AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64944

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64944.t1 MTR_5g098420 98.091 419 8 0 2 420 3 421 0.0 837
MS.gene64944.t1 MTR_3g460780 65.372 309 105 2 33 339 30 338 3.67e-135 394
MS.gene64944.t1 MTR_7g075453 39.423 416 215 10 27 420 16 416 3.81e-81 256
MS.gene64944.t1 MTR_8g069000 90.164 61 6 0 1 61 1 61 1.06e-30 113
MS.gene64944.t1 MTR_1g009950 36.813 182 104 4 18 190 7 186 2.98e-27 109
MS.gene64944.t1 MTR_2g437700 27.378 347 232 11 8 337 1 344 1.30e-23 102
MS.gene64944.t1 MTR_1g009940 35.374 147 92 2 34 179 25 169 3.36e-22 96.3
MS.gene64944.t1 MTR_1g009910 34.694 147 93 2 34 179 25 169 1.49e-21 94.4
MS.gene64944.t1 MTR_3g108760 36.129 155 92 4 34 187 25 173 2.74e-19 87.4
MS.gene64944.t1 MTR_1g009920 35.345 116 73 1 34 149 25 138 1.19e-18 84.7
MS.gene64944.t1 MTR_2g017970 30.603 232 123 8 195 416 68 271 5.78e-17 81.3
MS.gene64944.t1 MTR_2g090765 31.984 247 136 9 183 419 25 249 9.31e-17 79.7
MS.gene64944.t1 MTR_4g059840 31.553 206 126 7 176 374 56 253 1.21e-16 80.5
MS.gene64944.t1 MTR_4g059790 31.373 204 125 7 178 374 58 253 1.52e-16 80.1
MS.gene64944.t1 MTR_2g017960 29.237 236 129 8 195 420 68 275 6.22e-15 75.1
MS.gene64944.t1 MTR_4g053380 32.124 193 114 7 185 363 63 252 1.25e-14 74.3
MS.gene64944.t1 MTR_4g059720 29.193 161 105 3 184 337 31 189 1.73e-13 70.5
MS.gene64944.t1 MTR_8g087460 27.969 261 153 10 178 420 73 316 6.34e-12 66.6
MS.gene64944.t1 MTR_8g087470 28.016 257 146 9 187 420 76 316 1.42e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64944.t1 AT4G12730 58.647 399 137 5 1 396 4 377 1.80e-158 453
MS.gene64944.t1 AT5G55730 56.906 362 140 4 33 379 25 385 1.12e-131 385
MS.gene64944.t1 AT5G55730 56.906 362 140 4 33 379 25 385 1.12e-131 385
MS.gene64944.t1 AT2G45470 43.112 392 201 8 16 391 9 394 2.73e-90 280
MS.gene64944.t1 AT3G60900 41.422 408 201 10 8 391 7 400 7.68e-87 271
MS.gene64944.t1 AT3G12660 43.421 152 83 2 29 179 20 169 4.31e-31 120
MS.gene64944.t1 AT3G46550 29.480 346 208 12 34 350 30 368 1.93e-27 113
MS.gene64944.t1 AT2G24450 37.427 171 96 5 10 179 9 169 6.23e-25 103
MS.gene64944.t1 AT4G31370 35.135 148 92 3 33 179 25 169 3.19e-21 93.2
MS.gene64944.t1 AT5G03170 29.474 190 121 6 179 360 19 203 4.64e-17 80.9
MS.gene64944.t1 AT2G20520 34.634 205 117 7 180 374 23 220 4.33e-16 77.8
MS.gene64944.t1 AT1G03870 31.016 187 112 7 194 367 38 220 1.30e-12 67.8
MS.gene64944.t1 AT5G60490 31.034 116 74 3 226 337 74 187 2.06e-11 64.3

Find 124 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTCTTTGCTGCTTT+TGG 0.147168 5.1:+79048112 None:intergenic
GGTGATTTGGTGGAGTTTCT+TGG 0.245142 5.1:+79048852 None:intergenic
GATGCCAAGAGAATTGTTTA+AGG 0.254991 5.1:-79048173 MS.gene64944:CDS
CAGTTTGTTTATTGGTGCTT+TGG 0.270880 5.1:-79047933 MS.gene64944:CDS
GATGATGAAAATGGAGTTAA+TGG 0.275353 5.1:-79047992 MS.gene64944:CDS
