MS.gene052481:CDS 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG - chr4.3:24176397-24176416 None:intergenic 30.0%
! AGTATCGTCTCAAATTTTTC+GGG + chr4.3:24175439-24175458 MS.gene052481:CDS 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG - chr4.3:24176396-24176415 None:intergenic 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG + chr4.3:24176597-24176616 MS.gene052481:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG - chr4.3:24177192-24177211 None:intergenic 30.0%
! CAAAATCTCTCAACTTTTAG+TGG + chr4.3:24176401-24176420 MS.gene052481:intron 30.0%
! GGCATTATGAAAATTTTGGA+TGG - chr4.3:24177198-24177217 None:intergenic 30.0%
! GTTGACTTCAAAATTAGATC+TGG + chr4.3:24176052-24176071 MS.gene052481:CDS 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG + chr4.3:24176598-24176617 MS.gene052481:CDS 30.0%
! TTCTTTTGCAAAGATCCAAA+GGG + chr4.3:24177361-24177380 MS.gene052481:intron 30.0%
! TTGCATAGATTGCAATCTTT+TGG + chr4.3:24175328-24175347 MS.gene052481:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG + chr4.3:24177206-24177225 MS.gene052481:intron 30.0%
!! TTCATAATGCCGTTATTTCT+GGG + chr4.3:24177207-24177226 MS.gene052481:intron 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG - chr4.3:24176052-24176071 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG + chr4.3:24176660-24176679 MS.gene052481:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG + chr4.3:24176661-24176680 MS.gene052481:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG + chr4.3:24176117-24176136 MS.gene052481:CDS 35.0%
AATCCTGGACTCTTTATTGA+AGG + chr4.3:24175415-24175434 MS.gene052481:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG + chr4.3:24176817-24176836 MS.gene052481:CDS 35.0%
AATTATGAACGTGTACTCTG+AGG + chr4.3:24176895-24176914 MS.gene052481:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG + chr4.3:24176754-24176773 MS.gene052481:CDS 35.0%
ACCACAAAATCAAAGTGTGA+TGG + chr4.3:24177066-24177085 MS.gene052481:intron 35.0%
ACTCAAAATTGCTCTTTCCT+CGG - chr4.3:24175660-24175679 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG + chr4.3:24176118-24176137 MS.gene052481:CDS 35.0%
ACTTAGATCAGCATAATGAG+TGG - chr4.3:24176585-24176604 None:intergenic 35.0%
AGAAAAGTCCAAAACTTCCT+TGG + chr4.3:24176185-24176204 MS.gene052481:CDS 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG - chr4.3:24177345-24177364 None:intergenic 35.0%
AGAGGATGCAAAATCTCAAA+TGG + chr4.3:24177454-24177473 MS.gene052481:CDS 35.0%
CAAATATGATGTTAGGAACC+TGG - chr4.3:24178558-24178577 None:intergenic 35.0%
CAGGTTCCTAACATCATATT+TGG + chr4.3:24178556-24178575 MS.gene052481:intron 35.0%
CAGTATCTTACAATATCTGC+GGG + chr4.3:24176535-24176554 MS.gene052481:CDS 35.0%
CCAGAAAGTCCAATGAATTA+TGG + chr4.3:24179088-24179107 MS.gene052481:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG + chr4.3:24176534-24176553 MS.gene052481:CDS 35.0%
CCATAATTCATTGGACTTTC+TGG - chr4.3:24179091-24179110 None:intergenic 35.0%
CTATTGTAGAAACCACTGAA+TGG + chr4.3:24178812-24178831 MS.gene052481:intron 35.0%
CTCATTGATGAAATTGGTAG+TGG + chr4.3:24176479-24176498 MS.gene052481:CDS 35.0%
CTCTTTGTAATACATGGGAT+GGG + chr4.3:24178998-24179017 MS.gene052481:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG + chr4.3:24177719-24177738 MS.gene052481:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG - chr4.3:24177344-24177363 None:intergenic 35.0%
GATCGACGCTTAGTAATAAA+TGG - chr4.3:24175482-24175501 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG + chr4.3:24178898-24178917 MS.gene052481:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG + chr4.3:24176838-24176857 MS.gene052481:CDS 35.0%
GGATATCTATTAATGAGGCA+CGG - chr4.3:24177125-24177144 None:intergenic 35.0%
