AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64560.t1 MTR_7g060320 93.191 470 29 2 1 470 2 468 0.0 862
MS.gene64560.t1 MTR_7g060310 74.802 504 77 5 1 469 2 490 0.0 739
MS.gene64560.t1 MTR_7g060115 75.906 469 94 5 1 469 1 450 0.0 698
MS.gene64560.t1 MTR_7g446270 72.822 482 109 5 1 462 1 480 0.0 652
MS.gene64560.t1 MTR_7g060260 73.718 468 82 3 1 468 2 428 0.0 650
MS.gene64560.t1 MTR_7g060840 69.133 473 104 4 1 469 1 435 0.0 634
MS.gene64560.t1 MTR_7g059540 68.454 485 132 7 1 470 1 479 0.0 630
MS.gene64560.t1 MTR_7g059810 72.281 469 107 6 1 469 2 447 0.0 626
MS.gene64560.t1 MTR_7g059540 69.053 475 136 7 1 470 2 470 0.0 622
MS.gene64560.t1 MTR_7g060020 65.612 474 114 7 1 469 1 430 0.0 596
MS.gene64560.t1 MTR_0182s0060 59.851 538 127 6 1 469 2 519 0.0 596
MS.gene64560.t1 MTR_7g060370 66.180 479 146 6 1 469 1 473 0.0 580
MS.gene64560.t1 MTR_7g060160 65.245 469 96 5 1 469 1 402 0.0 578
MS.gene64560.t1 MTR_7g060220 67.447 470 120 9 1 469 2 439 0.0 569
MS.gene64560.t1 MTR_7g059510 60.950 484 110 8 1 469 1 420 0.0 543
MS.gene64560.t1 MTR_7g060330 61.386 505 141 10 1 468 2 489 0.0 535
MS.gene64560.t1 MTR_7g059525 66.667 282 70 5 204 469 13 286 2.87e-122 358
MS.gene64560.t1 MTR_7g059480 64.982 277 66 3 224 469 500 776 3.16e-112 348
MS.gene64560.t1 MTR_7g059480 76.923 195 44 1 1 194 1 195 7.85e-96 306
MS.gene64560.t1 MTR_7g059515 84.865 185 25 1 1 185 1 182 4.08e-107 317
MS.gene64560.t1 MTR_8g037923 39.754 488 226 12 15 468 19 472 1.55e-105 322
MS.gene64560.t1 MTR_8g042170 39.407 472 222 11 25 468 24 459 7.92e-101 310
MS.gene64560.t1 MTR_7g059475 61.569 255 74 4 71 313 2 244 4.96e-96 290
MS.gene64560.t1 MTR_7g060060 68.807 218 58 3 49 259 1 215 8.03e-94 283
MS.gene64560.t1 MTR_7g059520 73.626 182 40 1 287 468 1 174 1.17e-92 278
MS.gene64560.t1 MTR_7g060080 70.370 189 56 0 282 470 7 195 9.57e-92 277
MS.gene64560.t1 MTR_8g037920 38.739 444 210 13 48 468 7 411 7.91e-86 270
MS.gene64560.t1 MTR_8g042400 39.894 376 180 7 108 468 2 346 1.48e-81 256
MS.gene64560.t1 MTR_8g042070 41.406 256 125 4 239 469 11 266 3.68e-51 174
MS.gene64560.t1 MTR_7g060200 57.143 189 50 5 71 258 2 160 1.53e-49 168
MS.gene64560.t1 MTR_7g060200 73.333 45 10 1 425 469 156 198 1.87e-14 72.4
MS.gene64560.t1 MTR_1g048070 50.244 205 73 7 2 202 3 182 2.17e-49 169
MS.gene64560.t1 MTR_5g016570 28.601 479 292 15 5 466 81 526 5.22e-38 145
MS.gene64560.t1 MTR_5g086340 30.180 444 235 13 41 466 46 432 8.79e-37 141
MS.gene64560.t1 MTR_8g042080 45.223 157 69 4 23 171 22 169 9.01e-34 125
MS.gene64560.t1 MTR_5g086260 40.678 177 100 2 291 466 136 308 7.57e-32 124
MS.gene64560.t1 MTR_8g005325 25.597 461 276 12 27 467 58 471 1.85e-26 112
MS.gene64560.t1 MTR_8g042830 27.623 467 239 20 12 466 34 413 1.85e-26 111
MS.gene64560.t1 MTR_8g005235 23.947 451 277 12 27 458 29 432 3.96e-25 107
MS.gene64560.t1 MTR_5g087580 37.853 177 104 3 291 466 43 214 3.02e-24 100
MS.gene64560.t1 MTR_3g079390 24.396 455 282 14 23 462 38 445 4.04e-24 105
MS.gene64560.t1 MTR_0209s0060 26.316 399 228 13 44 423 46 397 1.47e-23 103
MS.gene64560.t1 MTR_0209s0030 26.316 399 228 13 44 423 46 397 1.47e-23 103
MS.gene64560.t1 MTR_2g036320 25.216 464 277 16 12 462 54 460 2.03e-23 103
