AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64752

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64752.t1 MTR_5g021760 99.729 369 1 0 1 369 1 369 0.0 768
MS.gene64752.t1 MTR_5g021770 98.916 369 4 0 1 369 1 369 0.0 763
MS.gene64752.t1 MTR_4g120030 25.000 336 198 12 23 344 110 405 5.50e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64752.t1 AT5G66280 85.754 358 49 2 13 369 5 361 0.0 650
MS.gene64752.t1 AT3G51160 85.511 352 50 1 18 369 23 373 0.0 647
MS.gene64752.t1 AT2G47650 24.490 343 202 13 23 346 118 422 1.46e-11 65.9
MS.gene64752.t1 AT3G62830 23.964 338 202 12 26 346 121 420 4.27e-11 64.3
MS.gene64752.t1 AT3G62830 23.964 338 202 12 26 346 121 420 4.27e-11 64.3
MS.gene64752.t1 AT2G47650 25.788 349 196 16 23 346 118 428 5.20e-11 64.3

Find 91 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAAGTTGATAATCTTAA+AGG 0.194040 5.2:-12969651 MS.gene64752:CDS
AGTTTGATGAACGGCGAATT+AGG 0.266526 5.2:+12970855 None:intergenic
CTTCAGAGTAAGTTGTTTCT+TGG 0.283233 5.2:-12969879 MS.gene64752:CDS
AGTAAAGCTAAGAAAGTTCT+TGG 0.327387 5.2:-12969621 MS.gene64752:CDS
CGTTTGTTGTTGACGGTGTT+GGG 0.336432 5.2:+12970987 None:intergenic
CCTAAGCGCGTCGAGAGATT+GGG 0.344870 5.2:-12969853 MS.gene64752:CDS
TTGGTTATGTTGGATTGAAT+TGG 0.372375 5.2:-12969713 MS.gene64752:CDS
ACCTAAGCGCGTCGAGAGAT+TGG 0.374515 5.2:-12969854 MS.gene64752:CDS
GCTGGATCTTCCGAAATGTT+TGG 0.393610 5.2:-12970545 MS.gene64752:CDS
CCCAATCTCTCGACGCGCTT+AGG 0.394133 5.2:+12969853 None:intergenic
GTACCGAATGTGAGATCTTC+CGG 0.395586 5.2:+12970574 None:intergenic
TGGAGTTGATCCAAACATTT+CGG 0.395979 5.2:+12970535 None:intergenic
GCGAGATTGTAAACTTCATC+AGG 0.399238 5.2:+12970707 None:intergenic
ACTACATCGGCAGTGTAATC+AGG 0.400097 5.2:+12970650 None:intergenic
GTACCAATGCGCAGCGACTT+TGG 0.414772 5.2:+12970460 None:intergenic
GAAGTTGCATTTGGTTATGT+TGG 0.417505 5.2:-12969723 MS.gene64752:CDS
ACGCTTCCTCCCTCCGTCGC+TGG 0.423134 5.2:-12970745 MS.gene64752:CDS
GTGAATTACCGTGAAGCATA+TGG 0.425833 5.2:-12970008 MS.gene64752:CDS
TCGAGAGATTGGGGATTTGC+TGG 0.434375 5.2:-12969843 MS.gene64752:CDS
AAACGACTCCGTTTCATCCT+CGG 0.435536 5.2:-12970499 MS.gene64752:CDS
AAGCTAAGAAAGTTCTTGGT+TGG 0.448425 5.2:-12969617 MS.gene64752:CDS
GTCGTTTCAGACTGCGGCGG+TGG 0.449259 5.2:+12970515 None:intergenic
CCGTTTGTTGTTGACGGTGT+TGG 0.453323 5.2:+12970986 None:intergenic
GGAGGAAGCGTCGGAGAGAT+CGG 0.468506 5.2:+12970757 None:intergenic
CCGTTAGGTATGATCCGTCT+TGG 0.470101 5.2:+12970912 None:intergenic