GGGAATATGTAAATAGCTAG+AGG + chr4.3:24178319-24178338 MS.gene052481:intron 35.0%
TAATAGATATCCAATCCTCG+GGG + chr4.3:24177133-24177152 MS.gene052481:intron 35.0%
TAATTGACCATGCACAAAAG+TGG + chr4.3:24176753-24176772 MS.gene052481:CDS 35.0%
TATAGGTATTTGCTTCCAGA+AGG + chr4.3:24175530-24175549 MS.gene052481:CDS 35.0%
TATCATGTAATTTGGGTGAC+CGG + chr4.3:24178424-24178443 MS.gene052481:intron 35.0%
TCTCTTTGTAATACATGGGA+TGG + chr4.3:24178997-24179016 MS.gene052481:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG + chr4.3:24175965-24175984 MS.gene052481:CDS 35.0%
TGCTGATCTAAGTACTTTGA+AGG + chr4.3:24176592-24176611 MS.gene052481:CDS 35.0%
TTAAGCATAGCGCAATCTAT+TGG + chr4.3:24176716-24176735 MS.gene052481:CDS 35.0%
TTCAGTTTAGGTACTATTGG+AGG + chr4.3:24175806-24175825 MS.gene052481:CDS 35.0%
TTCCAGTGAAAATTCCATTG+CGG - chr4.3:24176642-24176661 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG + chr4.3:24176063-24176082 MS.gene052481:CDS 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG + chr4.3:24175971-24175990 MS.gene052481:CDS 35.0%
! ACCATTTTCCCCAGAAATAA+CGG - chr4.3:24177219-24177238 None:intergenic 35.0%
! AGTATGAGCTTTTACAATGG+AGG - chr4.3:24177570-24177589 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG + chr4.3:24175885-24175904 MS.gene052481:CDS 35.0%
! CTTCTTTTGCAAAGATCCAA+AGG + chr4.3:24177360-24177379 MS.gene052481:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG - chr4.3:24177573-24177592 None:intergenic 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG - chr4.3:24176462-24176481 None:intergenic 35.0%
!! TATCCGTAAGTTTTTGGAAG+TGG + chr4.3:24176436-24176455 MS.gene052481:CDS 35.0%
!! TCATAATGCCGTTATTTCTG+GGG + chr4.3:24177208-24177227 MS.gene052481:intron 35.0%
!! TCCATCACACTTTGATTTTG+TGG - chr4.3:24177070-24177089 None:intergenic 35.0%
!!! AGGAAGTTTTGGACTTTTCT+TGG - chr4.3:24176185-24176204 None:intergenic 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG + chr4.3:24176625-24176644 MS.gene052481:CDS 35.0%
!!! TCCCCAAACATAGACTTTTT+TGG + chr4.3:24178279-24178298 MS.gene052481:intron 35.0%
AACATTCAAGACCCAACAGA+TGG - chr4.3:24178707-24178726 None:intergenic 40.0%
AACCAACTTATAGGGTTCTC+TGG + chr4.3:24176669-24176688 MS.gene052481:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG + chr4.3:24178822-24178841 MS.gene052481:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG + chr4.3:24178908-24178927 MS.gene052481:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG - chr4.3:24177710-24177729 None:intergenic 40.0%
ACATTCAAGACCCAACAGAT+GGG - chr4.3:24178706-24178725 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG + chr4.3:24176670-24176689 MS.gene052481:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG - chr4.3:24176442-24176461 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG + chr4.3:24175826-24175845 MS.gene052481:CDS 40.0%
CCGCAGATATTGTAAGATAC+TGG - chr4.3:24176537-24176556 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG + chr4.3:24175771-24175790 MS.gene052481:CDS 40.0%
CTCATTGCTTTGCACTTTCT+TGG + chr4.3:24177304-24177323 MS.gene052481:intron 40.0%
CTCCAATATCTGCAAGGATA+AGG - chr4.3:24176216-24176235 None:intergenic 40.0%
CTTCCTTCAATAAAGAGTCC+AGG - chr4.3:24175421-24175440 None:intergenic 40.0%
GACATTCAATTACAGACTGC+AGG - chr4.3:24177268-24177287 None:intergenic 40.0%
GACCTTATCCTTGCAGATAT+TGG + chr4.3:24176211-24176230 MS.gene052481:intron 40.0%
GATAAGACAGTTAGAGAGGA+AGG + chr4.3:24177990-24178009 MS.gene052481:intron 40.0%
GATAATGTCACACTAAGGTC+TGG + chr4.3:24175947-24175966 MS.gene052481:CDS 40.0%
GCATCACTTATGTCAAAAGC+CGG + chr4.3:24176145-24176164 MS.gene052481:CDS 40.0%
