Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65454.t1 | XP_013467067.1 | 86.1 | 1109 | 153 | 1 | 1 | 1108 | 1 | 1109 | 0.00E+00 | 1483 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65454.t1 | P26368 | 31.6 | 380 | 214 | 9 | 512 | 872 | 67 | 419 | 7.9e-35 | 151.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65454.t1 | A0A072VGZ7 | 86.1 | 1109 | 153 | 1 | 1 | 1108 | 1 | 1109 | 0.0e+00 | 1483.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049300 | MS.gene65454 | 0.801424 | 9.07E-49 | -1.69E-46 |
MS.gene053351 | MS.gene65454 | 0.907235 | 6.31E-81 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65454.t1 | MTR_1g041735 | 95.041 | 1109 | 54 | 1 | 1 | 1108 | 1 | 1109 | 0.0 | 2004 |
MS.gene65454.t1 | MTR_1g041735 | 95.238 | 1071 | 50 | 1 | 39 | 1108 | 1 | 1071 | 0.0 | 1928 |
MS.gene65454.t1 | MTR_1g041735 | 95.215 | 836 | 39 | 1 | 1 | 835 | 1 | 836 | 0.0 | 1489 |
MS.gene65454.t1 | MTR_1g041735 | 95.023 | 663 | 33 | 0 | 446 | 1108 | 289 | 951 | 0.0 | 1270 |
MS.gene65454.t1 | MTR_1g041735 | 92.308 | 338 | 26 | 0 | 39 | 376 | 1 | 338 | 5.70e-179 | 549 |
MS.gene65454.t1 | MTR_3g005670 | 28.212 | 358 | 224 | 10 | 552 | 880 | 223 | 576 | 5.99e-32 | 133 |
MS.gene65454.t1 | MTR_3g005670 | 27.500 | 360 | 222 | 10 | 552 | 880 | 223 | 574 | 6.55e-32 | 133 |
MS.gene65454.t1 | MTR_3g005670 | 28.291 | 357 | 223 | 10 | 552 | 879 | 223 | 575 | 9.16e-32 | 133 |
MS.gene65454.t1 | MTR_3g005670 | 27.577 | 359 | 221 | 10 | 552 | 879 | 223 | 573 | 1.26e-31 | 132 |
MS.gene65454.t1 | MTR_3g005670 | 28.571 | 343 | 212 | 10 | 552 | 865 | 223 | 561 | 4.94e-31 | 130 |
MS.gene65454.t1 | MTR_3g005670 | 28.212 | 358 | 224 | 10 | 552 | 880 | 223 | 576 | 3.70e-30 | 128 |
MS.gene65454.t1 | MTR_3g005670 | 27.500 | 360 | 222 | 10 | 552 | 880 | 223 | 574 | 4.52e-30 | 127 |
MS.gene65454.t1 | MTR_4g031680 | 28.532 | 361 | 215 | 11 | 553 | 880 | 174 | 524 | 7.73e-29 | 123 |
MS.gene65454.t1 | MTR_2g013130 | 27.978 | 361 | 209 | 11 | 564 | 886 | 116 | 463 | 1.83e-28 | 121 |
MS.gene65454.t1 | MTR_2g013130 | 26.650 | 394 | 221 | 13 | 532 | 886 | 114 | 478 | 2.15e-26 | 115 |
MS.gene65454.t1 | MTR_2g013130 | 28.526 | 312 | 177 | 8 | 606 | 881 | 9 | 310 | 2.48e-26 | 112 |
MS.gene65454.t1 | MTR_2g013130 | 28.931 | 318 | 178 | 9 | 606 | 886 | 52 | 358 | 2.58e-23 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65454.t1 | AT2G33435 | 49.545 | 440 | 207 | 7 | 440 | 873 | 710 | 1140 | 2.56e-122 | 407 |
MS.gene65454.t1 | AT1G60900 | 27.401 | 354 | 202 | 9 | 606 | 933 | 249 | 573 | 2.67e-25 | 112 |
MS.gene65454.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 211 | 493 | 5.35e-25 | 111 |
MS.gene65454.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 233 | 515 | 5.88e-25 | 111 |