TGATGTTGAGATGGCTAAGA+AGG 0.472951 5.2:-12969547 MS.gene64752:CDS
CCTCCAAAGTCGCTGCGCAT+TGG 0.478635 5.2:-12970463 MS.gene64752:intron
GAGAAAGTGCTTGTTGATGC+TGG 0.479756 5.2:-12969525 MS.gene64752:CDS
CACATTCGGTACTATCAAGC+TGG 0.485404 5.2:-12970563 MS.gene64752:CDS
AGTTCTTGGTTGGAAACCTA+AGG 0.486640 5.2:-12969607 MS.gene64752:CDS
GAGGAGAGAATTTCGTTACA+AGG 0.489476 5.2:-12969938 MS.gene64752:CDS
GATGTGGTTGATGCTACAAC+AGG 0.492498 5.2:-12969805 MS.gene64752:CDS
GTGTCGCCGTTTGTTGTTGA+CGG 0.494472 5.2:+12970980 None:intergenic
TGTTGAGGAGGAATTCCGTT+AGG 0.497000 5.2:+12970897 None:intergenic
TGAAGAGCTTGTTAGAATGA+TGG 0.497175 5.2:-12969577 MS.gene64752:CDS
AGGAAGATTACTAGAGCTGT+TGG 0.503091 5.2:-12969918 MS.gene64752:CDS
AGCTCTTCAAAACTAACCTT+AGG 0.505928 5.2:+12969591 None:intergenic
CCAACACCGTCAACAACAAA+CGG 0.512361 5.2:-12970986 MS.gene64752:CDS
AATGCGACTTTACGCGGTGG+AGG 0.517057 5.2:+12970953 None:intergenic
GCATTAATCACTGGAATCAC+AGG 0.524022 5.2:-12970935 MS.gene64752:CDS
TTAAGATTATCAACTTCAGT+AGG 0.526518 5.2:+12969654 None:intergenic
GCGACTTTGGAGGCGGCGTA+AGG 0.533507 5.2:+12970473 None:intergenic
ATGCGCAGCGACTTTGGAGG+CGG 0.536171 5.2:+12970466 None:intergenic
AACAAAGGCTACTCCGTTCA+CGG 0.537231 5.2:-12970878 MS.gene64752:CDS
TAAGGAGACCGAGGATGAAA+CGG 0.539744 5.2:+12970491 None:intergenic
CGATCTCATATCGACGCTAC+CGG 0.547579 5.2:-12970593 MS.gene64752:CDS
CTGTTGGAAGAATCAAGATC+GGG 0.549995 5.2:-12969902 MS.gene64752:CDS
GTGATTAATGCGACTTTACG+CGG 0.554387 5.2:+12970947 None:intergenic
CGTAAAGTCGCATTAATCAC+TGG 0.556600 5.2:-12970944 MS.gene64752:CDS
CGGAGTAGCCTTTGTTGAGG+AGG 0.561578 5.2:+12970885 None:intergenic
GTTGATGCTACAACAGGAAA+AGG 0.563273 5.2:-12969799 MS.gene64752:CDS
TTCAAGAAGACGGAGAGCAC+CGG 0.564732 5.2:+12970622 None:intergenic
CTAAGCGCGTCGAGAGATTG+GGG 0.565981 5.2:-12969852 MS.gene64752:CDS
ATCGGACAGCTTCAAGAAGA+CGG 0.566546 5.2:+12970612 None:intergenic
CCAATGCGCAGCGACTTTGG+AGG 0.569706 5.2:+12970463 None:intergenic
CTACCGGAAGATCTCACATT+CGG 0.571219 5.2:-12970577 MS.gene64752:CDS
GCTGTTGGAAGAATCAAGAT+CGG 0.576069 5.2:-12969903 MS.gene64752:CDS
GATTATCAACTTCAGTAGGA+CGG 0.577125 5.2:+12969658 None:intergenic
GACTTTACGCGGTGGAGGAG+TGG 0.582219 5.2:+12970958 None:intergenic
GTCGAGCCAGCGACGGAGGG+AGG 0.584651 5.2:+12970739 None:intergenic
GCGACGGAGGGAGGAAGCGT+CGG 0.584974 5.2:+12970748 None:intergenic
TTGTGTCGAGCCAGCGACGG+AGG 0.585658 5.2:+12970735 None:intergenic