MS.gene64560.t1 MTR_8g042090 46.729 107 44 1 335 428 2 108 8.02e-23 93.6
MS.gene64560.t1 MTR_8g006525 25.647 425 228 12 27 423 30 394 8.02e-21 95.1
MS.gene64560.t1 MTR_2g041180 24.886 438 254 17 42 462 65 444 1.43e-20 94.7
MS.gene64560.t1 MTR_8g005265 23.947 451 274 13 41 462 41 451 5.51e-20 92.8
MS.gene64560.t1 MTR_8g005295 23.062 503 285 14 27 461 38 506 7.56e-20 92.4
MS.gene64560.t1 MTR_8g005285 23.285 481 279 13 37 461 46 492 1.14e-19 92.0
MS.gene64560.t1 MTR_7g060105 78.431 51 11 0 365 415 1 51 1.02e-18 84.0
MS.gene64560.t1 MTR_8g005225 22.996 474 301 17 6 456 18 450 5.06e-18 86.7
MS.gene64560.t1 MTR_6g010890 22.921 445 258 12 41 462 39 421 4.79e-17 83.6
MS.gene64560.t1 MTR_2g036310 31.875 160 100 7 313 466 2 158 7.83e-17 78.2
MS.gene64560.t1 MTR_6g009170 24.146 439 263 13 41 466 39 420 8.09e-17 82.8
MS.gene64560.t1 MTR_6g010920 24.828 435 253 15 37 462 35 404 9.22e-17 82.4
MS.gene64560.t1 MTR_6g011050 25.917 436 248 16 37 462 34 404 7.12e-16 79.7
MS.gene64560.t1 MTR_4g009590 26.540 211 144 4 260 466 347 550 5.05e-13 71.6
MS.gene64560.t1 MTR_7g017620 28.218 202 132 5 267 463 344 537 5.82e-13 71.2
MS.gene64560.t1 MTR_4g009620 29.016 193 124 5 279 466 364 548 1.42e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64560.t1 AT3G50120 29.485 485 275 18 5 466 83 523 5.77e-44 162
MS.gene64560.t1 AT3G50180 27.984 486 261 15 5 465 158 579 2.34e-39 150
MS.gene64560.t1 AT3G50170 27.984 486 279 15 5 466 93 531 9.10e-39 148
MS.gene64560.t1 AT3G50140 28.151 476 293 15 6 468 94 533 4.25e-36 140
MS.gene64560.t1 AT3G50130 29.132 484 279 21 5 468 119 558 1.96e-35 139
MS.gene64560.t1 AT3G50160 27.394 449 256 11 27 466 106 493 4.52e-35 137
MS.gene64560.t1 AT3G50150 26.695 472 296 13 5 466 70 501 9.04e-34 133
MS.gene64560.t1 AT5G22540 26.292 445 246 14 42 465 46 429 1.23e-28 117
MS.gene64560.t1 AT4G31980 26.941 438 235 13 44 466 310 677 9.43e-28 117
MS.gene64560.t1 AT5G11290 25.814 430 244 11 44 462 50 415 3.56e-26 110
MS.gene64560.t1 AT3G50190 25.263 475 275 15 6 466 77 485 5.28e-26 110
MS.gene64560.t1 AT3G47250 25.114 438 274 14 42 466 76 472 1.53e-25 109
MS.gene64560.t1 AT3G47250 25.114 438 274 14 42 466 76 472 1.53e-25 109
MS.gene64560.t1 AT3G47250 25.114 438 274 14 42 466 76 472 1.53e-25 109
MS.gene64560.t1 AT3G44710 24.353 464 288 14 38 465 59 495 2.53e-25 108
MS.gene64560.t1 AT3G47200 25.282 443 265 16 42 466 61 455 1.44e-24 106
MS.gene64560.t1 AT3G47200 25.282 443 265 16 42 466 61 455 1.44e-24 106
MS.gene64560.t1 AT5G22550 24.694 490 284 19 17 465 36 481 3.99e-24 105
MS.gene64560.t1 AT2G36430 25.115 434 261 14 44 466 62 442 2.28e-23 102
MS.gene64560.t1 AT3G60470 24.805 512 294 18 27 462 34 530 2.11e-19 91.3
MS.gene64560.t1 AT2G44930 25.105 474 257 17 27 466 86 495 4.89e-19 90.1
MS.gene64560.t1 AT5G11290 24.694 409 233 11 65 462 2 346 1.07e-18 87.8
MS.gene64560.t1 AT2G28580 25.050 503 276 20 1 462 1 443 2.71e-18 87.8
MS.gene64560.t1 AT2G28580 23.711 485 296 15 1 466 83 512 3.78e-18 87.4
MS.gene64560.t1 AT2G28580 23.711 485 296 15 1 466 69 498 3.90e-18 87.4
MS.gene64560.t1 AT2G28580 24.852 507 280 20 1 466 69 515 4.44e-18 87.4
MS.gene64560.t1 AT2G28580 24.852 507 280 20 1 466 83 529 4.60e-18 87.4
MS.gene64560.t1 AT5G22550 24.923 325 202 10 162 465 129 432 2.41e-16 81.6