GTCAATATCACAAACCTAAA+AGG 0.277047 5.1:-79048763 MS.gene64944:CDS
AGAATTGTTTAAGGGAGTTA+AGG 0.283558 5.1:-79048164 MS.gene64944:CDS
TCTGCGTCGGCGGAGCTTAA+AGG 0.293364 5.1:+79048634 None:intergenic
ATCTGTAATGATTGGTATAC+TGG 0.301366 5.1:+79048376 None:intergenic
CTGGAACACCGTGGTATAAT+AGG 0.314783 5.1:+79048395 None:intergenic
TCAAGGGTTGAGATTCATTA+TGG 0.318794 5.1:-79047963 MS.gene64944:CDS
CCAAGTGACATTGATTTAAT+CGG 0.340784 5.1:-79048595 MS.gene64944:CDS
AAAGGTGGCAAAGTCGGTTT+TGG 0.345872 5.1:-79048745 MS.gene64944:CDS
ATCATATTTGTTATGGCCTT+CGG 0.360900 5.1:+79048315 None:intergenic
CAAGAAGAAGAAGGCGGCGC+CGG 0.364739 5.1:-79048089 MS.gene64944:CDS
CAGTGTTAACTTTGGTTTCA+AGG 0.373237 5.1:+79048260 None:intergenic
ATTTCAACATCTGTAATGAT+TGG 0.375565 5.1:+79048368 None:intergenic
GCGCGTGATGTTGTGGTTGC+CGG 0.375636 5.1:+79049077 None:intergenic
GTCGATGGCTAGGATGGTTA+TGG 0.377750 5.1:+79048969 None:intergenic
GGCGGCGCCGGCGGCGGATG+AGG 0.389395 5.1:-79048077 MS.gene64944:CDS
GGAGGTGGCGGCAGCGGCGA+TGG 0.390080 5.1:+79049098 None:intergenic
AAAGCTGCTGATGATGAAAA+TGG 0.396296 5.1:-79048001 MS.gene64944:CDS
ATGAAGACCGTCGTTGTCTT+CGG 0.397307 5.1:+79048720 None:intergenic
GGCGGTTCCAGCGGCGGATC+CGG 0.405430 5.1:+79048792 None:intergenic
CTGTGAAATCATATTTGTTA+TGG 0.408434 5.1:+79048308 None:intergenic
ATCGCCGCTGCCGCCACCTC+CGG 0.408440 5.1:-79049096 MS.gene64944:CDS
TTAAAGGATTACTGATTTGA+AGG 0.408846 5.1:+79048650 None:intergenic
GAAGAAGGCGGCGCCGGCGG+CGG 0.414846 5.1:-79048083 MS.gene64944:CDS
GTTAACACTGCAAATATTGT+TGG 0.417708 5.1:-79048247 MS.gene64944:CDS
GAAGAAGAAGGCGGCGCCGG+CGG 0.417754 5.1:-79048086 MS.gene64944:CDS
GGAGTTAATGGATTAAATCA+AGG 0.421979 5.1:-79047980 MS.gene64944:CDS
ATGCCAAGAGAATTGTTTAA+GGG 0.423949 5.1:-79048172 MS.gene64944:CDS
TGTAGTGTATAAGATAAGTA+AGG 0.425772 5.1:-79048200 MS.gene64944:CDS
ATTGTTTAAGGGAGTTAAGG+AGG 0.430839 5.1:-79048161 MS.gene64944:CDS
TCAGAATCTGCATCTGCATC+TGG 0.432705 5.1:+79048031 None:intergenic
CTTATCTTATACACTACAAA+AGG 0.441117 5.1:+79048205 None:intergenic
GTTTGTGATATTGACGTAAC+CGG 0.442226 5.1:+79048771 None:intergenic
CGCCGACGCAGAAGCGCCGA+CGG 0.447538 5.1:-79048623 MS.gene64944:CDS
GTTGCCGGAGGTGGCGGCAG+CGG 0.450353 5.1:+79049092 None:intergenic
AATATTTGCAGTGTTAACTT+TGG 0.452437 5.1:+79048252 None:intergenic
GTGTGGTACCGTCGGTGATT+TGG 0.461418 5.1:+79048839 None:intergenic
TCAACGGATTCTTTGAAAGT+AGG 0.465548 5.1:+79048511 None:intergenic
ACTCCCTTAAACAATTCTCT+TGG 0.467873 5.1:+79048169 None:intergenic
TGCCGTCGGCGCTTCTGCGT+CGG 0.476325 5.1:+79048621 None:intergenic
GGTGGCGGCAGCGGCGATGG+TGG 0.476691 5.1:+79049101 None:intergenic
GATGGAAAGGTAGTGGTTGA+AGG 0.482791 5.1:+79049026 None:intergenic
CCGATTAAATCAATGTCACT+TGG 0.484710 5.1:+79048595 None:intergenic
CAGCGGCGGATCCGGTAGCT+TGG 0.489876 5.1:+79048800 None:intergenic
GTTGTGGTTGCCGGAGGTGG+CGG 0.490801 5.1:+79049086 None:intergenic