GGTTGATAATGATGTTGAGA+TGG 0.603211 5.2:-12969556 MS.gene64752:CDS
TGTGTCGAGCCAGCGACGGA+GGG 0.608791 5.2:+12970736 None:intergenic
GTGATTATGTTGAAGCGATG+TGG 0.617088 5.2:-12969821 MS.gene64752:CDS
TGAGCTTTGTGAGCGTTGTG+TGG 0.617112 5.2:+12970797 None:intergenic
CGGTAGCGTCGATATGAGAT+CGG 0.622385 5.2:+12970594 None:intergenic
GGCGACAGAGGATTCGCATA+CGG 0.622538 5.2:-12969760 MS.gene64752:CDS
GTGTGTTGAAGTTTGATGAA+CGG 0.622841 5.2:+12970846 None:intergenic
AGAAAGTGCTTGTTGATGCT+GGG 0.623449 5.2:-12969524 MS.gene64752:CDS
GTTTGTTGTTGACGGTGTTG+GGG 0.624826 5.2:+12970988 None:intergenic
GAACGGAGTAGCCTTTGTTG+AGG 0.625343 5.2:+12970882 None:intergenic
GAATTGTGTCGAGCCAGCGA+CGG 0.625807 5.2:+12970732 None:intergenic
ACGGAATTCCTCCTCAACAA+AGG 0.626654 5.2:-12970893 MS.gene64752:CDS
ACGGCGAATTAGGCCGTGAA+CGG 0.632242 5.2:+12970865 None:intergenic
CGCTGCACAGTCTCACGTCG+CGG 0.634519 5.2:-12970687 MS.gene64752:CDS
ACTGGAATCACAGGCCAAGA+CGG 0.636866 5.2:-12970926 MS.gene64752:CDS
TTATGTTGGATTGAATTGGA+AGG 0.637434 5.2:-12969709 MS.gene64752:CDS
AACGGAGTCGTTTCAGACTG+CGG 0.644350 5.2:+12970509 None:intergenic
ACTGCCGATGTAGTTGCTAC+CGG 0.645249 5.2:-12970641 MS.gene64752:CDS
CGAGATTGTAAACTTCATCA+GGG 0.657924 5.2:+12970708 None:intergenic
CCAAGACGGATCATACCTAA+CGG 0.664395 5.2:-12970912 MS.gene64752:CDS
GACAGAGGATTCGCATACGG+TGG 0.672210 5.2:-12969757 MS.gene64752:CDS
AATCATGAGTCACCACGTAG+AGG 0.675384 5.2:-12969957 MS.gene64752:CDS
ACGAAATTCTCTCCTCTACG+TGG 0.681620 5.2:+12969945 None:intergenic
TGATTATGTTGTGGCGACAG+AGG 0.688973 5.2:-12969772 MS.gene64752:CDS
GAGGCGGCGTAAGGAGACCG+AGG 0.699155 5.2:+12970482 None:intergenic
AGCACCGGTAGCAACTACAT+CGG 0.710932 5.2:+12970637 None:intergenic
ATTAATGCGACTTTACGCGG+TGG 0.711429 5.2:+12970950 None:intergenic
AAAGGCTGATGATTATGTTG+TGG 0.716548 5.2:-12969781 MS.gene64752:CDS
GGAGTCGTTTCAGACTGCGG+CGG 0.740688 5.2:+12970512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACATTGATACTGATA+TGG - chr5.2:12970385-12970404 MS.gene64752:intron 20.0%
!! AATGAAATTAACAATCGATA+CGG - chr5.2:12970117-12970136 MS.gene64752:intron 20.0%
!!! AAGTTAGTTGATGTTATTTT+TGG + chr5.2:12970339-12970358 None:intergenic 20.0%
!!! TGATATGTAACTAACTTTTA+TGG - chr5.2:12970460-12970479 MS.gene64752:intron 20.0%
! TTAAGATTATCAACTTCAGT+AGG + chr5.2:12970856-12970875 None:intergenic 25.0%
!! CTAACTTTTACATCTCAAAT+TGG - chr5.2:12970352-12970371 MS.gene64752:intron 25.0%
!! CTAACTTTTACATCTCTAAT+AGG - chr5.2:12970144-12970163 MS.gene64752:intron 25.0%
