Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050625.t1 | XP_003626542.2 | 74.4 | 168 | 34 | 4 | 4 | 167 | 3 | 165 | 5.60E-53 | 217.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050625.t1 | Q9SZC9 | 59.2 | 76 | 28 | 1 | 84 | 159 | 152 | 224 | 6.1e-16 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050625.t1 | G7L410 | 74.4 | 168 | 34 | 4 | 4 | 167 | 3 | 165 | 4.1e-53 | 217.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050625 | MS.gene050670 | 0.833244 | 5.96E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene050747 | 0.800952 | 1.13E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene05105 | 0.808253 | 3.39E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene051360 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene051525 | 0.831507 | 1.61E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene051582 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene052253 | 0.832457 | 9.35E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene052322 | 0.801412 | 9.11E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene052414 | 0.816413 | 5.60E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene052421 | 0.804834 | 1.79E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene052481 | 0.841793 | 3.83E-58 | -1.69E-46 |
| MS.gene050625 | MS.gene052484 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene052485 | 0.817824 | 2.70E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene052982 | 0.85577 | 5.05E-62 | -1.69E-46 |
| MS.gene050625 | MS.gene053209 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene054927 | 0.83514 | 2.00E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene055892 | 0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene055893 | 0.813918 | 2.01E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene057124 | 0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene057734 | 0.800079 | 1.71E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene058007 | 0.821988 | 3.01E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene058376 | 0.809851 | 1.54E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene058444 | 0.837212 | 5.94E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene058700 | 0.844467 | 7.42E-59 | -1.69E-46 |
| MS.gene050625 | MS.gene059420 | 0.811389 | 7.18E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene059688 | 0.835559 | 1.56E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene059692 | 0.810935 | 9.00E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene059695 | 0.82194 | 3.09E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene060403 | 0.83066 | 2.59E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene060837 | 0.840716 | 7.35E-58 | -1.69E-46 |
| MS.gene050625 | MS.gene06092 | 0.80146 | 8.91E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene061345 | 0.806355 | 8.57E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene062219 | 0.833904 | 4.08E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene062227 | 0.860361 | 2.18E-63 | -1.69E-46 |
| MS.gene050625 | MS.gene063114 | 0.808492 | 3.02E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene064203 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene064237 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene064830 | 0.834929 | 2.26E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene064875 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene065204 | 0.815284 | 1.00E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene065996 | 0.816499 | 5.36E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene06644 | 0.814576 | 1.44E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene066845 | 0.829865 | 4.05E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene066846 | 0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene066847 | 0.82976 | 4.30E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene06688 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene067414 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene068064 | 0.804987 | 1.66E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene06858 | 0.817135 | 3.86E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene06897 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene06920 | 0.827206 | 1.78E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene069395 | 0.810065 | 1.39E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene069435 | 0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene069525 | 0.802693 | 4.97E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene069976 | 0.817786 | 2.75E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene070108 | 0.835925 | 1.26E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene070956 | 0.833507 | 5.12E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene071060 | 0.857455 | 1.61E-62 | -1.69E-46 |