CAAGCTACCGGATCCGCCGC+TGG 0.491705 5.1:-79048799 MS.gene64944:CDS
GGAGAGGTGTTTGTCTAGGA+GGG 0.492717 5.1:+79048930 None:intergenic
TCCTCCATGTTCCAAGCTAC+CGG 0.493888 5.1:-79048811 MS.gene64944:CDS
CTCATCGGCGAGGTGGGTGA+TGG 0.495826 5.1:+79049008 None:intergenic
GTAACAAATCTGCAAAAGAT+TGG 0.498004 5.1:+79048551 None:intergenic
CCGCTGACGGCGGTATCTGT+TGG 0.500494 5.1:+79048466 None:intergenic
CAACGGATTCTTTGAAAGTA+GGG 0.501623 5.1:+79048512 None:intergenic
GATGTTGTGGTTGCCGGAGG+TGG 0.513269 5.1:+79049083 None:intergenic
AACAGTTAAACCGCCGTCAA+CGG 0.515932 5.1:+79048495 None:intergenic
TGATGGAGAGGTGTTTGTCT+AGG 0.520466 5.1:+79048926 None:intergenic
TGGTTGAAGGTGGAGAAGCC+AGG 0.520492 5.1:+79049039 None:intergenic
AGGATTACTGATTTGAAGGA+CGG 0.524929 5.1:+79048654 None:intergenic
TCTGCATCCTCATCCGCCGC+CGG 0.525089 5.1:+79048070 None:intergenic
GGTGGGTGATGGAAAGGTAG+TGG 0.528798 5.1:+79049019 None:intergenic
GGCATTGTCGATGGCTAGGA+TGG 0.528895 5.1:+79048963 None:intergenic
TCTGCATCTGGTCCATCTGC+CGG 0.531869 5.1:+79048043 None:intergenic
GACGTAACCGGCGGTTCCAG+CGG 0.539035 5.1:+79048783 None:intergenic
TGGAGAGGTGTTTGTCTAGG+AGG 0.539087 5.1:+79048929 None:intergenic
CGTCGGCGCTTCTGCGTCGG+CGG 0.540634 5.1:+79048624 None:intergenic
CGGCGAGGTGGGTGATGGAA+AGG 0.540952 5.1:+79049013 None:intergenic
AACCTAAAAGGTGGCAAAGT+CGG 0.542701 5.1:-79048751 MS.gene64944:CDS
GAGTAAGAGCAAGAAGAAGA+AGG 0.550005 5.1:-79048098 MS.gene64944:CDS
ACTTTCAAAGAATCCGTTGA+CGG 0.551042 5.1:-79048508 MS.gene64944:CDS
GAGTTAATGGATTAAATCAA+GGG 0.551140 5.1:-79047979 MS.gene64944:CDS
GACGTATGGAAGTTCTTCTA+CGG 0.551640 5.1:+79048681 None:intergenic
TGGCGGCATTGTCGATGGCT+AGG 0.553261 5.1:+79048959 None:intergenic
GGATCCGCCGCTGGAACCGC+CGG 0.554442 5.1:-79048790 MS.gene64944:CDS
GTTGATCTCATCGGCGAGGT+GGG 0.557690 5.1:+79049002 None:intergenic
CATGTCTTAGTCGACTACTT+CGG 0.559079 5.1:-79048877 MS.gene64944:CDS
GATGCAGACTCACCGGCAGA+TGG 0.563432 5.1:-79048055 MS.gene64944:CDS
CGACTAAGACATGGAGGGAG+AGG 0.569245 5.1:+79048887 None:intergenic
AGACATGGCGGCATTGTCGA+TGG 0.569829 5.1:+79048954 None:intergenic
GGTTGATCTCATCGGCGAGG+TGG 0.572163 5.1:+79049001 None:intergenic
TGGTACCGTCGGTGATTTGG+TGG 0.574288 5.1:+79048842 None:intergenic
CTAGAATGCGCGTGATGTTG+TGG 0.578501 5.1:+79049070 None:intergenic
GGATGAGGATGCAGACTCAC+CGG 0.583422 5.1:-79048062 MS.gene64944:CDS
GATTTCACAGTGCAAAATGA+TGG 0.584777 5.1:-79048295 MS.gene64944:CDS
ATGTCACTTGGAGCTGCCGT+CGG 0.585801 5.1:+79048607 None:intergenic
GGTTGAAGGTGGAGAAGCCA+GGG 0.586503 5.1:+79049040 None:intergenic
TGAAGGACGGAGATGACGTA+TGG 0.589268 5.1:+79048667 None:intergenic
GAACACCGTGGTATAATAGG+AGG 0.593137 5.1:+79048398 None:intergenic
TTGACGACGGTTGATCTCAT+CGG 0.593521 5.1:+79048993 None:intergenic
ATCGGAATTATGTCAAAACA+AGG 0.597188 5.1:-79048577 MS.gene64944:CDS
GGAAAGGTAGTGGTTGAAGG+TGG 0.597732 5.1:+79049029 None:intergenic
GTAACCGGCGGTTCCAGCGG+CGG 0.607268 5.1:+79048786 None:intergenic