MS.gene65454.t1 | AT4G36690 | 28.929 | 280 | 171 | 7 | 606 | 863 | 233 | 506 | 3.77e-23 | 105 |
MS.gene65454.t1 | AT4G36690 | 28.674 | 279 | 171 | 7 | 606 | 862 | 233 | 505 | 1.63e-22 | 103 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTCCTTAATGTCCTTTC+TGG | 0.074338 | 1.1:+25727071 | None:intergenic |
AGCAAATTCAACATAGTCTT+TGG | 0.212667 | 1.1:+25734012 | None:intergenic |
TTTGATGGCAGTAAACTATT+TGG | 0.213603 | 1.1:-25734058 | MS.gene65454:CDS |
CACGGGAATCGAAGAAATTT+TGG | 0.222977 | 1.1:-25727745 | MS.gene65454:CDS |
TAAGATTCCATCCTTTAAAA+TGG | 0.236439 | 1.1:-25735929 | MS.gene65454:CDS |
ACTCTAGCTCCTATTTCTTC+TGG | 0.240152 | 1.1:-25734539 | MS.gene65454:CDS |
TCTTGACCGTCTCCTCTTCA+TGG | 0.255384 | 1.1:+25735252 | None:intergenic |
TTATGATGTTTATAGATTCT+TGG | 0.260739 | 1.1:+25735949 | None:intergenic |
TCAGCTGCTCTTTCCTTTGA+TGG | 0.264569 | 1.1:-25734073 | MS.gene65454:CDS |
ATGGAGATTGCTGGTGTCTT+TGG | 0.275434 | 1.1:-25730364 | MS.gene65454:CDS |
TTTGCAGGCATACCTTGTTT+GGG | 0.293827 | 1.1:+25732528 | None:intergenic |
AGCAGTGGCTTTGCATGCTC+TGG | 0.328489 | 1.1:+25728806 | None:intergenic |
TCCACCTGTTCCATTAGAAT+TGG | 0.334954 | 1.1:+25727443 | None:intergenic |
TTCTCTGGAGAATGCTTAGA+TGG | 0.340468 | 1.1:+25734605 | None:intergenic |
CATCCAGCACGTTTCTTCTC+TGG | 0.343040 | 1.1:+25734590 | None:intergenic |
ATAATCTCTTCAAAACTAAA+TGG | 0.343513 | 1.1:+25736084 | None:intergenic |
AAACACGGTTCGTCCATTTC+AGG | 0.343902 | 1.1:-25727136 | MS.gene65454:CDS |
AATTCAAAACCAGAAGAAAT+AGG | 0.349700 | 1.1:+25734530 | None:intergenic |
ATTTAATCCAGCACTTGATT+TGG | 0.353132 | 1.1:+25735789 | None:intergenic |
GGAAGTATTAACAGTTGTTC+AGG | 0.353180 | 1.1:-25729015 | MS.gene65454:CDS |
GATAGTAAACCACCATCTTA+TGG | 0.353960 | 1.1:-25728833 | MS.gene65454:CDS |
TGGTGTCTTTGGATCTTTGA+AGG | 0.354415 | 1.1:-25730353 | MS.gene65454:CDS |
CTCGGGAGCGTGAGGATAGA+AGG | 0.359509 | 1.1:-25734871 | MS.gene65454:CDS |
CCAGAAAAGCCCTCCTGAAA+TGG | 0.361049 | 1.1:+25727123 | None:intergenic |
TCAAGATAAACCCTTCTCAT+AGG | 0.365121 | 1.1:+25734350 | None:intergenic |
TGGTTCCAGAAAGGACATTA+AGG | 0.366182 | 1.1:-25727076 | MS.gene65454:CDS |
GGAACCAACTAATTCTAAAC+TGG | 0.370521 | 1.1:+25727092 | None:intergenic |
GCTTGCAGGTGCATAAAGAT+AGG | 0.374950 | 1.1:-25734135 | MS.gene65454:intron |
AATTTCAAATCTCGTTTCTT+CGG | 0.377106 | 1.1:-25730544 | MS.gene65454:CDS |
ATTATTGTCCTTGCAATGTC+TGG | 0.382246 | 1.1:+25727581 | None:intergenic |
AGTGCTGGATTAAATAATAA+AGG | 0.387810 | 1.1:-25735781 | MS.gene65454:CDS |
GCAGAGGGTAGAGCAAAATA+TGG | 0.393597 | 1.1:-25735460 | MS.gene65454:CDS |
TGCCCTTGGTGAAAGAGAAC+GGG | 0.395787 | 1.1:+25735201 | None:intergenic |