| MS.gene050625 | MS.gene07214 | 0.851157 | 1.07E-60 | -1.69E-46 |
| MS.gene050625 | MS.gene072415 | 0.801452 | 8.94E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene072430 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene072757 | 0.823297 | 1.49E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene072766 | 0.822182 | 2.72E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene07311 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene07366 | 0.860543 | 1.92E-63 | -1.69E-46 |
| MS.gene050625 | MS.gene074597 | 0.844844 | 5.88E-59 | -1.69E-46 |
| MS.gene050625 | MS.gene074599 | 0.830661 | 2.59E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene07786 | 0.832885 | 7.32E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene07862 | 0.813458 | 2.53E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene08208 | 0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene09570 | 0.830991 | 2.15E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene09574 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene09660 | 0.803985 | 2.68E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene20025 | 0.841041 | 6.04E-58 | -1.69E-46 |
| MS.gene050625 | MS.gene20225 | 0.848493 | 5.92E-60 | -1.69E-46 |
| MS.gene050625 | MS.gene20866 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene20910 | 0.839796 | 1.28E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene21564 | 0.810335 | 1.21E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene21625 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene21675 | 0.80079 | 1.22E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene22721 | 0.835462 | 1.65E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene22764 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene22818 | 0.943437 | 1.21E-102 | -1.69E-46 |
| MS.gene050625 | MS.gene22846 | 0.846602 | 1.96E-59 | -1.69E-46 |
| MS.gene050625 | MS.gene22985 | 0.863092 | 3.19E-64 | -1.69E-46 |
| MS.gene050625 | MS.gene24080 | 0.812953 | 3.27E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene24611 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene24742 | 0.804302 | 2.31E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene25560 | 0.823147 | 1.62E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene25693 | 0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene27117 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene27514 | 0.80909 | 2.25E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene27912 | 0.824342 | 8.50E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene28441 | 0.835878 | 1.30E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene30202 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene30306 | 0.821186 | 4.62E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene30343 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene30347 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene30733 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene30834 | 0.835519 | 1.60E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene32713 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene33072 | 0.852385 | 4.78E-61 | -1.69E-46 |
