AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64676

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64676.t1 MTR_5g020620 98.039 561 11 0 1 561 1 561 0.0 1148
MS.gene64676.t1 MTR_5g020600 84.192 563 86 3 1 561 5 566 0.0 996
MS.gene64676.t1 MTR_3g462760 64.126 538 192 1 24 561 20 556 0.0 743
MS.gene64676.t1 MTR_5g069680 61.111 558 217 0 4 561 1 558 0.0 739
MS.gene64676.t1 MTR_4g015120 60.465 559 214 4 6 561 3 557 0.0 702
MS.gene64676.t1 MTR_5g081810 58.444 527 218 1 35 561 4 529 0.0 677
MS.gene64676.t1 MTR_7g062310 58.258 551 213 6 27 561 44 593 0.0 663
MS.gene64676.t1 MTR_7g058690 55.363 578 235 9 6 561 4 580 0.0 650
MS.gene64676.t1 MTR_7g458880 54.895 572 235 8 7 561 15 580 0.0 647
MS.gene64676.t1 MTR_7g060460 55.440 579 234 9 6 561 4 581 0.0 647
MS.gene64676.t1 MTR_7g062250 53.287 578 250 8 3 561 2 578 0.0 627
MS.gene64676.t1 MTR_4g064530 53.203 562 245 9 2 547 14 573 0.0 608
MS.gene64676.t1 MTR_5g073210 53.819 563 245 7 9 561 3 560 0.0 607
MS.gene64676.t1 MTR_5g083360 50.796 565 258 5 13 561 7 567 0.0 607
MS.gene64676.t1 MTR_2g008330 49.735 565 272 6 9 561 15 579 0.0 575
MS.gene64676.t1 MTR_4g064530 53.073 537 234 9 2 522 14 548 0.0 572
MS.gene64676.t1 MTR_4g019225 46.812 549 275 4 29 561 25 572 0.0 539
MS.gene64676.t1 MTR_3g071890 49.719 533 245 8 1 517 1 526 0.0 535
MS.gene64676.t1 MTR_3g101640 48.135 563 275 11 13 561 12 571 0.0 521
MS.gene64676.t1 MTR_3g101635 48.188 552 267 9 6 544 4 549 1.35e-180 521
MS.gene64676.t1 MTR_8g027375 44.872 546 283 6 28 561 32 571 5.17e-174 504
MS.gene64676.t1 MTR_7g065980 44.887 577 289 12 8 561 1 571 8.43e-174 504
MS.gene64676.t1 MTR_7g065970 46.585 571 287 6 8 561 1 570 2.94e-172 500
MS.gene64676.t1 MTR_5g081790 51.880 266 126 1 254 519 157 420 3.76e-92 289
MS.gene64676.t1 MTR_5g081790 52.273 176 69 2 4 172 6 173 1.56e-58 201
MS.gene64676.t1 MTR_8g073840 73.333 210 17 3 1 209 1 172 3.49e-90 280
MS.gene64676.t1 MTR_8g091390 32.418 546 314 14 25 539 29 550 2.54e-80 263
MS.gene64676.t1 MTR_3g078700 31.319 546 334 14 6 539 2 518 3.12e-65 222
MS.gene64676.t1 MTR_3g078730 31.550 542 324 17 13 539 8 517 8.08e-65 221
MS.gene64676.t1 MTR_3g078740 31.228 570 310 20 27 539 23 567 1.50e-62 216
MS.gene64676.t1 MTR_3g115050 30.526 570 346 18 1 561 5 533 1.49e-60 209
MS.gene64676.t1 MTR_4g075690 29.371 572 353 15 1 561 1 532 1.33e-58 204
MS.gene64676.t1 MTR_3g008580 29.463 577 362 18 4 561 1 551 1.74e-58 205
MS.gene64676.t1 MTR_1g026410 29.004 562 351 16 10 561 9 532 4.97e-57 200
MS.gene64676.t1 MTR_4g101650 29.828 580 357 20 1 561 1 549 9.56e-56 197
MS.gene64676.t1 MTR_1g090707 28.597 563 352 18 14 561 9 536 8.85e-54 192
MS.gene64676.t1 MTR_4g049390 30.474 548 335 19 23 561 20 530 1.32e-53 191
MS.gene64676.t1 MTR_2g088080 31.022 548 332 18 23 561 23 533 7.40e-51 183
MS.gene64676.t1 MTR_4g048350 31.496 508 301 20 23 521 20 489 8.93e-51 183
MS.gene64676.t1 MTR_4g075690 29.835 486 291 14 1 475 1 447 6.98e-50 178
MS.gene64676.t1 MTR_8g479390 29.825 513 299 20 25 521 26 493 1.34e-48 177
MS.gene64676.t1 MTR_7g051440 28.824 510 322 16 32 526 31 514 4.81e-48 176
MS.gene64676.t1 MTR_5g018270 28.794 514 308 18 25 525 26 494 2.06e-46 171
MS.gene64676.t1 MTR_4g083210 27.857 560 349 19 10 553 5 525 5.11e-46 170
MS.gene64676.t1 MTR_8g479380 28.037 535 315 19 17 527 9 497 5.77e-46 170
MS.gene64676.t1 MTR_4g132320 30.841 535 315 18 1 521 1 494 7.66e-44 164
MS.gene64676.t1 MTR_3g083440 27.486 553 343 20 9 543 5 517 1.22e-43 163
MS.gene64676.t1 MTR_3g083430 27.486 553 343 20 9 543 5 517 1.39e-43 163
MS.gene64676.t1 MTR_3g083400 27.605 547 350 18 9 543 5 517 1.53e-43 163
MS.gene64676.t1 MTR_3g083390 27.110 557 340 20 9 543 5 517 6.22e-43 161
MS.gene64676.t1 MTR_3g083450 27.736 530 326 19 32 543 28 518 8.91e-43 161
MS.gene64676.t1 MTR_2g088080 31.493 489 289 18 82 561 1 452 1.27e-41 156
MS.gene64676.t1 MTR_3g083410 27.723 505 320 17 51 543 10 481 1.98e-40 154
MS.gene64676.t1 MTR_4g083190 28.090 534 327 21 13 527 8 503 1.04e-38 149
MS.gene64676.t1 MTR_7g058670 58.025 81 33 1 87 166 13 93 2.68e-30 114
MS.gene64676.t1 MTR_4g133150 28.796 191 114 6 132 312 19 197 1.28e-13 70.5
MS.gene64676.t1 MTR_3g079660 50.000 60 30 0 471 530 5 64 1.10e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64676.t1 AT5G03260 76.311 553 126 1 14 561 5 557 0.0 887
MS.gene64676.t1 AT2G38080 61.071 560 214 3 4 561 1 558 0.0 729
MS.gene64676.t1 AT5G58910 58.393 560 226 4 8 561 9 567 0.0 699
MS.gene64676.t1 AT5G58910 58.393 560 225 5 8 561 9 566 0.0 694
MS.gene64676.t1 AT5G58910 59.811 530 200 4 38 561 1 523 0.0 668
MS.gene64676.t1 AT5G01190 58.514 552 225 3 13 561 8 558 0.0 668
MS.gene64676.t1 AT5G60020 55.363 578 230 8 10 561 2 577 0.0 652
MS.gene64676.t1 AT5G01190 57.609 552 216 4 13 561 8 544 0.0 645
MS.gene64676.t1 AT5G60020 57.038 547 210 7 38 561 1 545 0.0 642