TTCAAAGAATCCGTTGACGG+CGG 0.608626 5.1:-79048505 MS.gene64944:CDS
TTTGTCTAGGAGGGAAGACA+TGG 0.612461 5.1:+79048939 None:intergenic
AATATCACAAACCTAAAAGG+TGG 0.621855 5.1:-79048760 MS.gene64944:CDS
GTGAGGGAAAATAGAACAAG+TGG 0.628337 5.1:+79049147 None:intergenic
CGCATTCTAGCTAAACACCC+TGG 0.633646 5.1:-79049057 MS.gene64944:CDS
CGAAGTAGTCGACTAAGACA+TGG 0.635651 5.1:+79048878 None:intergenic
CCAACAGATACCGCCGTCAG+CGG 0.650324 5.1:-79048466 MS.gene64944:CDS
TGCAGAGAAACCGCTGACGG+CGG 0.650965 5.1:+79048456 None:intergenic
GGAGACAAGTGTGGTACCGT+CGG 0.651999 5.1:+79048831 None:intergenic
ATGAACACATTAGCAACCGA+AGG 0.652043 5.1:-79048331 MS.gene64944:CDS
CGTGATGTTGTGGTTGCCGG+AGG 0.655765 5.1:+79049080 None:intergenic
TGAGTGATAATATGAGTGTG+AGG 0.656845 5.1:+79049130 None:intergenic
GGATGGTTATGGTTTGACGA+CGG 0.659324 5.1:+79048980 None:intergenic
GTCTAGGAGGGAAGACATGG+CGG 0.661578 5.1:+79048942 None:intergenic
AACACCGTGGTATAATAGGA+GGG 0.667412 5.1:+79048399 None:intergenic
TAAGAGCAAGAAGAAGAAGG+CGG 0.669561 5.1:-79048095 MS.gene64944:CDS
GGATCCGGTAGCTTGGAACA+TGG 0.672727 5.1:+79048807 None:intergenic
GAGTGATAATATGAGTGTGA+GGG 0.673705 5.1:+79049131 None:intergenic
CTTTGCAGAGAAACCGCTGA+CGG 0.676720 5.1:+79048453 None:intergenic
GTTTCCCTCCTATTATACCA+CGG 0.679718 5.1:-79048403 MS.gene64944:CDS
AAACTCCACCAAATCACCGA+CGG 0.683966 5.1:-79048847 MS.gene64944:CDS
GACGGTTGATCTCATCGGCG+AGG 0.688199 5.1:+79048998 None:intergenic
AGTAGTCGACTAAGACATGG+AGG 0.689421 5.1:+79048881 None:intergenic
TGTGATATTGACGTAACCGG+CGG 0.692479 5.1:+79048774 None:intergenic
GAACATGGAGGAGACAAGTG+TGG 0.699589 5.1:+79048822 None:intergenic
TTTGGTGCCGAAGACAACGA+CGG 0.700628 5.1:-79048727 MS.gene64944:CDS
GTAGTCGACTAAGACATGGA+GGG 0.706207 5.1:+79048882 None:intergenic
CAGATGTTGAAATCAAACAA+CGG 0.715747 5.1:-79048358 MS.gene64944:CDS
TCCGGTAGCTTGGAACATGG+AGG 0.720001 5.1:+79048810 None:intergenic
ATTGGTATACTGGAACACCG+TGG 0.802627 5.1:+79048386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTTCAGTTTGTTTAT+TGG - chr5.1:79049149-79049168 MS.gene64944:CDS 20.0%
! AATATTTGCAGTGTTAACTT+TGG + chr5.1:79048841-79048860 None:intergenic 25.0%
! ATTTCAACATCTGTAATGAT+TGG + chr5.1:79048725-79048744 None:intergenic 25.0%
! CTTATCTTATACACTACAAA+AGG + chr5.1:79048888-79048907 None:intergenic 25.0%
! TGTAGTGTATAAGATAAGTA+AGG - chr5.1:79048890-79048909 MS.gene64944:CDS 25.0%
!! CTGTGAAATCATATTTGTTA+TGG + chr5.1:79048785-79048804 None:intergenic 25.0%
!!! GAGTTAATGGATTAAATCAA+GGG - chr5.1:79049111-79049130 MS.gene64944:CDS 25.0%
!!! TTAAAGGATTACTGATTTGA+AGG + chr5.1:79048443-79048462 None:intergenic 25.0%
AATATCACAAACCTAAAAGG+TGG - chr5.1:79048330-79048349 MS.gene64944:CDS 30.0%
AGAATTGTTTAAGGGAGTTA+AGG - chr5.1:79048926-79048945 MS.gene64944:CDS 30.0%
ATCGGAATTATGTCAAAACA+AGG - chr5.1:79048513-79048532 MS.gene64944:CDS 30.0%