MS.gene64560.t1 AT3G47210 22.195 401 246 12 44 431 110 457 2.19e-15 78.6
MS.gene64560.t1 AT1G67150 30.808 198 126 4 266 462 168 355 6.71e-15 76.6
MS.gene64560.t1 AT1G67150 30.808 198 126 4 266 462 211 398 7.86e-15 76.6
MS.gene64560.t1 AT1G67150 30.808 198 126 4 266 462 211 398 7.86e-15 76.6
MS.gene64560.t1 AT1G67150 31.088 193 122 4 271 462 220 402 1.06e-14 76.3
MS.gene64560.t1 AT1G65985 24.945 453 267 20 25 444 14 426 6.55e-14 73.9
MS.gene64560.t1 AT1G65985 24.945 453 267 20 25 444 14 426 6.55e-14 73.9
MS.gene64560.t1 AT3G02645 27.607 163 112 4 285 445 340 498 1.46e-11 67.0

Find 95 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTCGGTCGTGAATTT+TGG 0.156740 7.3:+44638581 None:intergenic
TCTCCTTCTCCCTTTCCTTT+TGG 0.204710 7.3:+44637995 None:intergenic
GATGAACTGAAGGGTCATTT+TGG 0.252217 7.3:-44638358 MS.gene64560:CDS
CATCATTGGGCCACACTAGA+TGG 0.266553 7.3:-44638049 MS.gene64560:CDS
CTCAATTCCTTCACATCTTC+AGG 0.273996 7.3:+44637123 None:intergenic
ACCATGTCCTTCTCCTTATC+TGG 0.307778 7.3:+44638019 None:intergenic
CGCAGCAAGGAATGCAATAA+TGG 0.328608 7.3:+44636906 None:intergenic
TCGTAGTCGTTCTCAAAATC+TGG 0.330637 7.3:+44637189 None:intergenic
ATGTCAAGATGATGACTTAC+AGG 0.334957 7.3:-44637386 MS.gene64560:CDS
GGCAAGTCTCTTGAAGGCTT+TGG 0.346444 7.3:-44638313 MS.gene64560:CDS
GTGAAGGAATTGAGATCAAA+AGG 0.357359 7.3:-44637114 MS.gene64560:CDS
GACACATCTCATACGCTATC+AGG 0.376818 7.3:+44637211 None:intergenic
ACCAGGGCAGATGAATATTA+AGG 0.391712 7.3:-44638206 MS.gene64560:CDS
TCTTGCACCCTTTGTATCTT+CGG 0.392365 7.3:+44638568 None:intergenic
GAATATTAAGGTTGATCAAC+TGG 0.394486 7.3:-44638194 MS.gene64560:CDS
AGTTCCTCGACTGTCATCAT+TGG 0.406295 7.3:-44638063 MS.gene64560:CDS
CACTTACTTCAGTAATCCTT+GGG 0.409121 7.3:-44636929 MS.gene64560:CDS
CTGCCCTGGTTCATCAAGCT+TGG 0.428492 7.3:+44638219 None:intergenic
ACACTTACTTCAGTAATCCT+TGG 0.432942 7.3:-44636930 MS.gene64560:CDS
TTAACTGGCAAGTCTCTTGA+AGG 0.438518 7.3:-44638319 MS.gene64560:CDS
TAGGAGAGAAGTACAAGCTT+AGG 0.447232 7.3:-44638453 MS.gene64560:CDS
AGGACCTATCGACACTAACT+TGG 0.449064 7.3:+44638504 None:intergenic
TCTCATACGCTATCAGGTTA+AGG 0.449897 7.3:+44637217 None:intergenic
GACAACACAAATCTGAAGTT+AGG 0.450449 7.3:-44638472 MS.gene64560:CDS
CAATATCATAAGTACTGACT+TGG 0.453322 7.3:-44637043 MS.gene64560:CDS
GTCTCTGACTGTGACTCATT+TGG 0.454138 7.3:+44637950 None:intergenic
GTGTCGTCCACAACGATCTC+AGG 0.471457 7.3:+44637255 None:intergenic
CTCTAACTTTCATTCAAACA+TGG 0.476905 7.3:-44636870 MS.gene64560:CDS
TCAACTGGTTCTTGTGATGA+TGG 0.477187 7.3:-44638179 MS.gene64560:CDS
TCGTGGATGTTGTTCGTGGA+TGG 0.483877 7.3:-44638271 MS.gene64560:CDS
TCAGATTTGTGTTGTCATGA+TGG 0.486562 7.3:+44638479 None:intergenic
ATGCAAGACTTGGATAGCAC+TGG 0.494292 7.3:-44636959 MS.gene64560:CDS
GACTGTGACTCATTTGGTAA+TGG 0.495269 7.3:+44637956 None:intergenic
GTTCCTCGACTGTCATCATT+GGG 0.498219 7.3:-44638062 MS.gene64560:CDS
AACATGGTTTGCGGTTGACC+CGG 0.504426 7.3:-44636854 MS.gene64560:CDS
AATAGCTTGAGTACTTCATA+AGG 0.505382 7.3:+44638130 None:intergenic
TTTCATTCAAACATGGTTTG+CGG 0.509065 7.3:-44636863 MS.gene64560:CDS
GAGAGAAGTACAAGCTTAGG+TGG 0.514812 7.3:-44638450 MS.gene64560:CDS
ATGAAGTACTCAAGCTATTG+TGG 0.515875 7.3:-44638126 MS.gene64560:CDS