| MS.gene050625 | MS.gene33784 | 0.832714 | 8.08E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene33786 | 0.823084 | 1.68E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene33834 | 0.830138 | 3.48E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene34319 | 0.820481 | 6.71E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene35635 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene36507 | 0.811545 | 6.64E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene38588 | 0.811126 | 8.18E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene38773 | 0.813153 | 2.96E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene38802 | 0.830267 | 3.23E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene39051 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene39126 | 0.825491 | 4.55E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene39203 | 0.828809 | 7.31E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene39233 | 0.832263 | 1.04E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene39277 | 0.824471 | 7.93E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene39300 | 0.814499 | 1.49E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene39334 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene41873 | 0.803888 | 2.81E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene42899 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene42900 | 0.810942 | 8.97E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene43467 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene43482 | 0.843296 | 1.53E-58 | -1.69E-46 |
| MS.gene050625 | MS.gene43489 | 0.805397 | 1.36E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene43963 | 0.806197 | 9.24E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene45431 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene45469 | 0.80082 | 1.20E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene46018 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene46506 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene46507 | 0.838143 | 3.43E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene46956 | 0.832745 | 7.93E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene47389 | 0.839899 | 1.20E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene47398 | 0.811749 | 5.99E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene47758 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene47869 | 0.837234 | 5.86E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene48585 | 0.817047 | 4.04E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene48593 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene49004 | 0.825507 | 4.52E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene49092 | 0.80317 | 3.96E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene49436 | 0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene49717 | 0.804356 | 2.25E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene49873 | 0.807713 | 4.42E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene49979 | 0.82076 | 5.78E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene50196 | 0.804503 | 2.09E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene52101 | 0.827225 | 1.76E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene52324 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene52774 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene52776 | 0.828332 | 9.53E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene55270 | 0.806135 | 9.53E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene55340 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene56216 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene56473 | 0.822562 | 2.22E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene56713 | 0.834121 | 3.60E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene57001 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene57561 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene57947 | 0.818608 | 1.79E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene58252 | 0.808043 | 3.76E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene58817 | 0.832256 | 1.05E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene60395 | 0.823768 | 1.16E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene60800 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene60813 | 0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene61157 | 0.811291 | 7.53E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene61160 | 0.839698 | 1.36E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene62822 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene63954 | 0.811595 | 6.47E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene64266 | 0.801279 | 9.70E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene66835 