GCATTCAGAACTATACCTTC+TGG - chr4.3:24175548-24175567 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG + chr4.3:24175964-24175983 MS.gene052481:CDS 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG + chr4.3:24176853-24176872 MS.gene052481:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG - chr4.3:24175379-24175398 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG + chr4.3:24177400-24177419 MS.gene052481:CDS 40.0%
TCTGTACACTAACGCTTTGA+AGG + chr4.3:24178737-24178756 MS.gene052481:intron 40.0%
TGAAACGATGCTTATGGCAA+AGG + chr4.3:24177406-24177425 MS.gene052481:CDS 40.0%
TGAAGAGGACAATGACATTG+CGG + chr4.3:24175841-24175860 MS.gene052481:CDS 40.0%
TGGGGATGATGAAACAATCT+TGG + chr4.3:24177709-24177728 MS.gene052481:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG + chr4.3:24177900-24177919 MS.gene052481:intron 40.0%
TGTTCATCTCTAAGTTACCC+CGG - chr4.3:24178844-24178863 None:intergenic 40.0%
TTACATATTCCCTCCGCTAT+TGG - chr4.3:24178311-24178330 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG + chr4.3:24178851-24178870 MS.gene052481:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG + chr4.3:24178380-24178399 MS.gene052481:intron 40.0%
TTATGGCAAAGGAAGCTCAA+CGG + chr4.3:24177417-24177436 MS.gene052481:CDS 40.0%
TTGCATCCTCTAACTCTTGT+TGG - chr4.3:24177445-24177464 None:intergenic 40.0%
TTGGATATATCCAATAGCGG+AGG + chr4.3:24178298-24178317 MS.gene052481:intron 40.0%
TTGGGATAAGACAGTTAGAG+AGG + chr4.3:24177986-24178005 MS.gene052481:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG - chr4.3:24177901-24177920 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG - chr4.3:24176196-24176215 None:intergenic 40.0%
! CAAGGGACTGCAATTTTGAA+GGG - chr4.3:24176379-24176398 None:intergenic 40.0%
! CTCACGTATCCGTAAGTTTT+TGG + chr4.3:24176430-24176449 MS.gene052481:CDS 40.0%
! CTTATCTAGTGAGTTGGGAA+CGG + chr4.3:24177963-24177982 MS.gene052481:intron 40.0%
! CTTTTGACATAAGTGATGCC+AGG - chr4.3:24176144-24176163 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG + chr4.3:24175634-24175653 MS.gene052481:CDS 40.0%
! TCAAGGGACTGCAATTTTGA+AGG - chr4.3:24176380-24176399 None:intergenic 40.0%
! TGGATATATCCAATAGCGGA+GGG + chr4.3:24178299-24178318 MS.gene052481:intron 40.0%
! TTTTGCAAAGATCCAAAGGG+AGG + chr4.3:24177364-24177383 MS.gene052481:intron 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG - chr4.3:24176666-24176685 None:intergenic 40.0%
!! AAGGGACTGCAATTTTGAAG+GGG - chr4.3:24176378-24176397 None:intergenic 40.0%
!! AAGTGTGATGGATGTTGTGA+AGG + chr4.3:24177078-24177097 MS.gene052481:intron 40.0%
!! CTCTGGAGCAACATACTTTA+TGG + chr4.3:24175574-24175593 MS.gene052481:CDS 40.0%
!! GGGTAATGGAAATGGAACAA+TGG + chr4.3:24175985-24176004 MS.gene052481:CDS 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG + chr4.3:24175977-24175996 MS.gene052481:CDS 40.0%
!!! AGTTTTGGACTTTTCTTGGC+AGG - chr4.3:24176181-24176200 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG - chr4.3:24176046-24176065 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG - chr4.3:24176045-24176064 None:intergenic 40.0%
AAATAGCTAGAGGGGTTGAG+AGG + chr4.3:24178329-24178348 MS.gene052481:intron 45.0%
AACTGATCCTTCAGAAGGTG+TGG + chr4.3:24176502-24176521 MS.gene052481:CDS 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG - chr4.3:24177338-24177357 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG + chr4.3:24178330-24178349 MS.gene052481:intron 45.0%
ACCACTGAATGGAAAATCCC+GGG + chr4.3:24178823-24178842 MS.gene052481:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG + chr4.3:24176497-24176516 MS.gene052481:CDS 45.0%
ATCTCAGGACCTAATACTGG+AGG + chr4.3:24176091-24176110 MS.gene052481:CDS 45.0%
CCAACTTATAGGGTTCTCTG+GGG + chr4.3:24176671-24176690 MS.gene052481:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG - chr4.3:24175774-24175793 None:intergenic 45.0%