MS.gene64676.t1 AT2G29130 53.765 571 243 9 10 561 5 573 0.0 633
MS.gene64676.t1 AT5G05390 52.406 561 250 7 14 561 9 565 0.0 607
MS.gene64676.t1 AT1G18140 52.057 559 247 7 24 561 23 581 0.0 605
MS.gene64676.t1 AT2G30210 51.394 574 253 7 3 561 8 570 0.0 600
MS.gene64676.t1 AT5G60020 54.664 536 215 8 10 519 2 535 0.0 589
MS.gene64676.t1 AT2G40370 48.376 585 273 7 1 561 1 580 0.0 576
MS.gene64676.t1 AT5G09360 49.910 557 264 8 14 561 19 569 0.0 569
MS.gene64676.t1 AT5G07130 50.441 567 259 8 13 561 7 569 0.0 564
MS.gene64676.t1 AT3G09220 47.310 539 274 6 16 544 12 550 0.0 522
MS.gene64676.t1 AT5G01040 44.870 575 294 8 1 561 1 566 1.43e-176 511
MS.gene64676.t1 AT2G46570 45.310 565 288 10 11 561 12 569 1.06e-175 508
MS.gene64676.t1 AT5G01050 43.924 576 300 8 1 561 1 568 1.65e-173 503
MS.gene64676.t1 AT5G07130 51.745 487 213 8 93 561 2 484 4.12e-170 491
MS.gene64676.t1 AT5G07130 51.745 487 213 8 93 561 2 484 4.12e-170 491
MS.gene64676.t1 AT5G48100 44.704 557 285 13 8 547 1 551 2.60e-160 469
MS.gene64676.t1 AT3G09220 48.451 452 223 6 103 544 2 453 1.73e-150 441
MS.gene64676.t1 AT2G46570 44.877 488 249 9 87 561 4 484 1.28e-149 439
MS.gene64676.t1 AT4G39830 31.500 600 326 22 11 561 14 577 2.70e-82 268
MS.gene64676.t1 AT5G21105 32.918 562 318 19 13 539 21 558 6.17e-77 254
MS.gene64676.t1 AT5G21100 31.261 563 328 18 24 553 18 554 4.28e-71 238
MS.gene64676.t1 AT5G21105 32.288 542 308 19 13 519 21 538 6.26e-68 229
MS.gene64676.t1 AT4G39830 31.311 511 270 20 96 561 6 480 7.72e-60 206
MS.gene64676.t1 AT4G39830 31.311 511 270 20 96 561 8 482 9.23e-60 206
MS.gene64676.t1 AT1G21860 30.095 525 311 16 16 527 15 496 6.86e-59 205
MS.gene64676.t1 AT4G25240 30.570 579 355 21 1 561 1 550 5.80e-58 204
MS.gene64676.t1 AT4G25240 30.570 579 355 21 1 561 1 550 5.80e-58 204
MS.gene64676.t1 AT1G76160 29.174 569 356 15 1 561 1 530 8.15e-58 202
MS.gene64676.t1 AT1G21850 29.944 531 317 17 9 527 9 496 1.89e-57 201
MS.gene64676.t1 AT4G39830 30.588 510 262 19 96 561 8 469 2.61e-56 196
MS.gene64676.t1 AT4G12420 28.796 573 363 19 8 561 1 547 3.69e-56 199
MS.gene64676.t1 AT4G12420 28.796 573 363 19 8 561 1 547 3.69e-56 199
MS.gene64676.t1 AT5G66920 28.829 555 337 16 21 561 28 538 8.09e-55 194
MS.gene64676.t1 AT1G75790 31.214 519 312 16 14 521 11 495 2.84e-54 192
MS.gene64676.t1 AT1G41830 28.371 571 358 17 1 561 2 531 6.01e-54 192
MS.gene64676.t1 AT5G51480 28.159 554 343 20 31 561 29 550 9.92e-54 192
MS.gene64676.t1 AT4G22010 29.525 569 348 18 5 561 3 530 1.21e-51 185
MS.gene64676.t1 AT5G48450 28.974 497 320 14 32 521 31 501 2.77e-51 185
MS.gene64676.t1 AT5G48450 28.974 497 320 14 32 521 31 501 5.87e-51 185
MS.gene64676.t1 AT4G38420 28.491 530 315 16 14 521 12 499 7.75e-50 181
MS.gene64676.t1 AT4G28090 27.619 525 327 16 51 561 49 534 7.88e-50 181
MS.gene64676.t1 AT4G38420 28.125 512 304 16 14 503 12 481 4.26e-45 166
MS.gene64676.t1 AT2G23630 29.446 523 318 17 50 561 50 532 8.43e-45 166
MS.gene64676.t1 AT2G23630 29.446 523 318 17 50 561 55 537 1.14e-44 166
MS.gene64676.t1 AT5G21105 34.337 332 196 9 215 539 51 367 4.12e-43 159
MS.gene64676.t1 AT4G37160 26.297 559 360 17 15 561 16 534 1.98e-42 160
MS.gene64676.t1 AT4G38420 27.686 484 287 15 14 475 12 454 2.39e-41 155
MS.gene64676.t1 AT1G55560 28.762 525 315 21 48 558 44 523 1.75e-40 154
MS.gene64676.t1 AT1G55570 28.482 481 306 16 50 521 49 500 1.88e-38 149
MS.gene64676.t1 AT3G13390 27.680 513 301 20 34 521 32 499 9.26e-38 147
MS.gene64676.t1 AT3G13400 28.185 518 320 20 19 521 17 497 1.51e-37 146
MS.gene64676.t1 AT3G13400 28.185 518 320 20 19 521 17 497 1.51e-37 146
MS.gene64676.t1 AT4G37160 26.625 477 291 18 15 475 16 449 8.32e-33 131

Find 169 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAAGATACATTGTTTA+TGG 0.117825 5.2:-11903279 None:intergenic
AAACCCATTGTAACTGTAAA+TGG 0.125781 5.2:+11901903 MS.gene64676:CDS
TGGCTGAGGGCCACTGTCTA+TGG 0.136642 5.2:+11902264 MS.gene64676:CDS
ATCAAACTGGTATTTCTTTA+TGG 0.153957 5.2:-11901751 None:intergenic
ACAGCTTTCCTTGTTGAAAA+TGG 0.188076 5.2:+11903826 MS.gene64676:CDS
AGGATCTACCAAGTTGTATT+TGG 0.231258 5.2:-11903597 None:intergenic
ACTTATGAATTCAACGTTAC+TGG 0.262993 5.2:+11902204 MS.gene64676:CDS
TTTCTCTTATTTCTCTTTGT+TGG 0.268775 5.2:+11901705 MS.gene64676:CDS
TGAAAAGCAAGGAAACAAAA+TGG 0.292112 5.2:+11902506 MS.gene64676:CDS
TTGGACTGCAATTCGCTTCC+AGG 0.292846 5.2:+11903655 MS.gene64676:CDS
TTTGGAGCTGCACACTGGTT+GGG 0.293072 5.2:+11903795 MS.gene64676:CDS
TTCATAAGTATAGCTGTTTC+CGG 0.310736 5.2:-11902190 None:intergenic
GAGGCAAGATTGGCGGTTAA+TGG 0.319568 5.2:-11903407 None:intergenic
ACTGTAAATGGGAGGTTTCC+AGG 0.332526 5.2:+11901915 MS.gene64676:CDS
TACTGTTGAGCTAGTGTTGC+AGG 0.335732 5.2:+11903469 MS.gene64676:CDS
CAAAGAAAAGTTCGTCGTTA+AGG 0.342776 5.2:-11902827 None:intergenic
GTATGTGCATCTGACATATT+TGG 0.346152 5.2:-11902537 None:intergenic
GGAAATGGTGTTCCAAGTTT+AGG 0.347068 5.2:-11902303 None:intergenic
