Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64275.t1 | XP_013467157.1 | 95.7 | 423 | 16 | 1 | 3 | 425 | 7 | 427 | 2.60E-235 | 824.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64275.t1 | Q3MHV9 | 25.7 | 366 | 219 | 10 | 95 | 409 | 90 | 453 | 9.4e-29 | 129.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64275.t1 | A0A072VIB5 | 95.7 | 423 | 16 | 1 | 3 | 425 | 7 | 427 | 1.8e-235 | 824.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049133 | MS.gene64275 | PPI |
| MS.gene64275 | MS.gene04773 | PPI |
| MS.gene64275 | MS.gene015739 | PPI |
| MS.gene05930 | MS.gene64275 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64275.t1 | MTR_1g046480 | 95.745 | 423 | 16 | 1 | 3 | 425 | 7 | 427 | 0.0 | 831 |
| MS.gene64275.t1 | MTR_8g103740 | 52.394 | 355 | 166 | 3 | 47 | 400 | 34 | 386 | 8.57e-129 | 378 |
| MS.gene64275.t1 | MTR_6g086060 | 49.468 | 376 | 184 | 5 | 39 | 410 | 28 | 401 | 7.07e-127 | 372 |
| MS.gene64275.t1 | MTR_8g103740 | 52.174 | 299 | 141 | 2 | 109 | 406 | 1 | 298 | 2.19e-114 | 337 |
| MS.gene64275.t1 | MTR_8g103740 | 53.140 | 207 | 97 | 0 | 200 | 406 | 1 | 207 | 1.04e-80 | 248 |
| MS.gene64275.t1 | MTR_2g022060 | 29.843 | 382 | 243 | 5 | 47 | 406 | 28 | 406 | 1.24e-54 | 187 |
| MS.gene64275.t1 | MTR_7g057720 | 28.796 | 382 | 246 | 8 | 47 | 406 | 31 | 408 | 2.97e-46 | 164 |
| MS.gene64275.t1 | MTR_7g057720 | 27.456 | 397 | 249 | 8 | 47 | 406 | 31 | 425 | 4.43e-43 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64275.t1 | AT2G33205 | 60.238 | 420 | 163 | 3 | 1 | 417 | 1 | 419 | 0.0 | 520 |
| MS.gene64275.t1 | AT2G33205 | 59.953 | 422 | 163 | 4 | 1 | 417 | 1 | 421 | 0.0 | 514 |
| MS.gene64275.t1 | AT2G33205 | 59.953 | 422 | 163 | 4 | 1 | 417 | 1 | 421 | 0.0 | 514 |
| MS.gene64275.t1 | AT2G33205 | 61.055 | 398 | 149 | 4 | 1 | 393 | 1 | 397 | 8.05e-174 | 492 |
| MS.gene64275.t1 | AT2G33205 | 59.626 | 374 | 145 | 4 | 1 | 369 | 1 | 373 | 9.66e-157 | 447 |
| MS.gene64275.t1 | AT2G33205 | 63.777 | 323 | 113 | 3 | 98 | 417 | 5 | 326 | 3.84e-146 | 419 |
| MS.gene64275.t1 | AT2G33205 | 64.423 | 312 | 107 | 3 | 109 | 417 | 1 | 311 | 3.67e-143 | 411 |
| MS.gene64275.t1 | AT2G33205 | 57.015 | 335 | 140 | 3 | 1 | 332 | 1 | 334 | 4.75e-131 | 381 |
| MS.gene64275.t1 | AT2G33205 | 57.015 | 335 | 140 | 3 | 1 | 332 | 1 | 334 | 4.75e-131 | 381 |
| MS.gene64275.t1 | AT3G24460 | 48.901 | 364 | 181 | 2 | 47 | 406 | 40 | 402 | 1.67e-128 | 377 |
| MS.gene64275.t1 | AT3G24460 | 48.901 | 364 | 181 | 2 | 47 | 406 | 40 | 402 | 1.67e-128 | 377 |
| MS.gene64275.t1 | AT4G13345 | 49.167 | 360 | 182 | 1 | 47 | 406 | 33 | 391 | 2.44e-126 | 371 |
| MS.gene64275.t1 | AT4G13345 | 48.611 | 360 | 184 | 1 | 47 | 406 | 33 | 391 | 3.18e-125 | 368 |
| MS.gene64275.t1 | AT4G13345 | 48.611 | 360 | 184 | 1 | 47 | 406 | 33 | 391 | 3.18e-125 | 368 |
| MS.gene64275.t1 | AT4G13345 | 49.280 | 347 | 175 | 1 | 47 | 393 | 33 | 378 | 5.30e-120 | 355 |
| MS.gene64275.t1 | AT4G13345 | 47.678 | 323 | 168 | 1 | 47 | 369 | 33 | 354 | 1.69e-104 | 314 |
| MS.gene64275.t1 | AT4G13345 | 46.063 | 254 | 136 | 1 | 47 | 300 | 33 | 285 | 6.07e-71 | 226 |
| MS.gene64275.t1 | AT4G13345 | 46.063 | 254 | 136 | 1 | 47 | 300 | 33 | 285 | 6.07e-71 | 226 |
| MS.gene64275.t1 | AT3G06170 | 29.921 | 381 | 243 | 5 | 47 | 406 | 29 | 406 | 3.26e-51 | 177 |
| MS.gene64275.t1 | AT1G16180 | 27.676 | 383 | 251 | 6 | 47 | 406 | 31 | 410 | 1.48e-42 | 155 |
| MS.gene64275.t1 | AT1G16180 | 27.676 | 383 | 251 | 6 | 47 | 406 | 31 | 410 | 1.48e-42 | 155 |
Find 68 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATTCCAAATGCTTTC+AGG | 0.181911 | 1.3:+28161069 | MS.gene64275:CDS |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1.3:-28160850 | None:intergenic |
