Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64032.t1 | XP_003589515.1 | 91.2 | 441 | 11 | 1 | 2 | 414 | 88 | 528 | 6.30E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64032.t1 | B6ETT4 | 68.8 | 442 | 109 | 2 | 2 | 414 | 88 | 529 | 4.3e-175 | 615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64032.t1 | G7I7R4 | 91.2 | 441 | 11 | 1 | 2 | 414 | 88 | 528 | 4.5e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053301 | MS.gene64032 | 0.851685 | 7.56E-61 | -1.69E-46 |
| MS.gene059958 | MS.gene64032 | 0.821196 | 4.59E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64032.t1 | MTR_1g025550 | 91.196 | 443 | 11 | 1 | 2 | 416 | 88 | 530 | 0.0 | 783 |
| MS.gene64032.t1 | MTR_4g073400 | 70.628 | 446 | 101 | 2 | 2 | 417 | 88 | 533 | 0.0 | 650 |
| MS.gene64032.t1 | MTR_1g094810 | 50.340 | 441 | 185 | 4 | 2 | 414 | 88 | 522 | 1.10e-145 | 425 |
| MS.gene64032.t1 | MTR_4g115660 | 29.769 | 477 | 276 | 10 | 2 | 422 | 88 | 561 | 1.45e-58 | 201 |
| MS.gene64032.t1 | MTR_3g106660 | 29.132 | 484 | 278 | 11 | 2 | 423 | 81 | 561 | 7.87e-55 | 191 |
| MS.gene64032.t1 | MTR_7g075790 | 32.484 | 314 | 201 | 6 | 2 | 309 | 87 | 395 | 2.37e-49 | 175 |
| MS.gene64032.t1 | MTR_8g035590 | 34.314 | 306 | 187 | 8 | 12 | 309 | 97 | 396 | 7.06e-44 | 160 |
| MS.gene64032.t1 | MTR_4g073510 | 55.147 | 136 | 53 | 2 | 238 | 370 | 191 | 321 | 2.02e-40 | 149 |
| MS.gene64032.t1 | MTR_4g073510 | 36.402 | 239 | 99 | 7 | 4 | 223 | 52 | 256 | 2.75e-23 | 101 |
| MS.gene64032.t1 | MTR_7g080570 | 40.945 | 127 | 44 | 3 | 320 | 416 | 37 | 162 | 1.14e-19 | 85.9 |
| MS.gene64032.t1 | MTR_4g052080 | 64.912 | 57 | 7 | 2 | 12 | 63 | 28 | 76 | 1.01e-13 | 68.9 |
| MS.gene64032.t1 | MTR_6g069470 | 41.573 | 89 | 47 | 3 | 169 | 257 | 13 | 96 | 4.22e-13 | 67.8 |
| MS.gene64032.t1 | MTR_3g067585 | 40.449 | 89 | 48 | 3 | 169 | 257 | 1 | 84 | 3.29e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64032.t1 | AT1G20080 | 69.369 | 444 | 107 | 2 | 2 | 416 | 88 | 531 | 0.0 | 637 |
| MS.gene64032.t1 | AT1G20080 | 69.369 | 444 | 107 | 2 | 2 | 416 | 88 | 531 | 0.0 | 637 |
| MS.gene64032.t1 | AT1G20080 | 69.369 | 444 | 107 | 2 | 2 | 416 | 88 | 531 | 0.0 | 637 |
| MS.gene64032.t1 | AT1G20080 | 69.369 | 444 | 107 | 2 | 2 | 416 | 88 | 531 | 0.0 | 637 |
| MS.gene64032.t1 | AT1G20080 | 69.369 | 444 | 107 | 2 | 2 | 416 | 88 | 531 | 0.0 | 637 |
| MS.gene64032.t1 | AT2G20990 | 66.964 | 448 | 115 | 3 | 2 | 416 | 88 | 535 | 0.0 | 607 |
| MS.gene64032.t1 | AT2G20990 | 63.559 | 472 | 115 | 4 | 2 | 416 | 88 | 559 | 0.0 | 593 |
| MS.gene64032.t1 | AT2G20990 | 61.983 | 484 | 113 | 4 | 2 | 414 | 88 | 571 | 0.0 | 589 |
| MS.gene64032.t1 | AT5G04220 | 50.000 | 446 | 190 | 6 | 2 | 414 | 26 | 471 | 2.51e-149 | 432 |
| MS.gene64032.t1 | AT5G04220 | 50.000 | 446 | 190 | 6 | 2 | 414 | 88 | 533 | 2.43e-148 | 432 |
| MS.gene64032.t1 | AT2G21010 | 52.362 | 254 | 88 | 3 | 192 | 416 | 1 | 250 | 3.51e-86 | 263 |
| MS.gene64032.t1 | AT5G04220 | 44.984 | 309 | 137 | 6 | 139 | 414 | 3 | 311 | 9.97e-81 | 251 |
| MS.gene64032.t1 | AT1G05500 | 30.973 | 452 | 256 | 9 | 15 | 414 | 100 | 547 | 3.88e-61 | 207 |
| MS.gene64032.t1 | AT1G05500 | 30.958 | 407 | 225 | 9 | 60 | 414 | 1 | 403 | 1.48e-52 | 181 |
| MS.gene64032.t1 | AT3G61050 | 32.459 | 305 | 196 | 5 | 24 | 322 | 108 | 408 | 6.25e-44 | 160 |
| MS.gene64032.t1 | AT3G61050 | 32.459 | 305 | 196 | 5 | 24 | 322 | 108 | 408 | 6.25e-44 | 160 |
| MS.gene64032.t1 | AT2G21040 | 61.538 | 65 | 25 | 0 | 315 | 379 | 2 | 66 | 4.00e-24 | 101 |
| MS.gene64032.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 163 | 257 | 1 | 89 | 1.53e-14 | 71.6 |