GGCTGAGGGCCACTGTCTAT+GGG 0.363346 5.2:+11902265 MS.gene64676:CDS
TTGGAGCTGCACACTGGTTG+GGG 0.365693 5.2:+11903796 MS.gene64676:CDS
AGGATGGGTAGGACAGTGTT+TGG 0.373829 5.2:-11903071 None:intergenic
TTGGTTCATGCATTGTCATT+TGG 0.381373 5.2:+11903777 MS.gene64676:CDS
TCACATCCATTCCATCTTCA+TGG 0.382480 5.2:+11903515 MS.gene64676:CDS
TATTTGGCTGGGTCTTTAGC+AGG 0.383699 5.2:-11903581 None:intergenic
TGGTCAAACCACAAATGTTC+TGG 0.386916 5.2:+11902935 MS.gene64676:CDS
TATACAATTGCACAGGTGTT+TGG 0.388641 5.2:+11903758 MS.gene64676:intron
TTCGTTGTTGGAAGTGGTAT+TGG 0.390522 5.2:+11903548 MS.gene64676:CDS
GAAAAGCAAGGAAACAAAAT+GGG 0.398688 5.2:+11902507 MS.gene64676:CDS
CCAACTGTGTTCCTTTCAAT+AGG 0.402563 5.2:-11903617 None:intergenic
AAAGAAAAGTTCGTCGTTAA+GGG 0.404082 5.2:-11902826 None:intergenic
CCGGTATAGTTGAAAGGAAT+TGG 0.404144 5.2:-11903380 None:intergenic
AATACAACATGTCGATTCAT+TGG 0.410485 5.2:+11901997 MS.gene64676:CDS
GGATGGGTAGGACAGTGTTT+GGG 0.413727 5.2:-11903070 None:intergenic
TCTACCAAGTTGTATTTGGC+TGG 0.414320 5.2:-11903593 None:intergenic
GCCTGTCAAAGAGGCAAGAT+TGG 0.416849 5.2:-11903417 None:intergenic
CTATTGAAAGGAACACAGTT+GGG 0.417503 5.2:+11903618 MS.gene64676:CDS
TATAATAACTCACATCAAAC+TGG 0.420106 5.2:-11901764 None:intergenic
GTTCATGCCAACCAAGTTGC+CGG 0.422586 5.2:+11902957 MS.gene64676:CDS
GCCAATCTTGCCTCTTTGAC+AGG 0.432874 5.2:+11903416 MS.gene64676:CDS
ATTTGGAGCTGCACACTGGT+TGG 0.433682 5.2:+11903794 MS.gene64676:CDS
AAAGGAATTGGTGGGCGGTC+AGG 0.434738 5.2:-11903368 None:intergenic
CGAATTCTCTAGCTGGTTGT+GGG 0.437112 5.2:-11902329 None:intergenic
GCAGAACATAATGGCAAGCT+TGG 0.440078 5.2:+11901659 None:intergenic
TCGAATTCTCTAGCTGGTTG+TGG 0.441116 5.2:-11902330 None:intergenic
CTAAACCTATAGTGTAAAAG+AGG 0.446745 5.2:-11903208 None:intergenic
TAGAGAATTCGAAATTGTCT+TGG 0.446829 5.2:+11902341 MS.gene64676:CDS
CTCCCATTTACAGTTACAAT+GGG 0.446996 5.2:-11901906 None:intergenic
ACTTTGAGAGGAACATTAGC+AGG 0.448431 5.2:-11903176 None:intergenic
AGAACCGATTGACCTTGGTT+TGG 0.455032 5.2:-11903850 None:intergenic
ATCGGTTCTGCCACCACCTA+AGG 0.457995 5.2:+11903864 MS.gene64676:CDS
TAGCTCAACAGTAGAGTTGA+AGG 0.463131 5.2:-11903459 None:intergenic
TAGCATGAAGGAAGGTCCTT+AGG 0.463497 5.2:-11903880 None:intergenic
GGGCAGCGTTGATGATTCTC+AGG 0.464968 5.2:-11902806 None:intergenic
CTTATGAATTCAACGTTACT+GGG 0.465663 5.2:+11902205 MS.gene64676:CDS
TCTCTAGCTGGTTGTGGGAA+AGG 0.468100 5.2:-11902324 None:intergenic
TCAGATGCACATACAATCAA+TGG 0.468699 5.2:+11902546 MS.gene64676:CDS
CTACCAAGTTGTATTTGGCT+GGG 0.473331 5.2:-11903592 None:intergenic
TAATGGTTGGGCGGATGGAC+CGG 0.475246 5.2:+11902140 MS.gene64676:CDS
AGAGAATTCGAAATTGTCTT+GGG 0.476328 5.2:+11902342 MS.gene64676:CDS
AAAAGTTATATCCATGAAGA+TGG 0.477970 5.2:-11903526 None:intergenic
GGCATGAACCAGAACATTTG+TGG 0.479763 5.2:-11902943 None:intergenic
CGAAGTACCTACCGGCAACT+TGG 0.481175 5.2:-11902968 None:intergenic
TCTTGCCCCACATGCCTCAA+TGG 0.483536 5.2:+11903239 MS.gene64676:CDS
CCAATTCCTTTCAACTATAC+CGG 0.486802 5.2:+11903380 MS.gene64676:CDS
TATCGTAATGGTTGGGCGGA+TGG 0.489885 5.2:+11902135 MS.gene64676:CDS
GCTTGAAGAAGCGCAATTTG+AGG 0.496096 5.2:-11903305 None:intergenic
ACATACCTGGATTATCTGCC+TGG 0.497581 5.2:-11903673 None:intergenic
AACCCATTGTAACTGTAAAT+GGG 0.498924 5.2:+11901904 MS.gene64676:CDS
GAACAAGGAAATAGCGGTCC+TGG 0.502785 5.2:-11902573 None:intergenic
TAAACAATATCGTAATGGTT+GGG 0.504714 5.2:+11902128 MS.gene64676:CDS
ATGGATGTGATTCAACTGTT+AGG 0.506413 5.2:-11903502 None:intergenic
AGTATAGCCTGAGTGGTGAA+TGG 0.508417 5.2:-11902903 None:intergenic
CCTCCCATTTACAGTTACAA+TGG 0.508798 5.2:-11901907 None:intergenic
ATAGTAATTATGCCTAAACT+TGG 0.510589 5.2:+11902291 MS.gene64676:CDS
CAGGGCCAACTATCTATGCT+AGG 0.510664 5.2:+11901934 MS.gene64676:CDS
AGCTCACTACTTCAACATCA+AGG 0.511015 5.2:+11903325 MS.gene64676:CDS
TTAAACAATATCGTAATGGT+TGG 0.511801 5.2:+11902127 MS.gene64676:CDS
AAACCTGTGTCATTGCTAGC+TGG 0.513434 5.2:-11903104 None:intergenic
TGGACCAAACCAAGGTCAAT+CGG 0.514301 5.2:+11903846 MS.gene64676:CDS
ACAATTTCGAATTCTCTAGC+TGG 0.516474 5.2:-11902336 None:intergenic
AGCTGGCAACTGTGGAAGGA+TGG 0.518030 5.2:-11903087 None:intergenic
AACACAGTTGGGGTTCCTAC+AGG 0.519624 5.2:+11903629 MS.gene64676:CDS
CAGAACATAATGGCAAGCTT+GGG 0.520370 5.2:+11901660 None:intergenic
AGAACATTTGTGGTTTGACC+AGG 0.521945 5.2:-11902933 None:intergenic
TTGGGGTTCCTACAGGTGGT+TGG 0.522444 5.2:+11903636 MS.gene64676:CDS
GGCATCCATAAAAGCCTTGG+TGG 0.532942 5.2:-11902994 None:intergenic
GTACCTACCGGCAACTTGGT+TGG 0.533001 5.2:-11902964 None:intergenic
CCTTCCCTAGCATAGATAGT+TGG 0.534822 5.2:-11901939 None:intergenic
CGCTTCCAGGCAGATAATCC+AGG 0.538621 5.2:+11903668 MS.gene64676:CDS
GCTGGTTGTGGGAAAGGAAA+TGG 0.540260 5.2:-11902318 None:intergenic
TTCAGACACGTTTGCAATGG+AGG 0.542780 5.2:+11902761 MS.gene64676:intron
GGACTTAAACAATATCGTAA+TGG 0.543784 5.2:+11902123 MS.gene64676:CDS