| CTTCACGCCCGTTATTATTT+TGG | 0.231654 | 1.3:+28158703 | MS.gene64275:CDS |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1.3:-28161032 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1.3:+28161030 | MS.gene64275:CDS |
| TCACAATTTGTACAAATATA+TGG | 0.265815 | 1.3:+28159604 | MS.gene64275:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1.3:-28159884 | None:intergenic |
| GAGACAAATAACCAAGAAAA+AGG | 0.331499 | 1.3:+28160861 | MS.gene64275:CDS |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1.3:+28160200 | MS.gene64275:CDS |
| GGGGTTCTCCGCGTGAGTTT+AGG | 0.355969 | 1.3:+28159163 | MS.gene64275:CDS |
| GCGGTTCACCTGAAAGCATT+TGG | 0.374302 | 1.3:-28161077 | None:intergenic |
| CAATTGCAAATATGGCAATA+AGG | 0.374529 | 1.3:-28161024 | None:intergenic |
| GGAAGAAGTAATGTCTTCAT+TGG | 0.374967 | 1.3:+28158639 | MS.gene64275:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.385025 | 1.3:+28159109 | MS.gene64275:intron |
| GAAATTCTTGGCATTCTAGA+TGG | 0.388277 | 1.3:+28159524 | MS.gene64275:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1.3:-28160843 | None:intergenic |
| TTCTAGATGGTGGGAATTCA+AGG | 0.391262 | 1.3:+28159537 | MS.gene64275:CDS |
| TATGTGAAGGTAGAAATTCT+TGG | 0.392396 | 1.3:+28159512 | MS.gene64275:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1.3:-28161784 | None:intergenic |
| TGATAGGCAGAGTGTTCCTT+TGG | 0.398840 | 1.3:+28158618 | MS.gene64275:CDS |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1.3:+28161408 | MS.gene64275:CDS |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1.3:-28161056 | None:intergenic |
| TCATTTGGTGGAATAAGTAC+TGG | 0.422140 | 1.3:+28159892 | MS.gene64275:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1.3:+28161407 | MS.gene64275:CDS |
| ATAGTATACCTTTGAATGTA+AGG | 0.434180 | 1.3:-28160229 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1.3:+28159118 | MS.gene64275:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1.3:+28161346 | MS.gene64275:CDS |
| TTTATATTGGTGCTATATGT+GGG | 0.469364 | 1.3:+28160103 | MS.gene64275:CDS |
| ATATTGTTCATGTTAGTGAT+AGG | 0.469895 | 1.3:+28158602 | MS.gene64275:CDS |
| TATAACGCCAAAATAATAAC+GGG | 0.476345 | 1.3:-28158710 | None:intergenic |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1.3:+28161789 | MS.gene64275:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1.3:+28160221 | MS.gene64275:CDS |
| ATATAACGCCAAAATAATAA+CGG | 0.501236 | 1.3:-28158711 | None:intergenic |
| ATGGACAAAGTGTTCTACCT+TGG | 0.514469 | 1.3:+28158773 | MS.gene64275:CDS |
| TTCTTGGCATTCTAGATGGT+GGG | 0.524264 | 1.3:+28159528 | MS.gene64275:CDS |
| TATGTTGGTGTGCAATCAGA+AGG | 0.528364 | 1.3:+28160369 | MS.gene64275:CDS |
| GCAGGCGAGATAGCTCGTAT+TGG | 0.533542 | 1.3:+28159734 | MS.gene64275:intron |
| TTAGGTGGAGCATTGATGTT+GGG | 0.537476 | 1.3:+28161542 | MS.gene64275:intron |
| TATATTTGTACAAATTGTGA+AGG | 0.543697 | 1.3:-28159601 | None:intergenic |
| AATTGTGAAGGGATGAAGAA+TGG | 0.550221 | 1.3:-28159589 | None:intergenic |
| ATTCTTGGCATTCTAGATGG+TGG | 0.551224 | 1.3:+28159527 | MS.gene64275:CDS |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1.3:-28161389 | None:intergenic |
| GAGATAGCTCGTATTGGCGC+AGG | 0.565164 | 1.3:+28159740 | MS.gene64275:CDS |
| GAAGACATTACTTCTTCCAA+AGG | 0.571757 | 1.3:-28158634 | None:intergenic |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1.3:-28160847 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.585126 | 1.3:+28160305 | MS.gene64275:intron |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1.3:+28161557 | MS.gene64275:CDS |
