Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65355.t1 | XP_003614571.1 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 1.20E-48 | 202.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65355.t1 | Q17Q89 | 44.7 | 103 | 57 | 0 | 9 | 111 | 5 | 107 | 4.1e-16 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65355.t1 | G7K0G0 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 9.0e-49 | 202.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene65355 | 0.827352 | 1.64E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene65355 | 0.824231 | 9.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65355.t1 | MTR_5g055650 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 1.59e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65355.t1 | AT1G29990 | 88.288 | 111 | 13 | 0 | 1 | 111 | 1 | 111 | 4.76e-67 | 198 |
Find 15 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCACGGTTCAAGATT+TGG | 0.316433 | 5.1:+43639397 | MS.gene65355:CDS |
| TGTACTTGTTAAGCAAGATT+TGG | 0.330090 | 5.1:+43635919 | MS.gene65355:CDS |
| CGAAAATGAGCTCGTTCTTA+AGG | 0.364571 | 5.1:+43635426 | MS.gene65355:CDS |
| TAGAGATCTTCAACGCGAAT+TGG | 0.368259 | 5.1:+43635223 | MS.gene65355:CDS |
| GCAAATGTTTACAAGTTGAT+TGG | 0.380956 | 5.1:+43635893 | MS.gene65355:CDS |
| CGATCTCAACAAGCTTCAAA+AGG | 0.400711 | 5.1:+43635259 | MS.gene65355:CDS |
| AAATCTTGCTTAACAAGTAC+AGG | 0.520028 | 5.1:-43635917 | None:intergenic |
| TCTCTTGCGAACATTTGCAT+TGG | 0.528626 | 5.1:-43635948 | None:intergenic |
| GATCTCAACAAGCTTCAAAA+GGG | 0.534109 | 5.1:+43635260 | MS.gene65355:CDS |
| GCAGAATAGCAAGAAAGAAA+CGG | 0.544496 | 5.1:+43639427 | MS.gene65355:CDS |
| CTCTTCCAAATCTTGAACCG+TGG | 0.545459 | 5.1:-43639402 | None:intergenic |
| CAGGAAGCGTCTTGATGCCA+CGG | 0.578703 | 5.1:+43639385 | MS.gene65355:intron |
| AAGAAGTATACTATTCAACT+TGG | 0.590644 | 5.1:+43635403 | MS.gene65355:CDS |
| TGTTAAGCAAGATTTGGCTG+AGG | 0.593363 | 5.1:+43635925 | MS.gene65355:CDS |
| GCGTTGAAGATCTCTAATGT+TGG | 0.594934 | 5.1:-43635216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAT+TGG | + | chr5.1:43638745-43638764 | MS.gene65355:intron | 0.0% |
| !! | TAATTTATTCATAGATAAAA+GGG | + | chr5.1:43636377-43636396 | MS.gene65355:intron | 10.0% |
| !!! | AAAACTATTTTATCATTTAT+AGG | - | chr5.1:43636494-43636513 | None:intergenic | 10.0% |
| !!! | AAACTTTTTTTTTTAAATCT+CGG | - | chr5.1:43635622-43635641 | None:intergenic | 10.0% |
| !!! | AATAAAAATCTAAAACAAAA+TGG | - | chr5.1:43637999-43638018 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTTTCTTGATTT+TGG | + | chr5.1:43636010-43636029 | MS.gene65355:intron | 10.0% |
| !!! | TTTTTTTTTTTTTGAAAACT+CGG | - | chr5.1:43638738-43638757 | None:intergenic | 10.0% |
| !! | AAAAAAAATTGGAAAGTTAA+TGG | + | chr5.1:43638756-43638775 | MS.gene65355:intron | 15.0% |
| !! | ATGTTTAATTACATTAGTAT+TGG | + | chr5.1:43638169-43638188 | MS.gene65355:intron | 15.0% |
| !! | ATTGTAATAGATAAATAACT+TGG | + | chr5.1:43637064-43637083 | MS.gene65355:intron | 15.0% |
| !! | GTAATTTATTCATAGATAAA+AGG | + | chr5.1:43636376-43636395 | MS.gene65355:intron | 15.0% |
| !! | TACATCATTATACAAAAATT+CGG | - | chr5.1:43638974-43638993 | None:intergenic | 15.0% |
| !! | TTGTAATAGATAAATAACTT+GGG | + | chr5.1:43637065-43637084 | MS.gene65355:intron | 15.0% |
| !! | TTTCTATTTCAAATTCTTAT+TGG | + | chr5.1:43637940-43637959 | MS.gene65355:intron | 15.0% |
| !! | TTTGTAAGTTTGTAATAAAT+TGG | + | chr5.1:43638577-43638596 | MS.gene65355:intron | 15.0% |
| !!! | ATTTTGTATTCTAAAATATC+AGG | + | chr5.1:43638199-43638218 | MS.gene65355:intron | 15.0% |
| !!! | TATTTTTTTGTTATTGCTTT+TGG | + | chr5.1:43636305-43636324 | MS.gene65355:intron | 15.0% |