GTTGTCCAGCATGCATGATT+TGG | 0.407879 | 1.1:-25734492 | MS.gene65454:CDS |
GAGTTGCTTGAAAATGTAAA+AGG | 0.412364 | 1.1:-25736042 | MS.gene65454:CDS |
TGTAACTCTGGATCATCATT+AGG | 0.413072 | 1.1:+25727222 | None:intergenic |
GCTACTTACTCCAATTCTAA+TGG | 0.413366 | 1.1:-25727453 | MS.gene65454:CDS |
CAACTAATGGTTCAAGTAGA+AGG | 0.416034 | 1.1:-25734901 | MS.gene65454:CDS |
TTTGAAGGCTTACCACTTTG+AGG | 0.418380 | 1.1:-25730338 | MS.gene65454:CDS |
ACGAAAGATGATTTAATTGA+AGG | 0.421610 | 1.1:-25735841 | MS.gene65454:CDS |
GACCGTCTCCTCTTCATGGT+TGG | 0.425429 | 1.1:+25735256 | None:intergenic |
AGAGGGACGAAAGAAGTAAT+TGG | 0.426732 | 1.1:-25736152 | MS.gene65454:CDS |
GCAAATTCAACATAGTCTTT+GGG | 0.428057 | 1.1:+25734013 | None:intergenic |
CTCTGAGTCTATACAGAGAA+AGG | 0.429603 | 1.1:-25726900 | MS.gene65454:CDS |
AATAACCTCTTGCTTTCTTC+CGG | 0.430687 | 1.1:-25734281 | MS.gene65454:CDS |
TTAGTAACAGTGTGTGTGTC+TGG | 0.432948 | 1.1:+25727504 | None:intergenic |
AGTAGCCCTGCTAGTGGACT+TGG | 0.433461 | 1.1:-25734680 | MS.gene65454:CDS |
TTATTCCACGCTTCCTTAGC+AGG | 0.433488 | 1.1:+25736018 | None:intergenic |
AGCTGCTGATCGACATGCTT+CGG | 0.433768 | 1.1:+25726978 | None:intergenic |
CATTCAAGGATGTCCTGATC+AGG | 0.436067 | 1.1:-25727253 | MS.gene65454:CDS |
TACTCCAATTCTAATGGAAC+AGG | 0.440761 | 1.1:-25727447 | MS.gene65454:CDS |
TATAATCATTTATTTGAAGA+AGG | 0.442018 | 1.1:-25727027 | MS.gene65454:CDS |
GGCACATAGAAAGACTTATC+AGG | 0.444800 | 1.1:-25734825 | MS.gene65454:CDS |
GGCCACATGAATTGATTTAA+CGG | 0.449065 | 1.1:+25727602 | None:intergenic |
CAACTAATGGTTCAAGTAGA+AGG | 0.449247 | 1.1:-25735078 | MS.gene65454:CDS |
GGATGGGATCTTCCTCCTGT+AGG | 0.450661 | 1.1:-25734572 | MS.gene65454:CDS |
AAAGCTTGTGCGGGTTTGAA+TGG | 0.460255 | 1.1:-25729053 | MS.gene65454:CDS |
CTTGCAGGTGCATAAAGATA+GGG | 0.463742 | 1.1:-25734134 | MS.gene65454:intron |
CAAAGAGCCAACACAAGTAC+TGG | 0.466512 | 1.1:-25728783 | MS.gene65454:CDS |
GATGCCAGTTTAGAATTAGT+TGG | 0.467941 | 1.1:-25727096 | MS.gene65454:CDS |
TTGCCTAGTAGTACCATTCA+AGG | 0.469110 | 1.1:-25727267 | MS.gene65454:CDS |
TTCTTCCTCTCATAAATGTG+TGG | 0.472735 | 1.1:+25735313 | None:intergenic |
TCCCTCTCCTTCAAACAGTC+AGG | 0.473777 | 1.1:+25736168 | None:intergenic |
GGGTTTGAATGGTATGAGCC+TGG | 0.474594 | 1.1:-25729042 | MS.gene65454:CDS |
GATGGGATCTTCCTCCTGTA+GGG | 0.475215 | 1.1:-25734571 | MS.gene65454:CDS |
TTGCATAGACGTCTCTTTGA+CGG | 0.476927 | 1.1:-25726949 | MS.gene65454:CDS |
GAGCAGACCTGACTGTTTGA+AGG | 0.477729 | 1.1:-25736175 | MS.gene65454:CDS |
TGATACATGGCCGAGTTTGT+TGG | 0.482730 | 1.1:+25734246 | None:intergenic |
TTAGGTGTATTCCCCTGATC+AGG | 0.484350 | 1.1:+25727240 | None:intergenic |
ATATGGAAGAGAAATCAATA+AGG | 0.485629 | 1.1:-25735443 | MS.gene65454:CDS |