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene66847 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene66892 | 0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene66910 | 0.818951 | 1.50E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene67422 | 0.806353 | 8.57E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene68419 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene68421 | 0.809293 | 2.03E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene69489 | 0.805944 | 1.05E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene70267 | 0.833277 | 5.85E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene70352 | 0.82113 | 4.76E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene71697 | 0.815901 | 7.29E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene74225 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene75297 | 0.80779 | 4.25E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene75660 | 0.806777 | 6.98E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene76198 | 0.802372 | 5.79E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene76425 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene77754 | 0.831913 | 1.27E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene77925 | 0.816952 | 4.24E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene79903 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene79947 | 0.838204 | 3.30E-57 | -1.69E-46 |
| MS.gene050625 | MS.gene82379 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene85059 | 0.815193 | 1.05E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene85919 | 0.832732 | 7.99E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene86355 | 0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene86413 | 0.803513 | 3.36E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene88978 | 0.816221 | 6.18E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene90462 | 0.828463 | 8.86E-55 | -1.69E-46 |
| MS.gene050625 | MS.gene90538 | 0.833417 | 5.40E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene90772 | 0.847088 | 1.44E-59 | -1.69E-46 |
| MS.gene050625 | MS.gene90788 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene90838 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene90870 | 0.821682 | 3.55E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene90950 | 0.82103 | 5.01E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene91599 | 0.818947 | 1.50E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene92064 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene050625 | MS.gene92549 | 0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene050625 | MS.gene92714 | 0.82195 | 3.07E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene92773 | 0.811152 | 8.08E-51 | -1.69E-46 |
| MS.gene050625 | MS.gene93043 | 0.817974 | 2.50E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene95062 | 0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene95468 | 0.816715 | 4.79E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene96252 | 0.821334 | 4.27E-53 | -1.69E-46 |
| MS.gene050625 | MS.gene96697 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene99855 | 0.800169 | 1.63E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050625.t1 | MTR_7g116990 | 83.750 | 160 | 17 | 4 | 12 | 167 | 11 | 165 | 5.64e-90 | 259 |
| MS.gene050625.t1 | MTR_4g094232 | 61.538 | 78 | 27 | 2 | 82 | 159 | 137 | 211 | 2.41e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050625.t1 | AT4G33520 | 51.042 | 96 | 44 | 1 | 72 | 167 | 140 | 232 | 1.08e-24 | 95.9 |
| MS.gene050625.t1 | AT4G33520 | 52.174 | 92 | 40 | 2 | 72 | 162 | 140 | 228 | 3.87e-24 | 94.4 |
| MS.gene050625.t1 | AT4G33520 | 57.692 | 78 | 30 | 1 | 82 | 159 | 150 | 224 | 1.77e-22 | 93.6 |
| MS.gene050625.t1 | AT4G33520 | 57.692 | 78 | 30 | 1 | 82 | 159 | 150 | 224 | 1.77e-22 | 93.6 |
Find 30 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTCTGAATCTCAATTT+TGG | 0.195929 | 7.3:+1185037 | MS.gene050625:CDS |
| AAATATTACCTCTAAGTCTA+AGG | 0.276760 | 7.3:-1185652 | None:intergenic |
| ACTTCTACCCTTAGACTTAG+AGG | 0.293678 | 7.3:+1185644 | MS.gene050625:CDS |
| TGCGTCACAGCAGAATGATT+TGG | 0.295260 | 7.3:-1185001 | None:intergenic |
| GCGTCACAGCAGAATGATTT+GGG | 0.352377 | 7.3:-1185000 | None:intergenic |
