AlfalfaGEDB | MS.gene64418

M. sativa cultivar XinJiangDaYe / MS.gene64418

KEGG: -
GO: -
PFAM: PF07011.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64418.t1	XP_013463516.1	100	114	0	0	1	114	1	114	2.90E-40	174.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64418.t1	Q570U6	57.1	112	48	0	1	112	1	112	3.8e-25	115.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64418.t1	I3TAT7	100.0	114	0	0	1	114	1	114	2.1e-40	174.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene64418	0.800577	1.35E-48	-1.69E-46
MS.gene051207	MS.gene64418	0.805691	1.18E-49	-1.69E-46
MS.gene054468	MS.gene64418	0.812589	3.93E-51	-1.69E-46
MS.gene054473	MS.gene64418	0.805471	1.31E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64418.t1	MTR_2g041310	100.000	114	0	0	1	114	1	114	4.36e-80	230
MS.gene64418.t1	MTR_4g125590	82.456	114	19	1	1	113	1	114	4.77e-64	190
MS.gene64418.t1	MTR_8g020200	70.175	114	34	0	1	114	1	114	6.06e-54	164
MS.gene64418.t1	MTR_3g070490	47.500	80	42	0	6	85	36	115	1.23e-22	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64418.t1	AT1G17455	70.536	112	33	0	1	112	1	112	2.00e-51	158
MS.gene64418.t1	AT1G17455	70.536	112	33	0	1	112	1	112	2.00e-51	158
MS.gene64418.t1	AT2G06255	68.696	115	29	3	1	114	1	109	2.36e-48	150
MS.gene64418.t1	AT1G72630	66.667	114	37	1	1	113	5	118	3.99e-48	150
MS.gene64418.t1	AT2G29950	51.351	74	36	0	16	89	34	107	1.60e-20	80.5
MS.gene64418.t1	AT2G40080	48.571	70	36	0	16	85	22	91	2.32e-20	79.7

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Find 17 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAACCCTCTTTCTATGT+AGG	0.557195	2.1:-49383333	None:intergenic
AAGGTGGACACAAAAGACAC+AGG	0.696481	2.1:+49383310	MS.gene64418:CDS
ACATTCTCTGGTATTGGAAA+TGG	0.427951	2.1:+49383009	MS.gene64418:CDS
ACATTTCTGCTGAGATTATC+AGG	0.272078	2.1:-49383153	None:intergenic
ACTTCAGAAGGAGATTCAAG+TGG	0.659737	2.1:+49383267	MS.gene64418:CDS
AGTGGTGCTGTGAAATCAGA+TGG	0.588608	2.1:+49383285	MS.gene64418:CDS
ATGGAGGATGATACATTCTC+TGG	0.503053	2.1:+49382997	MS.gene64418:CDS
CAAATTGATACTAAGATATT+AGG	0.308401	2.1:+49383036	MS.gene64418:CDS
CAACAACAATATTAGAAGAG+TGG	0.606391	2.1:+49383194	MS.gene64418:CDS
GATAATCTCAGCAGAAATGT+TGG	0.548630	2.1:+49383156	MS.gene64418:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CAACAACAATATTAGAAGAG+TGG	+	chr2.1:49383194-49383213	MS.gene64418:CDS	30.0%
	ACATTTCTGCTGAGATTATC+AGG	-	chr2.1:49383156-49383175	None:intergenic	35.0%
	GATAATCTCAGCAGAAATGT+TGG	+	chr2.1:49383156-49383175	MS.gene64418:CDS	35.0%
	GATGATACATTCTCTGGTAT+TGG	+	chr2.1:49383003-49383022	MS.gene64418:CDS	35.0%
	ACTTCAGAAGGAGATTCAAG+TGG	+	chr2.1:49383267-49383286	MS.gene64418:CDS	40.0%
	ATGGAGGATGATACATTCTC+TGG	+	chr2.1:49382997-49383016	MS.gene64418:CDS	40.0%
	GCTGTGAAATCAGATGGAAA+AGG	+	chr2.1:49383291-49383310	MS.gene64418:CDS	40.0%
	GTGAAATCAGATGGAAAAGG+TGG	+	chr2.1:49383294-49383313	MS.gene64418:CDS	40.0%
	AAGGTGGACACAAAAGACAC+AGG	+	chr2.1:49383310-49383329	MS.gene64418:CDS	45.0%
!	ACATTCTCTGGTATTGGAAA+TGG	+	chr2.1:49383009-49383028	MS.gene64418:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	49382997	49383341	49382997	ID=MS.gene64418
chr2.1	mRNA	49382997	49383341	49382997	ID=MS.gene64418.t1;Parent=MS.gene64418
chr2.1	exon	49382997	49383341	49382997	ID=MS.gene64418.t1.exon1;Parent=MS.gene64418.t1
chr2.1	CDS	49382997	49383341	49382997	ID=cds.MS.gene64418.t1;Parent=MS.gene64418.t1

Gene Sequence	>MS.gene64418 ATGGAGGATGATACATTCTCTGGTATTGGAAATGGTACACAAATTGATACTAAGATATTAGGAACTTTTCAGAAGAGCTTTGTACAAGTGCAGAACATTTTGGATCAGAACAGGTTACTAATCAATGAGATAAACCAAAATCATGAATCCAAAATTCCTGATAATCTCAGCAGAAATGTTGGTCTAATTAAAGAACTCAACAACAATATTAGAAGAGTGGTTGATTTATATGCTGATCTTTCAAGTTCTTTTACTAAATCCATGGATGTTACTTCAGAAGGAGATTCAAGTGGTGCTGTGAAATCAGATGGAAAAGGTGGACACAAAAGACACAGGCCTACATAG
Protein sequence	>MS.gene64418.t1 MEDDTFSGIGNGTQIDTKILGTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNVGLIKELNNNIRRVVDLYADLSSSFTKSMDVTSEGDSSGAVKSDGKGGHKRHRPT