GTGGCAGAACCGATTGACCT+TGG 0.544566 5.2:-11903855 None:intergenic
CTGTAAATGGGAGGTTTCCA+GGG 0.547833 5.2:+11901916 MS.gene64676:CDS
CTAGCATAGATAGTTGGCCC+TGG 0.548648 5.2:-11901933 None:intergenic
TGGAGCTGCACACTGGTTGG+GGG 0.549892 5.2:+11903797 MS.gene64676:CDS
TGGGGCATCCATAAAAGCCT+TGG 0.550639 5.2:-11902997 None:intergenic
GCTGGCAACTGTGGAAGGAT+GGG 0.551056 5.2:-11903086 None:intergenic
TACTCTCGTGCCTGTCAAAG+AGG 0.551353 5.2:-11903426 None:intergenic
TTATATCCATGAAGATGGAA+TGG 0.552593 5.2:-11903521 None:intergenic
GTTTATGGAAGCAAGAAACC+TGG 0.553677 5.2:-11903264 None:intergenic
TGCTAGCTGGCAACTGTGGA+AGG 0.554643 5.2:-11903091 None:intergenic
TACTTACGCTTCTCAGAACA+AGG 0.554846 5.2:-11902588 None:intergenic
TTGTGCATGCAATAGGTGAA+TGG 0.560210 5.2:+11902460 MS.gene64676:intron
TACAAAACCATTCACCACTC+AGG 0.561399 5.2:+11902896 MS.gene64676:CDS
CTGGTTCCATTGAGGCATGT+GGG 0.562902 5.2:-11903245 None:intergenic
CCACATGCCTCAATGGAACC+AGG 0.568649 5.2:+11903246 MS.gene64676:CDS
TAGCTGTTTCCGGTCTGTAT+CGG 0.572618 5.2:-11902180 None:intergenic
TTTGTTGTCCACTTGAATTG+GGG 0.573349 5.2:-11903015 None:intergenic
GCTGAGGGCCACTGTCTATG+GGG 0.574927 5.2:+11902266 MS.gene64676:CDS
GTGGAAGAGATTGAAAAGCA+AGG 0.575516 5.2:+11902495 MS.gene64676:CDS
CCTGGTTCCATTGAGGCATG+TGG 0.577415 5.2:-11903246 None:intergenic
CATGTTGTATTGTGCATGGT+TGG 0.578067 5.2:-11901985 None:intergenic
CCTATTGAAAGGAACACAGT+TGG 0.579873 5.2:+11903617 MS.gene64676:CDS
GAAGGAAGGTCCTTAGGTGG+TGG 0.582584 5.2:-11903874 None:intergenic
CAGGCTATACTAATTGCTCC+TGG 0.582951 5.2:+11902915 MS.gene64676:CDS
TGTCATTTGGAGCTGCACAC+TGG 0.584595 5.2:+11903790 MS.gene64676:CDS
AGGTTTCTATCAACTTTGAG+AGG 0.585939 5.2:-11903188 None:intergenic
CTGGGCAAAGAGGAACACTA+TGG 0.589789 5.2:+11902223 MS.gene64676:CDS
TGAACCGATGACTAGCATGA+AGG 0.591968 5.2:-11903892 None:intergenic
TGTCAAAGAGGCAAGATTGG+CGG 0.592555 5.2:-11903414 None:intergenic
TATGGATGCCCCAATTCAAG+TGG 0.594173 5.2:+11903007 MS.gene64676:CDS
GGCGCACCGGTATAGTTGAA+AGG 0.596639 5.2:-11903386 None:intergenic
ACTTGGTAGATCCTATTGAA+AGG 0.598347 5.2:+11903606 MS.gene64676:CDS
AGACCCAGCCAAATACAACT+TGG 0.601571 5.2:+11903589 MS.gene64676:CDS
AGGGCCAACTATCTATGCTA+GGG 0.604239 5.2:+11901935 MS.gene64676:CDS
CATACAATCAATGGAAAACC+AGG 0.607466 5.2:+11902555 MS.gene64676:CDS
TATTGAAAGGAACACAGTTG+GGG 0.607732 5.2:+11903619 MS.gene64676:CDS
CAAGAAACCTGGTTCCATTG+AGG 0.615395 5.2:-11903253 None:intergenic
TGGTTCCATTGAGGCATGTG+GGG 0.616175 5.2:-11903244 None:intergenic
TCATTGCTAGCTGGCAACTG+TGG 0.616974 5.2:-11903095 None:intergenic
GCAACTGTGGAAGGATGGGT+AGG 0.617827 5.2:-11903082 None:intergenic
TATAGTTGAAAGGAATTGGT+GGG 0.618203 5.2:-11903376 None:intergenic
GGACACTGTGTGATGTAAGC+CGG 0.619591 5.2:-11902159 None:intergenic
GTATAGTTGAAAGGAATTGG+TGG 0.620277 5.2:-11903377 None:intergenic
CCAACTATCTATGCTAGGGA+AGG 0.620505 5.2:+11901939 MS.gene64676:CDS
TTCAACGTTACTGGGCAAAG+AGG 0.621393 5.2:+11902213 MS.gene64676:CDS
GCTCACTACTTCAACATCAA+GGG 0.625835 5.2:+11903326 MS.gene64676:CDS
AGTTGCCGGTAGGTACTTCG+TGG 0.626007 5.2:+11902971 MS.gene64676:CDS
ACACAGTGTCCGATACAGAC+CGG 0.627738 5.2:+11902171 MS.gene64676:CDS
ACAATATCGTAATGGTTGGG+CGG 0.630235 5.2:+11902131 MS.gene64676:CDS
TCGACATGTTGTATTGTGCA+TGG 0.631211 5.2:-11901989 None:intergenic
AGCAATTAGTATAGCCTGAG+TGG 0.636864 5.2:-11902910 None:intergenic
ACAGTTGGGGTTCCTACAGG+TGG 0.639766 5.2:+11903632 MS.gene64676:CDS
TTCTCAGAACAAGGAAATAG+CGG 0.640516 5.2:-11902579 None:intergenic
GGTGGCCACGAAGTACCTAC+CGG 0.640930 5.2:-11902976 None:intergenic
TTTGCAATGGAGGTAGAACA+AGG 0.640967 5.2:+11902771 MS.gene64676:CDS
TGTCATGTTGTGACCCGCAA+TGG 0.642364 5.2:-11902850 None:intergenic
CCGATGACTAGCATGAAGGA+AGG 0.646571 5.2:-11903888 None:intergenic
CTTTGAGAGGAACATTAGCA+GGG 0.646771 5.2:-11903175 None:intergenic
ATTGGCGGTTAATGGCGCAC+CGG 0.649826 5.2:-11903399 None:intergenic
GTTGAAAATGGACCAAACCA+AGG 0.653138 5.2:+11903838 MS.gene64676:CDS
CATGAAGGAAGGTCCTTAGG+TGG 0.653405 5.2:-11903877 None:intergenic
CCATTGTAACTGTAAATGGG+AGG 0.656751 5.2:+11901907 MS.gene64676:CDS
TGCATGCAATAGGTGAATGG+TGG 0.661953 5.2:+11902463 MS.gene64676:intron
ATTGCAGTCCAACCACCTGT+AGG 0.662605 5.2:-11903644 None:intergenic
TACTATTGCCCCATAGACAG+TGG 0.671175 5.2:-11902274 None:intergenic
GGCAAAGAGGAACACTATGG+TGG 0.671860 5.2:+11902226 MS.gene64676:CDS
AAAAGCAAGGAAACAAAATG+GGG 0.672657 5.2:+11902508 MS.gene64676:CDS
ATGCCAACCAAGTTGCCGGT+AGG 0.673121 5.2:+11902961 MS.gene64676:CDS
TGAATGGTGGAACAATGATG+TGG 0.681264 5.2:+11902476 MS.gene64676:CDS
TGTGCATCTGACATATTTGG+TGG 0.682225 5.2:-11902534 None:intergenic
TTGCCAGCTAGCAATGACAC+AGG 0.686241 5.2:+11903101 MS.gene64676:CDS
TCACAACATGACAGTAGTGG+AGG 0.687744 5.2:+11902860 MS.gene64676:CDS
CAGCGTTGATGATTCTCAGG+AGG 0.689860 5.2:-11902803 None:intergenic
GGGTCACAACATGACAGTAG+TGG 0.698467 5.2:+11902857 MS.gene64676:CDS