| MS.gene64032.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 163 | 257 | 1 | 89 | 1.53e-14 | 71.6 |
| MS.gene64032.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 163 | 257 | 32 | 120 | 2.09e-14 | 72.0 |
| MS.gene64032.t1 | AT3G14590 | 26.199 | 271 | 170 | 10 | 6 | 250 | 91 | 357 | 2.26e-14 | 75.9 |
| MS.gene64032.t1 | AT3G14590 | 26.199 | 271 | 170 | 10 | 6 | 250 | 46 | 312 | 2.44e-14 | 75.5 |
| MS.gene64032.t1 | AT3G14590 | 26.199 | 271 | 170 | 10 | 6 | 250 | 5 | 271 | 2.55e-14 | 75.5 |
| MS.gene64032.t1 | AT3G14590 | 26.199 | 271 | 170 | 10 | 6 | 250 | 60 | 326 | 2.80e-14 | 75.5 |
| MS.gene64032.t1 | AT1G53590 | 26.087 | 276 | 172 | 11 | 3 | 250 | 85 | 356 | 3.24e-13 | 72.0 |
| MS.gene64032.t1 | AT3G14590 | 26.316 | 247 | 155 | 9 | 27 | 250 | 27 | 269 | 7.37e-13 | 70.9 |
| MS.gene64032.t1 | AT2G01540 | 40.909 | 88 | 47 | 3 | 170 | 257 | 3 | 85 | 1.29e-12 | 66.6 |
| MS.gene64032.t1 | AT3G17980 | 39.130 | 92 | 51 | 3 | 166 | 257 | 10 | 96 | 1.01e-11 | 63.9 |
| MS.gene64032.t1 | AT1G73580 | 41.667 | 96 | 51 | 3 | 169 | 264 | 4 | 94 | 2.02e-11 | 62.8 |
| MS.gene64032.t1 | AT3G19830 | 22.492 | 329 | 215 | 14 | 10 | 309 | 229 | 546 | 4.01e-11 | 65.5 |
| MS.gene64032.t1 | AT3G19830 | 22.492 | 329 | 215 | 14 | 10 | 309 | 229 | 546 | 4.01e-11 | 65.5 |
| MS.gene64032.t1 | AT3G19830 | 22.492 | 329 | 215 | 14 | 10 | 309 | 229 | 546 | 4.01e-11 | 65.5 |
| MS.gene64032.t1 | AT3G19830 | 22.492 | 329 | 215 | 14 | 10 | 309 | 229 | 546 | 4.01e-11 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAACTCATCATCCTTAAA+AGG | 0.195494 | 1.3:-729298 | None:intergenic |
| TTGCAGCCGCATGTTGATTT+TGG | 0.201989 | 1.3:+728014 | MS.gene64032:intron |
| CTTCAACATCTTCAGCTTCA+TGG | 0.205719 | 1.3:-729393 | None:intergenic |
| TGTCTATTCCTGGTCTTTAC+AGG | 0.225371 | 1.3:+728063 | MS.gene64032:CDS |
| TTTGCGCGGCTTATATTTAA+AGG | 0.251485 | 1.3:+729436 | MS.gene64032:CDS |
| GGAATTTGTTCAGCAATAAT+AGG | 0.273016 | 1.3:-727402 | None:intergenic |
| TTAAACTCTTCATTCCATTC+TGG | 0.286995 | 1.3:-728721 | None:intergenic |
| TTTGTGGCCTAAGGCCTTAC+AGG | 0.290174 | 1.3:+728417 | MS.gene64032:CDS |
| GCTTAGAAAGAAAGATATAA+TGG | 0.304229 | 1.3:+728612 | MS.gene64032:CDS |
| TGATGAAAAGGAATTGATTA+TGG | 0.312221 | 1.3:+727609 | MS.gene64032:CDS |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 1.3:-727658 | None:intergenic |
| CATGAGAGACACATAAATAT+TGG | 0.316964 | 1.3:-727901 | None:intergenic |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.324968 | 1.3:+727667 | MS.gene64032:CDS |
| TAATGCTTAATGTTTATGAT+TGG | 0.327754 | 1.3:+728776 | MS.gene64032:CDS |
| AATTTAAGAGTAAGTAGTTT+TGG | 0.333174 | 1.3:-729199 | None:intergenic |
| GGCCTTACAGGTGCAAATAA+TGG | 0.335538 | 1.3:+728429 | MS.gene64032:CDS |
| GCGCATAATGTTGAAGCCTT+TGG | 0.341358 | 1.3:+727857 | MS.gene64032:CDS |
| TTGAAATGTTTCACCCATCT+TGG | 0.348031 | 1.3:-729926 | None:intergenic |
| TTCTCATTCTCAGGATCATT+AGG | 0.353471 | 1.3:-729238 | None:intergenic |
| TTATGGAATTATCAATGAAA+TGG | 0.362011 | 1.3:+727626 | MS.gene64032:CDS |
| ACTGACCAATCATTCATTAT+GGG | 0.371685 | 1.3:-730224 | None:intergenic |
| TTGAGTTTAAGTTTCACATA+AGG | 0.380151 | 1.3:-728646 | None:intergenic |
| TGAGTTTAAGTTTCACATAA+GGG | 0.381669 | 1.3:-728645 | None:intergenic |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 1.3:+728381 | MS.gene64032:intron |
| GCAGATGCAATGTCTATTCC+TGG | 0.408163 | 1.3:+728053 | MS.gene64032:CDS |
| GGCAATTGGTGCAGCATGTA+AGG | 0.413141 | 1.3:+729891 | MS.gene64032:intron |