!! CTAACTTTTATGGATCTAAT+AGG - chr5.2:12970470-12970489 MS.gene64752:CDS 25.0%
!! TATGGAATTTTTGCTTGTAA+CGG - chr5.2:12970517-12970536 MS.gene64752:CDS 25.0%
!!! ACTGAAGTTGATAATCTTAA+AGG - chr5.2:12970856-12970875 MS.gene64752:CDS 25.0%
AGTAAAGCTAAGAAAGTTCT+TGG - chr5.2:12970886-12970905 MS.gene64752:CDS 30.0%
CAAAAATTCCATATGCTTCA+CGG + chr5.2:12970510-12970529 None:intergenic 30.0%
TTATGTTGGATTGAATTGGA+AGG - chr5.2:12970798-12970817 MS.gene64752:CDS 30.0%
TTGGTTATGTTGGATTGAAT+TGG - chr5.2:12970794-12970813 MS.gene64752:CDS 30.0%
! CTAACTTTTACATCTCGAAT+AGG - chr5.2:12970309-12970328 MS.gene64752:intron 30.0%
AAAGGCTGATGATTATGTTG+TGG - chr5.2:12970726-12970745 MS.gene64752:CDS 35.0%
AAGCTAAGAAAGTTCTTGGT+TGG - chr5.2:12970890-12970909 MS.gene64752:CDS 35.0%
AGCTCTTCAAAACTAACCTT+AGG + chr5.2:12970919-12970938 None:intergenic 35.0%
CGAGATTGTAAACTTCATCA+GGG + chr5.2:12969802-12969821 None:intergenic 35.0%
GAAGTTGCATTTGGTTATGT+TGG - chr5.2:12970784-12970803 MS.gene64752:CDS 35.0%
GATTATCAACTTCAGTAGGA+CGG + chr5.2:12970852-12970871 None:intergenic 35.0%
GTGTGTTGAAGTTTGATGAA+CGG + chr5.2:12969664-12969683 None:intergenic 35.0%
! TGGAGTTGATCCAAACATTT+CGG + chr5.2:12969975-12969994 None:intergenic 35.0%
!! CTTCAGAGTAAGTTGTTTCT+TGG - chr5.2:12970628-12970647 MS.gene64752:CDS 35.0%
!! GAGTTTTTGGAAGTTGCATT+TGG - chr5.2:12970775-12970794 MS.gene64752:CDS 35.0%
!! GGTTGATAATGATGTTGAGA+TGG - chr5.2:12970951-12970970 MS.gene64752:CDS 35.0%
!! TGAAGAGCTTGTTAGAATGA+TGG - chr5.2:12970930-12970949 MS.gene64752:CDS 35.0%
AGGAAGATTACTAGAGCTGT+TGG - chr5.2:12970589-12970608 MS.gene64752:CDS 40.0%
AGTTCTTGGTTGGAAACCTA+AGG - chr5.2:12970900-12970919 MS.gene64752:CDS 40.0%
AGTTTGATGAACGGCGAATT+AGG + chr5.2:12969655-12969674 None:intergenic 40.0%
CGTAAAGTCGCATTAATCAC+TGG - chr5.2:12969563-12969582 MS.gene64752:CDS 40.0%
CTGTTGGAAGAATCAAGATC+GGG - chr5.2:12970605-12970624 MS.gene64752:CDS 40.0%
GAGGAGAGAATTTCGTTACA+AGG - chr5.2:12970569-12970588 MS.gene64752:CDS 40.0%
GCATTAATCACTGGAATCAC+AGG - chr5.2:12969572-12969591 MS.gene64752:CDS 40.0%
GCGAGATTGTAAACTTCATC+AGG + chr5.2:12969803-12969822 None:intergenic 40.0%
GCTGTTGGAAGAATCAAGAT+CGG - chr5.2:12970604-12970623 MS.gene64752:CDS 40.0%
GTGAATTACCGTGAAGCATA+TGG - chr5.2:12970499-12970518 MS.gene64752:CDS 40.0%
GTGATTAATGCGACTTTACG+CGG + chr5.2:12969563-12969582 None:intergenic 40.0%
GTGATTATGTTGAAGCGATG+TGG - chr5.2:12970686-12970705 MS.gene64752:CDS 40.0%