| !!! | TTTTGTATTCTAAAATATCA+GGG | + | chr5.1:43638200-43638219 | MS.gene65355:intron | 15.0% |
| !! | AAATAATCACTACAAAGTAT+TGG | + | chr5.1:43636223-43636242 | MS.gene65355:intron | 20.0% |
| !! | AATCATTTATGGATATTATC+AGG | + | chr5.1:43639012-43639031 | MS.gene65355:intron | 20.0% |
| !! | ACATAACAAAAATAAAAGCA+AGG | + | chr5.1:43637415-43637434 | MS.gene65355:intron | 20.0% |
| !! | ATAACCCTAAAATACATAAA+AGG | - | chr5.1:43635455-43635474 | None:intergenic | 20.0% |
| !! | ATCAACAAAAATTAAGTCTA+CGG | - | chr5.1:43636552-43636571 | None:intergenic | 20.0% |
| !! | ATTACATATTCTTCATCTAA+AGG | - | chr5.1:43636361-43636380 | None:intergenic | 20.0% |
| !! | TAACCCTAAAATACATAAAA+GGG | - | chr5.1:43635454-43635473 | None:intergenic | 20.0% |
| !! | TACAAAAATAAGGATGAAAA+TGG | + | chr5.1:43636711-43636730 | MS.gene65355:intron | 20.0% |
| !! | TACCAAAAACAAATCATTTA+TGG | + | chr5.1:43639001-43639020 | MS.gene65355:intron | 20.0% |
| !! | TAGGATACAAGAAAAAAAAA+TGG | - | chr5.1:43636475-43636494 | None:intergenic | 20.0% |
| !! | TAGTTTGGAAATATAAGTAA+GGG | + | chr5.1:43637093-43637112 | MS.gene65355:intron | 20.0% |
| !! | TCTTTAATATACTCAAGATT+AGG | + | chr5.1:43639210-43639229 | MS.gene65355:intron | 20.0% |
| !! | TTTATCTATTACAATCTAGA+AGG | - | chr5.1:43637059-43637078 | None:intergenic | 20.0% |
| !! | TTTGTAATAAATTGGAAAGT+TGG | + | chr5.1:43638585-43638604 | MS.gene65355:intron | 20.0% |
| !!! | ACAATCATTTGATTAGTTAT+GGG | - | chr5.1:43637524-43637543 | None:intergenic | 20.0% |
| !!! | ACTTAATTTTTGTTGATATG+CGG | + | chr5.1:43636555-43636574 | MS.gene65355:intron | 20.0% |
| !!! | AGTCAGAATAAAGTATATTT+TGG | - | chr5.1:43638909-43638928 | None:intergenic | 20.0% |
| !!! | ATCCATAAATGATTTGTTTT+TGG | - | chr5.1:43639006-43639025 | None:intergenic | 20.0% |
| !!! | CTTCATTTTAGATATTGTTA+TGG | + | chr5.1:43639267-43639286 | MS.gene65355:intron | 20.0% |
| !!! | TACAATCATTTGATTAGTTA+TGG | - | chr5.1:43637525-43637544 | None:intergenic | 20.0% |
| !!! | TGATACTGTTTTATTGTTAT+TGG | + | chr5.1:43638479-43638498 | MS.gene65355:intron | 20.0% |
| !!! | TTAGAGAAATATGTTGTTTA+AGG | + | chr5.1:43636596-43636615 | MS.gene65355:intron | 20.0% |
| !!! | TTAGTTTGGAAATATAAGTA+AGG | + | chr5.1:43637092-43637111 | MS.gene65355:intron | 20.0% |
| !!! | TTTATCAAATTCTTTTGACA+TGG | + | chr5.1:43638404-43638423 | MS.gene65355:intron | 20.0% |
| !!! | TTTTATTTTCTTGATTTTGG+AGG | + | chr5.1:43636013-43636032 | MS.gene65355:intron | 20.0% |
| ! | AACAATGAATTTGACTATCT+TGG | + | chr5.1:43636430-43636449 | MS.gene65355:intron | 25.0% |
| ! | AATAAAACAGTATCACAATG+AGG | - | chr5.1:43638474-43638493 | None:intergenic | 25.0% |
| ! | ACTACTAAATGTAGAACTAT+AGG | + | chr5.1:43638823-43638842 | MS.gene65355:intron | 25.0% |
| ! | ATAAAACAGTATCACAATGA+GGG | - | chr5.1:43638473-43638492 | None:intergenic | 25.0% |
| ! | ATAATACATACTGTTCAATG+TGG | + | chr5.1:43637969-43637988 | MS.gene65355:intron | 25.0% |
| ! | GAAATAGAAAGAGAGTAAAT+TGG | - | chr5.1:43637930-43637949 | None:intergenic | 25.0% |
| ! | TACCTAAATGTATTTATCTC+AGG | + | chr5.1:43638026-43638045 | MS.gene65355:intron | 25.0% |
| ! | TTAGTATAGGGAAAAAAACT+CGG | + | chr5.1:43636950-43636969 | MS.gene65355:intron | 25.0% |
| !! | AAAAAGATGAACGATTTTGA+AGG | - | chr5.1:43635336-43635355 | None:intergenic | 25.0% |
| !! | AAAATATGTTGCTCAGTTTT+TGG | + | chr5.1:43638779-43638798 | MS.gene65355:intron | 25.0% |
| !! | AAGAAGTATACTATTCAACT+TGG | + | chr5.1:43635403-43635422 | MS.gene65355:CDS | 25.0% |
| !! | CAAAAATCAAACCATCATTT+TGG | - | chr5.1:43635800-43635819 | None:intergenic | 25.0% |
| !! | GAAATATGTTGTTTAAGGAT+AGG | + | chr5.1:43636601-43636620 | MS.gene65355:intron | 25.0% |