| GATACAAATACAACTATGCA+AGG | 0.590595 | 1.3:+28161817 | MS.gene64275:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1.3:+28158737 | MS.gene64275:CDS |
| ATTAGGTGGAGCATTGATGT+TGG | 0.592264 | 1.3:+28161541 | MS.gene64275:intron |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1.3:+28161578 | MS.gene64275:CDS |
| ATATTTGTACAAATTGTGAA+GGG | 0.601189 | 1.3:-28159600 | None:intergenic |
| GTCTTCATTGGAGTTAAACA+AGG | 0.601463 | 1.3:+28158651 | MS.gene64275:CDS |
| GGTGGAGCATTGATGTTGGG+TGG | 0.602838 | 1.3:+28161545 | MS.gene64275:intron |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1.3:-28158765 | None:intergenic |
| TTGAAGAATGAGTGCATCTG+AGG | 0.616765 | 1.3:+28158564 | None:intergenic |
| ATAGACTTACTACGAATCCA+AGG | 0.618081 | 1.3:-28158790 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1.3:+28161564 | MS.gene64275:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1.3:+28159499 | MS.gene64275:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1.3:-28161062 | None:intergenic |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1.3:+28158565 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1.3:-28161375 | None:intergenic |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1.3:-28160076 | None:intergenic |
| GTAAGAAGCCATAATTCCTG+AGG | 0.670534 | 1.3:-28160336 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1.3:-28160196 | None:intergenic |
| AGATAGCTCGTATTGGCGCA+GGG | 0.682305 | 1.3:+28159741 | MS.gene64275:CDS |
| CAAAGCATCCTAAACTCACG+CGG | 0.689887 | 1.3:-28159171 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1.3:+28161558 | MS.gene64275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAGAAAAAATACA+AGG | - | chr1.3:28160293-28160312 | None:intergenic | 10.0% |
| !! | AATAAATTGTAAGAATTAAG+AGG | - | chr1.3:28159649-28159668 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1.3:28161749-28161768 | MS.gene64275:intron | 15.0% |
| !!! | ACAAAAATTTCTGAAATTAT+TGG | - | chr1.3:28161118-28161137 | None:intergenic | 15.0% |
| !!! | TAACTAAAACTGATTTAAAA+AGG | - | chr1.3:28160417-28160436 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | + | chr1.3:28160295-28160314 | MS.gene64275:intron | 15.0% |
| !!! | TTCATTTTCAACTTTATTTT+TGG | - | chr1.3:28161326-28161345 | None:intergenic | 15.0% |
| !!! | TTTGTTTTCTAAAATATCTT+TGG | + | chr1.3:28159681-28159700 | MS.gene64275:intron | 15.0% |
| !! | AAAAACATTGAAGTGTATTA+TGG | - | chr1.3:28159714-28159733 | None:intergenic | 20.0% |
| !! | AAAAATCATCACATCTTAAA+AGG | - | chr1.3:28161483-28161502 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1.3:28161727-28161746 | None:intergenic | 20.0% |
| !! | AATTTGTACAAATATATGGT+TGG | + | chr1.3:28159608-28159627 | MS.gene64275:intron | 20.0% |
| !! | ACTAATTATTTCAACATGTA+CGG | - | chr1.3:28161283-28161302 | None:intergenic | 20.0% |
| !! | ACTGGTAATAATATGAAAAA+TGG | + | chr1.3:28159262-28159281 | MS.gene64275:intron | 20.0% |
| !! | AGGAATAATCATAAAATCTA+AGG | + | chr1.3:28159962-28159981 | MS.gene64275:intron | 20.0% |
| !! | ATATAACGCCAAAATAATAA+CGG | - | chr1.3:28158714-28158733 | None:intergenic | 20.0% |
| !! | ATATTTGTACAAATTGTGAA+GGG | - | chr1.3:28159603-28159622 | None:intergenic | 20.0% |
| !! | CTACAATATAAAAGTCTTAA+AGG | - | chr1.3:28158960-28158979 | None:intergenic | 20.0% |
| !! | GATAATTGAAAGAAAGAAAA+TGG | + | chr1.3:28160513-28160532 | MS.gene64275:intron | 20.0% |
| !! | TATATTTGTACAAATTGTGA+AGG | - | chr1.3:28159604-28159623 | None:intergenic | 20.0% |
| !! | TCACAATTTGTACAAATATA+TGG | + | chr1.3:28159604-28159623 | MS.gene64275:CDS | 20.0% |