ATCTGTAATGATTGGTATAC+TGG + chr5.1:79048717-79048736 None:intergenic 30.0%
ATGCCAAGAGAATTGTTTAA+GGG - chr5.1:79048918-79048937 MS.gene64944:CDS 30.0%
CAGATGTTGAAATCAAACAA+CGG - chr5.1:79048732-79048751 MS.gene64944:CDS 30.0%
GATGATGAAAATGGAGTTAA+TGG - chr5.1:79049098-79049117 MS.gene64944:CDS 30.0%
GTAACAAATCTGCAAAAGAT+TGG + chr5.1:79048542-79048561 None:intergenic 30.0%
GTCAATATCACAAACCTAAA+AGG - chr5.1:79048327-79048346 MS.gene64944:CDS 30.0%
GTTAACACTGCAAATATTGT+TGG - chr5.1:79048843-79048862 MS.gene64944:CDS 30.0%
! TTCTACGGATTTTACGTAAA+AGG + chr5.1:79048397-79048416 None:intergenic 30.0%
!! AAACTTTTTGAGAGTCTGTT+AGG + chr5.1:79048671-79048690 None:intergenic 30.0%
!! ATCATATTTGTTATGGCCTT+CGG + chr5.1:79048778-79048797 None:intergenic 30.0%
!! CCAAGTGACATTGATTTAAT+CGG - chr5.1:79048495-79048514 MS.gene64944:CDS 30.0%
!! GGAGTTAATGGATTAAATCA+AGG - chr5.1:79049110-79049129 MS.gene64944:CDS 30.0%
ACTCCCTTAAACAATTCTCT+TGG + chr5.1:79048924-79048943 None:intergenic 35.0%
ACTTTCAAAGAATCCGTTGA+CGG - chr5.1:79048582-79048601 MS.gene64944:CDS 35.0%
ATTGTTTAAGGGAGTTAAGG+AGG - chr5.1:79048929-79048948 MS.gene64944:CDS 35.0%
CCGATTAAATCAATGTCACT+TGG + chr5.1:79048498-79048517 None:intergenic 35.0%
GAGTGATAATATGAGTGTGA+GGG + chr5.1:79047962-79047981 None:intergenic 35.0%
GATGCCAAGAGAATTGTTTA+AGG - chr5.1:79048917-79048936 MS.gene64944:CDS 35.0%
GATTTCACAGTGCAAAATGA+TGG - chr5.1:79048795-79048814 MS.gene64944:CDS 35.0%
GTTTGTGATATTGACGTAAC+CGG + chr5.1:79048322-79048341 None:intergenic 35.0%
TCAAGGGTTGAGATTCATTA+TGG - chr5.1:79049127-79049146 MS.gene64944:CDS 35.0%
TGAGTGATAATATGAGTGTG+AGG + chr5.1:79047963-79047982 None:intergenic 35.0%
! AAAGCTGCTGATGATGAAAA+TGG - chr5.1:79049089-79049108 MS.gene64944:CDS 35.0%
! CAACGGATTCTTTGAAAGTA+GGG + chr5.1:79048581-79048600 None:intergenic 35.0%
! CAGTGTTAACTTTGGTTTCA+AGG + chr5.1:79048833-79048852 None:intergenic 35.0%
! CAGTTTGTTTATTGGTGCTT+TGG - chr5.1:79049157-79049176 MS.gene64944:CDS 35.0%
! TCAACGGATTCTTTGAAAGT+AGG + chr5.1:79048582-79048601 None:intergenic 35.0%
!! AGGATTACTGATTTGAAGGA+CGG + chr5.1:79048439-79048458 None:intergenic 35.0%
AACACCGTGGTATAATAGGA+GGG + chr5.1:79048694-79048713 None:intergenic 40.0%
AACCTAAAAGGTGGCAAAGT+CGG - chr5.1:79048339-79048358 MS.gene64944:CDS 40.0%
ATGAACACATTAGCAACCGA+AGG - chr5.1:79048759-79048778 MS.gene64944:CDS 40.0%
CATGTCTTAGTCGACTACTT+CGG - chr5.1:79048213-79048232 MS.gene64944:CDS 40.0%
GACGTATGGAAGTTCTTCTA+CGG + chr5.1:79048412-79048431 None:intergenic 40.0%
GAGTAAGAGCAAGAAGAAGA+AGG - chr5.1:79048992-79049011 MS.gene64944:CDS 40.0%
GTGAGGGAAAATAGAACAAG+TGG + chr5.1:79047946-79047965 None:intergenic 40.0%
GTTTCCCTCCTATTATACCA+CGG - chr5.1:79048687-79048706 MS.gene64944:CDS 40.0%
TAAGAGCAAGAAGAAGAAGG+CGG - chr5.1:79048995-79049014 MS.gene64944:CDS 40.0%
!!! CTCTTACTCTTTGCTGCTTT+TGG + chr5.1:79048981-79049000 None:intergenic 40.0%