TAGGTACTTCGTGGCCACCA+AGG 0.707531 5.2:+11902980 MS.gene64676:CDS
TTGCAATGGAGGTAGAACAA+GGG 0.716920 5.2:+11902772 MS.gene64676:CDS
AGTTGAAAGGAATTGGTGGG+CGG 0.718230 5.2:-11903373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTATAATATTTAACTTTTA+TGG + chr5.2:11903714-11903733 MS.gene64676:intron 10.0%
!! AAGTATTATAAAAGATTCAT+CGG + chr5.2:11902400-11902419 MS.gene64676:intron 15.0%
!! TAAATCGATTAAATACATAT+AGG + chr5.2:11902033-11902052 MS.gene64676:intron 15.0%
!! GTTAAATATTATAGAAGCTT+AGG - chr5.2:11903709-11903728 None:intergenic 20.0%
!! TATACTGTAGATCTAATTAA+CGG + chr5.2:11902646-11902665 MS.gene64676:intron 20.0%
! AAAAGTTATATCCATGAAGA+TGG - chr5.2:11903529-11903548 None:intergenic 25.0%
! AGAAAGAACAAAATGCTATA+AGG - chr5.2:11901843-11901862 None:intergenic 25.0%
! ATACTGTAGATCTAATTAAC+GGG + chr5.2:11902647-11902666 MS.gene64676:intron 25.0%
! ATAGTAATTATGCCTAAACT+TGG + chr5.2:11902291-11902310 MS.gene64676:CDS 25.0%
! ATCAAACTGGTATTTCTTTA+TGG - chr5.2:11901754-11901773 None:intergenic 25.0%
! CACAAAAGATACATTGTTTA+TGG - chr5.2:11903282-11903301 None:intergenic 25.0%
! GAAAGAACAAAATGCTATAA+GGG - chr5.2:11901842-11901861 None:intergenic 25.0%
! TAAACAATATCGTAATGGTT+GGG + chr5.2:11902128-11902147 MS.gene64676:CDS 25.0%
! TATAATAACTCACATCAAAC+TGG - chr5.2:11901767-11901786 None:intergenic 25.0%
! TTAAACAATATCGTAATGGT+TGG + chr5.2:11902127-11902146 MS.gene64676:CDS 25.0%
! TTGCTAGCTATAATAAGTTA+AGG - chr5.2:11901810-11901829 None:intergenic 25.0%
!! TTTCTCTTATTTCTCTTTGT+TGG + chr5.2:11901705-11901724 MS.gene64676:CDS 25.0%
!! TTTTGTATATACAATTGCAC+AGG + chr5.2:11903751-11903770 MS.gene64676:intron 25.0%
AAAAGCAAGGAAACAAAATG+GGG + chr5.2:11902508-11902527 MS.gene64676:CDS 30.0%
AAACCCATTGTAACTGTAAA+TGG + chr5.2:11901903-11901922 MS.gene64676:CDS 30.0%
AAAGAAAAGTTCGTCGTTAA+GGG - chr5.2:11902829-11902848 None:intergenic 30.0%
AACCCATTGTAACTGTAAAT+GGG + chr5.2:11901904-11901923 MS.gene64676:CDS 30.0%
ACTTATGAATTCAACGTTAC+TGG + chr5.2:11902204-11902223 MS.gene64676:CDS 30.0%
AGAGAATTCGAAATTGTCTT+GGG + chr5.2:11902342-11902361 MS.gene64676:CDS 30.0%
CTAAACCTATAGTGTAAAAG+AGG - chr5.2:11903211-11903230 None:intergenic 30.0%
CTTATGAATTCAACGTTACT+GGG + chr5.2:11902205-11902224 MS.gene64676:CDS 30.0%
GAAAAGCAAGGAAACAAAAT+GGG + chr5.2:11902507-11902526 MS.gene64676:CDS 30.0%
GGACTTAAACAATATCGTAA+TGG + chr5.2:11902123-11902142 MS.gene64676:CDS 30.0%
TAATTGTTTGTGCATGCAAT+AGG + chr5.2:11902453-11902472 MS.gene64676:intron 30.0%
TAGAGAATTCGAAATTGTCT+TGG + chr5.2:11902341-11902360 MS.gene64676:CDS 30.0%
TATAGTTGAAAGGAATTGGT+GGG - chr5.2:11903379-11903398 None:intergenic 30.0%
TGAAAAGCAAGGAAACAAAA+TGG + chr5.2:11902506-11902525 MS.gene64676:CDS 30.0%
TTATATCCATGAAGATGGAA+TGG - chr5.2:11903524-11903543 None:intergenic 30.0%
TTATTATAGCTAGCAATGCA+AGG + chr5.2:11901814-11901833 MS.gene64676:intron 30.0%
! AGAAACCTCTTTTACACTAT+AGG + chr5.2:11903203-11903222 MS.gene64676:CDS 30.0%
! CTCTTTTACACTATAGGTTT+AGG + chr5.2:11903209-11903228 MS.gene64676:CDS 30.0%
! TTCATAAGTATAGCTGTTTC+CGG - chr5.2:11902193-11902212 None:intergenic 30.0%
!! AATACAACATGTCGATTCAT+TGG + chr5.2:11901997-11902016 MS.gene64676:CDS 30.0%
!! ATCGTATATATGCTTGTTGT+AGG + chr5.2:11902097-11902116 MS.gene64676:intron 30.0%
!! TTTTGTTGTCCACTTGAATT+GGG - chr5.2:11903019-11903038 None:intergenic 30.0%
!!! GGATATAACTTTTTCGTTGT+TGG + chr5.2:11903536-11903555 MS.gene64676:CDS 30.0%
ACAATTTCGAATTCTCTAGC+TGG - chr5.2:11902339-11902358 None:intergenic 35.0%
ACAGCTTTCCTTGTTGAAAA+TGG + chr5.2:11903826-11903845 MS.gene64676:CDS 35.0%
ACTTGGTAGATCCTATTGAA+AGG + chr5.2:11903606-11903625 MS.gene64676:CDS 35.0%
AGGATCTACCAAGTTGTATT+TGG - chr5.2:11903600-11903619 None:intergenic 35.0%
AGGTTTCTATCAACTTTGAG+AGG - chr5.2:11903191-11903210 None:intergenic 35.0%
ATGGATGTGATTCAACTGTT+AGG - chr5.2:11903505-11903524 None:intergenic 35.0%
CAAAGAAAAGTTCGTCGTTA+AGG - chr5.2:11902830-11902849 None:intergenic 35.0%
CATACAATCAATGGAAAACC+AGG + chr5.2:11902555-11902574 MS.gene64676:CDS 35.0%
CCAATTCCTTTCAACTATAC+CGG + chr5.2:11903380-11903399 MS.gene64676:CDS 35.0%
CTATTGAAAGGAACACAGTT+GGG + chr5.2:11903618-11903637 MS.gene64676:CDS 35.0%
CTCCCATTTACAGTTACAAT+GGG - chr5.2:11901909-11901928 None:intergenic 35.0%
GTATAGTTGAAAGGAATTGG+TGG - chr5.2:11903380-11903399 None:intergenic 35.0%
GTATGTGCATCTGACATATT+TGG - chr5.2:11902540-11902559 None:intergenic 35.0%
TATACAATTGCACAGGTGTT+TGG + chr5.2:11903758-11903777 MS.gene64676:intron 35.0%
TATTGAAAGGAACACAGTTG+GGG + chr5.2:11903619-11903638 MS.gene64676:CDS 35.0%
TCAGATGCACATACAATCAA+TGG + chr5.2:11902546-11902565 MS.gene64676:CDS 35.0%
TTCTCAGAACAAGGAAATAG+CGG - chr5.2:11902582-11902601 None:intergenic 35.0%
TTGGTTCATGCATTGTCATT+TGG + chr5.2:11903777-11903796 MS.gene64676:CDS 35.0%