| !! | GTACCCTTTTATGTATTTTA+GGG | + | chr5.1:43635448-43635467 | MS.gene65355:intron | 25.0% |
| !! | TTGATTTTCGAATGTGTATT+CGG | + | chr5.1:43635667-43635686 | MS.gene65355:intron | 25.0% |
| !! | TTGATTTTCGAATGTGTATT+TGG | + | chr5.1:43635667-43635686 | MS.gene65355:intron | 25.0% |
| !!! | ATGAAACAGATCATTTTTCT+AGG | - | chr5.1:43636063-43636082 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTCGTTTTTCAAT+AGG | + | chr5.1:43635847-43635866 | MS.gene65355:intron | 25.0% |
| !!! | GTGTAACATTTTTTACTTAG+CGG | - | chr5.1:43638516-43638535 | None:intergenic | 25.0% |
| !!! | TCATCCTTATTTTTGTACAA+TGG | - | chr5.1:43636708-43636727 | None:intergenic | 25.0% |
| !!! | TGATTAAACATTTTGAGAAG+TGG | + | chr5.1:43637815-43637834 | MS.gene65355:intron | 25.0% |
| !!! | TGGTTATTTTTGATACATTC+AGG | + | chr5.1:43635737-43635756 | MS.gene65355:intron | 25.0% |
| !!! | TTTTTTTAAATCTCGGTATC+CGG | - | chr5.1:43635615-43635634 | None:intergenic | 25.0% |
| AAAAACTCGGTATTAGCAAA+AGG | + | chr5.1:43636963-43636982 | MS.gene65355:intron | 30.0% | |
| AAAATGGAAATCAACTGTTC+AGG | - | chr5.1:43636459-43636478 | None:intergenic | 30.0% | |
| AAATCTTGCTTAACAAGTAC+AGG | - | chr5.1:43635920-43635939 | None:intergenic | 30.0% | |
| AACATAAAGTACACCTGTTT+AGG | - | chr5.1:43638546-43638565 | None:intergenic | 30.0% | |
| AACCACTTGGAATGTTTATT+AGG | + | chr5.1:43636178-43636197 | MS.gene65355:intron | 30.0% | |
| AATTCATTGTTTGTAAGTGC+AGG | - | chr5.1:43636421-43636440 | None:intergenic | 30.0% | |
| ACAAAGAAACAAAGATCAAG+AGG | - | chr5.1:43638140-43638159 | None:intergenic | 30.0% | |
| ACCACTTGGAATGTTTATTA+GGG | + | chr5.1:43636179-43636198 | MS.gene65355:intron | 30.0% | |
| AGTACATGATTTGATTCATC+TGG | + | chr5.1:43636107-43636126 | MS.gene65355:intron | 30.0% | |
| ATGATTGAAAAGTAACCACT+TGG | + | chr5.1:43636165-43636184 | MS.gene65355:intron | 30.0% | |
| ATTTGCAACAAAGCACAAAT+AGG | - | chr5.1:43638314-43638333 | None:intergenic | 30.0% | |
| CTAAAAAACAAGGGTTGTTT+AGG | + | chr5.1:43638360-43638379 | MS.gene65355:intron | 30.0% | |
| CTGTCTTCATCTTTAGTATA+GGG | + | chr5.1:43636938-43636957 | MS.gene65355:intron | 30.0% | |
| GCTTCCATTGTACAAAAATA+AGG | + | chr5.1:43636701-43636720 | MS.gene65355:intron | 30.0% | |
| GGTCTGCTATATAAAGATAT+AGG | + | chr5.1:43637032-43637051 | MS.gene65355:intron | 30.0% | |
| GTCCTGAGATAAATACATTT+AGG | - | chr5.1:43638031-43638050 | None:intergenic | 30.0% | |
| TAAAACAGTATCACAATGAG+GGG | - | chr5.1:43638472-43638491 | None:intergenic | 30.0% | |
| TAAGTAAGGGAATGAAAGAA+AGG | + | chr5.1:43637106-43637125 | MS.gene65355:intron | 30.0% | |
| TACATTTGATGAGCTTACAA+TGG | - | chr5.1:43636796-43636815 | None:intergenic | 30.0% | |
| TAGCTATATATTTGCATACG+TGG | + | chr5.1:43636258-43636277 | MS.gene65355:intron | 30.0% | |
| TATGACTAGAACCTATAACA+AGG | + | chr5.1:43636893-43636912 | MS.gene65355:intron | 30.0% | |
| ! | ATTAGCAAAAGGTGTATGTT+AGG | + | chr5.1:43636974-43636993 | MS.gene65355:intron | 30.0% |
| ! | GAGAACATTTTGTTCTCTAA+AGG | - | chr5.1:43637500-43637519 | None:intergenic | 30.0% |
| ! | GGTACCCTTTTATGTATTTT+AGG | + | chr5.1:43635447-43635466 | MS.gene65355:intron | 30.0% |
| ! | TGTACTTGTTAAGCAAGATT+TGG | + | chr5.1:43635919-43635938 | MS.gene65355:CDS | 30.0% |
| !! | ATTGCTTTTGGATGAAGAAT+AGG | + | chr5.1:43636317-43636336 | MS.gene65355:intron | 30.0% |
| !! | GCAAATGTTTACAAGTTGAT+TGG | + | chr5.1:43635893-43635912 | MS.gene65355:CDS | 30.0% |
| !! | TGAACGATTTTGAAGGAATT+AGG | - | chr5.1:43635329-43635348 | None:intergenic | 30.0% |
| !! | TTTTACCAAGCTTGTTCTTA+AGG | + | chr5.1:43635489-43635508 | MS.gene65355:intron | 30.0% |