GCAAGGATAAGGTCAAACCA+AGG - chr4.3:24176205-24176224 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG - chr4.3:24177397-24177416 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG + chr4.3:24175770-24175789 MS.gene052481:CDS 45.0%
GCTCTATCAGTCATTACAGG+AGG + chr4.3:24176820-24176839 MS.gene052481:CDS 45.0%
GGTGATCTCCAATATCTGCA+AGG - chr4.3:24176222-24176241 None:intergenic 45.0%
GGTTCAAAATGAGTGACACG+AGG - chr4.3:24179070-24179089 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG + chr4.3:24176088-24176107 MS.gene052481:CDS 45.0%
GTTCATCTCTAAGTTACCCC+GGG - chr4.3:24178843-24178862 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG - chr4.3:24177791-24177810 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG + chr4.3:24179005-24179024 MS.gene052481:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+GGG + chr4.3:24177418-24177437 MS.gene052481:CDS 45.0%
TCTCAGGACCTAATACTGGA+GGG + chr4.3:24176092-24176111 MS.gene052481:CDS 45.0%
TCTGCGGGAACATGTTAACT+TGG + chr4.3:24176550-24176569 MS.gene052481:CDS 45.0%
TGATAGAGCAAGTGAAGACC+TGG + chr4.3:24175358-24175377 MS.gene052481:CDS 45.0%
TGCAGATATTGGAGATCACC+AGG + chr4.3:24176222-24176241 MS.gene052481:intron 45.0%
TTCAATGAAAACGTTGGGCC+TGG + chr4.3:24176123-24176142 MS.gene052481:CDS 45.0%
TTCTTAGATGTTTGCACCGC+TGG - chr4.3:24178893-24178912 None:intergenic 45.0%
! AACTAGTTCTCCCACTCATC+AGG + chr4.3:24177808-24177827 MS.gene052481:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG + chr4.3:24177809-24177828 MS.gene052481:CDS 45.0%
! CGCTGATTGTCATCTCAAGA+TGG - chr4.3:24178958-24178977 None:intergenic 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG - chr4.3:24176103-24176122 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG + chr4.3:24176066-24176085 MS.gene052481:CDS 45.0%
! TGCCGCAATGGAATTTTCAC+TGG + chr4.3:24176637-24176656 MS.gene052481:CDS 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG + chr4.3:24177215-24177234 MS.gene052481:intron 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG - chr4.3:24175922-24175941 None:intergenic 45.0%
!!! CGTCTCAAATTTTTCGGGCT+GGG + chr4.3:24175444-24175463 MS.gene052481:CDS 45.0%
!!! GTCTCAAATTTTTCGGGCTG+GGG + chr4.3:24175445-24175464 MS.gene052481:CDS 45.0%
!!! TCGTCTCAAATTTTTCGGGC+TGG + chr4.3:24175443-24175462 MS.gene052481:CDS 45.0%
!!! TCTCAAATTTTTCGGGCTGG+GGG + chr4.3:24175446-24175465 MS.gene052481:CDS 45.0%
AAAGCTCATACTCCTGCCGT+TGG + chr4.3:24177578-24177597 MS.gene052481:CDS 50.0%
AACCAGAACAGCAGCAAGAG+CGG + chr4.3:24176789-24176808 MS.gene052481:CDS 50.0%
ACCTGCTTTCCCTGATGAGT+GGG - chr4.3:24177821-24177840 None:intergenic 50.0%
ACGGGTCCAACAAGAGTTAG+AGG + chr4.3:24177436-24177455 MS.gene052481:CDS 50.0%
ACTAGAGTGGTGGTCATCTC+AGG + chr4.3:24176076-24176095 MS.gene052481:CDS 50.0%
AGAGACGACTCCAGGAGTAA+TGG - chr4.3:24175914-24175933 None:intergenic 50.0%
ATTTGCACCTGCCCATCTGT+TGG + chr4.3:24178692-24178711 MS.gene052481:intron 50.0%
CAAGAGCTGCCTATGCTCAA+TGG + chr4.3:24175762-24175781 MS.gene052481:CDS 50.0%
CAAGTCCGTGTGAAGGGATT+GGG + chr4.3:24177656-24177675 MS.gene052481:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG + chr4.3:24177691-24177710 MS.gene052481:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG + chr4.3:24177690-24177709 MS.gene052481:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG + chr4.3:24178824-24178843 MS.gene052481:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG - chr4.3:24176674-24176693 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG - chr4.3:24176512-24176531 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG - chr4.3:24177788-24177807 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG + chr4.3:24177676-24177695 MS.gene052481:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG + chr4.3:24179004-24179023 MS.gene052481:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG - chr4.3:24177822-24177841 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG + chr4.3:24175502-24175521 MS.gene052481:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG + chr4.3:24175901-24175920 MS.gene052481:CDS 50.0%