AAACTCCACCAAATCACCGA+CGG - chr5.1:79048243-79048262 MS.gene64944:CDS 45.0%
AACAGTTAAACCGCCGTCAA+CGG + chr5.1:79048598-79048617 None:intergenic 45.0%
AGTAGTCGACTAAGACATGG+AGG + chr5.1:79048212-79048231 None:intergenic 45.0%
ATGAAGACCGTCGTTGTCTT+CGG + chr5.1:79048373-79048392 None:intergenic 45.0%
ATTGGTATACTGGAACACCG+TGG + chr5.1:79048707-79048726 None:intergenic 45.0%
CGAAGTAGTCGACTAAGACA+TGG + chr5.1:79048215-79048234 None:intergenic 45.0%
CTGGAACACCGTGGTATAAT+AGG + chr5.1:79048698-79048717 None:intergenic 45.0%
GAACACCGTGGTATAATAGG+AGG + chr5.1:79048695-79048714 None:intergenic 45.0%
GGATGGTTATGGTTTGACGA+CGG + chr5.1:79048113-79048132 None:intergenic 45.0%
GTAGTCGACTAAGACATGGA+GGG + chr5.1:79048211-79048230 None:intergenic 45.0%
TCAGAATCTGCATCTGCATC+TGG + chr5.1:79049062-79049081 None:intergenic 45.0%
TGTGATATTGACGTAACCGG+CGG + chr5.1:79048319-79048338 None:intergenic 45.0%
TTCAAAGAATCCGTTGACGG+CGG - chr5.1:79048585-79048604 MS.gene64944:CDS 45.0%
TTGACGACGGTTGATCTCAT+CGG + chr5.1:79048100-79048119 None:intergenic 45.0%
TTTGTCTAGGAGGGAAGACA+TGG + chr5.1:79048154-79048173 None:intergenic 45.0%
! GAGGGAGAGGACATTTTTGA+GGG + chr5.1:79048193-79048212 None:intergenic 45.0%
! GATGGAAAGGTAGTGGTTGA+AGG + chr5.1:79048067-79048086 None:intergenic 45.0%
!! AAAGGTGGCAAAGTCGGTTT+TGG - chr5.1:79048345-79048364 MS.gene64944:CDS 45.0%
!! AACCGACTTTGCCACCTTTT+AGG + chr5.1:79048344-79048363 None:intergenic 45.0%
!! GACATTTTTGAGGGTGGTGA+TGG + chr5.1:79048184-79048203 None:intergenic 45.0%
!! GGTGATTTGGTGGAGTTTCT+TGG + chr5.1:79048241-79048260 None:intergenic 45.0%
!! TGATGGAGAGGTGTTTGTCT+AGG + chr5.1:79048167-79048186 None:intergenic 45.0%
CTAGAATGCGCGTGATGTTG+TGG + chr5.1:79048023-79048042 None:intergenic 50.0%
CTTTGCAGAGAAACCGCTGA+CGG + chr5.1:79048640-79048659 None:intergenic 50.0%
GAACATGGAGGAGACAAGTG+TGG + chr5.1:79048271-79048290 None:intergenic 50.0%
GTCGATGGCTAGGATGGTTA+TGG + chr5.1:79048124-79048143 None:intergenic 50.0%
TCCTCCATGTTCCAAGCTAC+CGG - chr5.1:79048279-79048298 MS.gene64944:CDS 50.0%
TGAAGGACGGAGATGACGTA+TGG + chr5.1:79048426-79048445 None:intergenic 50.0%
! CGCATTCTAGCTAAACACCC+TGG - chr5.1:79048033-79048052 MS.gene64944:CDS 50.0%
! GGAAAGGTAGTGGTTGAAGG+TGG + chr5.1:79048064-79048083 None:intergenic 50.0%
! GGAGGGAGAGGACATTTTTG+AGG + chr5.1:79048194-79048213 None:intergenic 50.0%
!! GGAGAGGACATTTTTGAGGG+TGG + chr5.1:79048190-79048209 None:intergenic 50.0%
!! GGAGAGGTGTTTGTCTAGGA+GGG + chr5.1:79048163-79048182 None:intergenic 50.0%
!! TGGAGAGGTGTTTGTCTAGG+AGG + chr5.1:79048164-79048183 None:intergenic 50.0%
!! TTTGGTGCCGAAGACAACGA+CGG - chr5.1:79048363-79048382 MS.gene64944:CDS 50.0%
!!! CTCTTTGCTGCTTTTGGTGC+TGG + chr5.1:79048975-79048994 None:intergenic 50.0%
!!! TTTTGAGGGTGGTGATGGAG+AGG + chr5.1:79048179-79048198 None:intergenic 50.0%
AGACATGGCGGCATTGTCGA+TGG + chr5.1:79048139-79048158 None:intergenic 55.0%