ACCTTAATATTCATCTGCCC+TGG 0.515931 7.3:+44638205 None:intergenic
AAAGCCAAGCTTGATGAACC+AGG 0.516001 7.3:-44638223 MS.gene64560:CDS
TGAAGGAATTGAGATCAAAA+GGG 0.519868 7.3:-44637113 MS.gene64560:CDS
GAGAAGGACATGGTTCCAAA+AGG 0.526181 7.3:-44638010 MS.gene64560:CDS
ACAGACATAGATTTCTCTGC+AGG 0.532054 7.3:-44637303 MS.gene64560:CDS
AGATGGGTCACAGCCAGATA+AGG 0.532395 7.3:-44638032 MS.gene64560:CDS
ACCACCTTTACTAGCAAGCC+GGG 0.534299 7.3:+44636836 None:intergenic
ATACAAGATCTAAGAGCAGT+AGG 0.542239 7.3:-44637360 MS.gene64560:CDS
ATGAAGCTAACAACAAGAAA+CGG 0.547253 7.3:-44637455 MS.gene64560:CDS
ATCATTGGGCCACACTAGAT+GGG 0.548072 7.3:-44638048 MS.gene64560:CDS
AACCACCTTTACTAGCAAGC+CGG 0.550102 7.3:+44636835 None:intergenic
TGGAAAGATGAAGACGAGAG+TGG 0.550716 7.3:-44638106 MS.gene64560:CDS
TTTGAATGAAAGTTAGAGCA+AGG 0.557677 7.3:+44636875 None:intergenic
ACTTATGATATTGAAAAGAT+CGG 0.563500 7.3:+44637053 None:intergenic
TAGATCCTCTGGAATGTGTC+CGG 0.564886 7.3:+44638405 None:intergenic
GACTTAAGTCAAGCGCGACA+CGG 0.565085 7.3:-44637332 MS.gene64560:CDS
CAACGTCCTCATCACTCCCA+AGG 0.569161 7.3:+44637076 None:intergenic
GCAGAGAAATCTATGTCTGT+TGG 0.574571 7.3:+44637306 None:intergenic
TTCACGACCGAAGATACAAA+GGG 0.574977 7.3:-44638575 MS.gene64560:CDS
AGATAACATTGATGAACTGA+AGG 0.576877 7.3:-44638368 MS.gene64560:CDS
GACATGGTTCCAAAAGGAAA+GGG 0.580569 7.3:-44638004 MS.gene64560:CDS
GGACATGGTTCCAAAAGGAA+AGG 0.581017 7.3:-44638005 MS.gene64560:CDS
CCTCGCTACATCTAATTCCA+AGG 0.584536 7.3:-44637891 MS.gene64560:intron
TGCAAGACTTGGATAGCACT+GGG 0.590251 7.3:-44636958 MS.gene64560:CDS
GCCTCGAAGAAAAGCTGTCG+TGG 0.592322 7.3:-44638288 MS.gene64560:CDS
ATTCACGACCGAAGATACAA+AGG 0.594865 7.3:-44638576 MS.gene64560:CDS
GAAGTACAAGCTTAGGTGGG+CGG 0.600712 7.3:-44638446 MS.gene64560:CDS
TTTGTGTTGTCATGATGGAT+AGG 0.600865 7.3:+44638484 None:intergenic
TGACCGTCCTGAAGATGTGA+AGG 0.603479 7.3:-44637130 MS.gene64560:CDS
AACGTCCTCATCACTCCCAA+GGG 0.606261 7.3:+44637077 None:intergenic
GACTCTTCCTGAGATCGTTG+TGG 0.609718 7.3:-44637262 MS.gene64560:CDS
ACATAGATTTCTCTGCAGGA+TGG 0.615322 7.3:-44637299 MS.gene64560:CDS
GGACCTATCGACACTAACTT+GGG 0.618156 7.3:+44638505 None:intergenic
ACTGTAATAAATGCAAGACT+TGG 0.618169 7.3:-44636969 MS.gene64560:CDS
GCTGTCGTGGATGTTGTTCG+TGG 0.618355 7.3:-44638275 MS.gene64560:CDS
ACGGAGTCAGAAGAATTCAG+AGG 0.620784 7.3:-44637436 MS.gene64560:CDS
CAATTCCCTTGGGAGTGATG+AGG 0.622172 7.3:-44637082 MS.gene64560:CDS
GTTCCAAAAGGAAAGGGAGA+AGG 0.623553 7.3:-44637998 MS.gene64560:CDS
CAAGGGCGATAAACGCAGCA+AGG 0.625016 7.3:+44636893 None:intergenic
TTGAATGAAAGTTAGAGCAA+GGG 0.631837 7.3:+44636876 None:intergenic
TGGCTGTGACCCATCTAGTG+TGG 0.636757 7.3:+44638039 None:intergenic
TGAAGATCAAGAAGATGAGT+CGG 0.636773 7.3:+44637926 None:intergenic
GATAACATTGATGAACTGAA+GGG 0.648035 7.3:-44638367 MS.gene64560:CDS
AGGAATGCAATAATGGCCCA+AGG 0.648170 7.3:+44636913 None:intergenic
AGAGAAGTACAAGCTTAGGT+GGG 0.649064 7.3:-44638449 MS.gene64560:CDS
AAATGACAAGAAGAATGCAA+AGG 0.650463 7.3:-44637412 MS.gene64560:CDS
ATTCCTTCACATCTTCAGGA+CGG 0.651604 7.3:+44637127 None:intergenic
CCTTGGAATTAGATGTAGCG+AGG 0.656102 7.3:+44637891 None:intergenic
GTCACAGCCAGATAAGGAGA+AGG 0.660235 7.3:-44638026 MS.gene64560:CDS