| AAGAGAAAACTGCAACAAAT+TGG | 0.354991 | 7.3:+1185570 | MS.gene050625:CDS |
| GCTGTTGTTCTCCATGTTCG+TGG | 0.430325 | 7.3:+1185190 | MS.gene050625:CDS |
| TGAGCTTCAGCAGCTGCTGT+TGG | 0.445681 | 7.3:-1185075 | None:intergenic |
| ATCATGGAGGTGGTCCCCAC+TGG | 0.448930 | 7.3:-1185155 | None:intergenic |
| ACAAATTGGCAAAAGCAGTT+AGG | 0.468817 | 7.3:+1185584 | MS.gene050625:CDS |
| TTCGGATGACAAAGGGGAAA+GGG | 0.488766 | 7.3:-1185549 | None:intergenic |
| CTGCCAAAATTGAGATTCAG+AGG | 0.501848 | 7.3:-1185040 | None:intergenic |
| ACAGTAGCAGATAACACTTC+TGG | 0.505949 | 7.3:-1185497 | None:intergenic |
| TAAAACCACATGTTGTTAAG+TGG | 0.519304 | 7.3:-1185622 | None:intergenic |
| CACACATCATTCCACGAACA+TGG | 0.531138 | 7.3:-1185201 | None:intergenic |
| GTCCCCACTGGAAGTAGTTG+AGG | 0.533910 | 7.3:-1185143 | None:intergenic |
| CAGCAGAATCATCATCATCA+TGG | 0.554273 | 7.3:-1185171 | None:intergenic |
| CTTCGGATGACAAAGGGGAA+AGG | 0.559317 | 7.3:-1185550 | None:intergenic |
| GCACACCACTTAACAACATG+TGG | 0.559641 | 7.3:+1185617 | MS.gene050625:CDS |
| AATATTACCTCTAAGTCTAA+GGG | 0.564175 | 7.3:-1185651 | None:intergenic |
| AAACGCGATGATGATATTGA+TGG | 0.574757 | 7.3:-1185099 | None:intergenic |
| CAACCTCAACTACTTCCAGT+GGG | 0.602218 | 7.3:+1185140 | MS.gene050625:CDS |
| AATCATCATCATCATGGAGG+TGG | 0.613652 | 7.3:-1185165 | None:intergenic |
| TCAACCTCAACTACTTCCAG+TGG | 0.617567 | 7.3:+1185139 | MS.gene050625:CDS |
| GAGGTTGAACAACACCGCAA+TGG | 0.646311 | 7.3:-1185124 | None:intergenic |
| TTTCTCTTCGGATGACAAAG+GGG | 0.661704 | 7.3:-1185555 | None:intergenic |
| GTTCGTGGAATGATGTGTGA+GGG | 0.680994 | 7.3:+1185205 | MS.gene050625:CDS |
| TGTTCGTGGAATGATGTGTG+AGG | 0.700135 | 7.3:+1185204 | MS.gene050625:CDS |
| CAGAATCATCATCATCATGG+AGG | 0.719272 | 7.3:-1185168 | None:intergenic |
| AACCTCAACTACTTCCAGTG+GGG | 0.733472 | 7.3:+1185141 | MS.gene050625:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAACATTGATTTTAAA+AGG | + | chr7.3:1185353-1185372 | MS.gene050625:intron | 10.0% |
| !!! | TTTTTTCAAATTTCATGTAA+AGG | + | chr7.3:1185711-1185730 | MS.gene050625:intron | 15.0% |
| !!! | ATTGCAAATGTTGATAAAAA+AGG | - | chr7.3:1185678-1185697 | None:intergenic | 20.0% |
| ! | AAATATTACCTCTAAGTCTA+AGG | - | chr7.3:1185655-1185674 | None:intergenic | 25.0% |
| ! | AATATTACCTCTAAGTCTAA+GGG | - | chr7.3:1185654-1185673 | None:intergenic | 25.0% |
| ! | CAAATTTCATGTAAAGGAAA+AGG | + | chr7.3:1185717-1185736 | MS.gene050625:intron | 25.0% |
| ! | CTCTATATAATCTCATTTAG+AGG | - | chr7.3:1186078-1186097 | None:intergenic | 25.0% |
| ! | TATATTGCAGTGATAGTATA+CGG | - | chr7.3:1185444-1185463 | None:intergenic | 25.0% |
| ! | TCAAATTTCATTTACAGACA+AGG | - | chr7.3:1185970-1185989 | None:intergenic | 25.0% |
| ! | TGACATGCTAAATTGAATAA+AGG | - | chr7.3:1186021-1186040 | None:intergenic | 25.0% |
| !! | AATTTGATTTACATGAAGCA+TGG | + | chr7.3:1186100-1186119 | MS.gene050625:intron | 25.0% |
| AAGAGAAAACTGCAACAAAT+TGG | + | chr7.3:1185570-1185589 | MS.gene050625:CDS | 30.0% | |
| AATTGCGTAGATATGAACAA+AGG | - | chr7.3:1185930-1185949 | None:intergenic | 30.0% | |
| CGCGAGTTTGATAAAATAAA+GGG | + | chr7.3:1185387-1185406 | MS.gene050625:intron | 30.0% | |
| GTTCATATCTACGCAATTAA+TGG | + | chr7.3:1185932-1185951 | MS.gene050625:intron | 30.0% | |
| GTTTCATGAGTAAATGACAA+TGG | - | chr7.3:1185905-1185924 | None:intergenic | 30.0% | |
| TAAAACCACATGTTGTTAAG+TGG | - | chr7.3:1185625-1185644 | None:intergenic | 30.0% | |
| TACGTCTAACAAAATCAAGA+CGG | + | chr7.3:1185834-1185853 | MS.gene050625:intron | 30.0% | |
| TCATTTACAGACAAGGAAAA+TGG | - | chr7.3:1185963-1185982 | None:intergenic | 30.0% | |
| TCGCGAGTTTGATAAAATAA+AGG | + | chr7.3:1185386-1185405 | MS.gene050625:intron | 30.0% | |
| TGTGAATGCAAACATTATTC+AGG | - | chr7.3:1185877-1185896 | None:intergenic | 30.0% | |
| ! | AAACCTCTGAATCTCAATTT+TGG | + | chr7.3:1185037-1185056 | MS.gene050625:CDS | 30.0% |
| ! | TGATTTTGTTAGACGTAATG+CGG | - | chr7.3:1185831-1185850 | None:intergenic | 30.0% |
| !! | ATTTGTTGCAGTTTTCTCTT+CGG | - | chr7.3:1185570-1185589 | None:intergenic | 30.0% |
| AAAAGCCCCTAAAACATAGA+GGG | - | chr7.3:1185997-1186016 | None:intergenic | 35.0% | |
| AAACGCGATGATGATATTGA+TGG | - | chr7.3:1185102-1185121 | None:intergenic | 35.0% | |
| ACAAATTGGCAAAAGCAGTT+AGG | + | chr7.3:1185584-1185603 | MS.gene050625:CDS | 35.0% | |