| AATGCTTAATGTTTATGATT+GGG | 0.413882 | 1.3:+728777 | MS.gene64032:CDS |
| ATCCATTATTTGCACCTGTA+AGG | 0.414927 | 1.3:-728431 | None:intergenic |
| CTTAGAAAGAAAGATATAAT+GGG | 0.420642 | 1.3:+728613 | MS.gene64032:CDS |
| CCACTAGCAGGTGTTCCTTC+CGG | 0.429816 | 1.3:-729349 | None:intergenic |
| TAATGTTTATGATTGGGAAC+AGG | 0.431633 | 1.3:+728783 | MS.gene64032:CDS |
| GTTTGGAAAGGCTGAGAAGA+TGG | 0.433941 | 1.3:+729135 | MS.gene64032:intron |
| CCACGTGACTTCTCATTCTC+AGG | 0.435478 | 1.3:-729247 | None:intergenic |
| TGAATTTGAAGAACTTAACT+TGG | 0.437517 | 1.3:+727446 | MS.gene64032:CDS |
| TGGATTGCGAGCAACAGTTC+AGG | 0.437684 | 1.3:+727687 | MS.gene64032:CDS |
| GAATTATCAATGAAATGGGC+TGG | 0.454207 | 1.3:+727631 | MS.gene64032:CDS |
| TTCACATGAAGAATTCCAAC+TGG | 0.456262 | 1.3:-728571 | None:intergenic |
| AGTGTATAGCACTGATGAAA+AGG | 0.456613 | 1.3:+727597 | MS.gene64032:CDS |
| TTTGGTGTAAGCTCTTTCAA+TGG | 0.460667 | 1.3:-729172 | None:intergenic |
| TTAAATATAAGCCGCGCAAA+CGG | 0.466177 | 1.3:-729433 | None:intergenic |
| CTATATATACCTTGAAAAGT+TGG | 0.467929 | 1.3:-727480 | None:intergenic |
| CATGAAGCTGAAGATGTTGA+AGG | 0.474251 | 1.3:+729394 | MS.gene64032:CDS |
| TTATGTGTCTCTCATGGAAA+AGG | 0.484817 | 1.3:+727908 | MS.gene64032:CDS |
| TATGGAATTATCAATGAAAT+GGG | 0.501349 | 1.3:+727627 | MS.gene64032:CDS |
| TCAGGAAACTCTTGGATATG+TGG | 0.509583 | 1.3:+730099 | MS.gene64032:intron |
| ATTTGCACCTGTAAGGCCTT+AGG | 0.516595 | 1.3:-728424 | None:intergenic |
| AGAAGACACCGAAAAGGCTC+CGG | 0.523155 | 1.3:+729330 | MS.gene64032:CDS |
| TGGTCTTTACAGGATTGTCC+AGG | 0.529396 | 1.3:+728073 | MS.gene64032:CDS |
| AAGATTCAATTGAGCTTCAG+TGG | 0.530756 | 1.3:+730196 | MS.gene64032:CDS |
| AATTATCAATGAAATGGGCT+GGG | 0.534000 | 1.3:+727632 | MS.gene64032:CDS |
| AACAATGATACATACTGTGA+TGG | 0.538427 | 1.3:-728454 | None:intergenic |
| CAATATTTATGTGTCTCTCA+TGG | 0.544537 | 1.3:+727902 | MS.gene64032:CDS |
| ACAAGAACTTGAATCCAGAA+TGG | 0.555590 | 1.3:+728707 | MS.gene64032:CDS |
| TTTGGAAAGGCTGAGAAGAT+GGG | 0.557070 | 1.3:+729136 | MS.gene64032:CDS |
| TTGGCGAAACAAGGAAAACT+AGG | 0.559504 | 1.3:-727882 | None:intergenic |
| AAAAGCAAACCACCACTAGC+AGG | 0.570645 | 1.3:-729361 | None:intergenic |
| GAATTCAGAAGACACCGAAA+AGG | 0.571008 | 1.3:+729324 | MS.gene64032:CDS |
| TATATACCTTGAAAAGTTGG+TGG | 0.574416 | 1.3:-727477 | None:intergenic |
| GGTGGTTAACTAGTTTGGAA+AGG | 0.576754 | 1.3:+729123 | MS.gene64032:intron |
| GAATTTGAAGAACTTAACTT+GGG | 0.579840 | 1.3:+727447 | MS.gene64032:CDS |
| CAAGGAAAACTAGGAACCAA+AGG | 0.582613 | 1.3:-727873 | None:intergenic |
| CTGACCAATCATTCATTATG+GGG | 0.585607 | 1.3:-730223 | None:intergenic |
| GTCACGTGGAGAGCTTATTG+TGG | 0.600730 | 1.3:+729261 | MS.gene64032:CDS |
| ACCACACAAATCCGTTTGCG+CGG | 0.615343 | 1.3:+729422 | MS.gene64032:CDS |
| ACATAAATATTGGCGAAACA+AGG | 0.620390 | 1.3:-727891 | None:intergenic |
| TTTAATCCAAAATCAACATG+CGG | 0.621366 | 1.3:-728020 | None:intergenic |
| GACACCGAAAAGGCTCCGGA+AGG | 0.626245 | 1.3:+729334 | MS.gene64032:CDS |
| CCGGAAGGAACACCTGCTAG+TGG | 0.626646 | 1.3:+729349 | MS.gene64032:CDS |
| GCGGCTTATATTTAAAGGCG+AGG | 0.630495 | 1.3:+729441 | MS.gene64032:CDS |
| AGAAAGAAAGATATAATGGG+AGG | 0.645260 | 1.3:+728616 | MS.gene64032:CDS |
| CCTGAGAATGAGAAGTCACG+TGG | 0.651349 | 1.3:+729247 | MS.gene64032:CDS |
| GAAGGAACACCTGCTAGTGG+TGG | 0.656477 | 1.3:+729352 | MS.gene64032:CDS |
| ATGGAATGAAGAGTTTAATG+TGG | 0.658297 | 1.3:+728726 | MS.gene64032:CDS |
| TGGACAATCCTGTAAAGACC+AGG | 0.661769 | 1.3:-728071 | None:intergenic |
| GCCGCGCAAACGGATTTGTG+TGG | 0.677878 | 1.3:-729423 | None:intergenic |