CTGGATTAAATAATAAAGGC+TGG | 0.488033 | 1.1:-25735777 | MS.gene65454:CDS |
ATGGTTGGTTCTTCATAATG+TGG | 0.491501 | 1.1:+25735271 | None:intergenic |
GAATGTAAGTTCTAGAAAGA+AGG | 0.491771 | 1.1:-25735881 | MS.gene65454:CDS |
AAATCTCGTTTCTTCGGAGA+TGG | 0.491853 | 1.1:-25730538 | MS.gene65454:intron |
GCAACTTCCACTGATCTCTC+TGG | 0.493226 | 1.1:+25732581 | None:intergenic |
TTAATCTCCAGTACTTGTGT+TGG | 0.494093 | 1.1:+25728776 | None:intergenic |
CATCCTTGAATGGTACTACT+AGG | 0.494514 | 1.1:+25727264 | None:intergenic |
ACATTTATGAGAGGAAGAAC+AGG | 0.495873 | 1.1:-25735309 | MS.gene65454:CDS |
CGAAAGATGATTTAATTGAA+GGG | 0.497973 | 1.1:-25735840 | MS.gene65454:CDS |
TTAGAAACCAAATCAAGTGC+TGG | 0.498284 | 1.1:-25735796 | MS.gene65454:CDS |
GAGGAGACGGTCAAGAAGTC+GGG | 0.498705 | 1.1:-25735245 | MS.gene65454:CDS |
TTGCAGGCATACCTTGTTTG+GGG | 0.500090 | 1.1:+25732529 | None:intergenic |
TAAGTCTTTCTATGTGCCCT+TGG | 0.500562 | 1.1:+25734830 | None:intergenic |
TAGCCACCAAGTCCACTAGC+AGG | 0.501332 | 1.1:+25734674 | None:intergenic |
GGCTTACCACTTTGAGGCAA+GGG | 0.501487 | 1.1:-25730332 | MS.gene65454:CDS |
CTGATGCATCCTCAGCTGTA+AGG | 0.502308 | 1.1:+25734092 | None:intergenic |
CTTACAATGCAGCTGATACA+TGG | 0.502363 | 1.1:+25734233 | None:intergenic |
CATGGCAAAGATAGACATGA+TGG | 0.505567 | 1.1:-25735568 | MS.gene65454:CDS |
GAGGAAGAACAGGCAGGAAA+AGG | 0.507384 | 1.1:-25735299 | MS.gene65454:CDS |
AGAGTAGGATCTGTCCCTAC+AGG | 0.512461 | 1.1:+25734557 | None:intergenic |
TTCTAATGGAACAGGTGGAA+TGG | 0.513933 | 1.1:-25727439 | MS.gene65454:CDS |
GAAGAAAAGACAAGAGAAGA+GGG | 0.514626 | 1.1:-25735748 | MS.gene65454:CDS |
TAAGTATTTCTGTTTGCCCT+TGG | 0.515292 | 1.1:+25735187 | None:intergenic |
AACAGAAATACTTATCAAGA+TGG | 0.516221 | 1.1:-25735178 | MS.gene65454:CDS |
CAAGTAGAAGGTCAAGAACT+CGG | 0.519124 | 1.1:-25734889 | MS.gene65454:CDS |
GGTAGAGGCTTCACGATGGA+TGG | 0.524088 | 1.1:+25734449 | None:intergenic |
CAAGATAAACCCTTCTCATA+GGG | 0.524873 | 1.1:+25734351 | None:intergenic |
AGAGAAGAAACGTGCTGGAT+GGG | 0.525166 | 1.1:-25734588 | MS.gene65454:CDS |
AGCCTCTGAGAAAGTTGTGA+TGG | 0.525404 | 1.1:-25734312 | MS.gene65454:CDS |
AGAATTAGTTGGTTCCAGAA+AGG | 0.525428 | 1.1:-25727085 | MS.gene65454:CDS |
GAATGGTATGAGCCTGGGAG+GGG | 0.529449 | 1.1:-25729036 | MS.gene65454:CDS |
AGCCCTGCTAGTGGACTTGG+TGG | 0.529522 | 1.1:-25734677 | MS.gene65454:CDS |
GATTCTCTTCCTCTTCATTG+TGG | 0.530005 | 1.1:+25735617 | None:intergenic |
GGCGGGTAGCATGTGTCAGT+TGG | 0.535324 | 1.1:+25734372 | None:intergenic |
GTTACTATCAAAGCTTGTGC+GGG | 0.537008 | 1.1:-25729062 | MS.gene65454:CDS |
TCTTCCTCTCATAAATGTGT+GGG | 0.537581 | 1.1:+25735314 | None:intergenic |