TGACCATGCACAAAAGTGGG+TGG + chr4.3:24176757-24176776 MS.gene052481:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG - chr4.3:24177806-24177825 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG - chr4.3:24177664-24177683 None:intergenic 50.0%
TTTGCACCTGCCCATCTGTT+GGG + chr4.3:24178693-24178712 MS.gene052481:intron 50.0%
! AATACATGGGATGGGCACTG+GGG + chr4.3:24179006-24179025 MS.gene052481:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+TGG + chr4.3:24176680-24176699 MS.gene052481:CDS 50.0%
! CGGACTTGCTCTCCAAATTG+TGG - chr4.3:24177644-24177663 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG + chr4.3:24175494-24175513 MS.gene052481:CDS 50.0%
! CTAGTGAGTTGGGAACGGTT+GGG + chr4.3:24177968-24177987 MS.gene052481:intron 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG + chr4.3:24176007-24176026 MS.gene052481:CDS 50.0%
! TCTAGTGAGTTGGGAACGGT+TGG + chr4.3:24177967-24177986 MS.gene052481:intron 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG - chr4.3:24176763-24176782 None:intergenic 50.0%
AATGCGATCAGCGCCACTGA+TGG - chr4.3:24177609-24177628 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG - chr4.3:24177608-24177627 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG - chr4.3:24177379-24177398 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG + chr4.3:24175850-24175869 MS.gene052481:CDS 55.0%
CCCAGGCAATTCTACCACTG+TGG - chr4.3:24177693-24177712 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG + chr4.3:24175501-24175520 MS.gene052481:CDS 55.0%
CTTGGCAGGCAGATGCATTC+CGG - chr4.3:24176167-24176186 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG - chr4.3:24177330-24177349 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG + chr4.3:24177655-24177674 MS.gene052481:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG + chr4.3:24177689-24177708 MS.gene052481:CDS 55.0%
GCCACTGATGGGAGAACCAA+CGG - chr4.3:24177597-24177616 None:intergenic 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG + chr4.3:24177650-24177669 MS.gene052481:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG + chr4.3:24178919-24178938 MS.gene052481:CDS 55.0%
GTATGTTGCTCCAGAGCTGC+TGG - chr4.3:24175570-24175589 None:intergenic 55.0%
TCAAGACCCAACAGATGGGC+AGG - chr4.3:24178702-24178721 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG + chr4.3:24177817-24177836 MS.gene052481:CDS 55.0%
TCTTGGCTATCCCCGAGGAT+TGG - chr4.3:24177146-24177165 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG - chr4.3:24177112-24177131 None:intergenic 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG + chr4.3:24177649-24177668 MS.gene052481:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG + chr4.3:24175513-24175532 MS.gene052481:CDS 55.0%
! CCCCGGGATTTTCCATTCAG+TGG - chr4.3:24178827-24178846 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG + chr4.3:24175493-24175512 MS.gene052481:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG + chr4.3:24175557-24175576 MS.gene052481:CDS 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG + chr4.3:24175640-24175659 MS.gene052481:CDS 55.0%
ACAGCTCTTGGCTATCCCCG+AGG - chr4.3:24177151-24177170 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG + chr4.3:24178339-24178358 MS.gene052481:intron 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG - chr4.3:24176794-24176813 None:intergenic 60.0%