| AAAGGCTTCAACATTATGCG+CGG | 0.685990 | 1.3:-727855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACATAACATTATAATT+AGG | + | chr1.3:728494-728513 | MS.gene64032:intron | 10.0% |
| !!! | AAAATTTTTAAAAAAGTTGA+GGG | + | chr1.3:728949-728968 | MS.gene64032:intron | 10.0% |
| !!! | ATTGATTTTCAAAATTTTAT+TGG | + | chr1.3:727291-727310 | MS.gene64032:intron | 10.0% |
| !! | TAAAGTAAGTATAGATTAAA+AGG | - | chr1.3:729782-729801 | None:intergenic | 15.0% |
| !! | TCAAATATAAACAAAAAAAG+CGG | + | chr1.3:727723-727742 | MS.gene64032:intron | 15.0% |
| !! | TTATGTTATAAACTCATAAA+GGG | - | chr1.3:728484-728503 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAAAAGTTGAG+GGG | + | chr1.3:728950-728969 | MS.gene64032:intron | 15.0% |
| !!! | CAAAATTTTTAAAAAAGTTG+AGG | + | chr1.3:728948-728967 | MS.gene64032:intron | 15.0% |
| !! | AATGCTTAATGTTTATGATT+GGG | + | chr1.3:728777-728796 | MS.gene64032:CDS | 20.0% |
| !! | CAAGAATAATATTAATGACA+TGG | - | chr1.3:728119-728138 | None:intergenic | 20.0% |
| !! | CTTAGAAAGAAAGATATAAT+GGG | + | chr1.3:728613-728632 | MS.gene64032:CDS | 20.0% |
| !! | GTTATGTTATAAACTCATAA+AGG | - | chr1.3:728485-728504 | None:intergenic | 20.0% |
| !! | GTTGATCCAAATATATAATA+TGG | + | chr1.3:727561-727580 | MS.gene64032:intron | 20.0% |
| !! | TAATATATAGAAGAACTAGA+TGG | - | chr1.3:729530-729549 | None:intergenic | 20.0% |
| !! | TAATGCTTAATGTTTATGAT+TGG | + | chr1.3:728776-728795 | MS.gene64032:CDS | 20.0% |
| !! | TAATTAGGTGTTAATTAGAT+TGG | + | chr1.3:728509-728528 | MS.gene64032:intron | 20.0% |
| !! | TACAAAAAAGATTTAGTGAT+CGG | + | chr1.3:728145-728164 | MS.gene64032:intron | 20.0% |
| !! | TATGGAATTATCAATGAAAT+GGG | + | chr1.3:727627-727646 | MS.gene64032:CDS | 20.0% |
| !! | TTAATCTATACTTACTTTAG+AGG | + | chr1.3:729783-729802 | MS.gene64032:intron | 20.0% |
| !! | TTATGGAATTATCAATGAAA+TGG | + | chr1.3:727626-727645 | MS.gene64032:CDS | 20.0% |
| !!! | AAAACATTTAAAATCTCTTC+TGG | - | chr1.3:728918-728937 | None:intergenic | 20.0% |
| !!! | AATTTAAGAGTAAGTAGTTT+TGG | - | chr1.3:729202-729221 | None:intergenic | 20.0% |
| !!! | AGATTTTAACCATTGTTTTA+TGG | + | chr1.3:729870-729889 | MS.gene64032:intron | 20.0% |
| !!! | GAAGAGATTTTAAATGTTTT+TGG | + | chr1.3:728918-728937 | MS.gene64032:intron | 20.0% |
| !!! | TAACATAGTTTTATGTCTTA+TGG | + | chr1.3:730041-730060 | MS.gene64032:intron | 20.0% |
| !!! | TTCATTTTCTGTTGTTAAAA+AGG | - | chr1.3:727777-727796 | None:intergenic | 20.0% |
| !!! | TTTAGCGATATTTTTCAAAT+CGG | + | chr1.3:728217-728236 | MS.gene64032:intron | 20.0% |
| !!! | TTTTTGTTTATATTTGAGTC+CGG | - | chr1.3:727720-727739 | None:intergenic | 20.0% |
| ! | AAAAGGAAGAAATCAATAGT+TGG | - | chr1.3:729765-729784 | None:intergenic | 25.0% |
| ! | AAAAGTCTTTAAATGATTGC+AGG | + | chr1.3:727806-727825 | MS.gene64032:intron | 25.0% |
| ! | ATAGACCAAAATTGACAAAT+TGG | + | chr1.3:728171-728190 | MS.gene64032:intron | 25.0% |
| ! | ATGCAAATTTAGACTAAAGT+TGG | + | chr1.3:728822-728841 | MS.gene64032:intron | 25.0% |
| ! | ATGGTTAAAATCTCATTGAA+AGG | - | chr1.3:729863-729882 | None:intergenic | 25.0% |
| ! | ATTGCTTGATTAACATTCTA+AGG | - | chr1.3:729041-729060 | None:intergenic | 25.0% |
| ! | CAAATATATAATATGGTTGC+AGG | + | chr1.3:727568-727587 | MS.gene64032:intron | 25.0% |
| ! | CATGCTTGAAAATATGTTAT+AGG | - | chr1.3:729088-729107 | None:intergenic | 25.0% |
| ! | CTATATATACCTTGAAAAGT+TGG | - | chr1.3:727483-727502 | None:intergenic | 25.0% |
| ! | CTGCAACCATATTATATATT+TGG | - | chr1.3:727570-727589 | None:intergenic | 25.0% |