GCGAAATATATAGAAAACAC+CGG 0.660684 7.3:-44638424 MS.gene64560:CDS
TCACCCAAGTTAGTGTCGAT+AGG 0.661712 7.3:-44638508 MS.gene64560:CDS
AAGCCAAGCTTGATGAACCA+GGG 0.666740 7.3:-44638222 MS.gene64560:CDS
GCCAGATAAGGAGAAGGACA+TGG 0.678771 7.3:-44638020 MS.gene64560:CDS
TGGCCCAATGATGACAGTCG+AGG 0.698119 7.3:+44638059 None:intergenic
TTAAGTCAAGCGCGACACGG+AGG 0.726221 7.3:-44637329 MS.gene64560:CDS
AAACACCGGACACATTCCAG+AGG 0.748698 7.3:-44638410 MS.gene64560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTCTTTAATAGTTT+GGG + chr7.3:44636856-44636875 None:intergenic 10.0%
!!! TCAAAATATATTTTTGTATT+AGG + chr7.3:44638471-44638490 None:intergenic 10.0%
!! AACTATTAAAGAAAAATTTG+TGG - chr7.3:44636857-44636876 MS.gene64560:CDS 15.0%
!!! CAAATTTTTCTTTAATAGTT+TGG + chr7.3:44636857-44636876 None:intergenic 15.0%
!! AAATATCAAAAGTCAAGAAA+AGG + chr7.3:44637860-44637879 None:intergenic 20.0%
!! AATATCAAAAGTCAAGAAAA+GGG + chr7.3:44637859-44637878 None:intergenic 20.0%
!! ACCATTATCATAATTACAAA+GGG - chr7.3:44637742-44637761 MS.gene64560:intron 20.0%
!! ACTTATGATATTGAAAAGAT+CGG + chr7.3:44638436-44638455 None:intergenic 20.0%
!! TACAAACAAACAAAACTATT+AGG - chr7.3:44637674-44637693 MS.gene64560:intron 20.0%
!! TACCATTATCATAATTACAA+AGG - chr7.3:44637741-44637760 MS.gene64560:intron 20.0%
!!! TGTTTTAATCAGAAATGAAT+TGG + chr7.3:44637998-44638017 None:intergenic 20.0%
!!! TTGACTTTTGATATTTTTGA+GGG - chr7.3:44637864-44637883 MS.gene64560:intron 20.0%
! CCATTATCATAATTACAAAG+GGG - chr7.3:44637743-44637762 MS.gene64560:intron 25.0%
! GTGTACATAATAGTAATTAG+AGG - chr7.3:44637784-44637803 MS.gene64560:intron 25.0%
!!! CTTGACTTTTGATATTTTTG+AGG - chr7.3:44637863-44637882 MS.gene64560:intron 25.0%
!!! TGACTTTTGATATTTTTGAG+GGG - chr7.3:44637865-44637884 MS.gene64560:intron 25.0%
!!! TTGTTATTTCTATTGTACCT+TGG + chr7.3:44637615-44637634 None:intergenic 25.0%
AAATGACAAGAAGAATGCAA+AGG - chr7.3:44638074-44638093 MS.gene64560:CDS 30.0%
AATAGCTTGAGTACTTCATA+AGG + chr7.3:44637359-44637378 None:intergenic 30.0%
ACTGTAATAAATGCAAGACT+TGG - chr7.3:44638517-44638536 MS.gene64560:CDS 30.0%
AGATAACATTGATGAACTGA+AGG - chr7.3:44637118-44637137 MS.gene64560:CDS 30.0%
ATGAAGCTAACAACAAGAAA+CGG - chr7.3:44638031-44638050 MS.gene64560:CDS 30.0%
CCCCTTTGTAATTATGATAA+TGG + chr7.3:44637746-44637765 None:intergenic 30.0%
CTCTAACTTTCATTCAAACA+TGG - chr7.3:44638616-44638635 MS.gene64560:CDS 30.0%
GATAACATTGATGAACTGAA+GGG - chr7.3:44637119-44637138 MS.gene64560:CDS 30.0%
GCGAAATATATAGAAAACAC+CGG - chr7.3:44637062-44637081 MS.gene64560:CDS 30.0%
TGAAGGAATTGAGATCAAAA+GGG - chr7.3:44638373-44638392 MS.gene64560:CDS 30.0%
TTATCATAATTACAAAGGGG+AGG - chr7.3:44637746-44637765 MS.gene64560:intron 30.0%
TTGAATGAAAGTTAGAGCAA+GGG + chr7.3:44638613-44638632 None:intergenic 30.0%
TTTCATTCAAACATGGTTTG+CGG - chr7.3:44638623-44638642 MS.gene64560:CDS 30.0%
TTTGAATGAAAGTTAGAGCA+AGG + chr7.3:44638614-44638633 None:intergenic 30.0%
! ATCTTTTTATGTAGATCCTC+TGG + chr7.3:44637095-44637114 None:intergenic 30.0%
! GAATATTAAGGTTGATCAAC+TGG - chr7.3:44637292-44637311 MS.gene64560:CDS 30.0%
!! CAATATCATAAGTACTGACT+TGG - chr7.3:44638443-44638462 MS.gene64560:CDS 30.0%
!! GACTTTTGATATTTTTGAGG+GGG - chr7.3:44637866-44637885 MS.gene64560:intron 30.0%