| !! | TGCATTATTAAGATACTATA+AGG | - | chr1.3:28161510-28161529 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1.3:28161668-28161687 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTATGAGATTA+TGG | - | chr1.3:28160981-28161000 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1.3:28161667-28161686 | None:intergenic | 20.0% |
| !!! | TATTTTTGGAAAACTGTTAA+AGG | - | chr1.3:28161312-28161331 | None:intergenic | 20.0% |
| !!! | TCAAAAGTGACAATATTTTT+AGG | + | chr1.3:28160655-28160674 | MS.gene64275:intron | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1.3:28159561-28159580 | MS.gene64275:CDS | 20.0% |
| !!! | TTAATATATTTTTCATCGCA+TGG | + | chr1.3:28160172-28160191 | MS.gene64275:CDS | 20.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1.3:28159499-28159518 | MS.gene64275:CDS | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1.3:28161726-28161745 | None:intergenic | 25.0% |
| ! | AAGGAATGATGTGATAAATT+AGG | - | chr1.3:28161464-28161483 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | - | chr1.3:28159451-28159470 | None:intergenic | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | - | chr1.3:28160232-28160251 | None:intergenic | 25.0% |
| ! | ATATTGTTCATGTTAGTGAT+AGG | + | chr1.3:28158602-28158621 | MS.gene64275:CDS | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1.3:28161728-28161747 | None:intergenic | 25.0% |
| ! | CTAATTATTTCAACATGTAC+GGG | - | chr1.3:28161282-28161301 | None:intergenic | 25.0% |
| ! | GATATCTGTAAATAGAGAAA+AGG | - | chr1.3:28159101-28159120 | None:intergenic | 25.0% |
| ! | GTTGTAGTTAATGTTTACAT+AGG | + | chr1.3:28159829-28159848 | MS.gene64275:intron | 25.0% |
| ! | TACATATTATTATTGCTGCA+AGG | + | chr1.3:28159942-28159961 | MS.gene64275:intron | 25.0% |
| ! | TATAACGCCAAAATAATAAC+GGG | - | chr1.3:28158713-28158732 | None:intergenic | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1.3:28159887-28159906 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1.3:28159109-28159128 | MS.gene64275:intron | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | + | chr1.3:28159141-28159160 | MS.gene64275:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | + | chr1.3:28159143-28159162 | MS.gene64275:CDS | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | + | chr1.3:28160354-28160373 | MS.gene64275:CDS | 25.0% |
| !! | GACTAGTTGTATTAATTAGA+AGG | + | chr1.3:28160596-28160615 | MS.gene64275:intron | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | + | chr1.3:28159142-28159161 | MS.gene64275:CDS | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAA+TGG | - | chr1.3:28160489-28160508 | None:intergenic | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1.3:28161666-28161685 | None:intergenic | 25.0% |
| !!! | AATATTTTTTGCGAATGTGA+CGG | + | chr1.3:28160681-28160700 | MS.gene64275:intron | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | + | chr1.3:28160090-28160109 | MS.gene64275:CDS | 25.0% |
| !!! | TTTATATTGGTGCTATATGT+GGG | + | chr1.3:28160103-28160122 | MS.gene64275:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | + | chr1.3:28160102-28160121 | MS.gene64275:CDS | 25.0% |
| AAAATGCTAGTGTCTCAAAT+TGG | - | chr1.3:28158829-28158848 | None:intergenic | 30.0% | |
| AACCAAGAAAAAGGAAATAG+TGG | + | chr1.3:28160870-28160889 | MS.gene64275:CDS | 30.0% | |
| AAGAAAAAGGAAATAGTGGT+TGG | + | chr1.3:28160874-28160893 | MS.gene64275:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1.3:28161436-28161455 | MS.gene64275:intron | 30.0% | |
| AATACAAGGAATGAAAAACC+AGG | - | chr1.3:28160279-28160298 | None:intergenic | 30.0% | |
| AATGCACATTTCATACCATT+AGG | + | chr1.3:28161524-28161543 | MS.gene64275:intron | 30.0% | |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1.3:28160199-28160218 | None:intergenic | 30.0% | |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1.3:28161035-28161054 | None:intergenic | 30.0% | |