| ! | GAAAGTCAACAAATCATAAT+CGG | - | chr1.3:729557-729576 | None:intergenic | 25.0% |
| ! | GAATTTGAAGAACTTAACTT+GGG | + | chr1.3:727447-727466 | MS.gene64032:CDS | 25.0% |
| ! | GATCTGATAAAATAATACCT+TGG | - | chr1.3:729476-729495 | None:intergenic | 25.0% |
| ! | GCTTAGAAAGAAAGATATAA+TGG | + | chr1.3:728612-728631 | MS.gene64032:CDS | 25.0% |
| ! | TCAGGAAATTATAAAAGATC+AGG | + | chr1.3:728381-728400 | MS.gene64032:intron | 25.0% |
| ! | TGAATTTGAAGAACTTAACT+TGG | + | chr1.3:727446-727465 | MS.gene64032:CDS | 25.0% |
| ! | TGATGAAAAGGAATTGATTA+TGG | + | chr1.3:727609-727628 | MS.gene64032:CDS | 25.0% |
| ! | TTAACTGCAACTATAATGTT+AGG | - | chr1.3:727661-727680 | None:intergenic | 25.0% |
| ! | TTGCTTGATTAACATTCTAA+GGG | - | chr1.3:729040-729059 | None:intergenic | 25.0% |
| ! | TTTAATCCAAAATCAACATG+CGG | - | chr1.3:728023-728042 | None:intergenic | 25.0% |
| !! | AAGTTTTCAAAATTGCAAAC+TGG | - | chr1.3:728976-728995 | None:intergenic | 25.0% |
| !! | ACTGAATCAATTTTGTACTT+TGG | - | chr1.3:727426-727445 | None:intergenic | 25.0% |
| !! | AGTTATGTACAAACCTTTTA+AGG | + | chr1.3:729285-729304 | MS.gene64032:CDS | 25.0% |
| !! | AGTTGATATAGAAACTGATT+CGG | + | chr1.3:728257-728276 | MS.gene64032:intron | 25.0% |
| !! | CAATTGAATCTTTCCATTTT+TGG | - | chr1.3:730188-730207 | None:intergenic | 25.0% |
| !! | GAAATTTAAAATTTGCAGAC+TGG | - | chr1.3:729006-729025 | None:intergenic | 25.0% |
| !! | GATTTTGGATTAAAACTACT+TGG | + | chr1.3:728029-728048 | MS.gene64032:CDS | 25.0% |
| !! | TATGGTTAGTACAACTATTT+TGG | + | chr1.3:727330-727349 | MS.gene64032:intron | 25.0% |
| !! | TCTAAAATATGTAACTGCTT+TGG | + | chr1.3:729670-729689 | MS.gene64032:intron | 25.0% |
| !! | TGAGTTTAAGTTTCACATAA+GGG | - | chr1.3:728648-728667 | None:intergenic | 25.0% |
| !! | TTGAGTTTAAGTTTCACATA+AGG | - | chr1.3:728649-728668 | None:intergenic | 25.0% |
| !!! | GTGAATGTTTTGGTTAAAAA+TGG | + | chr1.3:728890-728909 | MS.gene64032:intron | 25.0% |
| !!! | TTAGATTGGCTAATTTTACT+TGG | + | chr1.3:728523-728542 | MS.gene64032:intron | 25.0% |
| !!! | TTTACTTGGTTAATTTGTCA+GGG | + | chr1.3:728537-728556 | MS.gene64032:intron | 25.0% |
| !!! | TTTTACTTGGTTAATTTGTC+AGG | + | chr1.3:728536-728555 | MS.gene64032:intron | 25.0% |
| !!! | TTTTGGTTGAATGTTGTTAT+AGG | + | chr1.3:727347-727366 | MS.gene64032:intron | 25.0% |
| AAAAATGTATTTGTGGCCTA+AGG | + | chr1.3:728408-728427 | MS.gene64032:CDS | 30.0% | |
| AAACATTTCAATTACGCTAG+AGG | + | chr1.3:729938-729957 | MS.gene64032:intron | 30.0% | |
| AACAATGATACATACTGTGA+TGG | - | chr1.3:728457-728476 | None:intergenic | 30.0% | |
| AACATAAAGTCTCTCATTGA+TGG | - | chr1.3:729970-729989 | None:intergenic | 30.0% | |
| AACTATGTTAGTGTTACCTT+TGG | - | chr1.3:730031-730050 | None:intergenic | 30.0% | |
| ACATAAAGTCTCTCATTGAT+GGG | - | chr1.3:729969-729988 | None:intergenic | 30.0% | |
| ACATAAATATTGGCGAAACA+AGG | - | chr1.3:727894-727913 | None:intergenic | 30.0% | |
| ACTTAGAAATAGATGACAAG+TGG | - | chr1.3:729602-729621 | None:intergenic | 30.0% | |
| ACTTTCGATTTATTGCTATC+TGG | + | chr1.3:729571-729590 | MS.gene64032:intron | 30.0% | |
| AGGTTGCAAAAATGTATTTG+TGG | + | chr1.3:728401-728420 | MS.gene64032:CDS | 30.0% | |
| ATGGAATGAAGAGTTTAATG+TGG | + | chr1.3:728726-728745 | MS.gene64032:CDS | 30.0% | |
| CAATATTTATGTGTCTCTCA+TGG | + | chr1.3:727902-727921 | MS.gene64032:CDS | 30.0% | |
| CATGAGAGACACATAAATAT+TGG | - | chr1.3:727904-727923 | None:intergenic | 30.0% | |
| CATTTGTTCATCACAATGTT+AGG | - | chr1.3:727959-727978 | None:intergenic | 30.0% | |