CTGATGGGAGAACCAACGGC+AGG - chr4.3:24177593-24177612 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG + chr4.3:24176794-24176813 MS.gene052481:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG + chr4.3:24177659-24177678 MS.gene052481:CDS 60.0%
!! GCCGTTGGTTCTCCCATCAG+TGG + chr4.3:24177593-24177612 MS.gene052481:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 24175302 24179135 24175302 ID=MS.gene052481
chr4.3 mRNA 24175302 24179135 24175302 ID=MS.gene052481.t1;Parent=MS.gene052481
chr4.3 exon 24175302 24176206 24175302 ID=MS.gene052481.t1.exon1;Parent=MS.gene052481.t1
chr4.3 CDS 24175302 24176206 24175302 ID=cds.MS.gene052481.t1;Parent=MS.gene052481.t1
chr4.3 exon 24176421 24176916 24176421 ID=MS.gene052481.t1.exon2;Parent=MS.gene052481.t1
chr4.3 CDS 24176421 24176916 24176421 ID=cds.MS.gene052481.t1;Parent=MS.gene052481.t1
chr4.3 exon 24177374 24177838 24177374 ID=MS.gene052481.t1.exon3;Parent=MS.gene052481.t1
chr4.3 CDS 24177374 24177838 24177374 ID=cds.MS.gene052481.t1;Parent=MS.gene052481.t1
chr4.3 exon 24178821 24179135 24178821 ID=MS.gene052481.t1.exon4;Parent=MS.gene052481.t1
chr4.3 CDS 24178821 24179135 24178821 ID=cds.MS.gene052481.t1;Parent=MS.gene052481.t1
Gene Sequence

>MS.gene052481

ATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGATTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGATATGTCCAATTTTCAGTTTAGGTACTATTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGGTAATATCTGAACTTTTTTATGCATGATGAAGATTTTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTATCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATACATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATTGGTGATTCAAATGCATTAAGCATAGCGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAATTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAACGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAAGAGATAATGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGATAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATCGTTCATAAGTAATGACTCAGTAAATTGACCACAAAATCAAAGTGTGATGGATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGCGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTCATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTGCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACGGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCCGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATATGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTAGTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGAGGAAGGTTACTTCCTCTAGTTTCAAATATAATAAGAAGAAAAAAAGTAGTTCGCGCTAGTTAAGAATACTATAAAATCATATTTAATTTTTTGATGTAATAAAAAATATATTGTATTATCTAAAATATTCTTCGTGGAAACTTGTTTCATATAAGTAAAAGAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAAGTAATGGTAAAATTAATTTAGAATTGATATATTTTGGATCCCCAAACATAGACTTTTTTGGATATATCCAATAGCGGAGGGAATATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTTCTGTAATAAATACCAGGTTCCTAACATCATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGAATTTTCTATAAAATTAATCTGTCTCCTTTTTAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCCATCTGTTGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGCTGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTGATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGACAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA
Protein sequence

>MS.gene052481.t1

MGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEIDLAFARAAYAQWMNGICPIFSLGTIGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPCGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLSTLKERDTCFENAAMEFSLETLQPTYRVLWGCIGDSNALSIAQSIGFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQREAEDLDRRETMLMAKEAQRVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQKPLNGKSRGNLEMNSSNGDIYYGPAVQTSKNTVDLRGMRLEEAAIHLEMTISASQPYSVLFVIHGMGTGAVKDRALAILQKHPRVTHFEPESPMNYGCTVARVK