| !! | TTTTGGTTAAGGAATTGGAA+GGG | + | chr5.1:43638796-43638815 | MS.gene65355:intron | 30.0% |
| !!! | AACAACCCTTGTTTTTTAGT+CGG | - | chr5.1:43638359-43638378 | None:intergenic | 30.0% |
| !!! | TCAGTTTTTGGTTAAGGAAT+TGG | + | chr5.1:43638791-43638810 | MS.gene65355:intron | 30.0% |
| !!! | TTTTTGGTTAAGGAATTGGA+AGG | + | chr5.1:43638795-43638814 | MS.gene65355:intron | 30.0% |
| AAAGGAAGAGAGTAAAGAGA+AGG | + | chr5.1:43637770-43637789 | MS.gene65355:intron | 35.0% | |
| AAGGAAGAGAGTAAAGAGAA+GGG | + | chr5.1:43637771-43637790 | MS.gene65355:intron | 35.0% | |
| AAGTAGAGGATTAAACCTTC+TGG | + | chr5.1:43637740-43637759 | MS.gene65355:intron | 35.0% | |
| ACTTTATTCTGACTCAGAAG+TGG | + | chr5.1:43638915-43638934 | MS.gene65355:intron | 35.0% | |
| AGAAAGAGAGTAAATTGGCA+GGG | - | chr5.1:43637925-43637944 | None:intergenic | 35.0% | |
| AGAACAACAAGGATAGATGT+TGG | - | chr5.1:43638448-43638467 | None:intergenic | 35.0% | |
| AGGTGTATGTTAGGAGAAAT+AGG | + | chr5.1:43636983-43637002 | MS.gene65355:intron | 35.0% | |
| AGTAGAGGATTAAACCTTCT+GGG | + | chr5.1:43637741-43637760 | MS.gene65355:intron | 35.0% | |
| ATGATTTGATTCATCTGGCA+CGG | + | chr5.1:43636112-43636131 | MS.gene65355:intron | 35.0% | |
| ATGCAAACCATCCACATATT+GGG | + | chr5.1:43637666-43637685 | MS.gene65355:intron | 35.0% | |
| ATTGAACTGAAGGAAAGAAC+AGG | - | chr5.1:43637200-43637219 | None:intergenic | 35.0% | |
| CAACATAAACCACACTAACA+GGG | - | chr5.1:43637705-43637724 | None:intergenic | 35.0% | |
| CAAGGAAAATGCTGTAAAGA+AGG | + | chr5.1:43637433-43637452 | MS.gene65355:intron | 35.0% | |
| CATCGCGATACAATTGAAAA+TGG | - | chr5.1:43637240-43637259 | None:intergenic | 35.0% | |
| CCACTTGGAATGTTTATTAG+GGG | + | chr5.1:43636180-43636199 | MS.gene65355:intron | 35.0% | |
| CTGTTAGTGTGGTTTATGTT+GGG | + | chr5.1:43637704-43637723 | MS.gene65355:intron | 35.0% | |
| CTTTCTATGCTTCACAATAG+CGG | - | chr5.1:43636827-43636846 | None:intergenic | 35.0% | |
| GAGTTTAGGTCTCTTGAAAA+TGG | + | chr5.1:43637839-43637858 | MS.gene65355:intron | 35.0% | |
| GATATGCGGAAAGACTTAAT+TGG | + | chr5.1:43636569-43636588 | MS.gene65355:intron | 35.0% | |
| GATCTCAACAAGCTTCAAAA+GGG | + | chr5.1:43635260-43635279 | MS.gene65355:CDS | 35.0% | |
| GCTGTCTTCATCTTTAGTAT+AGG | + | chr5.1:43636937-43636956 | MS.gene65355:intron | 35.0% | |
| TACTAAAGATGAAGACAGCA+AGG | - | chr5.1:43636936-43636955 | None:intergenic | 35.0% | |
| TAGAAAGAGAGTAAATTGGC+AGG | - | chr5.1:43637926-43637945 | None:intergenic | 35.0% | |
| TAGGGGGAACTCTAATATAA+GGG | - | chr5.1:43637576-43637595 | None:intergenic | 35.0% | |
| TATGCAAACCATCCACATAT+TGG | + | chr5.1:43637665-43637684 | MS.gene65355:intron | 35.0% | |
| TATTATCAGGAAAGTCGTAC+AGG | + | chr5.1:43639025-43639044 | MS.gene65355:intron | 35.0% | |
| TGTCTAATCGCACACATTTA+CGG | - | chr5.1:43637141-43637160 | None:intergenic | 35.0% | |
| TTACACTAAGAGACCTAAAC+AGG | + | chr5.1:43638530-43638549 | MS.gene65355:intron | 35.0% | |
| ! | ACAGATTGCTGCATGTTTTA+AGG | + | chr5.1:43639244-43639263 | MS.gene65355:intron | 35.0% |
| ! | CACATTTAGGACCAAAATGA+TGG | + | chr5.1:43635786-43635805 | MS.gene65355:intron | 35.0% |
| ! | GCTAAGTTTCACTGATTGTT+TGG | + | chr5.1:43635819-43635838 | MS.gene65355:intron | 35.0% |
| ! | TTTTGGTCCTAAATGTGTGA+TGG | - | chr5.1:43635783-43635802 | None:intergenic | 35.0% |
| !! | AGACTCAAGTATTGAACTGA+AGG | - | chr5.1:43637210-43637229 | None:intergenic | 35.0% |
| !! | AGCTTTGCTTTGGCTTTAAA+CGG | + | chr5.1:43638651-43638670 | MS.gene65355:intron | 35.0% |
| !! | ATAACTTGGGCTAGTTAGTT+TGG | + | chr5.1:43637078-43637097 | MS.gene65355:intron | 35.0% |
| !! | GTTCGTTTTTCAATAGGAGT+TGG | + | chr5.1:43635853-43635872 | MS.gene65355:intron | 35.0% |