| GAAAAATAGAGATCCAAGAT+GGG | + | chr1.3:729913-729932 | MS.gene64032:CDS | 30.0% | |
| GATAACTCATCATCCTTAAA+AGG | - | chr1.3:729301-729320 | None:intergenic | 30.0% | |
| TAATGTTTATGATTGGGAAC+AGG | + | chr1.3:728783-728802 | MS.gene64032:CDS | 30.0% | |
| TATATACCTTGAAAAGTTGG+TGG | - | chr1.3:727480-727499 | None:intergenic | 30.0% | |
| TTAAACTCTTCATTCCATTC+TGG | - | chr1.3:728724-728743 | None:intergenic | 30.0% | |
| ! | AATTATCAATGAAATGGGCT+GGG | + | chr1.3:727632-727651 | MS.gene64032:CDS | 30.0% |
| ! | AGAAAGAAAGATATAATGGG+AGG | + | chr1.3:728616-728635 | MS.gene64032:CDS | 30.0% |
| ! | AGCATGTTACTTATTTCCTA+TGG | + | chr1.3:729102-729121 | MS.gene64032:intron | 30.0% |
| ! | AGTGACCAATTTGTCAATTT+TGG | - | chr1.3:728179-728198 | None:intergenic | 30.0% |
| ! | ATAGTTGCAGTTAAAGCATT+TGG | + | chr1.3:727667-727686 | MS.gene64032:CDS | 30.0% |
| ! | ATGTTACTTATTTCCTATGG+TGG | + | chr1.3:729105-729124 | MS.gene64032:intron | 30.0% |
| ! | GGAATTTGTTCAGCAATAAT+AGG | - | chr1.3:727405-727424 | None:intergenic | 30.0% |
| !! | AACCATTGTTTTATGGCAAT+TGG | + | chr1.3:729877-729896 | MS.gene64032:intron | 30.0% |
| !! | CATCTTATTGACTCCAAAAA+TGG | + | chr1.3:730172-730191 | MS.gene64032:CDS | 30.0% |
| !! | TCAAACAAACTCTAAAACAC+CGG | - | chr1.3:729829-729848 | None:intergenic | 30.0% |
| !! | TTAAAAAGGTGCATCGATTA+CGG | - | chr1.3:727763-727782 | None:intergenic | 30.0% |
| !!! | AATTCCAACTGGTTTTTTCA+TGG | - | chr1.3:728563-728582 | None:intergenic | 30.0% |
| !!! | AGCATTAAGTTTTGAGATTC+TGG | - | chr1.3:728763-728782 | None:intergenic | 30.0% |
| !!! | GTAAGTAGTTTTGGTTCATT+TGG | - | chr1.3:729193-729212 | None:intergenic | 30.0% |
| !!! | TAATACCTTGTTTTCGAATC+AGG | + | chr1.3:730081-730100 | MS.gene64032:intron | 30.0% |
| AAAAAAGCGGCCATATTTAG+CGG | + | chr1.3:727736-727755 | MS.gene64032:intron | 35.0% | |
| AAGATTCAATTGAGCTTCAG+TGG | + | chr1.3:730196-730215 | MS.gene64032:CDS | 35.0% | |
| ACAAGAACTTGAATCCAGAA+TGG | + | chr1.3:728707-728726 | MS.gene64032:CDS | 35.0% | |
| ATAAAGTCTCTCATTGATGG+GGG | - | chr1.3:729967-729986 | None:intergenic | 35.0% | |
| ATCCATTATTTGCACCTGTA+AGG | - | chr1.3:728434-728453 | None:intergenic | 35.0% | |
| ATTTCCTGAAAACAAGTGAG+AGG | - | chr1.3:728370-728389 | None:intergenic | 35.0% | |
| CACCAATTGCCATAAAACAA+TGG | - | chr1.3:729882-729901 | None:intergenic | 35.0% | |
| CATAAAGTCTCTCATTGATG+GGG | - | chr1.3:729968-729987 | None:intergenic | 35.0% | |
| GAATTATCAATGAAATGGGC+TGG | + | chr1.3:727631-727650 | MS.gene64032:CDS | 35.0% | |
| GGAAAAATAGAGATCCAAGA+TGG | + | chr1.3:729912-729931 | MS.gene64032:CDS | 35.0% | |
| TAGATACCAGTTTACTTGTG+CGG | + | chr1.3:729716-729735 | MS.gene64032:intron | 35.0% | |
| TTAAATATAAGCCGCGCAAA+CGG | - | chr1.3:729436-729455 | None:intergenic | 35.0% | |
| TTATGTGTCTCTCATGGAAA+AGG | + | chr1.3:727908-727927 | MS.gene64032:CDS | 35.0% | |
| TTCACATGAAGAATTCCAAC+TGG | - | chr1.3:728574-728593 | None:intergenic | 35.0% | |
| TTCTCATTCTCAGGATCATT+AGG | - | chr1.3:729241-729260 | None:intergenic | 35.0% | |
| TTGAAATGTTTCACCCATCT+TGG | - | chr1.3:729929-729948 | None:intergenic | 35.0% | |
| TTGGATGTAAGATTATCAGC+AGG | + | chr1.3:728841-728860 | MS.gene64032:intron | 35.0% | |
| TTTGCGCGGCTTATATTTAA+AGG | + | chr1.3:729436-729455 | MS.gene64032:CDS | 35.0% | |
| ! | AGTTTCCTGATTCGAAAACA+AGG | - | chr1.3:730089-730108 | None:intergenic | 35.0% |
| ! | GGCATCTATGAGATTTTGTA+TGG | + | chr1.3:727312-727331 | MS.gene64032:intron | 35.0% |
| ! | TAACATTCTAAGGGTGTGTT+TGG | - | chr1.3:729031-729050 | None:intergenic | 35.0% |