CAGAGAAGAAACGTGCTGGA+TGG | 0.538719 | 1.1:-25734589 | MS.gene65454:CDS |
CATTAAGGAAGAAGATGAGG+AGG | 0.538929 | 1.1:-25727061 | MS.gene65454:CDS |
TGAATCTAGTTTCTCTGAAG+AGG | 0.539721 | 1.1:-25727475 | MS.gene65454:CDS |
TTGCCCTTGGTGAAAGAGAA+CGG | 0.541173 | 1.1:+25735200 | None:intergenic |
TAAGGAATTCCACAAGCGCT+TGG | 0.541301 | 1.1:+25734110 | None:intergenic |
GGACATTAAGGAAGAAGATG+AGG | 0.547317 | 1.1:-25727064 | MS.gene65454:CDS |
GACCTGACTGTTTGAAGGAG+AGG | 0.547655 | 1.1:-25736170 | MS.gene65454:CDS |
CTTACCACAGGTGATGCATC+AGG | 0.548034 | 1.1:+25728987 | None:intergenic |
CACAGAAAAGCTTATCAAGA+TGG | 0.548916 | 1.1:-25734998 | MS.gene65454:CDS |
ATTCAAGGATGTCCTGATCA+GGG | 0.549232 | 1.1:-25727252 | MS.gene65454:CDS |
GTGGCTATTCACCAAGGAAG+AGG | 0.549747 | 1.1:-25734658 | MS.gene65454:CDS |
CTGATCAGGACATCCTTGAA+TGG | 0.551575 | 1.1:+25727254 | None:intergenic |
AGATAGGGGCCAAGCGCTTG+TGG | 0.552388 | 1.1:-25734119 | MS.gene65454:CDS |
TCCAATTCTAATGGAACAGG+TGG | 0.553137 | 1.1:-25727444 | MS.gene65454:CDS |
TCTCCAGAGAAGAAACGTGC+TGG | 0.557279 | 1.1:-25734593 | MS.gene65454:CDS |
ATTGATGTTGAAAAGACAAT+GGG | 0.558472 | 1.1:-25727177 | MS.gene65454:CDS |
AATGGAGAAACATGCTTCAG+AGG | 0.558614 | 1.1:-25735911 | MS.gene65454:CDS |
ACCATGCTATCATGTAACTC+TGG | 0.559494 | 1.1:+25727210 | None:intergenic |
ACTTTCTCAGAGGCTGAAGC+TGG | 0.559650 | 1.1:+25734320 | None:intergenic |
GATTCAACAGTAATAGATGC+TGG | 0.559785 | 1.1:-25727300 | MS.gene65454:CDS |
CTTCGAGCACTTTGTCACCA+TGG | 0.559910 | 1.1:+25727412 | None:intergenic |
AGAGGAGACGGTCAAGAAGT+CGG | 0.560108 | 1.1:-25735246 | MS.gene65454:CDS |
TGTGTTGGCTCTTTGAGCAG+TGG | 0.560118 | 1.1:+25728791 | None:intergenic |
GTCAAGAAGTCGTGAACGCG+AGG | 0.561101 | 1.1:-25735056 | MS.gene65454:CDS |
AACTACAACATCACTTATTG+TGG | 0.561162 | 1.1:+25732556 | None:intergenic |
AGCAGCCAAATCATGCATGC+TGG | 0.562459 | 1.1:+25734487 | None:intergenic |
AAATAGTTTACTGCCATCAA+AGG | 0.563857 | 1.1:+25734060 | None:intergenic |
ATGCTACCCGCCCTATGAGA+AGG | 0.563863 | 1.1:-25734361 | MS.gene65454:CDS |
ATAATGAGCATTACACAGAA+AGG | 0.565395 | 1.1:-25735594 | MS.gene65454:CDS |
TGTGTCTGGAGTAGGTTCTT+CGG | 0.567361 | 1.1:+25727518 | None:intergenic |
AGGCTTACCACTTTGAGGCA+AGG | 0.569190 | 1.1:-25730333 | MS.gene65454:CDS |
TCGAAATGATGATGAAACTC+AGG | 0.569530 | 1.1:-25735380 | MS.gene65454:CDS |
GCCCCGTTCTCTTTCACCAA+GGG | 0.570207 | 1.1:-25735203 | MS.gene65454:CDS |
CACGGTTCGTCCATTTCAGG+AGG | 0.571329 | 1.1:-25727133 | MS.gene65454:CDS |
ATGATGATGAAACTCAGGAC+AGG | 0.573142 | 1.1:-25735375 | MS.gene65454:CDS |
ATAAACCCTTCTCATAGGGC+GGG | 0.573510 | 1.1:+25734355 | None:intergenic |
TGCTACCCGCCCTATGAGAA+GGG | 0.574243 | 1.1:-25734360 | MS.gene65454:CDS |