| AGCTAGATTAGATTTGTGTT+TGG | - | chr1.3:28159024-28159043 | None:intergenic | 30.0% | |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1.3:28159118-28159137 | MS.gene64275:CDS | 30.0% | |
| ATGGATACATTCTAATCGTA+TGG | - | chr1.3:28160962-28160981 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1.3:28161027-28161046 | None:intergenic | 30.0% | |
| CTTTCATTCACTTGAAGTTA+TGG | + | chr1.3:28159786-28159805 | MS.gene64275:intron | 30.0% | |
| GAGACAAATAACCAAGAAAA+AGG | + | chr1.3:28160861-28160880 | MS.gene64275:CDS | 30.0% | |
| GATACAAATACAACTATGCA+AGG | + | chr1.3:28161817-28161836 | MS.gene64275:CDS | 30.0% | |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1.3:28160853-28160872 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1.3:28160305-28160324 | MS.gene64275:intron | 30.0% | |
| TACATTGACATGAAAAATCC+TGG | + | chr1.3:28160258-28160277 | MS.gene64275:intron | 30.0% | |
| TATGTGAAGGTAGAAATTCT+TGG | + | chr1.3:28159512-28159531 | MS.gene64275:CDS | 30.0% | |
| TATTGTGTATGAACTAGTTG+TGG | - | chr1.3:28160937-28160956 | None:intergenic | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1.3:28161408-28161427 | MS.gene64275:CDS | 30.0% | |
| TGCTTTGTATCCTTCAATTA+TGG | + | chr1.3:28159187-28159206 | MS.gene64275:intron | 30.0% | |
| TGTTTATAATAGTGACCAGA+GGG | + | chr1.3:28161135-28161154 | MS.gene64275:intron | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1.3:28161407-28161426 | MS.gene64275:CDS | 30.0% | |
| TTGTTTATAATAGTGACCAG+AGG | + | chr1.3:28161134-28161153 | MS.gene64275:intron | 30.0% | |
| ! | AAAACTTCTATCGAAAGTGT+CGG | + | chr1.3:28159323-28159342 | MS.gene64275:intron | 30.0% |
| ! | AACCACTATTTCCTTTTTCT+TGG | - | chr1.3:28160875-28160894 | None:intergenic | 30.0% |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1.3:28160200-28160219 | MS.gene64275:CDS | 30.0% |
| ! | ACTGATTTAAAAAGGAGACA+AGG | - | chr1.3:28160409-28160428 | None:intergenic | 30.0% |
| ! | AGAATGCTAAGATTAGTCAT+TGG | + | chr1.3:28159064-28159083 | MS.gene64275:intron | 30.0% |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1.3:28159877-28159896 | MS.gene64275:CDS | 30.0% |
| ! | TAGATTTGTGTTTGGTTTCA+CGG | - | chr1.3:28159016-28159035 | None:intergenic | 30.0% |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1.3:28160328-28160347 | MS.gene64275:CDS | 30.0% |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1.3:28158737-28158756 | MS.gene64275:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1.3:28159880-28159899 | MS.gene64275:CDS | 30.0% |
| ! | TGATTGTTTTCATTCATTGG+GGG | + | chr1.3:28159144-28159163 | MS.gene64275:CDS | 30.0% |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1.3:28161030-28161049 | MS.gene64275:CDS | 30.0% |
| !! | ATACACTTCAATGTTTTTGC+AGG | + | chr1.3:28159716-28159735 | MS.gene64275:intron | 30.0% |
| !! | ATTTTAAAGACTATACCCTC+TGG | - | chr1.3:28161153-28161172 | None:intergenic | 30.0% |
| !! | TTTGAGAGATTAAGTTGAGA+TGG | - | chr1.3:28161194-28161213 | None:intergenic | 30.0% |
| AAATGCAGACATTTCTGTGA+AGG | - | chr1.3:28160043-28160062 | None:intergenic | 35.0% | |
| AACAATTGCTTTCGATAACG+AGG | - | chr1.3:28159383-28159402 | None:intergenic | 35.0% | |
| AACTAGTTGTGGAGGTAAAA+TGG | - | chr1.3:28160926-28160945 | None:intergenic | 35.0% | |
| AAGCATTCATACATAGACAC+TGG | + | chr1.3:28159244-28159263 | MS.gene64275:intron | 35.0% | |
| AAGTCTCTTCTCTTGTTAAC+AGG | + | chr1.3:28160997-28161016 | MS.gene64275:intron | 35.0% | |
| AAGTGATTGAATGCAAGTGT+CGG | + | chr1.3:28159285-28159304 | MS.gene64275:intron | 35.0% | |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1.3:28161722-28161741 | None:intergenic | 35.0% | |