!!! GACGATGTTTTAACTTTAAC+TGG - chr7.3:44637152-44637171 MS.gene64560:CDS 30.0%
ACACTTACTTCAGTAATCCT+TGG - chr7.3:44638556-44638575 MS.gene64560:CDS 35.0%
ATACAAGATCTAAGAGCAGT+AGG - chr7.3:44638126-44638145 MS.gene64560:CDS 35.0%
ATGTCAAGATGATGACTTAC+AGG - chr7.3:44638100-44638119 MS.gene64560:CDS 35.0%
CACTTACTTCAGTAATCCTT+GGG - chr7.3:44638557-44638576 MS.gene64560:CDS 35.0%
GTGAAGGAATTGAGATCAAA+AGG - chr7.3:44638372-44638391 MS.gene64560:CDS 35.0%
TCAGATTTGTGTTGTCATGA+TGG + chr7.3:44637010-44637029 None:intergenic 35.0%
TGAAGATCAAGAAGATGAGT+CGG + chr7.3:44637563-44637582 None:intergenic 35.0%
! ATGAAGTACTCAAGCTATTG+TGG - chr7.3:44637360-44637379 MS.gene64560:CDS 35.0%
! GACAACACAAATCTGAAGTT+AGG - chr7.3:44637014-44637033 MS.gene64560:CDS 35.0%
! TATCTTCGGTCGTGAATTTT+GGG + chr7.3:44636907-44636926 None:intergenic 35.0%
! TTGTTCTTTTGCAGCTTTCA+TGG - chr7.3:44638323-44638342 MS.gene64560:CDS 35.0%
!! TTTGTGTTGTCATGATGGAT+AGG + chr7.3:44637005-44637024 None:intergenic 35.0%
ACAGACATAGATTTCTCTGC+AGG - chr7.3:44638183-44638202 MS.gene64560:CDS 40.0%
ACATAGATTTCTCTGCAGGA+TGG - chr7.3:44638187-44638206 MS.gene64560:CDS 40.0%
ACCAGGGCAGATGAATATTA+AGG - chr7.3:44637280-44637299 MS.gene64560:CDS 40.0%
ACCTTAATATTCATCTGCCC+TGG + chr7.3:44637284-44637303 None:intergenic 40.0%
ATTCACGACCGAAGATACAA+AGG - chr7.3:44636910-44636929 MS.gene64560:CDS 40.0%
ATTCCTTCACATCTTCAGGA+CGG + chr7.3:44638362-44638381 None:intergenic 40.0%
CTCAATTCCTTCACATCTTC+AGG + chr7.3:44638366-44638385 None:intergenic 40.0%
GACATGGTTCCAAAAGGAAA+GGG - chr7.3:44637482-44637501 MS.gene64560:intron 40.0%
GACTGTGACTCATTTGGTAA+TGG + chr7.3:44637533-44637552 None:intergenic 40.0%
GCAGAGAAATCTATGTCTGT+TGG + chr7.3:44638183-44638202 None:intergenic 40.0%
TCGTAGTCGTTCTCAAAATC+TGG + chr7.3:44638300-44638319 None:intergenic 40.0%
TCTCATACGCTATCAGGTTA+AGG + chr7.3:44638272-44638291 None:intergenic 40.0%
TCTTGCACCCTTTGTATCTT+CGG + chr7.3:44636921-44636940 None:intergenic 40.0%
TTAACTGGCAAGTCTCTTGA+AGG - chr7.3:44637167-44637186 MS.gene64560:CDS 40.0%
TTCACGACCGAAGATACAAA+GGG - chr7.3:44636911-44636930 MS.gene64560:CDS 40.0%
! AGAGAAGTACAAGCTTAGGT+GGG - chr7.3:44637037-44637056 MS.gene64560:CDS 40.0%
! GATGAACTGAAGGGTCATTT+TGG - chr7.3:44637128-44637147 MS.gene64560:CDS 40.0%
! GGATTTTGCTCAATTCCCTT+GGG - chr7.3:44638394-44638413 MS.gene64560:CDS 40.0%
! GTATCTTCGGTCGTGAATTT+TGG + chr7.3:44636908-44636927 None:intergenic 40.0%
! TAGGAGAGAAGTACAAGCTT+AGG - chr7.3:44637033-44637052 MS.gene64560:CDS 40.0%
! TCAACTGGTTCTTGTGATGA+TGG - chr7.3:44637307-44637326 MS.gene64560:CDS 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7.3:44637322-44637341 MS.gene64560:CDS 40.0%
AAAGCCAAGCTTGATGAACC+AGG - chr7.3:44637263-44637282 MS.gene64560:CDS 45.0%
AAGCCAAGCTTGATGAACCA+GGG - chr7.3:44637264-44637283 MS.gene64560:CDS 45.0%
ACCATGTCCTTCTCCTTATC+TGG + chr7.3:44637470-44637489 None:intergenic 45.0%
ACGGAGTCAGAAGAATTCAG+AGG - chr7.3:44638050-44638069 MS.gene64560:CDS 45.0%
AGGAATGCAATAATGGCCCA+AGG + chr7.3:44638576-44638595 None:intergenic 45.0%
AGGACCTATCGACACTAACT+TGG + chr7.3:44636985-44637004 None:intergenic 45.0%
AGTTCCTCGACTGTCATCAT+TGG - chr7.3:44637423-44637442 MS.gene64560:CDS 45.0%