GTTGATGCTACAACAGGAAA+AGG - chr5.2:12970708-12970727 MS.gene64752:CDS 40.0%
TGATGTTGAGATGGCTAAGA+AGG - chr5.2:12970960-12970979 MS.gene64752:CDS 40.0%
!! AGAAAGTGCTTGTTGATGCT+GGG - chr5.2:12970983-12971002 MS.gene64752:CDS 40.0%
AAACGACTCCGTTTCATCCT+CGG - chr5.2:12970008-12970027 MS.gene64752:CDS 45.0%
AACAAAGGCTACTCCGTTCA+CGG - chr5.2:12969629-12969648 MS.gene64752:CDS 45.0%
AATCATGAGTCACCACGTAG+AGG - chr5.2:12970550-12970569 MS.gene64752:CDS 45.0%
ACGAAATTCTCTCCTCTACG+TGG + chr5.2:12970565-12970584 None:intergenic 45.0%
ACGGAATTCCTCCTCAACAA+AGG - chr5.2:12969614-12969633 MS.gene64752:CDS 45.0%
ACTACATCGGCAGTGTAATC+AGG + chr5.2:12969860-12969879 None:intergenic 45.0%
ATCGGACAGCTTCAAGAAGA+CGG + chr5.2:12969898-12969917 None:intergenic 45.0%
ATTAATGCGACTTTACGCGG+TGG + chr5.2:12969560-12969579 None:intergenic 45.0%
CACATTCGGTACTATCAAGC+TGG - chr5.2:12969944-12969963 MS.gene64752:CDS 45.0%
CCAACACCGTCAACAACAAA+CGG - chr5.2:12969521-12969540 MS.gene64752:CDS 45.0%
CCAAGACGGATCATACCTAA+CGG - chr5.2:12969595-12969614 MS.gene64752:CDS 45.0%
CTACCGGAAGATCTCACATT+CGG - chr5.2:12969930-12969949 MS.gene64752:CDS 45.0%
GCTGGATCTTCCGAAATGTT+TGG - chr5.2:12969962-12969981 MS.gene64752:CDS 45.0%
GTACCGAATGTGAGATCTTC+CGG + chr5.2:12969936-12969955 None:intergenic 45.0%
TAAGGAGACCGAGGATGAAA+CGG + chr5.2:12970019-12970038 None:intergenic 45.0%
TGATTATGTTGTGGCGACAG+AGG - chr5.2:12970735-12970754 MS.gene64752:CDS 45.0%
TGTTGAGGAGGAATTCCGTT+AGG + chr5.2:12969613-12969632 None:intergenic 45.0%
! GATGTGGTTGATGCTACAAC+AGG - chr5.2:12970702-12970721 MS.gene64752:CDS 45.0%
! GCATACGGTGGAAGAGTTTT+TGG - chr5.2:12970762-12970781 MS.gene64752:CDS 45.0%
!! CGTTTGTTGTTGACGGTGTT+GGG + chr5.2:12969523-12969542 None:intergenic 45.0%
!! GAGAAAGTGCTTGTTGATGC+TGG - chr5.2:12970982-12971001 MS.gene64752:CDS 45.0%
!! GTTTGTTGTTGACGGTGTTG+GGG + chr5.2:12969522-12969541 None:intergenic 45.0%
AACGGAGTCGTTTCAGACTG+CGG + chr5.2:12970001-12970020 None:intergenic 50.0%
ACTGCCGATGTAGTTGCTAC+CGG - chr5.2:12969866-12969885 MS.gene64752:CDS 50.0%
ACTGGAATCACAGGCCAAGA+CGG - chr5.2:12969581-12969600 MS.gene64752:CDS 50.0%
CCGTTAGGTATGATCCGTCT+TGG + chr5.2:12969598-12969617 None:intergenic 50.0%
CGATCTCATATCGACGCTAC+CGG - chr5.2:12969914-12969933 MS.gene64752:CDS 50.0%
GAACGGAGTAGCCTTTGTTG+AGG + chr5.2:12969628-12969647 None:intergenic 50.0%
TCGAGAGATTGGGGATTTGC+TGG - chr5.2:12970664-12970683 MS.gene64752:CDS 50.0%