| !! | GTTCTTAAGGTACCCTTTTA+GGG | + | chr5.1:43635439-43635458 | MS.gene65355:intron | 35.0% |
| !! | TGTTCTTAAGGTACCCTTTT+AGG | + | chr5.1:43635501-43635520 | MS.gene65355:intron | 35.0% |
| !! | TTTTGAGAAGTGGAGAGTTT+AGG | + | chr5.1:43637825-43637844 | MS.gene65355:intron | 35.0% |
| !!! | ACAACCCTTGTTTTTTAGTC+GGG | - | chr5.1:43638358-43638377 | None:intergenic | 35.0% |
| !!! | TGTTGCTCAGTTTTTGGTTA+AGG | + | chr5.1:43638785-43638804 | MS.gene65355:intron | 35.0% |
| ACTCAGAAGTGGAAATGCAT+TGG | + | chr5.1:43638926-43638945 | MS.gene65355:intron | 40.0% | |
| AGTCAGCAGATCTGAATACA+AGG | - | chr5.1:43638098-43638117 | None:intergenic | 40.0% | |
| ATGTGTGCGATTAGACATAC+TGG | + | chr5.1:43637144-43637163 | MS.gene65355:intron | 40.0% | |
| ATTGAAGCCAGAACAAAGCT+CGG | - | chr5.1:43635538-43635557 | None:intergenic | 40.0% | |
| CAAGCCCGACTAAAAAACAA+GGG | + | chr5.1:43638351-43638370 | MS.gene65355:intron | 40.0% | |
| CACTCAACATGGGTAAAACT+AGG | - | chr5.1:43636861-43636880 | None:intergenic | 40.0% | |
| CATCCTTCTTGCAAATCTTG+CGG | + | chr5.1:43637362-43637381 | MS.gene65355:intron | 40.0% | |
| CCAACATAAACCACACTAAC+AGG | - | chr5.1:43637706-43637725 | None:intergenic | 40.0% | |
| CCCCTAATAAACATTCCAAG+TGG | - | chr5.1:43636183-43636202 | None:intergenic | 40.0% | |
| CCTCAACACAAGTCAACATT+TGG | - | chr5.1:43636640-43636659 | None:intergenic | 40.0% | |
| CCTGTTAGTGTGGTTTATGT+TGG | + | chr5.1:43637703-43637722 | MS.gene65355:intron | 40.0% | |
| CGAAAATGAGCTCGTTCTTA+AGG | + | chr5.1:43635426-43635445 | MS.gene65355:CDS | 40.0% | |
| CGATCTCAACAAGCTTCAAA+AGG | + | chr5.1:43635259-43635278 | MS.gene65355:CDS | 40.0% | |
| CTGTAAAGAAGGAAACACAG+CGG | + | chr5.1:43637444-43637463 | MS.gene65355:intron | 40.0% | |
| CTTCAATTGGATTCTGCTAG+TGG | + | chr5.1:43635551-43635570 | MS.gene65355:intron | 40.0% | |
| CTTTATATAGCAGACCGAGA+AGG | - | chr5.1:43637028-43637047 | None:intergenic | 40.0% | |
| GACTAGAACCTATAACAAGG+AGG | + | chr5.1:43636896-43636915 | MS.gene65355:intron | 40.0% | |
| GAGAAGTTGGACATAAGTAG+AGG | + | chr5.1:43637726-43637745 | MS.gene65355:intron | 40.0% | |
| GATGCTACCAAAGAAAACAG+AGG | - | chr5.1:43637312-43637331 | None:intergenic | 40.0% | |
| GCATAAGAAGTAGGAATGAG+CGG | - | chr5.1:43637650-43637669 | None:intergenic | 40.0% | |
| GCGTTGAAGATCTCTAATGT+TGG | - | chr5.1:43635219-43635238 | None:intergenic | 40.0% | |
| GGAATTGAAACCATATGGCA+GGG | - | chr5.1:43637629-43637648 | None:intergenic | 40.0% | |
| GGTATGAACTGACCCTAAAA+GGG | - | chr5.1:43635517-43635536 | None:intergenic | 40.0% | |
| GTAGGGGGAACTCTAATATA+AGG | - | chr5.1:43637577-43637596 | None:intergenic | 40.0% | |
| GTCCATACAAAGCTTTGCTT+TGG | + | chr5.1:43638641-43638660 | MS.gene65355:intron | 40.0% | |
| TAGAGATCTTCAACGCGAAT+TGG | + | chr5.1:43635223-43635242 | MS.gene65355:CDS | 40.0% | |
| TCTCTTGCGAACATTTGCAT+TGG | - | chr5.1:43635951-43635970 | None:intergenic | 40.0% | |
| TGAGCGGAATTGAAACCATA+TGG | - | chr5.1:43637634-43637653 | None:intergenic | 40.0% | |
| TGATTTGATTCATCTGGCAC+GGG | + | chr5.1:43636113-43636132 | MS.gene65355:intron | 40.0% | |
| TGGTTTATGTTGGGAGAAGT+TGG | + | chr5.1:43637713-43637732 | MS.gene65355:intron | 40.0% | |
| TGTGTGCGATTAGACATACT+GGG | + | chr5.1:43637145-43637164 | MS.gene65355:intron | 40.0% | |
| TGTTAAGCAAGATTTGGCTG+AGG | + | chr5.1:43635925-43635944 | MS.gene65355:CDS | 40.0% | |
| TTCGGATGCATTGTACACAT+CGG | - | chr5.1:43638956-43638975 | None:intergenic | 40.0% | |
| TTCTTGCAAATCTTGCGGTT+CGG | + | chr5.1:43637367-43637386 | MS.gene65355:intron | 40.0% | |
| ! | ACAAGGTTTTGCAGAATCAC+TGG | - | chr5.1:43638081-43638100 | None:intergenic | 40.0% |