ATCATTGGGCCACACTAGAT+GGG - chr7.3:44637438-44637457 MS.gene64560:CDS 45.0%
ATGCAAGACTTGGATAGCAC+TGG - chr7.3:44638527-44638546 MS.gene64560:CDS 45.0%
CCTCGCTACATCTAATTCCA+AGG - chr7.3:44637595-44637614 MS.gene64560:intron 45.0%
CCTTGGAATTAGATGTAGCG+AGG + chr7.3:44637598-44637617 None:intergenic 45.0%
CGCAGCAAGGAATGCAATAA+TGG + chr7.3:44638583-44638602 None:intergenic 45.0%
GACACATCTCATACGCTATC+AGG + chr7.3:44638278-44638297 None:intergenic 45.0%
GAGAAGGACATGGTTCCAAA+AGG - chr7.3:44637476-44637495 MS.gene64560:intron 45.0%
GGACATGGTTCCAAAAGGAA+AGG - chr7.3:44637481-44637500 MS.gene64560:intron 45.0%
GGACCTATCGACACTAACTT+GGG + chr7.3:44636984-44637003 None:intergenic 45.0%
GTCTCTGACTGTGACTCATT+TGG + chr7.3:44637539-44637558 None:intergenic 45.0%
GTTCCAAAAGGAAAGGGAGA+AGG - chr7.3:44637488-44637507 MS.gene64560:intron 45.0%
GTTCCTCGACTGTCATCATT+GGG - chr7.3:44637424-44637443 MS.gene64560:CDS 45.0%
TGCAAGACTTGGATAGCACT+GGG - chr7.3:44638528-44638547 MS.gene64560:CDS 45.0%
TGGAAAGATGAAGACGAGAG+TGG - chr7.3:44637380-44637399 MS.gene64560:CDS 45.0%
! GAGAGAAGTACAAGCTTAGG+TGG - chr7.3:44637036-44637055 MS.gene64560:CDS 45.0%
! GGGATTTTGCTCAATTCCCT+TGG - chr7.3:44638393-44638412 MS.gene64560:CDS 45.0%
! TCTCCTTCTCCCTTTCCTTT+TGG + chr7.3:44637494-44637513 None:intergenic 45.0%
!! TAGATCCTCTGGAATGTGTC+CGG + chr7.3:44637084-44637103 None:intergenic 45.0%
!! TCACCCAAGTTAGTGTCGAT+AGG - chr7.3:44636978-44636997 MS.gene64560:CDS 45.0%
AAACACCGGACACATTCCAG+AGG - chr7.3:44637076-44637095 MS.gene64560:CDS 50.0%
AACGTCCTCATCACTCCCAA+GGG + chr7.3:44638412-44638431 None:intergenic 50.0%
AAGGGGAGGACAGTAATCAG+AGG - chr7.3:44637760-44637779 MS.gene64560:intron 50.0%
AGATGGGTCACAGCCAGATA+AGG - chr7.3:44637454-44637473 MS.gene64560:CDS 50.0%
AGGGGAGGACAGTAATCAGA+GGG - chr7.3:44637761-44637780 MS.gene64560:intron 50.0%
CAATTCCCTTGGGAGTGATG+AGG - chr7.3:44638404-44638423 MS.gene64560:CDS 50.0%
CATCATTGGGCCACACTAGA+TGG - chr7.3:44637437-44637456 MS.gene64560:CDS 50.0%
GAAGTACAAGCTTAGGTGGG+CGG - chr7.3:44637040-44637059 MS.gene64560:CDS 50.0%
GACTCTTCCTGAGATCGTTG+TGG - chr7.3:44638224-44638243 MS.gene64560:CDS 50.0%
GACTTAAGTCAAGCGCGACA+CGG - chr7.3:44638154-44638173 MS.gene64560:CDS 50.0%
GCCAGATAAGGAGAAGGACA+TGG - chr7.3:44637466-44637485 MS.gene64560:CDS 50.0%
GGCAAGTCTCTTGAAGGCTT+TGG - chr7.3:44637173-44637192 MS.gene64560:CDS 50.0%
GTCACAGCCAGATAAGGAGA+AGG - chr7.3:44637460-44637479 MS.gene64560:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7.3:44637215-44637234 MS.gene64560:CDS 50.0%
TGACCGTCCTGAAGATGTGA+AGG - chr7.3:44638356-44638375 MS.gene64560:CDS 50.0%
! AACATGGTTTGCGGTTGACC+CGG - chr7.3:44638632-44638651 MS.gene64560:CDS 50.0%
! TCCACGACAGCTTTTCTTCG+AGG + chr7.3:44637202-44637221 None:intergenic 50.0%
CAACGTCCTCATCACTCCCA+AGG + chr7.3:44638413-44638432 None:intergenic 55.0%
CAAGGGCGATAAACGCAGCA+AGG + chr7.3:44638596-44638615 None:intergenic 55.0%
CTGCCCTGGTTCATCAAGCT+TGG + chr7.3:44637270-44637289 None:intergenic 55.0%
GCCTCGAAGAAAAGCTGTCG+TGG - chr7.3:44637198-44637217 MS.gene64560:CDS 55.0%
GCTGTCGTGGATGTTGTTCG+TGG - chr7.3:44637211-44637230 MS.gene64560:CDS 55.0%
GGGGAGGACAGTAATCAGAG+GGG - chr7.3:44637762-44637781 MS.gene64560:intron 55.0%