GTCAAGAACTCGGGAGCGTG+AGG | 0.575086 | 1.1:-25734879 | MS.gene65454:CDS |
TGAATGGTATGAGCCTGGGA+GGG | 0.575492 | 1.1:-25729037 | MS.gene65454:CDS |
GAAGAAGACAAAGATAATGA+TGG | 0.575789 | 1.1:-25727393 | MS.gene65454:CDS |
TACTATGTCGATATCGTCGA+TGG | 0.575807 | 1.1:+25734699 | None:intergenic |
AAGTAGAAGGTCAAGAACTC+GGG | 0.578297 | 1.1:-25734888 | MS.gene65454:CDS |
GGTTTGAATGGTATGAGCCT+GGG | 0.578635 | 1.1:-25729041 | MS.gene65454:CDS |
ACGTCTCTTTGACGGCAGAA+TGG | 0.580375 | 1.1:-25726941 | MS.gene65454:CDS |
CTGACAGAGAAAGCATAGAC+AGG | 0.580633 | 1.1:+25734786 | None:intergenic |
TGTAGTTGATTCCCCAAACA+AGG | 0.580898 | 1.1:-25732540 | MS.gene65454:intron |
AAGAAGTAATTGGCGTTCTG+TGG | 0.581589 | 1.1:-25736142 | MS.gene65454:CDS |
TCATGTGGCCAGACATTGCA+AGG | 0.582086 | 1.1:-25727589 | MS.gene65454:CDS |
ATGAAGAACCAACCATGAAG+AGG | 0.585069 | 1.1:-25735264 | MS.gene65454:CDS |
ACTGTCAGTCAGAGAAAGCA+TGG | 0.586818 | 1.1:+25734958 | None:intergenic |
CTGTTAATACTTCCCCTCCC+AGG | 0.587392 | 1.1:+25729024 | None:intergenic |
TGCTGACCCTTGCCTCAAAG+TGG | 0.589000 | 1.1:+25730326 | None:intergenic |
ACCTGACTGTTTGAAGGAGA+GGG | 0.590195 | 1.1:-25736169 | MS.gene65454:CDS |
AGCCCCGTTCTCTTTCACCA+AGG | 0.591951 | 1.1:-25735204 | MS.gene65454:CDS |
AAATGTAAAAGGTCCTGCTA+AGG | 0.592273 | 1.1:-25736031 | MS.gene65454:CDS |
TCTATCATCTTTATCTGACA+CGG | 0.592596 | 1.1:-25727763 | MS.gene65454:CDS |
TGCTCTGGAATGCCATAAGA+TGG | 0.593271 | 1.1:+25728821 | None:intergenic |
ATGGCAAAGATAGACATGAT+GGG | 0.594996 | 1.1:-25735567 | MS.gene65454:CDS |
AAGATACATCAAAATCTGAA+AGG | 0.595408 | 1.1:-25735657 | MS.gene65454:CDS |
TCCAGAGTTACATGATAGCA+TGG | 0.595493 | 1.1:-25727211 | MS.gene65454:CDS |
CTATCATCTTTATCTGACAC+GGG | 0.595544 | 1.1:-25727762 | MS.gene65454:CDS |
TGGCAAAGATAGACATGATG+GGG | 0.596315 | 1.1:-25735566 | MS.gene65454:CDS |
TGAAGAAAAGACAAGAGAAG+AGG | 0.599567 | 1.1:-25735749 | MS.gene65454:CDS |
TTGAATGGTATGAGCCTGGG+AGG | 0.600077 | 1.1:-25729038 | MS.gene65454:CDS |
ATGTGCCCTTGGTGAAAGAG+AGG | 0.600670 | 1.1:+25734841 | None:intergenic |
AGAGATTCAGATAACAAGCA+TGG | 0.603533 | 1.1:-25735691 | MS.gene65454:CDS |
TTTGAGGCAAGGGTCAGCAA+TGG | 0.603633 | 1.1:-25730322 | MS.gene65454:CDS |
GACCGTTAAATCAATTCATG+TGG | 0.604281 | 1.1:-25727604 | MS.gene65454:CDS |
ACAGTGTGTGTGTCTGGAGT+AGG | 0.604688 | 1.1:+25727510 | None:intergenic |
AACCAACCATGAAGAGGAGA+CGG | 0.606604 | 1.1:-25735258 | MS.gene65454:CDS |
CACAAGATGCTCTTGACATG+TGG | 0.608945 | 1.1:+25727326 | None:intergenic |
GTCAAGAAGTCGGGATCATG+AGG | 0.609418 | 1.1:-25735236 | MS.gene65454:CDS |
CGACATAGTAGCCCTGCTAG+TGG | 0.609672 | 1.1:-25734686 | MS.gene65454:CDS |
GGAGAATGCTTAGATGGTGA+AGG | 0.610969 | 1.1:+25734611 | None:intergenic |