| ! | TAACTGCTTTGGATCATTGA+TGG | + | chr1.3:729681-729700 | MS.gene64032:intron | 35.0% |
| ! | TTTGGTGTAAGCTCTTTCAA+TGG | - | chr1.3:729175-729194 | None:intergenic | 35.0% |
| ! | TTTTCGAATCAGGAAACTCT+TGG | + | chr1.3:730091-730110 | MS.gene64032:intron | 35.0% |
| !! | AGTGTATAGCACTGATGAAA+AGG | + | chr1.3:727597-727616 | MS.gene64032:CDS | 35.0% |
| !! | ATATCCTCTCACTTGTTTTC+AGG | + | chr1.3:728363-728382 | MS.gene64032:intron | 35.0% |
| !!! | ACTTTTAGAGTGTGTTTGGA+TGG | + | chr1.3:728866-728885 | MS.gene64032:intron | 35.0% |
| !!! | GGAAACTTTTAGAGTGTGTT+TGG | + | chr1.3:728862-728881 | MS.gene64032:intron | 35.0% |
| AAAGGCTTCAACATTATGCG+CGG | - | chr1.3:727858-727877 | None:intergenic | 40.0% | |
| CAACAGTTCAGGTATTTCTC+CGG | + | chr1.3:727698-727717 | MS.gene64032:intron | 40.0% | |
| CAAGGAAAACTAGGAACCAA+AGG | - | chr1.3:727876-727895 | None:intergenic | 40.0% | |
| CATGAAGCTGAAGATGTTGA+AGG | + | chr1.3:729394-729413 | MS.gene64032:CDS | 40.0% | |
| CCAAACTAGTTAACCACCAT+AGG | - | chr1.3:729121-729140 | None:intergenic | 40.0% | |
| CCTATGGTGGTTAACTAGTT+TGG | + | chr1.3:729118-729137 | MS.gene64032:intron | 40.0% | |
| CTTCAACATCTTCAGCTTCA+TGG | - | chr1.3:729396-729415 | None:intergenic | 40.0% | |
| GAATTCAGAAGACACCGAAA+AGG | + | chr1.3:729324-729343 | MS.gene64032:CDS | 40.0% | |
| GATAAGTGCATCCTCAAGTT+AGG | + | chr1.3:729995-730014 | MS.gene64032:intron | 40.0% | |
| GTGCTATAGTATATGCTACC+TGG | - | chr1.3:728094-728113 | None:intergenic | 40.0% | |
| TAAAGTCTCTCATTGATGGG+GGG | - | chr1.3:729966-729985 | None:intergenic | 40.0% | |
| TCAGGAAACTCTTGGATATG+TGG | + | chr1.3:730099-730118 | MS.gene64032:intron | 40.0% | |
| TTGGCGAAACAAGGAAAACT+AGG | - | chr1.3:727885-727904 | None:intergenic | 40.0% | |
| TTTGGAAAGGCTGAGAAGAT+GGG | + | chr1.3:729136-729155 | MS.gene64032:CDS | 40.0% | |
| ! | GGTGGTTAACTAGTTTGGAA+AGG | + | chr1.3:729123-729142 | MS.gene64032:intron | 40.0% |
| ! | TGTCTATTCCTGGTCTTTAC+AGG | + | chr1.3:728063-728082 | MS.gene64032:CDS | 40.0% |
| ! | TTTGGATGGCGTGAATGTTT+TGG | + | chr1.3:728880-728899 | MS.gene64032:intron | 40.0% |
| AAAAGCAAACCACCACTAGC+AGG | - | chr1.3:729364-729383 | None:intergenic | 45.0% | |
| ACTTTGCCGCACAAGTAAAC+TGG | - | chr1.3:729725-729744 | None:intergenic | 45.0% | |
| AGGCGAGGAAAGAAAAACCA+AGG | + | chr1.3:729456-729475 | MS.gene64032:CDS | 45.0% | |
| AGGGCCATGAAAAAACCAGT+TGG | + | chr1.3:728556-728575 | MS.gene64032:intron | 45.0% | |
| ATCAAATTCATTGCCGCGTC+CGG | + | chr1.3:729807-729826 | MS.gene64032:intron | 45.0% | |
| ATTTGCACCTGTAAGGCCTT+AGG | - | chr1.3:728427-728446 | None:intergenic | 45.0% | |
| CGATTACGGTCCGCTAAATA+TGG | - | chr1.3:727749-727768 | None:intergenic | 45.0% | |
| GCAGATGCAATGTCTATTCC+TGG | + | chr1.3:728053-728072 | MS.gene64032:CDS | 45.0% | |
| GCGCATAATGTTGAAGCCTT+TGG | + | chr1.3:727857-727876 | MS.gene64032:CDS | 45.0% | |
| GCGGCTTATATTTAAAGGCG+AGG | + | chr1.3:729441-729460 | MS.gene64032:CDS | 45.0% | |
| GGCCTTACAGGTGCAAATAA+TGG | + | chr1.3:728429-728448 | MS.gene64032:CDS | 45.0% | |
| GTTTGGAAAGGCTGAGAAGA+TGG | + | chr1.3:729135-729154 | MS.gene64032:intron | 45.0% | |
| TGGACAATCCTGTAAAGACC+AGG | - | chr1.3:728074-728093 | None:intergenic | 45.0% | |
| TGGTCTTTACAGGATTGTCC+AGG | + | chr1.3:728073-728092 | MS.gene64032:CDS | 45.0% | |
| ! | TCTCTGCCACCAACTTTTCA+AGG | + | chr1.3:727471-727490 | MS.gene64032:CDS | 45.0% |
| !! | AAACTCTAAAACACCGGACG+CGG | - | chr1.3:729823-729842 | None:intergenic | 45.0% |
| !!! | TTGCAGCCGCATGTTGATTT+TGG | + | chr1.3:728014-728033 | MS.gene64032:intron | 45.0% |