CGACTAAGACATGGAGGGAG+AGG + chr5.1:79048206-79048225 None:intergenic 55.0%
GGAGACAAGTGTGGTACCGT+CGG + chr5.1:79048262-79048281 None:intergenic 55.0%
GGATCCGGTAGCTTGGAACA+TGG + chr5.1:79048286-79048305 None:intergenic 55.0%
GGATGAGGATGCAGACTCAC+CGG - chr5.1:79049028-79049047 MS.gene64944:CDS 55.0%
GGCATTGTCGATGGCTAGGA+TGG + chr5.1:79048130-79048149 None:intergenic 55.0%
GGTTGAAGGTGGAGAAGCCA+GGG + chr5.1:79048053-79048072 None:intergenic 55.0%
GTCTAGGAGGGAAGACATGG+CGG + chr5.1:79048151-79048170 None:intergenic 55.0%
GTGTGGTACCGTCGGTGATT+TGG + chr5.1:79048254-79048273 None:intergenic 55.0%
GTTGATCTCATCGGCGAGGT+GGG + chr5.1:79048091-79048110 None:intergenic 55.0%
TCCGGTAGCTTGGAACATGG+AGG + chr5.1:79048283-79048302 None:intergenic 55.0%
TCTGCATCTGGTCCATCTGC+CGG + chr5.1:79049050-79049069 None:intergenic 55.0%
TGGTTGAAGGTGGAGAAGCC+AGG + chr5.1:79048054-79048073 None:intergenic 55.0%
! ATGTCACTTGGAGCTGCCGT+CGG + chr5.1:79048486-79048505 None:intergenic 55.0%
! TGGTACCGTCGGTGATTTGG+TGG + chr5.1:79048251-79048270 None:intergenic 55.0%
!! GGTGGGTGATGGAAAGGTAG+TGG + chr5.1:79048074-79048093 None:intergenic 55.0%
CAAGAAGAAGAAGGCGGCGC+CGG - chr5.1:79049001-79049020 MS.gene64944:CDS 60.0%
CCAACAGATACCGCCGTCAG+CGG - chr5.1:79048624-79048643 MS.gene64944:CDS 60.0%
CGTGATGTTGTGGTTGCCGG+AGG + chr5.1:79048013-79048032 None:intergenic 60.0%
GACGGTTGATCTCATCGGCG+AGG + chr5.1:79048095-79048114 None:intergenic 60.0%
GATGCAGACTCACCGGCAGA+TGG - chr5.1:79049035-79049054 MS.gene64944:CDS 60.0%
GATGTTGTGGTTGCCGGAGG+TGG + chr5.1:79048010-79048029 None:intergenic 60.0%
GCGCGTGATGTTGTGGTTGC+CGG + chr5.1:79048016-79048035 None:intergenic 60.0%
GGTTGATCTCATCGGCGAGG+TGG + chr5.1:79048092-79048111 None:intergenic 60.0%
TGCAGAGAAACCGCTGACGG+CGG + chr5.1:79048637-79048656 None:intergenic 60.0%
TGGCGGCATTGTCGATGGCT+AGG + chr5.1:79048134-79048153 None:intergenic 60.0%
! TCTGCGTCGGCGGAGCTTAA+AGG + chr5.1:79048459-79048478 None:intergenic 60.0%
!!! GCTGCTTTTGGTGCTGGAGC+TGG + chr5.1:79048969-79048988 None:intergenic 60.0%
CCGCTGACGGCGGTATCTGT+TGG + chr5.1:79048627-79048646 None:intergenic 65.0%
CTCATCGGCGAGGTGGGTGA+TGG + chr5.1:79048085-79048104 None:intergenic 65.0%
GACGTAACCGGCGGTTCCAG+CGG + chr5.1:79048310-79048329 None:intergenic 65.0%
GTTGTGGTTGCCGGAGGTGG+CGG + chr5.1:79048007-79048026 None:intergenic 65.0%
TCTGCATCCTCATCCGCCGC+CGG + chr5.1:79049023-79049042 None:intergenic 65.0%
!! CGGCGAGGTGGGTGATGGAA+AGG + chr5.1:79048080-79048099 None:intergenic 65.0%
CAAGCTACCGGATCCGCCGC+TGG - chr5.1:79048291-79048310 MS.gene64944:CDS 70.0%
CAGCGGCGGATCCGGTAGCT+TGG + chr5.1:79048293-79048312 None:intergenic 70.0%
GTAACCGGCGGTTCCAGCGG+CGG + chr5.1:79048307-79048326 None:intergenic 70.0%
TGCCGTCGGCGCTTCTGCGT+CGG + chr5.1:79048472-79048491 None:intergenic 70.0%
! GAAGAAGAAGGCGGCGCCGG+CGG - chr5.1:79049004-79049023 MS.gene64944:CDS 70.0%