TATTGATGTTGAAAAGACAA+TGG | 0.611873 | 1.1:-25727178 | MS.gene65454:CDS |
GATAAACCCTTCTCATAGGG+CGG | 0.612497 | 1.1:+25734354 | None:intergenic |
TGGTGAACCAGAGAGATCAG+TGG | 0.612628 | 1.1:-25732588 | MS.gene65454:CDS |
TGTGGAATTCCTTACAGCTG+AGG | 0.612965 | 1.1:-25734101 | MS.gene65454:CDS |
TGTTACTATCAAAGCTTGTG+CGG | 0.614885 | 1.1:-25729063 | MS.gene65454:CDS |
TAAATCATCTTTCGTCACGA+TGG | 0.615304 | 1.1:+25735849 | None:intergenic |
TGTGCCCTTGGTGAAAGAGA+GGG | 0.616915 | 1.1:+25734842 | None:intergenic |
AAGACAAGAGAAGAGGGGCG+TGG | 0.617122 | 1.1:-25735742 | MS.gene65454:CDS |
TTCAAGGATGTCCTGATCAG+GGG | 0.620193 | 1.1:-25727251 | MS.gene65454:CDS |
AGATAAGCATATCCATGCAG+AGG | 0.625598 | 1.1:-25735476 | MS.gene65454:CDS |
GTGCCCTTGGTGAAAGAGAG+GGG | 0.627220 | 1.1:+25734843 | None:intergenic |
CATTACACAGAAAGGAAGCA+TGG | 0.627445 | 1.1:-25735586 | MS.gene65454:CDS |
AGCCACCAAGTCCACTAGCA+GGG | 0.629194 | 1.1:+25734675 | None:intergenic |
AAGGTCCTGCTAAGGAAGCG+TGG | 0.629212 | 1.1:-25736023 | MS.gene65454:CDS |
GATAAGCATATCCATGCAGA+GGG | 0.630334 | 1.1:-25735475 | MS.gene65454:CDS |
CATAGAAAGACTTATCAGGA+TGG | 0.632216 | 1.1:-25734821 | MS.gene65454:CDS |
GCGTGGAATAAATCACCTGA+AGG | 0.633959 | 1.1:-25736006 | MS.gene65454:CDS |
CAATACAGACTCAGAAAACA+CGG | 0.635402 | 1.1:-25727151 | MS.gene65454:CDS |
ACTATCTGTCAGAGAAAGCA+CGG | 0.636048 | 1.1:+25735138 | None:intergenic |
CTCAGGACAGGAATGCAATG+AGG | 0.637840 | 1.1:-25735363 | MS.gene65454:CDS |
TTGTTGGATATGATTTACAC+CGG | 0.638547 | 1.1:+25734262 | None:intergenic |
TTGCAGGTGCATAAAGATAG+GGG | 0.639374 | 1.1:-25734133 | MS.gene65454:intron |
ACGGTTCGTCCATTTCAGGA+GGG | 0.639891 | 1.1:-25727132 | MS.gene65454:CDS |
TTATGAGAGGAAGAACAGGC+AGG | 0.640101 | 1.1:-25735305 | MS.gene65454:CDS |
GAAGAAATAGGAGCTAGAGT+AGG | 0.640117 | 1.1:+25734542 | None:intergenic |
GTGAACGCGAGGATAGAAGA+AGG | 0.647217 | 1.1:-25735045 | MS.gene65454:CDS |
GTAGGATCTGTCCCTACAGG+AGG | 0.648976 | 1.1:+25734560 | None:intergenic |
TTACACCGGAAGAAAGCAAG+AGG | 0.652037 | 1.1:+25734276 | None:intergenic |
GCCCTTGGTGAAAGAGAACG+GGG | 0.652802 | 1.1:+25735202 | None:intergenic |
TGCCCTTGGTGAAAGAGAGG+GGG | 0.657952 | 1.1:+25734844 | None:intergenic |
ATGTACGATTGGAATGTGCA+AGG | 0.660221 | 1.1:-25727719 | MS.gene65454:intron |
GGCAAAGATAGACATGATGG+GGG | 0.664242 | 1.1:-25735565 | MS.gene65454:CDS |
ATCCATCACAACTTTCTCAG+AGG | 0.669505 | 1.1:+25734310 | None:intergenic |
TAAATCATATCCAACAAACT+CGG | 0.671795 | 1.1:-25734256 | MS.gene65454:CDS |
ACAGGTGGAATGGAGTTCCA+TGG | 0.672731 | 1.1:-25727429 | MS.gene65454:CDS |
ATAACCCACACATTTATGAG+AGG | 0.685858 | 1.1:-25735318 | MS.gene65454:CDS |
CACTGGTAGAGGCTTCACGA+TGG | 0.692309 | 1.1:+25734445 | None:intergenic |