| ACCACACAAATCCGTTTGCG+CGG | + | chr1.3:729422-729441 | MS.gene64032:CDS | 50.0% | |
| AGAAGACACCGAAAAGGCTC+CGG | + | chr1.3:729330-729349 | MS.gene64032:CDS | 50.0% | |
| CCACGTGACTTCTCATTCTC+AGG | - | chr1.3:729250-729269 | None:intergenic | 50.0% | |
| CCTGAGAATGAGAAGTCACG+TGG | + | chr1.3:729247-729266 | MS.gene64032:CDS | 50.0% | |
| GGCAATTGGTGCAGCATGTA+AGG | + | chr1.3:729891-729910 | MS.gene64032:intron | 50.0% | |
| GTCACGTGGAGAGCTTATTG+TGG | + | chr1.3:729261-729280 | MS.gene64032:CDS | 50.0% | |
| GTGTTACCTTTGGATGCAGC+AGG | - | chr1.3:730021-730040 | None:intergenic | 50.0% | |
| TGGATTGCGAGCAACAGTTC+AGG | + | chr1.3:727687-727706 | MS.gene64032:CDS | 50.0% | |
| TTTGTGGCCTAAGGCCTTAC+AGG | + | chr1.3:728417-728436 | MS.gene64032:CDS | 50.0% | |
| ! | TGTTCCTTCCGGAGCCTTTT+CGG | - | chr1.3:729341-729360 | None:intergenic | 50.0% |
| CCACTAGCAGGTGTTCCTTC+CGG | - | chr1.3:729352-729371 | None:intergenic | 55.0% | |
| GAAGGAACACCTGCTAGTGG+TGG | + | chr1.3:729352-729371 | MS.gene64032:CDS | 55.0% | |
| GATGCAGCAGGCCTAACTTG+AGG | - | chr1.3:730009-730028 | None:intergenic | 55.0% | |
| GTTAGGCCTGCTGCATCCAA+AGG | + | chr1.3:730012-730031 | MS.gene64032:intron | 55.0% | |
| CCGGAAGGAACACCTGCTAG+TGG | + | chr1.3:729349-729368 | MS.gene64032:CDS | 60.0% | |
| GACACCGAAAAGGCTCCGGA+AGG | + | chr1.3:729334-729353 | MS.gene64032:CDS | 60.0% | |
| ! | GCCGCGCAAACGGATTTGTG+TGG | - | chr1.3:729426-729445 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 727273 | 730237 | 727273 | ID=MS.gene64032 |
| chr1.3 | mRNA | 727273 | 730237 | 727273 | ID=MS.gene64032.t1;Parent=MS.gene64032 |
| chr1.3 | exon | 727273 | 727275 | 727273 | ID=MS.gene64032.t1.exon1;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 727273 | 727275 | 727273 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 727369 | 727492 | 727369 | ID=MS.gene64032.t1.exon2;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 727369 | 727492 | 727369 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 727590 | 727708 | 727590 | ID=MS.gene64032.t1.exon3;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 727590 | 727708 | 727590 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 727828 | 727929 | 727828 | ID=MS.gene64032.t1.exon4;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 727828 | 727929 | 727828 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 728020 | 728094 | 728020 | ID=MS.gene64032.t1.exon5;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 728020 | 728094 | 728020 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 728385 | 728461 | 728385 | ID=MS.gene64032.t1.exon6;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 728385 | 728461 | 728385 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 728558 | 728804 | 728558 | ID=MS.gene64032.t1.exon7;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 728558 | 728804 | 728558 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 729136 | 729477 | 729136 | ID=MS.gene64032.t1.exon8;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 729136 | 729477 | 729136 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 729905 | 729952 | 729905 | ID=MS.gene64032.t1.exon9;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 729905 | 729952 | 729905 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| chr1.3 | exon | 730103 | 730237 | 730103 | ID=MS.gene64032.t1.exon10;Parent=MS.gene64032.t1 |
| chr1.3 | CDS | 730103 | 730237 | 730103 | ID=cds.MS.gene64032.t1;Parent=MS.gene64032.t1 |
| Gene Sequence |
| Protein sequence |