| ! | AGCCAAAGCAAAGCTTTGTA+TGG | - | chr5.1:43638646-43638665 | None:intergenic | 40.0% |
| ! | CAAATTCTTTTGACATGGCC+AGG | + | chr5.1:43638409-43638428 | MS.gene65355:intron | 40.0% |
| ! | GAAGATTTCATCGAGTATCG+AGG | + | chr5.1:43638867-43638886 | MS.gene65355:intron | 40.0% |
| ! | GGATGGTTTGCATAAGAAGT+AGG | - | chr5.1:43637659-43637678 | None:intergenic | 40.0% |
| !! | AAAGTTGGTTCGATTCCCTT+TGG | + | chr5.1:43638600-43638619 | MS.gene65355:intron | 40.0% |
| !! | AACAAAGATCAAGAGGTGTC+AGG | - | chr5.1:43638133-43638152 | None:intergenic | 40.0% |
| !! | AGCTTTGTTCTGGCTTCAAT+TGG | + | chr5.1:43635538-43635557 | MS.gene65355:intron | 40.0% |
| !! | AGTGGCTCTGGTAAAAGAAA+TGG | - | chr5.1:43637282-43637301 | None:intergenic | 40.0% |
| !! | CCAAATGTTGACTTGTGTTG+AGG | + | chr5.1:43636637-43636656 | MS.gene65355:intron | 40.0% |
| !! | CTTTGCTTTGGCTTTAAACG+GGG | + | chr5.1:43638653-43638672 | MS.gene65355:intron | 40.0% |
| !! | GCTTTGCTTTGGCTTTAAAC+GGG | + | chr5.1:43638652-43638671 | MS.gene65355:intron | 40.0% |
| !! | GGATTAGTCGGTTCTTTGAT+CGG | + | chr5.1:43638709-43638728 | MS.gene65355:intron | 40.0% |
| !! | TCTCGGATTAGTTGGTCTTT+GGG | + | chr5.1:43635589-43635608 | MS.gene65355:intron | 40.0% |
| !! | TTGACTTGTGTTGAGGAGTT+TGG | + | chr5.1:43636644-43636663 | MS.gene65355:intron | 40.0% |
| !!! | CTAGTTTTACCCATGTTGAG+TGG | + | chr5.1:43636859-43636878 | MS.gene65355:intron | 40.0% |
| !!! | CTTGTTTTTTAGTCGGGCTT+GGG | - | chr5.1:43638352-43638371 | None:intergenic | 40.0% |
| AAACCTTCTGGGTCAGTCAA+AGG | + | chr5.1:43637752-43637771 | MS.gene65355:intron | 45.0% | |
| AAAGAACCGACTAATCCGAG+GGG | - | chr5.1:43638706-43638725 | None:intergenic | 45.0% | |
| AAATTCCTACTGCCAGAGCT+AGG | + | chr5.1:43637472-43637491 | MS.gene65355:intron | 45.0% | |
| AACCATCCACATATTGGGCA+TGG | + | chr5.1:43637671-43637690 | MS.gene65355:intron | 45.0% | |
| AACCGAACAACCACTCAACA+TGG | - | chr5.1:43636872-43636891 | None:intergenic | 45.0% | |
| ACAGCAAGGTTACTGCCATA+AGG | - | chr5.1:43636922-43636941 | None:intergenic | 45.0% | |
| ACCAAAGAAAACAGAGGCCA+GGG | - | chr5.1:43637306-43637325 | None:intergenic | 45.0% | |
| ACCCATGTTGAGTGGTTGTT+CGG | + | chr5.1:43636867-43636886 | MS.gene65355:intron | 45.0% | |
| ACCGAACAACCACTCAACAT+GGG | - | chr5.1:43636871-43636890 | None:intergenic | 45.0% | |
| ACTGAAGGAAAGAACAGGCT+TGG | - | chr5.1:43637195-43637214 | None:intergenic | 45.0% | |
| AGAAGGGTTAGAGAACTGCA+AGG | + | chr5.1:43637787-43637806 | MS.gene65355:intron | 45.0% | |
| AGAGTAAATTGGCAGGGAAC+AGG | - | chr5.1:43637919-43637938 | None:intergenic | 45.0% | |
| ATGCAGCAATCTGTTCGAAG+TGG | - | chr5.1:43639238-43639257 | None:intergenic | 45.0% | |
| CAAAGAACCGACTAATCCGA+GGG | - | chr5.1:43638707-43638726 | None:intergenic | 45.0% | |
| CAATGAGGGGAAGAACAACA+AGG | - | chr5.1:43638459-43638478 | None:intergenic | 45.0% | |
| CATTCCGAGCTCTCAATACT+TGG | + | chr5.1:43639060-43639079 | MS.gene65355:intron | 45.0% | |
| CCAAGCCCGACTAAAAAACA+AGG | + | chr5.1:43638350-43638369 | MS.gene65355:intron | 45.0% | |
| CCTATAACAAGGAGGCCTTA+TGG | + | chr5.1:43636904-43636923 | MS.gene65355:intron | 45.0% | |
| CGAGCTCTCAATACTTGGAA+GGG | + | chr5.1:43639065-43639084 | MS.gene65355:intron | 45.0% | |
| CGGAATTGAAACCATATGGC+AGG | - | chr5.1:43637630-43637649 | None:intergenic | 45.0% | |
| CGGTATGAACTGACCCTAAA+AGG | - | chr5.1:43635518-43635537 | None:intergenic | 45.0% | |
| CTCTTCCAAATCTTGAACCG+TGG | - | chr5.1:43639405-43639424 | None:intergenic | 45.0% | |
| GAACCGCAAGATTTGCAAGA+AGG | - | chr5.1:43637368-43637387 | None:intergenic | 45.0% | |