| AATTGTGAAGGGATGAAGAA+TGG | - | chr1.3:28159592-28159611 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1.3:28161787-28161806 | None:intergenic | 35.0% | |
| AGTCTCTTCTCTTGTTAACA+GGG | + | chr1.3:28160998-28161017 | MS.gene64275:intron | 35.0% | |
| ATAGACTTACTACGAATCCA+AGG | - | chr1.3:28158793-28158812 | None:intergenic | 35.0% | |
| ATTTCTGTGAAGGCTATTGA+AGG | - | chr1.3:28160033-28160052 | None:intergenic | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1.3:28160850-28160869 | None:intergenic | 35.0% | |
| CAGCAGAATTCATACAATTG+CGG | + | chr1.3:28158902-28158921 | MS.gene64275:intron | 35.0% | |
| CATTAACTACAACAGTTAGC+TGG | - | chr1.3:28159822-28159841 | None:intergenic | 35.0% | |
| CTGTCAACTTCAAATCATCA+TGG | + | chr1.3:28160808-28160827 | MS.gene64275:intron | 35.0% | |
| GAAATTCTTGGCATTCTAGA+TGG | + | chr1.3:28159524-28159543 | MS.gene64275:CDS | 35.0% | |
| GAACACTTTGTCCATAATCA+CGG | - | chr1.3:28158768-28158787 | None:intergenic | 35.0% | |
| GAAGACATTACTTCTTCCAA+AGG | - | chr1.3:28158637-28158656 | None:intergenic | 35.0% | |
| GATGATATTCCTTACAGCTA+TGG | + | chr1.3:28161346-28161365 | MS.gene64275:CDS | 35.0% | |
| GGAAGAAGTAATGTCTTCAT+TGG | + | chr1.3:28158639-28158658 | MS.gene64275:CDS | 35.0% | |
| GGTCATATCCTTACATTCAA+AGG | + | chr1.3:28160221-28160240 | MS.gene64275:CDS | 35.0% | |
| GTCTTCATTGGAGTTAAACA+AGG | + | chr1.3:28158651-28158670 | MS.gene64275:CDS | 35.0% | |
| TAAAAAGGAGACAAGGATGA+AGG | - | chr1.3:28160402-28160421 | None:intergenic | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1.3:28161358-28161377 | None:intergenic | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1.3:28161789-28161808 | MS.gene64275:CDS | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | + | chr1.3:28159485-28159504 | MS.gene64275:CDS | 35.0% | |
| TTTCTGTGAAGGCTATTGAA+GGG | - | chr1.3:28160032-28160051 | None:intergenic | 35.0% | |
| ! | TCACAGAAATGTCTGCATTT+TGG | + | chr1.3:28160043-28160062 | MS.gene64275:intron | 35.0% |
| ! | TCATTTGGTGGAATAAGTAC+TGG | + | chr1.3:28159892-28159911 | MS.gene64275:CDS | 35.0% |
| !! | AAATGTCTGCATTTTGGTAC+AGG | + | chr1.3:28160049-28160068 | MS.gene64275:intron | 35.0% |
| !! | AGCATTTTTGTTTCCATCAC+AGG | + | chr1.3:28158841-28158860 | MS.gene64275:intron | 35.0% |
| !! | ATTTTTGTTTCCATCACAGG+TGG | + | chr1.3:28158844-28158863 | MS.gene64275:intron | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1.3:28161069-28161088 | MS.gene64275:CDS | 35.0% |
| AACATCAATGCTCCACCTAA+TGG | - | chr1.3:28161542-28161561 | None:intergenic | 40.0% | |
| ACGGTTATTATGAGACAGAG+GGG | + | chr1.3:28160700-28160719 | MS.gene64275:intron | 40.0% | |
| AGACATCACAACAGCAATTG+CGG | - | chr1.3:28158928-28158947 | None:intergenic | 40.0% | |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1.3:28161557-28161576 | MS.gene64275:CDS | 40.0% | |
| ATTATGGCACATGCTTCATG+AGG | + | chr1.3:28159203-28159222 | MS.gene64275:intron | 40.0% | |
| ATTCTTGGCATTCTAGATGG+TGG | + | chr1.3:28159527-28159546 | MS.gene64275:CDS | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1.3:28161723-28161742 | None:intergenic | 40.0% | |
| CAGACGAAGAAACGAAAAAG+AGG | + | chr1.3:28159919-28159938 | MS.gene64275:CDS | 40.0% | |
| GAAGCATGTGCCATAATTGA+AGG | - | chr1.3:28159200-28159219 | None:intergenic | 40.0% | |
| GACGGTTATTATGAGACAGA+GGG | + | chr1.3:28160699-28160718 | MS.gene64275:intron | 40.0% | |
| GCACATTTCATACCATTAGG+TGG | + | chr1.3:28161527-28161546 | MS.gene64275:intron | 40.0% | |