! TGAGCTTTGTGAGCGTTGTG+TGG + chr5.2:12969713-12969732 None:intergenic 50.0%
! TTCAAGAAGACGGAGAGCAC+CGG + chr5.2:12969888-12969907 None:intergenic 50.0%
!! AGCACCGGTAGCAACTACAT+CGG + chr5.2:12969873-12969892 None:intergenic 50.0%
!! CCGTTTGTTGTTGACGGTGT+TGG + chr5.2:12969524-12969543 None:intergenic 50.0%
!! CGGTAGCGTCGATATGAGAT+CGG + chr5.2:12969916-12969935 None:intergenic 50.0%
!! GTGTCGCCGTTTGTTGTTGA+CGG + chr5.2:12969530-12969549 None:intergenic 50.0%
AATGCGACTTTACGCGGTGG+AGG + chr5.2:12969557-12969576 None:intergenic 55.0%
ACCTAAGCGCGTCGAGAGAT+TGG - chr5.2:12970653-12970672 MS.gene64752:CDS 55.0%
ACGGCGAATTAGGCCGTGAA+CGG + chr5.2:12969645-12969664 None:intergenic 55.0%
CCTAAGCGCGTCGAGAGATT+GGG - chr5.2:12970654-12970673 MS.gene64752:CDS 55.0%
CGGAGTAGCCTTTGTTGAGG+AGG + chr5.2:12969625-12969644 None:intergenic 55.0%
CTAAGCGCGTCGAGAGATTG+GGG - chr5.2:12970655-12970674 MS.gene64752:CDS 55.0%
GAATTGTGTCGAGCCAGCGA+CGG + chr5.2:12969778-12969797 None:intergenic 55.0%
GACAGAGGATTCGCATACGG+TGG - chr5.2:12970750-12970769 MS.gene64752:CDS 55.0%
GGCGACAGAGGATTCGCATA+CGG - chr5.2:12970747-12970766 MS.gene64752:CDS 55.0%
GTACCAATGCGCAGCGACTT+TGG + chr5.2:12970050-12970069 None:intergenic 55.0%
CCAATGCGCAGCGACTTTGG+AGG + chr5.2:12970047-12970066 None:intergenic 60.0%
CCCAATCTCTCGACGCGCTT+AGG + chr5.2:12970657-12970676 None:intergenic 60.0%
CCTCCAAAGTCGCTGCGCAT+TGG - chr5.2:12970044-12970063 MS.gene64752:intron 60.0%
GACTTTACGCGGTGGAGGAG+TGG + chr5.2:12969552-12969571 None:intergenic 60.0%
GGAGTCGTTTCAGACTGCGG+CGG + chr5.2:12969998-12970017 None:intergenic 60.0%
! ATGCGCAGCGACTTTGGAGG+CGG + chr5.2:12970044-12970063 None:intergenic 60.0%
!! GGAGGAAGCGTCGGAGAGAT+CGG + chr5.2:12969753-12969772 None:intergenic 60.0%
CGCTGCACAGTCTCACGTCG+CGG - chr5.2:12969820-12969839 MS.gene64752:CDS 65.0%
GTCGTTTCAGACTGCGGCGG+TGG + chr5.2:12969995-12970014 None:intergenic 65.0%
TGTGTCGAGCCAGCGACGGA+GGG + chr5.2:12969774-12969793 None:intergenic 65.0%
TTGTGTCGAGCCAGCGACGG+AGG + chr5.2:12969775-12969794 None:intergenic 65.0%
! GCGACTTTGGAGGCGGCGTA+AGG + chr5.2:12970037-12970056 None:intergenic 65.0%
ACGCTTCCTCCCTCCGTCGC+TGG - chr5.2:12969762-12969781 MS.gene64752:CDS 70.0%
GAGGCGGCGTAAGGAGACCG+AGG + chr5.2:12970028-12970047 None:intergenic 70.0%
! GCGACGGAGGGAGGAAGCGT+CGG + chr5.2:12969762-12969781 None:intergenic 70.0%
GTCGAGCCAGCGACGGAGGG+AGG + chr5.2:12969771-12969790 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 12969497 12971032 12969497 ID=MS.gene64752