! TTTGTTGTCCACTTGAATTG+GGG - chr5.2:11903018-11903037 None:intergenic 35.0%
!! ATATATGCTTGTTGTAGGCA+TGG + chr5.2:11902102-11902121 MS.gene64676:intron 35.0%
!! GTTTTGTTGTCCACTTGAAT+TGG - chr5.2:11903020-11903039 None:intergenic 35.0%
!! TTTTTCAGACACGTTTGCAA+TGG + chr5.2:11902758-11902777 MS.gene64676:intron 35.0%
!!! AACTTTTTCGTTGTTGGAAG+TGG + chr5.2:11903542-11903561 MS.gene64676:CDS 35.0%
ACAATATCGTAATGGTTGGG+CGG + chr5.2:11902131-11902150 MS.gene64676:CDS 40.0%
AGAACATTTGTGGTTTGACC+AGG - chr5.2:11902936-11902955 None:intergenic 40.0%
AGCAATTAGTATAGCCTGAG+TGG - chr5.2:11902913-11902932 None:intergenic 40.0%
AGCTCACTACTTCAACATCA+AGG + chr5.2:11903325-11903344 MS.gene64676:CDS 40.0%
CATGTTGTATTGTGCATGGT+TGG - chr5.2:11901988-11902007 None:intergenic 40.0%
CCAACTGTGTTCCTTTCAAT+AGG - chr5.2:11903620-11903639 None:intergenic 40.0%
CCATTGTAACTGTAAATGGG+AGG + chr5.2:11901907-11901926 MS.gene64676:CDS 40.0%
CCGGTATAGTTGAAAGGAAT+TGG - chr5.2:11903383-11903402 None:intergenic 40.0%
CCTATTGAAAGGAACACAGT+TGG + chr5.2:11903617-11903636 MS.gene64676:CDS 40.0%
CCTCCCATTTACAGTTACAA+TGG - chr5.2:11901910-11901929 None:intergenic 40.0%
CTACCAAGTTGTATTTGGCT+GGG - chr5.2:11903595-11903614 None:intergenic 40.0%
GCTCACTACTTCAACATCAA+GGG + chr5.2:11903326-11903345 MS.gene64676:CDS 40.0%
GGAAATGGTGTTCCAAGTTT+AGG - chr5.2:11902306-11902325 None:intergenic 40.0%
GTGGAAGAGATTGAAAAGCA+AGG + chr5.2:11902495-11902514 MS.gene64676:CDS 40.0%
GTTGAAAATGGACCAAACCA+AGG + chr5.2:11903838-11903857 MS.gene64676:CDS 40.0%
GTTTATGGAAGCAAGAAACC+TGG - chr5.2:11903267-11903286 None:intergenic 40.0%
TACAAAACCATTCACCACTC+AGG + chr5.2:11902896-11902915 MS.gene64676:CDS 40.0%
TACTTACGCTTCTCAGAACA+AGG - chr5.2:11902591-11902610 None:intergenic 40.0%
TAGCTCAACAGTAGAGTTGA+AGG - chr5.2:11903462-11903481 None:intergenic 40.0%
TCACATCCATTCCATCTTCA+TGG + chr5.2:11903515-11903534 MS.gene64676:CDS 40.0%
TCGACATGTTGTATTGTGCA+TGG - chr5.2:11901992-11902011 None:intergenic 40.0%
TCTACCAAGTTGTATTTGGC+TGG - chr5.2:11903596-11903615 None:intergenic 40.0%
TGGTCAAACCACAAATGTTC+TGG + chr5.2:11902935-11902954 MS.gene64676:CDS 40.0%
TGTGCATCTGACATATTTGG+TGG - chr5.2:11902537-11902556 None:intergenic 40.0%
TTCGTTGTTGGAAGTGGTAT+TGG + chr5.2:11903548-11903567 MS.gene64676:CDS 40.0%
TTGCAATGGAGGTAGAACAA+GGG + chr5.2:11902772-11902791 MS.gene64676:CDS 40.0%
TTGTGCATGCAATAGGTGAA+TGG + chr5.2:11902460-11902479 MS.gene64676:intron 40.0%
TTTGCAATGGAGGTAGAACA+AGG + chr5.2:11902771-11902790 MS.gene64676:CDS 40.0%
! ACTTTGAGAGGAACATTAGC+AGG - chr5.2:11903179-11903198 None:intergenic 40.0%
! CGAACTTTTCTTTGCCATTG+CGG + chr5.2:11902836-11902855 MS.gene64676:CDS 40.0%
! CTTTGAGAGGAACATTAGCA+GGG - chr5.2:11903178-11903197 None:intergenic 40.0%
! GAACTTTTCTTTGCCATTGC+GGG + chr5.2:11902837-11902856 MS.gene64676:CDS 40.0%
! TGAATGGTGGAACAATGATG+TGG + chr5.2:11902476-11902495 MS.gene64676:CDS 40.0%
!! CAGTTACAATGGGTTTTGCA+TGG - chr5.2:11901899-11901918 None:intergenic 40.0%
!! GGTTTGGTCCATTTTCAACA+AGG - chr5.2:11903837-11903856 None:intergenic 40.0%
ACATACCTGGATTATCTGCC+TGG - chr5.2:11903676-11903695 None:intergenic 45.0%
ACTGTAAATGGGAGGTTTCC+AGG + chr5.2:11901915-11901934 MS.gene64676:CDS 45.0%
AGAACCGATTGACCTTGGTT+TGG - chr5.2:11903853-11903872 None:intergenic 45.0%
AGACCCAGCCAAATACAACT+TGG + chr5.2:11903589-11903608 MS.gene64676:CDS 45.0%
AGGACAACTTCAGACATACC+TGG - chr5.2:11903689-11903708 None:intergenic 45.0%
AGGGCCAACTATCTATGCTA+GGG + chr5.2:11901935-11901954 MS.gene64676:CDS 45.0%
AGTATAGCCTGAGTGGTGAA+TGG - chr5.2:11902906-11902925 None:intergenic 45.0%
AGTTGAAAGGAATTGGTGGG+CGG - chr5.2:11903376-11903395 None:intergenic 45.0%
CAAGAAACCTGGTTCCATTG+AGG - chr5.2:11903256-11903275 None:intergenic 45.0%
CAGGCTATACTAATTGCTCC+TGG + chr5.2:11902915-11902934 MS.gene64676:CDS 45.0%
CCAACTATCTATGCTAGGGA+AGG + chr5.2:11901939-11901958 MS.gene64676:CDS 45.0%
CCTTCCCTAGCATAGATAGT+TGG - chr5.2:11901942-11901961 None:intergenic 45.0%
CGAATTCTCTAGCTGGTTGT+GGG - chr5.2:11902332-11902351 None:intergenic 45.0%
CTGTAAATGGGAGGTTTCCA+GGG + chr5.2:11901916-11901935 MS.gene64676:CDS 45.0%
GGCATGAACCAGAACATTTG+TGG - chr5.2:11902946-11902965 None:intergenic 45.0%
TACTATTGCCCCATAGACAG+TGG - chr5.2:11902277-11902296 None:intergenic 45.0%
TACTGTTGAGCTAGTGTTGC+AGG + chr5.2:11903469-11903488 MS.gene64676:CDS 45.0%
TAGCATGAAGGAAGGTCCTT+AGG - chr5.2:11903883-11903902 None:intergenic 45.0%
TATGGATGCCCCAATTCAAG+TGG + chr5.2:11903007-11903026 MS.gene64676:CDS 45.0%
TATTTGGCTGGGTCTTTAGC+AGG - chr5.2:11903584-11903603 None:intergenic 45.0%
TCACAACATGACAGTAGTGG+AGG + chr5.2:11902860-11902879 MS.gene64676:CDS 45.0%
TCGAATTCTCTAGCTGGTTG+TGG - chr5.2:11902333-11902352 None:intergenic 45.0%
TGCATGCAATAGGTGAATGG+TGG + chr5.2:11902463-11902482 MS.gene64676:intron 45.0%
TGGACCAAACCAAGGTCAAT+CGG + chr5.2:11903846-11903865 MS.gene64676:CDS 45.0%