| GTAAGAAGCCATAATTCCTG+AGG | - | chr1.3:28160339-28160358 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1.3:28160369-28160388 | MS.gene64275:CDS | 40.0% | |
| TGAATTCTGCTGCAGTATCA+AGG | - | chr1.3:28158894-28158913 | None:intergenic | 40.0% | |
| TGACGGTTATTATGAGACAG+AGG | + | chr1.3:28160698-28160717 | MS.gene64275:intron | 40.0% | |
| TGTGTATGAACTAGTTGTGG+AGG | - | chr1.3:28160934-28160953 | None:intergenic | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | - | chr1.3:28160079-28160098 | None:intergenic | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1.3:28161558-28161577 | MS.gene64275:CDS | 40.0% | |
| TTCTTGGCATTCTAGATGGT+GGG | + | chr1.3:28159528-28159547 | MS.gene64275:CDS | 40.0% | |
| ! | ATGGACAAAGTGTTCTACCT+TGG | + | chr1.3:28158773-28158792 | MS.gene64275:CDS | 40.0% |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1.3:28161360-28161379 | MS.gene64275:CDS | 40.0% |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1.3:28160320-28160339 | MS.gene64275:CDS | 40.0% |
| ! | CTTCACGCCCGTTATTATTT+TGG | + | chr1.3:28158703-28158722 | MS.gene64275:CDS | 40.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | + | chr1.3:28158754-28158773 | MS.gene64275:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1.3:28161373-28161392 | MS.gene64275:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1.3:28161372-28161391 | MS.gene64275:CDS | 40.0% |
| !! | ATTAGGTGGAGCATTGATGT+TGG | + | chr1.3:28161541-28161560 | MS.gene64275:intron | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | - | chr1.3:28159921-28159940 | None:intergenic | 40.0% |
| !! | TTAGGTGGAGCATTGATGTT+GGG | + | chr1.3:28161542-28161561 | MS.gene64275:intron | 40.0% |
| !! | TTCTAGATGGTGGGAATTCA+AGG | + | chr1.3:28159537-28159556 | MS.gene64275:CDS | 40.0% |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1.3:28161059-28161078 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1.3:28161564-28161583 | MS.gene64275:CDS | 45.0% | |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1.3:28161392-28161411 | None:intergenic | 45.0% | |
| TTTCGATAACGAGGATCCTG+TGG | - | chr1.3:28159374-28159393 | None:intergenic | 45.0% | |
| ! | CAAAGCATCCTAAACTCACG+CGG | - | chr1.3:28159174-28159193 | None:intergenic | 45.0% |
| ! | CGATTTTACATTTCGCCACG+CGG | + | chr1.3:28160536-28160555 | MS.gene64275:intron | 45.0% |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1.3:28161065-28161084 | None:intergenic | 45.0% |
| ! | TGATAGGCAGAGTGTTCCTT+TGG | + | chr1.3:28158618-28158637 | MS.gene64275:CDS | 45.0% |
| ! | TTTTGGTACAGGTGCTCCTT+TGG | + | chr1.3:28160060-28160079 | MS.gene64275:intron | 45.0% |
| ACAATCGCAACCACCTGTGA+TGG | - | chr1.3:28158857-28158876 | None:intergenic | 50.0% | |
| AGATACCCGTGCTACAACAC+GGG | - | chr1.3:28160575-28160594 | None:intergenic | 50.0% | |
| ATCACAGGTGGTTGCGATTG+TGG | + | chr1.3:28158856-28158875 | MS.gene64275:intron | 50.0% | |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1.3:28161378-28161397 | None:intergenic | 50.0% | |
| GAGATACCCGTGCTACAACA+CGG | - | chr1.3:28160576-28160595 | None:intergenic | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1.3:28161578-28161597 | MS.gene64275:CDS | 50.0% | |
| GTATTATAGCCCACTGCCAC+AGG | + | chr1.3:28159355-28159374 | MS.gene64275:intron | 50.0% | |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1.3:28160846-28160865 | None:intergenic | 50.0% | |
| TTGGAGAAGAGTCCGAAGAG+CGG | - | chr1.3:28161099-28161118 | None:intergenic | 50.0% | |
| ! | AGATAGCTCGTATTGGCGCA+GGG | + | chr1.3:28159741-28159760 | MS.gene64275:CDS | 50.0% |
| ! | CTTTCAGGTGAACCGCTCTT+CGG | + | chr1.3:28161084-28161103 | MS.gene64275:intron | 50.0% |