TATGTCGATATCGTCGATGG+TGG | 0.693966 | 1.1:+25734702 | None:intergenic |
GACTTGGTGGCTATTCACCA+AGG | 0.697367 | 1.1:-25734664 | MS.gene65454:CDS |
AAGAAAAGACAAGAGAAGAG+GGG | 0.697944 | 1.1:-25735747 | MS.gene65454:CDS |
TCTTGCGTACTCAACAAGAA+CGG | 0.698477 | 1.1:+25727002 | None:intergenic |
TATGCCTGATGCATCACCTG+TGG | 0.720348 | 1.1:-25728991 | MS.gene65454:intron |
GCAAAGATAGACATGATGGG+GGG | 0.730288 | 1.1:-25735564 | MS.gene65454:CDS |
TTAATTTGAATAGTTCACAG+TGG | 0.736809 | 1.1:-25727790 | MS.gene65454:intron |
GGGAGCGTGAGGATAGAAGG+AGG | 0.740607 | 1.1:-25734868 | MS.gene65454:CDS |
TCTGGAATGCCATAAGATGG+TGG | 0.747907 | 1.1:+25728824 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 25726888 | 25736199 | 25726888 | ID=MS.gene65454 |
chr1.1 | mRNA | 25726888 | 25736199 | 25726888 | ID=MS.gene65454.t1;Parent=MS.gene65454 |
chr1.1 | exon | 25734238 | 25736199 | 25734238 | ID=MS.gene65454.t1.exon1;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25734238 | 25736199 | 25734238 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25734012 | 25734149 | 25734012 | ID=MS.gene65454.t1.exon2;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25734012 | 25734149 | 25734012 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25732541 | 25732612 | 25732541 | ID=MS.gene65454.t1.exon3;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25732541 | 25732612 | 25732541 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25730539 | 25730580 | 25730539 | ID=MS.gene65454.t1.exon4;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25730539 | 25730580 | 25730539 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25730303 | 25730389 | 25730303 | ID=MS.gene65454.t1.exon5;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25730303 | 25730389 | 25730303 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25728992 | 25729099 | 25728992 | ID=MS.gene65454.t1.exon6;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25728992 | 25729099 | 25728992 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25728769 | 25728861 | 25728769 | ID=MS.gene65454.t1.exon7;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25728769 | 25728861 | 25728769 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25727720 | 25727799 | 25727720 | ID=MS.gene65454.t1.exon8;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25727720 | 25727799 | 25727720 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
chr1.1 | exon | 25726888 | 25727632 | 25726888 | ID=MS.gene65454.t1.exon9;Parent=MS.gene65454.t1 |
chr1.1 | CDS | 25726888 | 25727632 | 25726888 | ID=cds.MS.gene65454.t1;Parent=MS.gene65454.t1 |
Gene Sequence |
Protein sequence |