GTGTCGTCCACAACGATCTC+AGG + chr7.3:44638234-44638253 None:intergenic 55.0%
TGGCCCAATGATGACAGTCG+AGG + chr7.3:44637430-44637449 None:intergenic 55.0%
TGGCTGTGACCCATCTAGTG+TGG + chr7.3:44637450-44637469 None:intergenic 55.0%
TTAAGTCAAGCGCGACACGG+AGG - chr7.3:44638157-44638176 MS.gene64560:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 44636846 44638662 44636846 ID=MS.gene64560
chr7.3 mRNA 44636846 44638662 44636846 ID=MS.gene64560.t1;Parent=MS.gene64560
chr7.3 exon 44637892 44638662 44637892 ID=MS.gene64560.t1.exon1;Parent=MS.gene64560.t1
chr7.3 CDS 44637892 44638662 44637892 ID=cds.MS.gene64560.t1;Parent=MS.gene64560.t1
chr7.3 exon 44636846 44637487 44636846 ID=MS.gene64560.t1.exon2;Parent=MS.gene64560.t1
chr7.3 CDS 44636846 44637487 44636846 ID=cds.MS.gene64560.t1;Parent=MS.gene64560.t1
Gene Sequence

>MS.gene64560

ATGGCATCCCAAACTATTAAAGAAAAATTTGTGGAGTTACAAAAATCAAAGCAAACATCCCAAAATTCACGACCGAAGATACAAAGGGTGCAAGAGTATCTCAGAAATAGAAAAAACTTTGAGAAGCATTACTCACCCAAGTTAGTGTCGATAGGTCCTATCCATCATGACAACACAAATCTGAAGTTAGGAGAGAAGTACAAGCTTAGGTGGGCGGCGAAATATATAGAAAACACCGGACACATTCCAGAGGATCTACATAAAAAGATTGCAGATAACATTGATGAACTGAAGGGTCATTTTGGCGACGATGTTTTAACTTTAACTGGCAAGTCTCTTGAAGGCTTTGGAAGCCTCGAAGAAAAGCTGTCGTGGATGTTGTTCGTGGATGGATGTTCTTTGCTGCATATCTTAGAGAAAGCCAAGCTTGATGAACCAGGGCAGATGAATATTAAGGTTGATCAACTGGTTCTTGTGATGATGGATGTGCTTTTGTTGGAGAATCAACTTCCTTATGAAGTACTCAAGCTATTGTGGAAAGATGAAGACGAGAGTGGTTTGAAAAAAAGCATGACGAAGTTCCTCGACTGTCATCATTGGGCCACACTAGATGGGTCACAGCCAGATAAGGAGAAGGACATGGTTCCAAAAGGAAAGGGAGAAGGAGAACATAGTGTATCAATACCATTACCAAATGAGTCACAGTCAGAGACACCGACTCATCTTCTTGATCTTCAGCGCAAAATCATCCTCGCTACATCTAATTCCAAGGTACAATAGAAATAACAAAAAAAGAGTACTAGAAAAAATTGAAATAACAACAGAAATTACAAACAAACAAAACTATTAGGTTGCTAAGAAACAGAGTTTGTTTCATCAGTGTTTTATGTCTATCTACCATTATCATAATTACAAAGGGGAGGACAGTAATCAGAGGGGTGTACATAATAGTAATTAGAGGATTAAACTAAATAAAATAATTAATACTGCATAGAAAAGATAAAATAACACCCTTTTCTTGACTTTTGATATTTTTGAGGGGGAAATAACACTTTTTTTAAATATTTTTTCTCTGCTTAAATGTGATTATTATTACTGCACATAGAAAGTTAAGATTTGAATATTTTTTATTATCATGAGTAAAATGATCCAATTCATTTCTGATTAAAACATAGACTAAAAGCAATGAAGCTAACAACAAGAAACGGAGTCAGAAGAATTCAGAGGAAAATGACAAGAAGAATGCAAAGGAAAATGTCAAGATGATGACTTACAGGAGCATACAAGATCTAAGAGCAGTAGGAATAAGACTTAAGTCAAGCGCGACACGGAGGCCAACAGACATAGATTTCTCTGCAGGATGGTTCGCTGCGAAACTGACTCTTCCTGAGATCGTTGTGGACGACACTTCAGCTGCTACTTTCCTTAACCTGATAGCGTATGAGATGTGTCCAGATTTTGAGAACGACTACGAAATTTGTTCTTTTGCAGCTTTCATGGACTCACTCATTGACCGTCCTGAAGATGTGAAGGAATTGAGATCAAAAGGGATTTTGCTCAATTCCCTTGGGAGTGATGAGGACGTTGCCGATCTTTTCAATATCATAAGTACTGACTTGGTACCTAATACAAAAATATATTTTGAAGTCAGAGAAAAAATACATGAGCATTACTGTAATAAATGCAAGACTTGGATAGCACTGGGTTTTCACACTTACTTCAGTAATCCTTGGGCCATTATTGCATTCCTTGCTGCGTTTATCGCCCTTGCTCTAACTTTCATTCAAACATGGTTTGCGGTTGACCCGGCTTGCTAG
Protein sequence

>MS.gene64560.t1

MASQTIKEKFVELQKSKQTSQNSRPKIQRVQEYLRNRKNFEKHYSPKLVSIGPIHHDNTNLKLGEKYKLRWAAKYIENTGHIPEDLHKKIADNIDELKGHFGDDVLTLTGKSLEGFGSLEEKLSWMLFVDGCSLLHILEKAKLDEPGQMNIKVDQLVLVMMDVLLLENQLPYEVLKLLWKDEDESGLKKSMTKFLDCHHWATLDGSQPDKEKDMVPKGKGEGEHSVSIPLPNESQSETPTHLLDLQRKIILATSNSKTKSNEANNKKRSQKNSEENDKKNAKENVKMMTYRSIQDLRAVGIRLKSSATRRPTDIDFSAGWFAAKLTLPEIVVDDTSAATFLNLIAYEMCPDFENDYEICSFAAFMDSLIDRPEDVKELRSKGILLNSLGSDEDVADLFNIISTDLVPNTKIYFEVREKIHEHYCNKCKTWIALGFHTYFSNPWAIIAFLAAFIALALTFIQTWFAVDPAC