| ACGTCTAACAAAATCAAGAC+GGG | + | chr7.3:1185835-1185854 | MS.gene050625:intron | 35.0% | |
| TAAAAGCCCCTAAAACATAG+AGG | - | chr7.3:1185998-1186017 | None:intergenic | 35.0% | |
| TTGATTTACATGAAGCATGG+TGG | + | chr7.3:1186103-1186122 | MS.gene050625:intron | 35.0% | |
| ! | GAAAACCCCTCTATGTTTTA+GGG | + | chr7.3:1185988-1186007 | MS.gene050625:intron | 35.0% |
| ! | TGAAAACCCCTCTATGTTTT+AGG | + | chr7.3:1185987-1186006 | MS.gene050625:intron | 35.0% |
| ! | TTTTCTCTTCGGATGACAAA+GGG | - | chr7.3:1185559-1185578 | None:intergenic | 35.0% |
| !! | AAAACCCCTCTATGTTTTAG+GGG | + | chr7.3:1185989-1186008 | MS.gene050625:intron | 35.0% |
| AAAGCCCCTAAAACATAGAG+GGG | - | chr7.3:1185996-1186015 | None:intergenic | 40.0% | |
| AATCATCATCATCATGGAGG+TGG | - | chr7.3:1185168-1185187 | None:intergenic | 40.0% | |
| ACAGTAGCAGATAACACTTC+TGG | - | chr7.3:1185500-1185519 | None:intergenic | 40.0% | |
| ACTTCTACCCTTAGACTTAG+AGG | + | chr7.3:1185644-1185663 | MS.gene050625:CDS | 40.0% | |
| CAGAATCATCATCATCATGG+AGG | - | chr7.3:1185171-1185190 | None:intergenic | 40.0% | |
| CAGCAGAATCATCATCATCA+TGG | - | chr7.3:1185174-1185193 | None:intergenic | 40.0% | |
| CATGTCACTAAGTATGCTTG+TGG | + | chr7.3:1186034-1186053 | MS.gene050625:intron | 40.0% | |
| CTGCCAAAATTGAGATTCAG+AGG | - | chr7.3:1185043-1185062 | None:intergenic | 40.0% | |
| TTTCTCTTCGGATGACAAAG+GGG | - | chr7.3:1185558-1185577 | None:intergenic | 40.0% | |
| ! | GTTTTCTCTTCGGATGACAA+AGG | - | chr7.3:1185560-1185579 | None:intergenic | 40.0% |
| AACCTCAACTACTTCCAGTG+GGG | + | chr7.3:1185141-1185160 | MS.gene050625:CDS | 45.0% | |
| CAACCTCAACTACTTCCAGT+GGG | + | chr7.3:1185140-1185159 | MS.gene050625:CDS | 45.0% | |
| CACACATCATTCCACGAACA+TGG | - | chr7.3:1185204-1185223 | None:intergenic | 45.0% | |
| GCACACCACTTAACAACATG+TGG | + | chr7.3:1185617-1185636 | MS.gene050625:CDS | 45.0% | |
| GCGTCACAGCAGAATGATTT+GGG | - | chr7.3:1185003-1185022 | None:intergenic | 45.0% | |
| GTTCGTGGAATGATGTGTGA+GGG | + | chr7.3:1185205-1185224 | MS.gene050625:CDS | 45.0% | |
| TCAACCTCAACTACTTCCAG+TGG | + | chr7.3:1185139-1185158 | MS.gene050625:CDS | 45.0% | |
| TGCGTCACAGCAGAATGATT+TGG | - | chr7.3:1185004-1185023 | None:intergenic | 45.0% | |
| TGTTCGTGGAATGATGTGTG+AGG | + | chr7.3:1185204-1185223 | MS.gene050625:CDS | 45.0% | |
| TTCGGATGACAAAGGGGAAA+GGG | - | chr7.3:1185552-1185571 | None:intergenic | 45.0% | |
| ! | ATCATCGCGTTTTGCCATTG+CGG | + | chr7.3:1185110-1185129 | MS.gene050625:CDS | 45.0% |
| !! | AAGCATGGTGGATTAAGTGC+AGG | + | chr7.3:1186115-1186134 | MS.gene050625:intron | 45.0% |
| !! | CTCAATTTTGGCAGAGACAG+AGG | + | chr7.3:1185049-1185068 | MS.gene050625:CDS | 45.0% |
| !! | TGTTATTAATAAATAATTAA+TGG | + | chr7.3:1185470-1185489 | MS.gene050625:intron | 5.0% |
| CTTCGGATGACAAAGGGGAA+AGG | - | chr7.3:1185553-1185572 | None:intergenic | 50.0% | |
| GAGGTTGAACAACACCGCAA+TGG | - | chr7.3:1185127-1185146 | None:intergenic | 50.0% | |
| GCTGTTGTTCTCCATGTTCG+TGG | + | chr7.3:1185190-1185209 | MS.gene050625:CDS | 50.0% | |
| ! | AAATCAAGACGGGCTCTCTG+CGG | + | chr7.3:1185845-1185864 | MS.gene050625:intron | 50.0% |
| GTCCCCACTGGAAGTAGTTG+AGG | - | chr7.3:1185146-1185165 | None:intergenic | 55.0% | |
| TGAGCTTCAGCAGCTGCTGT+TGG | - | chr7.3:1185078-1185097 | None:intergenic | 55.0% | |
| ! | AATCAAGACGGGCTCTCTGC+GGG | + | chr7.3:1185846-1185865 | MS.gene050625:intron | 55.0% |
| ATCATGGAGGTGGTCCCCAC+TGG | - | chr7.3:1185158-1185177 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1184950 | 1186156 | 1184950 | ID=MS.gene050625 |
| chr7.3 | mRNA | 1184950 | 1186156 | 1184950 | ID=MS.gene050625.t1;Parent=MS.gene050625 |
| chr7.3 | exon | 1184950 | 1185264 | 1184950 | ID=MS.gene050625.t1.exon1;Parent=MS.gene050625.t1 |
| chr7.3 | CDS | 1184950 | 1185264 | 1184950 | ID=cds.MS.gene050625.t1;Parent=MS.gene050625.t1 |
| chr7.3 | exon | 1185497 | 1185665 | 1185497 | ID=MS.gene050625.t1.exon2;Parent=MS.gene050625.t1 |
| chr7.3 | CDS | 1185497 | 1185665 | 1185497 | ID=cds.MS.gene050625.t1;Parent=MS.gene050625.t1 |
| chr7.3 | exon | 1186137 | 1186156 | 1186137 | ID=MS.gene050625.t1.exon3;Parent=MS.gene050625.t1 |
| chr7.3 | CDS | 1186137 | 1186156 | 1186137 | ID=cds.MS.gene050625.t1;Parent=MS.gene050625.t1 |
| Gene Sequence |
| Protein sequence |