| !! | GCGGTTCACCTGAAAGCATT+TGG | - | chr1.3:28161080-28161099 | None:intergenic | 50.0% |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1.3:28161046-28161065 | MS.gene64275:CDS | 50.0% |
| AACGAGGATCCTGTGGCAGT+GGG | - | chr1.3:28159367-28159386 | None:intergenic | 55.0% | |
| GCAGGCGAGATAGCTCGTAT+TGG | + | chr1.3:28159734-28159753 | MS.gene64275:intron | 55.0% | |
| GTGCTACAACACGGGTAGCA+CGG | - | chr1.3:28160567-28160586 | None:intergenic | 55.0% | |
| GTGCTACCCGTGTTGTAGCA+CGG | + | chr1.3:28160566-28160585 | MS.gene64275:intron | 55.0% | |
| TAACGAGGATCCTGTGGCAG+TGG | - | chr1.3:28159368-28159387 | None:intergenic | 55.0% | |
| TGCTACCCGTGTTGTAGCAC+GGG | + | chr1.3:28160567-28160586 | MS.gene64275:intron | 55.0% | |
| ! | GAGATAGCTCGTATTGGCGC+AGG | + | chr1.3:28159740-28159759 | MS.gene64275:CDS | 55.0% |
| !! | GGTGGAGCATTGATGTTGGG+TGG | + | chr1.3:28161545-28161564 | MS.gene64275:intron | 55.0% |
| GGGGTTCTCCGCGTGAGTTT+AGG | + | chr1.3:28159163-28159182 | MS.gene64275:CDS | 60.0% | |
| GGTAGCACGGCTGCACCGCG+TGG | - | chr1.3:28160554-28160573 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 28158571 | 28161864 | 28158571 | ID=MS.gene64275 |
| chr1.3 | mRNA | 28158571 | 28161864 | 28158571 | ID=MS.gene64275.t1;Parent=MS.gene64275 |
| chr1.3 | exon | 28158571 | 28158802 | 28158571 | ID=MS.gene64275.t1.exon1;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28158571 | 28158802 | 28158571 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28159116 | 28159192 | 28159116 | ID=MS.gene64275.t1.exon2;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28159116 | 28159192 | 28159116 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28159466 | 28159625 | 28159466 | ID=MS.gene64275.t1.exon3;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28159466 | 28159625 | 28159466 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28159738 | 28159762 | 28159738 | ID=MS.gene64275.t1.exon4;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28159738 | 28159762 | 28159738 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28159851 | 28159940 | 28159851 | ID=MS.gene64275.t1.exon5;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28159851 | 28159940 | 28159851 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28160071 | 28160242 | 28160071 | ID=MS.gene64275.t1.exon6;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28160071 | 28160242 | 28160071 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28160317 | 28160390 | 28160317 | ID=MS.gene64275.t1.exon7;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28160317 | 28160390 | 28160317 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28160839 | 28160908 | 28160839 | ID=MS.gene64275.t1.exon8;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28160839 | 28160908 | 28160839 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28161019 | 28161090 | 28161019 | ID=MS.gene64275.t1.exon9;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28161019 | 28161090 | 28161019 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28161319 | 28161452 | 28161319 | ID=MS.gene64275.t1.exon10;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28161319 | 28161452 | 28161319 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28161546 | 28161619 | 28161546 | ID=MS.gene64275.t1.exon11;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28161546 | 28161619 | 28161546 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| chr1.3 | exon | 28161767 | 28161864 | 28161767 | ID=MS.gene64275.t1.exon12;Parent=MS.gene64275.t1 |
| chr1.3 | CDS | 28161767 | 28161864 | 28161767 | ID=cds.MS.gene64275.t1;Parent=MS.gene64275.t1 |
| Gene Sequence |
| Protein sequence |