| GAAGGGTTAGAGAACTGCAA+GGG | + | chr5.1:43637788-43637807 | MS.gene65355:intron | 45.0% | |
| GAGGAGTTTGGATAGTGTGT+AGG | + | chr5.1:43636656-43636675 | MS.gene65355:intron | 45.0% | |
| GGGTACCTTAAGAACAAGCT+TGG | - | chr5.1:43635497-43635516 | None:intergenic | 45.0% | |
| GTTTCTTCGTCAGCACATTG+AGG | - | chr5.1:43637340-43637359 | None:intergenic | 45.0% | |
| TACCAAAGAAAACAGAGGCC+AGG | - | chr5.1:43637307-43637326 | None:intergenic | 45.0% | |
| TATGGACTTGCCCACGAAAT+TGG | - | chr5.1:43638628-43638647 | None:intergenic | 45.0% | |
| TCAAAGAACCGACTAATCCG+AGG | - | chr5.1:43638708-43638727 | None:intergenic | 45.0% | |
| TGATGCCACGGTTCAAGATT+TGG | + | chr5.1:43639397-43639416 | MS.gene65355:CDS | 45.0% | |
| TTATACGGTCTCTGTGTGTC+AGG | + | chr5.1:43639366-43639385 | MS.gene65355:intron | 45.0% | |
| ! | AGGATAGATGTTGGTTAGCG+TGG | - | chr5.1:43638439-43638458 | None:intergenic | 45.0% |
| ! | CCATAAGGCCTCCTTGTTAT+AGG | - | chr5.1:43636907-43636926 | None:intergenic | 45.0% |
| !! | CAAGTATTGAGAGCTCGGAA+TGG | - | chr5.1:43639062-43639081 | None:intergenic | 45.0% |
| !! | CCTTCCAAGTATTGAGAGCT+CGG | - | chr5.1:43639067-43639086 | None:intergenic | 45.0% |
| !! | CTCTCGGATTAGTTGGTCTT+TGG | + | chr5.1:43635588-43635607 | MS.gene65355:intron | 45.0% |
| !! | GATTGGTCTCTCGGATTAGT+TGG | + | chr5.1:43635581-43635600 | MS.gene65355:intron | 45.0% |
| !! | GTTCATACCGAGCTTTGTTC+TGG | + | chr5.1:43635528-43635547 | MS.gene65355:intron | 45.0% |
| !!! | CCTTGTTTTTTAGTCGGGCT+TGG | - | chr5.1:43638353-43638372 | None:intergenic | 45.0% |
| !! | ATTATTATTATTATCTTATA+CGG | + | chr5.1:43639351-43639370 | MS.gene65355:intron | 5.0% |
| AGCAGCCGATTGAACCTTCT+CGG | + | chr5.1:43637011-43637030 | MS.gene65355:intron | 50.0% | |
| AGCCATGCCCAATATGTGGA+TGG | - | chr5.1:43637676-43637695 | None:intergenic | 50.0% | |
| CCCACGAAATTGGCACCAAA+GGG | - | chr5.1:43638618-43638637 | None:intergenic | 50.0% | |
| CCGAGCTCTCAATACTTGGA+AGG | + | chr5.1:43639064-43639083 | MS.gene65355:intron | 50.0% | |
| CGCGATGAGAGTCAATCTGA+TGG | + | chr5.1:43637253-43637272 | MS.gene65355:intron | 50.0% | |
| CTTCCTTTGACTGACCCAGA+AGG | - | chr5.1:43637758-43637777 | None:intergenic | 50.0% | |
| GACAGCGCCATCACACATTT+AGG | + | chr5.1:43635773-43635792 | MS.gene65355:intron | 50.0% | |
| GCAGACCGAGAAGGTTCAAT+CGG | - | chr5.1:43637019-43637038 | None:intergenic | 50.0% | |
| GTGCGATTAGACATACTGGG+AGG | + | chr5.1:43637148-43637167 | MS.gene65355:intron | 50.0% | |
| ! | ACCCTGGCCTCTGTTTTCTT+TGG | + | chr5.1:43637302-43637321 | MS.gene65355:intron | 50.0% |
| ! | CTGCTAGTGGACAGTTGGAT+TGG | + | chr5.1:43635564-43635583 | MS.gene65355:intron | 50.0% |
| ! | GGATTCTGCTAGTGGACAGT+TGG | + | chr5.1:43635559-43635578 | MS.gene65355:intron | 50.0% |
| ! | GGTGCTGAGAAGAGAGAGAA+AGG | - | chr5.1:43637555-43637574 | None:intergenic | 50.0% |
| ! | GGTTTTGCAGAATCACTGGC+TGG | - | chr5.1:43638077-43638096 | None:intergenic | 50.0% |
| ! | TCTCTAAAGGAGCCTAGCTC+TGG | - | chr5.1:43637487-43637506 | None:intergenic | 50.0% |
| ! | TTTTACCAGAGCCACTACCC+TGG | + | chr5.1:43637286-43637305 | MS.gene65355:intron | 50.0% |
| !! | AGATCAAGAGGTGTCAGGAC+AGG | - | chr5.1:43638128-43638147 | None:intergenic | 50.0% |
| !! | ATTGGTCCCCTCGGATTAGT+CGG | + | chr5.1:43638697-43638716 | MS.gene65355:intron | 50.0% |
| !! | CCCTTTGGTGCCAATTTCGT+GGG | + | chr5.1:43638615-43638634 | MS.gene65355:intron | 50.0% |
| !! | GGACAGTTGGATTGGTCTCT+CGG | + | chr5.1:43635572-43635591 | MS.gene65355:intron | 50.0% |
| !! | GGATTAGTTGGTCTTTGGGC+CGG | + | chr5.1:43635593-43635612 | MS.gene65355:intron | 50.0% |
| !! | TCCCTTTGGTGCCAATTTCG+TGG | + | chr5.1:43638614-43638633 | MS.gene65355:intron | 50.0% |