TGTCAAAGAGGCAAGATTGG+CGG - chr5.2:11903417-11903436 None:intergenic 45.0%
TTCAACGTTACTGGGCAAAG+AGG + chr5.2:11902213-11902232 MS.gene64676:CDS 45.0%
TTCAGACACGTTTGCAATGG+AGG + chr5.2:11902761-11902780 MS.gene64676:intron 45.0%
! AAACCTGTGTCATTGCTAGC+TGG - chr5.2:11903107-11903126 None:intergenic 45.0%
! GCTTGAAGAAGCGCAATTTG+AGG - chr5.2:11903308-11903327 None:intergenic 45.0%
! TAGCTGTTTCCGGTCTGTAT+CGG - chr5.2:11902183-11902202 None:intergenic 45.0%
!!! ATGCACACATTTTCTGGCTG+AGG + chr5.2:11902250-11902269 MS.gene64676:CDS 45.0%
!!! TGCACACATTTTCTGGCTGA+GGG + chr5.2:11902251-11902270 MS.gene64676:CDS 45.0%
AACACAGTTGGGGTTCCTAC+AGG + chr5.2:11903629-11903648 MS.gene64676:CDS 50.0%
ACACAGTGTCCGATACAGAC+CGG + chr5.2:11902171-11902190 MS.gene64676:CDS 50.0%
AGGATGGGTAGGACAGTGTT+TGG - chr5.2:11903074-11903093 None:intergenic 50.0%
ATTGCAGTCCAACCACCTGT+AGG - chr5.2:11903647-11903666 None:intergenic 50.0%
CAGGGCCAACTATCTATGCT+AGG + chr5.2:11901934-11901953 MS.gene64676:CDS 50.0%
CATGAAGGAAGGTCCTTAGG+TGG - chr5.2:11903880-11903899 None:intergenic 50.0%
CTAGCATAGATAGTTGGCCC+TGG - chr5.2:11901936-11901955 None:intergenic 50.0%
CTGGGCAAAGAGGAACACTA+TGG + chr5.2:11902223-11902242 MS.gene64676:CDS 50.0%
CTGGTTCCATTGAGGCATGT+GGG - chr5.2:11903248-11903267 None:intergenic 50.0%
GAACAAGGAAATAGCGGTCC+TGG - chr5.2:11902576-11902595 None:intergenic 50.0%
GAGGCAAGATTGGCGGTTAA+TGG - chr5.2:11903410-11903429 None:intergenic 50.0%
GCCAATCTTGCCTCTTTGAC+AGG + chr5.2:11903416-11903435 MS.gene64676:CDS 50.0%
GCCTGTCAAAGAGGCAAGAT+TGG - chr5.2:11903420-11903439 None:intergenic 50.0%
GCTGGTTGTGGGAAAGGAAA+TGG - chr5.2:11902321-11902340 None:intergenic 50.0%
GGACACTGTGTGATGTAAGC+CGG - chr5.2:11902162-11902181 None:intergenic 50.0%
GGATGGGTAGGACAGTGTTT+GGG - chr5.2:11903073-11903092 None:intergenic 50.0%
GGCAAAGAGGAACACTATGG+TGG + chr5.2:11902226-11902245 MS.gene64676:CDS 50.0%
GGCATCCATAAAAGCCTTGG+TGG - chr5.2:11902997-11903016 None:intergenic 50.0%
GGGTCACAACATGACAGTAG+TGG + chr5.2:11902857-11902876 MS.gene64676:CDS 50.0%
GTTCATGCCAACCAAGTTGC+CGG + chr5.2:11902957-11902976 MS.gene64676:CDS 50.0%
TACTCTCGTGCCTGTCAAAG+AGG - chr5.2:11903429-11903448 None:intergenic 50.0%
TATCGTAATGGTTGGGCGGA+TGG + chr5.2:11902135-11902154 MS.gene64676:CDS 50.0%
TCATTGCTAGCTGGCAACTG+TGG - chr5.2:11903098-11903117 None:intergenic 50.0%
TCTCTAGCTGGTTGTGGGAA+AGG - chr5.2:11902327-11902346 None:intergenic 50.0%
TGGTTCCATTGAGGCATGTG+GGG - chr5.2:11903247-11903266 None:intergenic 50.0%
TGTCATGTTGTGACCCGCAA+TGG - chr5.2:11902853-11902872 None:intergenic 50.0%
TTGCCAGCTAGCAATGACAC+AGG + chr5.2:11903101-11903120 MS.gene64676:CDS 50.0%
TTGGACTGCAATTCGCTTCC+AGG + chr5.2:11903655-11903674 MS.gene64676:CDS 50.0%
! ATTTGGAGCTGCACACTGGT+TGG + chr5.2:11903794-11903813 MS.gene64676:CDS 50.0%
! GGTGGCATGCACACATTTTC+TGG + chr5.2:11902244-11902263 MS.gene64676:CDS 50.0%
! TGGGGCATCCATAAAAGCCT+TGG - chr5.2:11903000-11903019 None:intergenic 50.0%
! TGTCATTTGGAGCTGCACAC+TGG + chr5.2:11903790-11903809 MS.gene64676:CDS 50.0%
! TTTGGAGCTGCACACTGGTT+GGG + chr5.2:11903795-11903814 MS.gene64676:CDS 50.0%
!! CAGCGTTGATGATTCTCAGG+AGG - chr5.2:11902806-11902825 None:intergenic 50.0%
ACAGTTGGGGTTCCTACAGG+TGG + chr5.2:11903632-11903651 MS.gene64676:CDS 55.0%
AGCTGGCAACTGTGGAAGGA+TGG - chr5.2:11903090-11903109 None:intergenic 55.0%
AGTTGCCGGTAGGTACTTCG+TGG + chr5.2:11902971-11902990 MS.gene64676:CDS 55.0%
ATGCCAACCAAGTTGCCGGT+AGG + chr5.2:11902961-11902980 MS.gene64676:CDS 55.0%
ATTGGCGGTTAATGGCGCAC+CGG - chr5.2:11903402-11903421 None:intergenic 55.0%
CCACATGCCTCAATGGAACC+AGG + chr5.2:11903246-11903265 MS.gene64676:CDS 55.0%
CCTGGTTCCATTGAGGCATG+TGG - chr5.2:11903249-11903268 None:intergenic 55.0%
CGCTTCCAGGCAGATAATCC+AGG + chr5.2:11903668-11903687 MS.gene64676:CDS 55.0%
GAAGGAAGGTCCTTAGGTGG+TGG - chr5.2:11903877-11903896 None:intergenic 55.0%
GCAACTGTGGAAGGATGGGT+AGG - chr5.2:11903085-11903104 None:intergenic 55.0%
GCTGGCAACTGTGGAAGGAT+GGG - chr5.2:11903089-11903108 None:intergenic 55.0%
GTACCTACCGGCAACTTGGT+TGG - chr5.2:11902967-11902986 None:intergenic 55.0%
GTGGCAGAACCGATTGACCT+TGG - chr5.2:11903858-11903877 None:intergenic 55.0%
TAATGGTTGGGCGGATGGAC+CGG + chr5.2:11902140-11902159 MS.gene64676:CDS 55.0%
TAGGTACTTCGTGGCCACCA+AGG + chr5.2:11902980-11902999 MS.gene64676:CDS 55.0%
TCTTGCCCCACATGCCTCAA+TGG + chr5.2:11903239-11903258 MS.gene64676:CDS 55.0%
TGCTAGCTGGCAACTGTGGA+AGG - chr5.2:11903094-11903113 None:intergenic 55.0%
TTGGGGTTCCTACAGGTGGT+TGG + chr5.2:11903636-11903655 MS.gene64676:CDS 55.0%
! AAAGGAATTGGTGGGCGGTC+AGG - chr5.2:11903371-11903390 None:intergenic 55.0%
! ATCGGTTCTGCCACCACCTA+AGG + chr5.2:11903864-11903883 MS.gene64676:CDS 55.0%
! CGAAGTACCTACCGGCAACT+TGG - chr5.2:11902971-11902990 None:intergenic 55.0%
! CGTGGCCACCAAGGCTTTTA+TGG + chr5.2:11902989-11903008 MS.gene64676:CDS 55.0%