ATCGCCGCTGCCGCCACCTC+CGG - chr5.1:79047994-79048013 MS.gene64944:CDS 75.0%
CGTCGGCGCTTCTGCGTCGG+CGG + chr5.1:79048469-79048488 None:intergenic 75.0%
GGATCCGCCGCTGGAACCGC+CGG - chr5.1:79048300-79048319 MS.gene64944:CDS 75.0%
GGCGGTTCCAGCGGCGGATC+CGG + chr5.1:79048301-79048320 None:intergenic 75.0%
! GTTGCCGGAGGTGGCGGCAG+CGG + chr5.1:79048001-79048020 None:intergenic 75.0%
!! CGCCGACGCAGAAGCGCCGA+CGG - chr5.1:79048467-79048486 MS.gene64944:CDS 75.0%
!! GGAGGTGGCGGCAGCGGCGA+TGG + chr5.1:79047995-79048014 None:intergenic 80.0%
!! GGTGGCGGCAGCGGCGATGG+TGG + chr5.1:79047992-79048011 None:intergenic 80.0%
!!! GAAGAAGGCGGCGCCGGCGG+CGG - chr5.1:79049007-79049026 MS.gene64944:CDS 80.0%
!!! GGCGGCGCCGGCGGCGGATG+AGG - chr5.1:79049013-79049032 MS.gene64944:CDS 90.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 79047925 79049187 79047925 ID=MS.gene64944
chr5.1 mRNA 79047925 79049187 79047925 ID=MS.gene64944.t1;Parent=MS.gene64944
chr5.1 exon 79047925 79049187 79047925 ID=MS.gene64944.t1.exon1;Parent=MS.gene64944.t1
chr5.1 CDS 79047925 79049187 79047925 ID=cds.MS.gene64944.t1;Parent=MS.gene64944.t1
Gene Sequence

>MS.gene64944

ATGAAGAAGCAACTAGCACCACTTGTTCTATTTTCCCTCACACTCATATTATCACTCATTCATTCCACCATCGCCGCTGCCGCCACCTCCGGCAACCACAACATCACGCGCATTCTAGCTAAACACCCTGGCTTCTCCACCTTCAACCACTACCTTTCCATCACCCACCTCGCCGATGAGATCAACCGTCGTCAAACCATAACCATCCTAGCCATCGACAATGCCGCCATGTCTTCCCTCCTAGACAAACACCTCTCCATCACCACCCTCAAAAATGTCCTCTCCCTCCATGTCTTAGTCGACTACTTCGGCGCCAAGAAACTCCACCAAATCACCGACGGTACCACACTTGTCTCCTCCATGTTCCAAGCTACCGGATCCGCCGCTGGAACCGCCGGTTACGTCAATATCACAAACCTAAAAGGTGGCAAAGTCGGTTTTGGTGCCGAAGACAACGACGGTCTTCATTCCTTTTACGTAAAATCCGTAGAAGAACTTCCATACGTCATCTCCGTCCTTCAAATCAGTAATCCTTTAAGCTCCGCCGACGCAGAAGCGCCGACGGCAGCTCCAAGTGACATTGATTTAATCGGAATTATGTCAAAACAAGGTTGCCAATCTTTTGCAGATTTGTTACGTGTTTCAAAAGCACTCCCTACTTTCAAAGAATCCGTTGACGGCGGTTTAACTGTTTTCTGTCCAACAGATACCGCCGTCAGCGGTTTCTCTGCAAAGTACAAAAACCTAACAGACTCTCAAAAAGTTTCCCTCCTATTATACCACGGTGTTCCAGTATACCAATCATTACAGATGTTGAAATCAAACAACGGTGTAATGAACACATTAGCAACCGAAGGCCATAACAAATATGATTTCACAGTGCAAAATGATGGTGAAGATGTTAACCTTGAAACCAAAGTTAACACTGCAAATATTGTTGGTACATTAATTGATCAAGATCCTTTTGTAGTGTATAAGATAAGTAAGGTTTTGATGCCAAGAGAATTGTTTAAGGGAGTTAAGGAGGAGAAAGATTTAGCACCAGCTCCAGCACCAAAAGCAGCAAAGAGTAAGAGCAAGAAGAAGAAGGCGGCGCCGGCGGCGGATGAGGATGCAGACTCACCGGCAGATGGACCAGATGCAGATGCAGATTCTGATGATCAGAAAGCTGCTGATGATGAAAATGGAGTTAATGGATTAAATCAAGGGTTGAGATTCATTATGGTATTTTTCAGTTTGTTTATTGGTGCTTTGGTTCTATAA
Protein sequence

>MS.gene64944.t1

MKKQLAPLVLFSLTLILSLIHSTIAAAATSGNHNITRILAKHPGFSTFNHYLSITHLADEINRRQTITILAIDNAAMSSLLDKHLSITTLKNVLSLHVLVDYFGAKKLHQITDGTTLVSSMFQATGSAAGTAGYVNITNLKGGKVGFGAEDNDGLHSFYVKSVEELPYVISVLQISNPLSSADAEAPTAAPSDIDLIGIMSKQGCQSFADLLRVSKALPTFKESVDGGLTVFCPTDTAVSGFSAKYKNLTDSQKVSLLLYHGVPVYQSLQMLKSNNGVMNTLATEGHNKYDFTVQNDGEDVNLETKVNTANIVGTLIDQDPFVVYKISKVLMPRELFKGVKEEKDLAPAPAPKAAKSKSKKKKAAPAADEDADSPADGPDADADSDDQKAADDENGVNGLNQGLRFIMVFFSLFIGALVL