| AATTCCACCGCCCACTTGCA+GGG | - | chr5.1:43638680-43638699 | None:intergenic | 55.0% | |
| CAGCAGCCATGCCCAATATG+TGG | - | chr5.1:43637680-43637699 | None:intergenic | 55.0% | |
| GAAAACAGAGGCCAGGGTAG+TGG | - | chr5.1:43637300-43637319 | None:intergenic | 55.0% | |
| GAAACCATATGGCAGGGCCA+GGG | - | chr5.1:43637623-43637642 | None:intergenic | 55.0% | |
| GCCCACGAAATTGGCACCAA+AGG | - | chr5.1:43638619-43638638 | None:intergenic | 55.0% | |
| TGAAACCATATGGCAGGGCC+AGG | - | chr5.1:43637624-43637643 | None:intergenic | 55.0% | |
| !! | CAGGAAGCGTCTTGATGCCA+CGG | + | chr5.1:43639385-43639404 | MS.gene65355:intron | 55.0% |
| AAGAGGGGAGCGGACACTGT+AGG | - | chr5.1:43637595-43637614 | None:intergenic | 60.0% | |
| AGAGGGGAGCGGACACTGTA+GGG | - | chr5.1:43637594-43637613 | None:intergenic | 60.0% | |
| ATTCCACCGCCCACTTGCAG+GGG | - | chr5.1:43638679-43638698 | None:intergenic | 60.0% | |
| CAATTCCACCGCCCACTTGC+AGG | - | chr5.1:43638681-43638700 | None:intergenic | 60.0% | |
| CTGCAAGTGGGCGGTGGAAT+TGG | + | chr5.1:43638679-43638698 | MS.gene65355:intron | 60.0% | |
| GCTGCTGCTCCCTGTTAGTG+TGG | + | chr5.1:43637693-43637712 | MS.gene65355:intron | 60.0% | |
| GTTGGTTAGCGTGGTGTGCC+TGG | - | chr5.1:43638430-43638449 | None:intergenic | 60.0% | |
| TAAACGGGGCCCCTGCAAGT+GGG | + | chr5.1:43638667-43638686 | MS.gene65355:intron | 60.0% | |
| TTAAACGGGGCCCCTGCAAG+TGG | + | chr5.1:43638666-43638685 | MS.gene65355:intron | 60.0% | |
| ! | AGGGCCAGGGAGTGTAAGAG+GGG | - | chr5.1:43637610-43637629 | None:intergenic | 60.0% |
| ! | CAGGGAGTGTAAGAGGGGAG+CGG | - | chr5.1:43637605-43637624 | None:intergenic | 60.0% |
| ! | CAGGGCCAGGGAGTGTAAGA+GGG | - | chr5.1:43637611-43637630 | None:intergenic | 60.0% |
| !! | AGGAGCCTAGCTCTGGCAGT+AGG | - | chr5.1:43637480-43637499 | None:intergenic | 60.0% |
| AGGGGAGCGGACACTGTAGG+GGG | - | chr5.1:43637592-43637611 | None:intergenic | 65.0% | |
| CACTCCCTGGCCCTGCCATA+TGG | + | chr5.1:43637616-43637635 | MS.gene65355:intron | 65.0% | |
| CGCTCCCCTCTTACACTCCC+TGG | + | chr5.1:43637603-43637622 | MS.gene65355:intron | 65.0% | |
| GAGGGGAGCGGACACTGTAG+GGG | - | chr5.1:43637593-43637612 | None:intergenic | 65.0% | |
| GGCGGTGGAATTGGTCCCCT+CGG | + | chr5.1:43638688-43638707 | MS.gene65355:intron | 65.0% | |
| ! | AGAGGCCAGGGTAGTGGCTC+TGG | - | chr5.1:43637294-43637313 | None:intergenic | 65.0% |
| ! | GCAGGGCCAGGGAGTGTAAG+AGG | - | chr5.1:43637612-43637631 | None:intergenic | 65.0% |
| ACGGGGCCCCTGCAAGTGGG+CGG | + | chr5.1:43638670-43638689 | MS.gene65355:intron | 75.0% | |
| ! | GGGCCCCTGCAAGTGGGCGG+TGG | + | chr5.1:43638673-43638692 | MS.gene65355:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 43635206 | 43639448 | 43635206 | ID=MS.gene65355 |
| chr5.1 | mRNA | 43635206 | 43639448 | 43635206 | ID=MS.gene65355.t1;Parent=MS.gene65355 |
| chr5.1 | exon | 43635206 | 43635281 | 43635206 | ID=MS.gene65355.t1.exon1;Parent=MS.gene65355.t1 |
| chr5.1 | CDS | 43635206 | 43635281 | 43635206 | ID=cds.MS.gene65355.t1;Parent=MS.gene65355.t1 |
| chr5.1 | exon | 43635377 | 43635447 | 43635377 | ID=MS.gene65355.t1.exon2;Parent=MS.gene65355.t1 |
| chr5.1 | CDS | 43635377 | 43635447 | 43635377 | ID=cds.MS.gene65355.t1;Parent=MS.gene65355.t1 |
| chr5.1 | exon | 43635869 | 43635993 | 43635869 | ID=MS.gene65355.t1.exon3;Parent=MS.gene65355.t1 |
| chr5.1 | CDS | 43635869 | 43635993 | 43635869 | ID=cds.MS.gene65355.t1;Parent=MS.gene65355.t1 |
| chr5.1 | exon | 43639388 | 43639448 | 43639388 | ID=MS.gene65355.t1.exon4;Parent=MS.gene65355.t1 |
| chr5.1 | CDS | 43639388 | 43639448 | 43639388 | ID=cds.MS.gene65355.t1;Parent=MS.gene65355.t1 |
| Gene Sequence |
| Protein sequence |