! GGCGCACCGGTATAGTTGAA+AGG - chr5.2:11903389-11903408 None:intergenic 55.0%
! TTGGAGCTGCACACTGGTTG+GGG + chr5.2:11903796-11903815 MS.gene64676:CDS 55.0%
!! GGGCAGCGTTGATGATTCTC+AGG - chr5.2:11902809-11902828 None:intergenic 55.0%
GCTGAGGGCCACTGTCTATG+GGG + chr5.2:11902266-11902285 MS.gene64676:CDS 60.0%
GGCTGAGGGCCACTGTCTAT+GGG + chr5.2:11902265-11902284 MS.gene64676:CDS 60.0%
TGGCTGAGGGCCACTGTCTA+TGG + chr5.2:11902264-11902283 MS.gene64676:CDS 60.0%
! GGTGGCCACGAAGTACCTAC+CGG - chr5.2:11902979-11902998 None:intergenic 60.0%
! TGGAGCTGCACACTGGTTGG+GGG + chr5.2:11903797-11903816 MS.gene64676:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 11901669 11903903 11901669 ID=MS.gene64676
chr5.2 mRNA 11901669 11903903 11901669 ID=MS.gene64676.t1;Parent=MS.gene64676
chr5.2 exon 11901669 11901773 11901669 ID=MS.gene64676.t1.exon1;Parent=MS.gene64676.t1
chr5.2 CDS 11901669 11901773 11901669 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
chr5.2 exon 11901867 11902018 11901867 ID=MS.gene64676.t1.exon2;Parent=MS.gene64676.t1
chr5.2 CDS 11901867 11902018 11901867 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
chr5.2 exon 11902119 11902363 11902119 ID=MS.gene64676.t1.exon3;Parent=MS.gene64676.t1
chr5.2 CDS 11902119 11902363 11902119 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
chr5.2 exon 11902475 11902603 11902475 ID=MS.gene64676.t1.exon4;Parent=MS.gene64676.t1
chr5.2 CDS 11902475 11902603 11902475 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
chr5.2 exon 11902766 11903689 11902766 ID=MS.gene64676.t1.exon5;Parent=MS.gene64676.t1
chr5.2 CDS 11902766 11903689 11902766 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
chr5.2 exon 11903773 11903903 11903773 ID=MS.gene64676.t1.exon6;Parent=MS.gene64676.t1
chr5.2 CDS 11903773 11903903 11903773 ID=cds.MS.gene64676.t1;Parent=MS.gene64676.t1
Gene Sequence

>MS.gene64676

ATGGCAAGCTTGGGAAGTTTCATGTCTGCATTAAACTTTCTCTTATTTCTCTTTGTTGGTTTAATCTCTTCATCTGAAGCTGCCATAAAGAAATACCAGTTTGATGTGAGTTATTATATTTTGATCATATTCAGCATACCTTAACTTATTATAGCTAGCAATGCAAGGTTCCCTTATAGCATTTTGTTCTTTCTACAGATTCAAGTGAAGAATGTGAGTAGACTGTGCCATGCAAAACCCATTGTAACTGTAAATGGGAGGTTTCCAGGGCCAACTATCTATGCTAGGGAAGGAGATCAAGTGCTTGTCAACGTTACCAACCATGCACAATACAACATGTCGATTCATTGGTAGCTGAATTTCATAAATCGATTAAATACATATAGGTGAAGTTTTTAACACTAGAAAATACATGTTTTTCTCTAACAATCGTATATATGCTTGTTGTAGGCATGGACTTAAACAATATCGTAATGGTTGGGCGGATGGACCGGCTTACATCACACAGTGTCCGATACAGACCGGAAACAGCTATACTTATGAATTCAACGTTACTGGGCAAAGAGGAACACTATGGTGGCATGCACACATTTTCTGGCTGAGGGCCACTGTCTATGGGGCAATAGTAATTATGCCTAAACTTGGAACACCATTTCCTTTCCCACAACCAGCTAGAGAATTCGAAATTGTCTTGGGTAAGTATTATAAAGATTCGTTTTTTTTAAAAAAAAAAGTATTATAAAAGATTCATCGGATGAAATAAGAAGTATGAAAGTTGATGTACTAATTGTTTGTGCATGCAATAGGTGAATGGTGGAACAATGATGTGGAAGAGATTGAAAAGCAAGGAAACAAAATGGGGTTGCCACCAAATATGTCAGATGCACATACAATCAATGGAAAACCAGGACCGCTATTTCCTTGTTCTGAGAAGCGTAAGTAAAATTAGTTCGAGCACAATTTTAAATAGACTATGCTATACTGTAGATCTAATTAACGGGCTGAATACAATTTGTACAAATGCAAAATATGTAATTATATTTACAAGAGAATGAAATCTTTGTTTGAAGTTCAATTAATTTGCTTCAATTTTTCAGACACGTTTGCAATGGAGGTAGAACAAGGGAAGACATACCTCCTGAGAATCATCAACGCTGCCCTTAACGACGAACTTTTCTTTGCCATTGCGGGTCACAACATGACAGTAGTGGAGGTTGATGCTGTTTATACAAAACCATTCACCACTCAGGCTATACTAATTGCTCCTGGTCAAACCACAAATGTTCTGGTTCATGCCAACCAAGTTGCCGGTAGGTACTTCGTGGCCACCAAGGCTTTTATGGATGCCCCAATTCAAGTGGACAACAAAACTGCTACAGCTATACTTCAATACAAAGACATCCCAAACACTGTCCTACCCATCCTTCCACAGTTGCCAGCTAGCAATGACACAGGTTTTGCTTTGAGTTACAACAAAAAGATCAGAAGCTTGAACTCTGCTAAGTACCCTGCTAATGTTCCTCTCAAAGTTGATAGAAACCTCTTTTACACTATAGGTTTAGGCAAGAATTCTTGCCCCACATGCCTCAATGGAACCAGGTTTCTTGCTTCCATAAACAATGTATCTTTTGTGATGCCTCAAATTGCGCTTCTTCAAGCTCACTACTTCAACATCAAGGGTGTTTTCAGAGCTGATTTTCCTGACCGCCCACCAATTCCTTTCAACTATACCGGTGCGCCATTAACCGCCAATCTTGCCTCTTTGACAGGCACGAGAGTAAACAAGATTGCCTTCAACTCTACTGTTGAGCTAGTGTTGCAGGATACTAATCTCCTAACAGTTGAATCACATCCATTCCATCTTCATGGATATAACTTTTTCGTTGTTGGAAGTGGTATTGGTAATTTTGATCCTGCTAAAGACCCAGCCAAATACAACTTGGTAGATCCTATTGAAAGGAACACAGTTGGGGTTCCTACAGGTGGTTGGACTGCAATTCGCTTCCAGGCAGATAATCCAGGTATGTCTGAAGTTGTCCTAAGCTTCTATAATATTTAACTTTTATGGTCACGACATGATGTTTTTGTATATACAATTGCACAGGTGTTTGGTTCATGCATTGTCATTTGGAGCTGCACACTGGTTGGGGGTTGAAAACAGCTTTCCTTGTTGAAAATGGACCAAACCAAGGTCAATCGGTTCTGCCACCACCTAAGGACCTTCCTTCATGCTAG
Protein sequence

>MS.gene64676.t1

MASLGSFMSALNFLLFLFVGLISSSEAAIKKYQFDIQVKNVSRLCHAKPIVTVNGRFPGPTIYAREGDQVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIQTGNSYTYEFNVTGQRGTLWWHAHIFWLRATVYGAIVIMPKLGTPFPFPQPAREFEIVLGEWWNNDVEEIEKQGNKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVEQGKTYLLRIINAALNDELFFAIAGHNMTVVEVDAVYTKPFTTQAILIAPGQTTNVLVHANQVAGRYFVATKAFMDAPIQVDNKTATAILQYKDIPNTVLPILPQLPASNDTGFALSYNKKIRSLNSAKYPANVPLKVDRNLFYTIGLGKNSCPTCLNGTRFLASINNVSFVMPQIALLQAHYFNIKGVFRADFPDRPPIPFNYTGAPLTANLASLTGTRVNKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPAKDPAKYNLVDPIERNTVGVPTGGWTAIRFQADNPGVWFMHCHLELHTGWGLKTAFLVENGPNQGQSVLPPPKDLPSC