chr5.2 mRNA 12969497 12971032 12969497 ID=MS.gene64752.t1;Parent=MS.gene64752
chr5.2 exon 12970464 12971032 12970464 ID=MS.gene64752.t1.exon1;Parent=MS.gene64752.t1
chr5.2 CDS 12970464 12971032 12970464 ID=cds.MS.gene64752.t1;Parent=MS.gene64752.t1
chr5.2 exon 12969497 12970037 12969497 ID=MS.gene64752.t1.exon2;Parent=MS.gene64752.t1
chr5.2 CDS 12969497 12970037 12969497 ID=cds.MS.gene64752.t1;Parent=MS.gene64752.t1
Gene Sequence

>MS.gene64752

ATGGCAGATTCATCATCAAAAACCCCAACACCGTCAACAACAAACGGCGACACCACTCCTCCACCGCGTAAAGTCGCATTAATCACTGGAATCACAGGCCAAGACGGATCATACCTAACGGAATTCCTCCTCAACAAAGGCTACTCCGTTCACGGCCTAATTCGCCGTTCATCAAACTTCAACACACAACGAATTGATCACATCTATGTCGATCCACACAACGCTCACAAAGCTCACATGAAGCTTCACTACGCCGATCTCTCCGACGCTTCCTCCCTCCGTCGCTGGCTCGACACAATTCTCCCTGATGAAGTTTACAATCTCGCTGCACAGTCTCACGTCGCGGTTTCGTTTGAGATTCCTGATTACACTGCCGATGTAGTTGCTACCGGTGCTCTCCGTCTTCTTGAAGCTGTCCGATCTCATATCGACGCTACCGGAAGATCTCACATTCGGTACTATCAAGCTGGATCTTCCGAAATGTTTGGATCAACTCCACCGCCGCAGTCTGAAACGACTCCGTTTCATCCTCGGTCTCCTTACGCCGCCTCCAAAGTCGCTGCGCATTGGTACTATTGCAATTCTTGATAGAAATCATAAATATGATAAATGCATGAATTAATGAAATTAACAATCGATACGGATAACTAACTTTTACATCTCTAATAGGTACGCTGTGAAAATAATACTGATATTTCTGTAACTAACTTTTACATCTATAATACTGTGAATAACAGCGATACTGATATGTAGTAACTAACTTTTACATCTTGAATAAGTACATTGTGAAAATAACACTGATATCTGCGTAACTAACTTTTACATCTCGAATAGGTACACCAAAAATAACATCAACTAACTTTTACATCTCAAATTGGTACATTGTGAAAATAACATTGATACTGATATGGAACTAGTTTTTTTACATATCTAATAGATACATTGTGAAAATAACACTGATGCTGATATGTAACTAACTTTTATGGATCTAATAGGTACACTGTGAATTACCGTGAAGCATATGGAATTTTTGCTTGTAACGGAATTCTCTTCAATCATGAGTCACCACGTAGAGGAGAGAATTTCGTTACAAGGAAGATTACTAGAGCTGTTGGAAGAATCAAGATCGGGCTTCAGAGTAAGTTGTTTCTTGGAAACCTAAGCGCGTCGAGAGATTGGGGATTTGCTGGTGATTATGTTGAAGCGATGTGGTTGATGCTACAACAGGAAAAGGCTGATGATTATGTTGTGGCGACAGAGGATTCGCATACGGTGGAAGAGTTTTTGGAAGTTGCATTTGGTTATGTTGGATTGAATTGGAAGGATCATGTTGTGATTGATAAGAGATACTTCCGTCCTACTGAAGTTGATAATCTTAAAGGCGATGCTAGTAAAGCTAAGAAAGTTCTTGGTTGGAAACCTAAGGTTAGTTTTGAAGAGCTTGTTAGAATGATGGTTGATAATGATGTTGAGATGGCTAAGAAGGAGAAAGTGCTTGTTGATGCTGGGTACATTGATGCTCAACAACAACCTTGA
Protein sequence

>MS.gene64752.t1

MADSSSKTPTPSTTNGDTTPPPRKVALITGITGQDGSYLTEFLLNKGYSVHGLIRRSSNFNTQRIDHIYVDPHNAHKAHMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIDATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKVAAHWYTVNYREAYGIFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLSASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPTEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDAQQQP