Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65490.t1 | O48905.1 | 100 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 5.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65490.t1 | O48905 | 100.0 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 1.2e-185 | 650.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65490.t1 | B7FJQ4 | 99.1 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 1.2e-181 | 645.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005767 | MS.gene65490 | PPI |
| MS.gene65490 | MS.gene68423 | PPI |
| MS.gene65490 | MS.gene21413 | PPI |
| MS.gene65490 | MS.gene032247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65490.t1 | MTR_1g043040 | 99.096 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| MS.gene65490.t1 | MTR_1g076130 | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| MS.gene65490.t1 | MTR_8g005980 | 85.106 | 329 | 49 | 0 | 3 | 331 | 85 | 413 | 0.0 | 565 |
| MS.gene65490.t1 | MTR_1g090730 | 39.210 | 329 | 193 | 4 | 3 | 328 | 92 | 416 | 9.22e-73 | 231 |
| MS.gene65490.t1 | MTR_1g090730 | 40.741 | 270 | 156 | 1 | 3 | 272 | 92 | 357 | 1.90e-61 | 201 |
| MS.gene65490.t1 | MTR_7g037650 | 73.913 | 46 | 12 | 0 | 15 | 60 | 24 | 69 | 6.63e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65490.t1 | AT1G04410 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 604 |
| MS.gene65490.t1 | AT5G43330 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 602 |
| MS.gene65490.t1 | AT5G56720 | 73.795 | 332 | 87 | 0 | 1 | 332 | 40 | 371 | 0.0 | 517 |
| MS.gene65490.t1 | AT5G58330 | 41.337 | 329 | 186 | 4 | 3 | 328 | 97 | 421 | 1.52e-78 | 247 |
| MS.gene65490.t1 | AT5G58330 | 41.337 | 329 | 186 | 4 | 3 | 328 | 96 | 420 | 1.58e-78 | 247 |
| MS.gene65490.t1 | AT5G58330 | 41.270 | 315 | 178 | 4 | 17 | 328 | 2 | 312 | 1.20e-75 | 236 |
Find 95 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCGCGATTGGGTTCT+TGG | 0.190578 | 1.3:-25699046 | MS.gene65490:CDS |
| GCTGCATTTCCACTTCTTAA+AGG | 0.217111 | 1.3:-25701406 | MS.gene65490:intron |
| AAACAAGAAATGTTTCTTTC+TGG | 0.220813 | 1.3:+25699721 | None:intergenic |
| GTCATTGAATGGAGTTAAAA+TGG | 0.260659 | 1.3:-25701440 | MS.gene65490:CDS |
| GCTGACTGAGGAAAAGAATT+TGG | 0.291306 | 1.3:-25698112 | MS.gene65490:CDS |
| ATGTAAAGAATGTCATAATC+TGG | 0.320654 | 1.3:-25699633 | MS.gene65490:CDS |
| CATGGTTGACATCAGGATAC+TGG | 0.330089 | 1.3:+25699593 | None:intergenic |
| ATGTTTCTTTCTGGAATAGA+TGG | 0.330607 | 1.3:+25699730 | None:intergenic |
| AACTTGAACATTCAATCTTT+CGG | 0.331338 | 1.3:+25699660 | None:intergenic |
| CGGACGGGCTTCTCCCCAGC+TGG | 0.336380 | 1.3:+25699556 | None:intergenic |
| AAGAACACGAACTGGGTCTT+TGG | 0.339916 | 1.3:+25702474 | None:intergenic |
| TGTCAAATTTCAGGGCAAAT+TGG | 0.341571 | 1.3:-25701556 | MS.gene65490:intron |
| ACGTGGTGCTGCAATTATTA+AGG | 0.343639 | 1.3:-25699116 | MS.gene65490:CDS |
| GGCTCACTCTTGCCTCTCTT+AGG | 0.351901 | 1.3:-25698091 | None:intergenic |
| CTCCCCAGCTGGGGTGTTAA+CGG | 0.352315 | 1.3:+25699567 | None:intergenic |
| ATCAATGCATTGGTGTTTGC+TGG | 0.355483 | 1.3:+25699769 | None:intergenic |
| TGACTAGACTGGATCACAAT+AGG | 0.375649 | 1.3:-25699699 | MS.gene65490:CDS |
| TGAAGAATCACGGGTTGATC+TGG | 0.385920 | 1.3:+25701490 | None:intergenic |
| CTTGTGACCACATTCGCGAT+TGG | 0.397092 | 1.3:-25699054 | MS.gene65490:CDS |
| CATTTCTTGTTTGACTAGAC+TGG | 0.399545 | 1.3:-25699710 | MS.gene65490:CDS |
| CTGGATCACAATAGGGCTTT+GGG | 0.403334 | 1.3:-25699691 | MS.gene65490:CDS |
| ACTGGATCACAATAGGGCTT+TGG | 0.414883 | 1.3:-25699692 | MS.gene65490:CDS |
| TTGTGACCACATTCGCGATT+GGG | 0.424378 | 1.3:-25699053 | MS.gene65490:CDS |
| ATCACTCCCCTAGCAATCAT+AGG | 0.425010 | 1.3:+25701520 | None:intergenic |
| TTAGGGTACCTTCGTTTCAA+TGG | 0.430895 | 1.3:-25698930 | MS.gene65490:intron |
| TGTCTCTATTTACAAGTCTC+AGG | 0.438961 | 1.3:-25701133 | MS.gene65490:CDS |
| CACCAATGCATTGATCTTGA+AGG | 0.441335 | 1.3:-25699761 | MS.gene65490:CDS |
| GGACGGGCTTCTCCCCAGCT+GGG | 0.441906 | 1.3:+25699557 | None:intergenic |
| AAAAGAAGGTATGGAGAGGA+AGG | 0.445651 | 1.3:-25701172 | MS.gene65490:CDS |
| CCAGTTCGTGTTCTTGTCAC+TGG | 0.450164 | 1.3:-25702466 | MS.gene65490:CDS |
| CTCTTGTCCCTATGATTGCT+AGG | 0.451223 | 1.3:-25701528 | MS.gene65490:CDS |
| CCAGTGACAAGAACACGAAC+TGG | 0.452334 | 1.3:+25702466 | None:intergenic |
| GACTAGACTGGATCACAATA+GGG | 0.457909 | 1.3:-25699698 | MS.gene65490:CDS |
| TAGGGTACCTTCGTTTCAAT+GGG | 0.465774 | 1.3:-25698929 | MS.gene65490:CDS |
| GCAACCGTTAACACCCCAGC+TGG | 0.472405 | 1.3:-25699571 | MS.gene65490:CDS |
| AACTTGTTTCCGACGATGCA+TGG | 0.473611 | 1.3:-25699531 | MS.gene65490:intron |
| CAATCCAGATGGTACATTGT+AGG | 0.475070 | 1.3:+25698889 | None:intergenic |
| ACGGTTGCATGGTTGACATC+AGG | 0.475537 | 1.3:+25699586 | None:intergenic |
| TCACCATTGGCACAGGTGAC+AGG | 0.479094 | 1.3:+25698854 | None:intergenic |
| GGTTCCTACAATGTACCATC+TGG | 0.482781 | 1.3:-25698893 | MS.gene65490:CDS |
| TTGGGTTCTTGGAACTCCCC+AGG | 0.483482 | 1.3:-25699035 | MS.gene65490:intron |
| TGTAAAGAATGTCATAATCT+GGG | 0.486354 | 1.3:-25699632 | MS.gene65490:CDS |
| TGAGTTCTCAAGGAAGAAGT+TGG | 0.488677 | 1.3:-25698151 | MS.gene65490:CDS |
| CCATTCAATGACTCTGCTGC+AGG | 0.499494 | 1.3:+25701451 | None:intergenic |
| GGTGAATGGAAAATAGTTCA+AGG | 0.505213 | 1.3:-25698836 | MS.gene65490:intron |
| TTCCTTCAAGATCAATGCAT+TGG | 0.507360 | 1.3:+25699759 | None:intergenic |
| TAAGTTATACCTTTAAGAAG+TGG | 0.509514 | 1.3:+25701397 | None:intergenic |
| GTTCTTGTCACTGGTGCCGC+AGG | 0.510375 | 1.3:-25702457 | MS.gene65490:intron |
| GTCAATATTGCTGTCATGGT+TGG | 0.510745 | 1.3:-25701207 | MS.gene65490:CDS |
| TTCCCTGTCACCTGTGCCAA+TGG | 0.517722 | 1.3:-25698857 | MS.gene65490:CDS |
| TGGCAGCAGCATGCTTCTCA+AGG | 0.517868 | 1.3:+25701103 | None:intergenic |
| TCTTGTCCCTATGATTGCTA+GGG | 0.522049 | 1.3:-25701527 | MS.gene65490:CDS |
| ATCAAGCATGTGAAGAATCA+CGG | 0.524158 | 1.3:+25701480 | None:intergenic |
| AATATTGCTGTCATGGTTGG+TGG | 0.527412 | 1.3:-25701204 | MS.gene65490:CDS |
| TTTCCATTCACCATTGGCAC+AGG | 0.528068 | 1.3:+25698847 | None:intergenic |
| CCTGCAGCAGAGTCATTGAA+TGG | 0.529172 | 1.3:-25701451 | MS.gene65490:CDS |
| ATTCCCAAGAAAAGAAGGTA+TGG | 0.532607 | 1.3:-25701181 | MS.gene65490:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.534652 | 1.3:-25698914 | MS.gene65490:CDS |
| TCACCTGTGCCAATGGTGAA+TGG | 0.535072 | 1.3:-25698850 | MS.gene65490:CDS |
| CACCATTGGCACAGGTGACA+GGG | 0.547097 | 1.3:+25698855 | None:intergenic |
| TGGAGTTAAAATGGAGTTGG+TGG | 0.549300 | 1.3:-25701431 | MS.gene65490:CDS |
| GAAAGGGATTACCTTGCAGT+TGG | 0.551890 | 1.3:+25701083 | None:intergenic |
| GATGTTGTTGAGGCATGCAC+TGG | 0.553507 | 1.3:-25701231 | MS.gene65490:CDS |
| TTTCAATTGATGAGTTCTCA+AGG | 0.554558 | 1.3:-25698161 | MS.gene65490:CDS |
| GGTGGATTCCCAAGAAAAGA+AGG | 0.558887 | 1.3:-25701186 | MS.gene65490:CDS |
| TGGAGTCAATATTGCTGTCA+TGG | 0.560156 | 1.3:-25701211 | MS.gene65490:CDS |
| TCAAGCATGTGAAGAATCAC+GGG | 0.563379 | 1.3:+25701481 | None:intergenic |
| GACGGGCTTCTCCCCAGCTG+GGG | 0.574611 | 1.3:+25699558 | None:intergenic |
| GAATGGAGTTAAAATGGAGT+TGG | 0.576011 | 1.3:-25701434 | MS.gene65490:CDS |
| TCACTCCCCTAGCAATCATA+GGG | 0.576220 | 1.3:+25701521 | None:intergenic |
| CAACCGTTAACACCCCAGCT+GGG | 0.578072 | 1.3:-25699570 | MS.gene65490:CDS |
| CAAGAACCCAATCGCGAATG+TGG | 0.578729 | 1.3:+25699047 | None:intergenic |
| TCAATGCATTGGTGTTTGCT+GGG | 0.583030 | 1.3:+25699770 | None:intergenic |
| ATTGCTAGGGGAGTGATGCT+CGG | 0.583162 | 1.3:-25701514 | MS.gene65490:CDS |
| GCATGCTGCTGCCAACTGCA+AGG | 0.584268 | 1.3:-25701094 | MS.gene65490:intron |
| ATGGTTGACATCAGGATACT+GGG | 0.588881 | 1.3:+25699594 | None:intergenic |
| CTGGGGTGTTAACGGTTGCA+TGG | 0.594321 | 1.3:+25699575 | None:intergenic |
| TCGGAAACAAGTTGACGGAC+GGG | 0.596905 | 1.3:+25699541 | None:intergenic |
| GTCGGAAACAAGTTGACGGA+CGG | 0.602916 | 1.3:+25699540 | None:intergenic |
| TGCTACAACCGATGTTGTTG+AGG | 0.602981 | 1.3:-25701241 | MS.gene65490:CDS |
| GGCAGCAGCATGCTTCTCAA+GGG | 0.606803 | 1.3:+25701104 | None:intergenic |
| AAAATAAAGCAGCCTAAGAG+AGG | 0.609879 | 1.3:+25698079 | None:intergenic |
| CAGTGACAAGAACACGAACT+GGG | 0.614915 | 1.3:+25702467 | None:intergenic |
| CATCGTCGGAAACAAGTTGA+CGG | 0.615176 | 1.3:+25699536 | None:intergenic |
| CAAGAAAAGAAGGTATGGAG+AGG | 0.633211 | 1.3:-25701176 | MS.gene65490:CDS |
| TGTGATATACCATGCATCGT+CGG | 0.641057 | 1.3:+25699522 | None:intergenic |
| CTTGTCCCTATGATTGCTAG+GGG | 0.642364 | 1.3:-25701526 | MS.gene65490:CDS |
| AATGAATAGATCAATCCAGA+TGG | 0.645749 | 1.3:+25698878 | None:intergenic |
| GTAAAGAATGTCATAATCTG+GGG | 0.647423 | 1.3:-25699631 | MS.gene65490:CDS |
| GACAGCCGAAGAGCTGACTG+AGG | 0.649625 | 1.3:-25698124 | MS.gene65490:CDS |
| ATACACTCCCATTGAAACGA+AGG | 0.652020 | 1.3:+25698922 | None:intergenic |
| AGTGCATGCCTCAACAACAT+CGG | 0.653960 | 1.3:+25701233 | None:intergenic |
| AACCGTTAACACCCCAGCTG+GGG | 0.658466 | 1.3:-25699569 | MS.gene65490:CDS |
| AGCACCACGTTGTTGAACAG+TGG | 0.672850 | 1.3:+25699129 | None:intergenic |
| ATTTCCACTGTTCAACAACG+TGG | 0.687346 | 1.3:-25699133 | MS.gene65490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAAACAAAGAAAAA+AGG | + | chr1.3:25700210-25700229 | None:intergenic | 10.0% |
| !!! | TTAATTAATTTGTTATTCTT+CGG | - | chr1.3:25700256-25700275 | MS.gene65490:intron | 10.0% |
| !! | CTAATTTAAATTTGATCTAA+TGG | - | chr1.3:25698942-25698961 | MS.gene65490:intron | 15.0% |
| !! | TAATTAAAAACAGAGAAAAA+AGG | + | chr1.3:25700243-25700262 | None:intergenic | 15.0% |
| !! | TACAAAATTTAACTCAAATT+TGG | + | chr1.3:25702350-25702369 | None:intergenic | 15.0% |
| !! | TTCTAATGAAATTGAAATTA+TGG | - | chr1.3:25702117-25702136 | MS.gene65490:intron | 15.0% |
| !!! | AATTTGAGTTAAATTTTGTA+CGG | - | chr1.3:25702350-25702369 | MS.gene65490:intron | 15.0% |
| !!! | TGATAATTGATAATGTTTTA+TGG | + | chr1.3:25699861-25699880 | None:intergenic | 15.0% |
| !!! | TTTTAAGTAAAGATTCAATT+TGG | - | chr1.3:25698492-25698511 | MS.gene65490:intron | 15.0% |
| !! | AAAAAATCATCAGAAAAACA+TGG | + | chr1.3:25698246-25698265 | None:intergenic | 20.0% |
| !! | AAAAACATAGATCAAAACAT+GGG | + | chr1.3:25698195-25698214 | None:intergenic | 20.0% |
| !! | AAACTGGTATATATAGAAAA+AGG | - | chr1.3:25699593-25699612 | MS.gene65490:CDS | 20.0% |
| !! | AACTGGTATATATAGAAAAA+GGG | - | chr1.3:25699594-25699613 | MS.gene65490:CDS | 20.0% |
| !! | ACTAGAAAAAGAATATAAAC+TGG | + | chr1.3:25702144-25702163 | None:intergenic | 20.0% |
| !! | AGATCATAAATAGTTAAGAA+TGG | + | chr1.3:25701189-25701208 | None:intergenic | 20.0% |
| !! | AGTTAATGAAACATTCAATA+CGG | + | chr1.3:25699203-25699222 | None:intergenic | 20.0% |
| !! | ATATAAAAAAGTGACTAATG+TGG | + | chr1.3:25698566-25698585 | None:intergenic | 20.0% |
| !! | GATCTTTATACAATTGAAAA+TGG | + | chr1.3:25699942-25699961 | None:intergenic | 20.0% |
| !! | TACAAAAACAACAGTTAAAA+AGG | - | chr1.3:25701319-25701338 | MS.gene65490:intron | 20.0% |
| !! | TTTAGTTGAAAATGTAAAGA+GGG | + | chr1.3:25701969-25701988 | None:intergenic | 20.0% |
| !!! | AAATGTAATGATGTTTTTTG+AGG | + | chr1.3:25699663-25699682 | None:intergenic | 20.0% |
| !!! | AGTTTGGATTTATTTTTTGT+CGG | - | chr1.3:25698658-25698677 | MS.gene65490:intron | 20.0% |
| !!! | ATGGTTTGTAAAAACAAAAA+AGG | + | chr1.3:25701876-25701895 | None:intergenic | 20.0% |
| !!! | ATTTTTAGACGTTGTTTTAT+AGG | - | chr1.3:25701098-25701117 | MS.gene65490:CDS | 20.0% |
| !!! | GTTTTATTGAAAGTAAAGAA+AGG | + | chr1.3:25702042-25702061 | None:intergenic | 20.0% |
| !!! | TATTTTAAATAAGGTCAGAT+TGG | + | chr1.3:25700135-25700154 | None:intergenic | 20.0% |
| !!! | TTGTATTCTTTTACAATTTC+TGG | - | chr1.3:25702177-25702196 | MS.gene65490:intron | 20.0% |
| !!! | TTGTATTGTATGCATTTTTT+TGG | - | chr1.3:25700727-25700746 | MS.gene65490:intron | 20.0% |
| !!! | TTTTTTGGAAAATTTACAGA+AGG | - | chr1.3:25700742-25700761 | MS.gene65490:intron | 20.0% |
| ! | AAAAGTTGCATTCTCATAAT+TGG | - | chr1.3:25698843-25698862 | MS.gene65490:CDS | 25.0% |
| ! | AAACAAGAAATGTTTCTTTC+TGG | + | chr1.3:25700852-25700871 | None:intergenic | 25.0% |
| ! | AACTTGAACATTCAATCTTT+CGG | + | chr1.3:25700913-25700932 | None:intergenic | 25.0% |
| ! | AATCAATATGAACCACAAAT+TGG | + | chr1.3:25700077-25700096 | None:intergenic | 25.0% |
| ! | AATTAGACGATCTAGATTAA+TGG | + | chr1.3:25698928-25698947 | None:intergenic | 25.0% |
| ! | ACCAAGAAATGAAATGTTAT+AGG | + | chr1.3:25699972-25699991 | None:intergenic | 25.0% |
| ! | ACCTATAACATTTCATTTCT+TGG | - | chr1.3:25699968-25699987 | MS.gene65490:intron | 25.0% |
| ! | ATAATACCCTTCACTATTTA+TGG | + | chr1.3:25701233-25701252 | None:intergenic | 25.0% |
| ! | ATAATGTTCTGTCAAATTTC+AGG | - | chr1.3:25699005-25699024 | MS.gene65490:intron | 25.0% |
| ! | ATGTAAAGAATGTCATAATC+TGG | - | chr1.3:25700937-25700956 | MS.gene65490:intron | 25.0% |
| ! | CAAAAACATAGATCAAAACA+TGG | + | chr1.3:25698196-25698215 | None:intergenic | 25.0% |
| ! | CTTTAGTTGAAAATGTAAAG+AGG | + | chr1.3:25701970-25701989 | None:intergenic | 25.0% |
| ! | GATAGAAAATGCATACAAAA+AGG | + | chr1.3:25700055-25700074 | None:intergenic | 25.0% |
| ! | TAATGTTCTGTCAAATTTCA+GGG | - | chr1.3:25699006-25699025 | MS.gene65490:intron | 25.0% |
| ! | TAATTGTTATGCTTGAAAAC+TGG | - | chr1.3:25699577-25699596 | MS.gene65490:CDS | 25.0% |
| ! | TGTAAAGAATGTCATAATCT+GGG | - | chr1.3:25700938-25700957 | MS.gene65490:intron | 25.0% |
| ! | TTTGTATGCAAATGTTGTAA+TGG | - | chr1.3:25699534-25699553 | MS.gene65490:CDS | 25.0% |
| !! | AAAAAATCCCTACCATATTT+TGG | - | chr1.3:25699749-25699768 | MS.gene65490:CDS | 25.0% |
| !! | GAATTGAGTACCTTTTTATT+TGG | - | chr1.3:25700689-25700708 | MS.gene65490:intron | 25.0% |
| !! | GTTTTTGCAATGAAGATATT+TGG | - | chr1.3:25700468-25700487 | MS.gene65490:intron | 25.0% |
| !! | TAAGTTATACCTTTAAGAAG+TGG | + | chr1.3:25699176-25699195 | None:intergenic | 25.0% |
| !! | TCTTTTCCATTGTAATGTTA+GGG | - | chr1.3:25701623-25701642 | MS.gene65490:intron | 25.0% |
| !! | TGAATGTTTCATTAACTTGA+TGG | - | chr1.3:25699206-25699225 | MS.gene65490:intron | 25.0% |
| !! | TTCTTTTCCATTGTAATGTT+AGG | - | chr1.3:25701622-25701641 | MS.gene65490:intron | 25.0% |
| !! | TTTCTTGGTAATAAAACTTG+TGG | - | chr1.3:25699983-25700002 | MS.gene65490:intron | 25.0% |
| !!! | GTTTGGATTTATTTTTTGTC+GGG | - | chr1.3:25698659-25698678 | MS.gene65490:intron | 25.0% |
| !!! | TGTGTTGATTTATTTGTTTC+AGG | - | chr1.3:25699300-25699319 | MS.gene65490:intron | 25.0% |
| !!! | TTAGTCACTTTTTTATATCG+AGG | - | chr1.3:25698568-25698587 | MS.gene65490:intron | 25.0% |
| !!! | TTTGGATTTATTTTTTGTCG+GGG | - | chr1.3:25698660-25698679 | MS.gene65490:intron | 25.0% |
| !!! | TTTTCTCTATTTAGGTTGAA+TGG | - | chr1.3:25701407-25701426 | MS.gene65490:CDS | 25.0% |
| AAAATTGTGAGGGAACAAAT+TGG | - | chr1.3:25698701-25698720 | MS.gene65490:intron | 30.0% | |
| AAATTAAAATGTAGCCAACC+TGG | + | chr1.3:25701556-25701575 | None:intergenic | 30.0% | |
| AAATTGTGAGGGAACAAATT+GGG | - | chr1.3:25698702-25698721 | MS.gene65490:intron | 30.0% | |
| AACAACAGTTAAAAAGGAAC+TGG | - | chr1.3:25701325-25701344 | MS.gene65490:intron | 30.0% | |
| AAGTCTGAGTTTATGATGAA+AGG | + | chr1.3:25699507-25699526 | None:intergenic | 30.0% | |
| AATGAATAGATCAATCCAGA+TGG | + | chr1.3:25701695-25701714 | None:intergenic | 30.0% | |
| AATGAATCATGTGACTTTAG+AGG | - | chr1.3:25702285-25702304 | MS.gene65490:intron | 30.0% | |
| AATGTCTACCAAAATATGGT+AGG | + | chr1.3:25699760-25699779 | None:intergenic | 30.0% | |
| AATTAAAATGTAGCCAACCT+GGG | + | chr1.3:25701555-25701574 | None:intergenic | 30.0% | |
| AATTTGATCTAATGGCATGA+AGG | - | chr1.3:25698950-25698969 | MS.gene65490:intron | 30.0% | |
| ACAACAGTTAAAAAGGAACT+GGG | - | chr1.3:25701326-25701345 | MS.gene65490:intron | 30.0% | |
| ACCTAATTCATATATGTGCA+AGG | - | chr1.3:25700608-25700627 | MS.gene65490:intron | 30.0% | |
| ACCTGTATATTCACTTTACT+CGG | - | chr1.3:25701840-25701859 | MS.gene65490:intron | 30.0% | |
| AGAAAAACATGGTTAGATCA+TGG | + | chr1.3:25698235-25698254 | None:intergenic | 30.0% | |
| AGTCTGAGTTTATGATGAAA+GGG | + | chr1.3:25699506-25699525 | None:intergenic | 30.0% | |
| ATAACAAAAACCGACAACTT+AGG | + | chr1.3:25701938-25701957 | None:intergenic | 30.0% | |
| ATGTCTACCAAAATATGGTA+GGG | + | chr1.3:25699759-25699778 | None:intergenic | 30.0% | |
| ATTTGATCTAATGGCATGAA+GGG | - | chr1.3:25698951-25698970 | MS.gene65490:intron | 30.0% | |
| CAACCTAAATAGAGAAAAGT+TGG | + | chr1.3:25701405-25701424 | None:intergenic | 30.0% | |
| CCTAATTCATATATGTGCAA+GGG | - | chr1.3:25700609-25700628 | MS.gene65490:intron | 30.0% | |
| CGATCTGTCATAATGAATTA+GGG | + | chr1.3:25698604-25698623 | None:intergenic | 30.0% | |
| CTGCTTGTTTCCAAATAAAA+AGG | + | chr1.3:25700702-25700721 | None:intergenic | 30.0% | |
| GCAAATGTTCACATGAATTT+AGG | - | chr1.3:25700567-25700586 | MS.gene65490:intron | 30.0% | |
| GTAAAGAATGTCATAATCTG+GGG | - | chr1.3:25700939-25700958 | MS.gene65490:intron | 30.0% | |
| GTCATTGAATGGAGTTAAAA+TGG | - | chr1.3:25699130-25699149 | MS.gene65490:CDS | 30.0% | |
| TAATGAAACATTCAATACGG+AGG | + | chr1.3:25699200-25699219 | None:intergenic | 30.0% | |
| TATTTATGGCAGAGAGTAAT+AGG | + | chr1.3:25701219-25701238 | None:intergenic | 30.0% | |
| TCGATCTGTCATAATGAATT+AGG | + | chr1.3:25698605-25698624 | None:intergenic | 30.0% | |
| TCTTCTACTATAGAACACTA+TGG | - | chr1.3:25700324-25700343 | MS.gene65490:intron | 30.0% | |
| TTCAACACTTATGATTGTGA+TGG | + | chr1.3:25701904-25701923 | None:intergenic | 30.0% | |
| TTCCAATGTCTACCAAAATA+TGG | + | chr1.3:25699764-25699783 | None:intergenic | 30.0% | |
| TTCGATCTTGATCTGTTAAT+GGG | - | chr1.3:25698312-25698331 | MS.gene65490:intron | 30.0% | |
| TTGCACATATATGAATTAGG+TGG | + | chr1.3:25700609-25700628 | None:intergenic | 30.0% | |
| TTTCAATTGATGAGTTCTCA+AGG | - | chr1.3:25702409-25702428 | MS.gene65490:intron | 30.0% | |
| TTTCGATCTTGATCTGTTAA+TGG | - | chr1.3:25698311-25698330 | MS.gene65490:intron | 30.0% | |
| ! | AACTATTTTCCATTCACCAT+TGG | + | chr1.3:25701732-25701751 | None:intergenic | 30.0% |
| ! | GTTCCAACTTTTCTCTATTT+AGG | - | chr1.3:25701399-25701418 | MS.gene65490:intron | 30.0% |
| ! | TGCATTTTCTATCCAATTTG+TGG | - | chr1.3:25700062-25700081 | MS.gene65490:intron | 30.0% |
| !! | ATGTTTCTTTCTGGAATAGA+TGG | + | chr1.3:25700843-25700862 | None:intergenic | 30.0% |
| !!! | TACCATATTTTGGTAGACAT+TGG | - | chr1.3:25699759-25699778 | MS.gene65490:CDS | 30.0% |
| !!! | TTTTGGTGTTTGTTGATAAC+TGG | - | chr1.3:25701811-25701830 | MS.gene65490:intron | 30.0% |
| AAACAGTAGAGAAGAGATCA+TGG | + | chr1.3:25698153-25698172 | None:intergenic | 35.0% | |
| AACAAACACCAAAAACTGAG+GGG | + | chr1.3:25701805-25701824 | None:intergenic | 35.0% | |
| AACAGTTAAAAAGGAACTGG+GGG | - | chr1.3:25701328-25701347 | MS.gene65490:intron | 35.0% | |
| AACCCACTACACATGAAATT+TGG | + | chr1.3:25698789-25698808 | None:intergenic | 35.0% | |
| ACCGAGTAAAGTGAATATAC+AGG | + | chr1.3:25701844-25701863 | None:intergenic | 35.0% | |
| AGACGATCTAGATTAATGGT+CGG | + | chr1.3:25698924-25698943 | None:intergenic | 35.0% | |
| ATCAAGCATGTGAAGAATCA+CGG | + | chr1.3:25699093-25699112 | None:intergenic | 35.0% | |
| ATTAAAATGTAGCCAACCTG+GGG | + | chr1.3:25701554-25701573 | None:intergenic | 35.0% | |
| ATTCCCAAGAAAAGAAGGTA+TGG | - | chr1.3:25699389-25699408 | MS.gene65490:intron | 35.0% | |
| CAACAAACACCAAAAACTGA+GGG | + | chr1.3:25701806-25701825 | None:intergenic | 35.0% | |
| CAACAGTTAAAAAGGAACTG+GGG | - | chr1.3:25701327-25701346 | MS.gene65490:intron | 35.0% | |
| CCCTTGCACATATATGAATT+AGG | + | chr1.3:25700612-25700631 | None:intergenic | 35.0% | |
| CTAATGTGGATTTATCGTGT+CGG | + | chr1.3:25698552-25698571 | None:intergenic | 35.0% | |
| GAAAAGAAAATAAGCCGATC+TGG | + | chr1.3:25701610-25701629 | None:intergenic | 35.0% | |
| GAAAGTCCTGTGGATAAAAA+AGG | + | chr1.3:25702393-25702412 | None:intergenic | 35.0% | |
| GAATGGAGTTAAAATGGAGT+TGG | - | chr1.3:25699136-25699155 | MS.gene65490:CDS | 35.0% | |
| GGTGAATGGAAAATAGTTCA+AGG | - | chr1.3:25701734-25701753 | MS.gene65490:intron | 35.0% | |
| GTCCAAATTTCATGTGTAGT+GGG | - | chr1.3:25698784-25698803 | MS.gene65490:intron | 35.0% | |
| TAAAAACCTGGTTGTTGCAT+CGG | - | chr1.3:25700378-25700397 | MS.gene65490:intron | 35.0% | |
| TAAAAATGTCGGCACTAGTT+TGG | - | chr1.3:25698642-25698661 | MS.gene65490:intron | 35.0% | |
| TAATGTGGATTTATCGTGTC+GGG | + | chr1.3:25698551-25698570 | None:intergenic | 35.0% | |
| TCAACAAACACCAAAAACTG+AGG | + | chr1.3:25701807-25701826 | None:intergenic | 35.0% | |
| TCACATGAATTTAGGTGCTT+GGG | - | chr1.3:25700575-25700594 | MS.gene65490:intron | 35.0% | |
| TCTCTGCCATAAATAGTGAA+GGG | - | chr1.3:25701224-25701243 | MS.gene65490:CDS | 35.0% | |
| TGTCAAATTTCAGGGCAAAT+TGG | - | chr1.3:25699014-25699033 | MS.gene65490:intron | 35.0% | |
| TGTCCAAATTTCATGTGTAG+TGG | - | chr1.3:25698783-25698802 | MS.gene65490:intron | 35.0% | |
| TGTCCCAGGTATAAAAATGT+CGG | - | chr1.3:25698631-25698650 | MS.gene65490:intron | 35.0% | |
| TGTCTCTATTTACAAGTCTC+AGG | - | chr1.3:25699437-25699456 | MS.gene65490:intron | 35.0% | |
| TTAAATAAGGTCAGATTGGC+TGG | + | chr1.3:25700131-25700150 | None:intergenic | 35.0% | |
| TTCACATGAATTTAGGTGCT+TGG | - | chr1.3:25700574-25700593 | MS.gene65490:intron | 35.0% | |
| TTCCTTCAAGATCAATGCAT+TGG | + | chr1.3:25700814-25700833 | None:intergenic | 35.0% | |
| TTCTGTATTTGCTTCCAGAT+CGG | - | chr1.3:25701593-25701612 | MS.gene65490:intron | 35.0% | |
| ! | AAATGTTTCCCCTCAGTTTT+TGG | - | chr1.3:25701794-25701813 | MS.gene65490:intron | 35.0% |
| ! | AAGGTACCCTAACATTACAA+TGG | + | chr1.3:25701632-25701651 | None:intergenic | 35.0% |
| ! | AATGGACTTTGTCATGTCAT+CGG | - | chr1.3:25699552-25699571 | MS.gene65490:CDS | 35.0% |
| ! | ACACTTATGATTGTGATGGA+TGG | + | chr1.3:25701900-25701919 | None:intergenic | 35.0% |
| ! | CATTTCTTGTTTGACTAGAC+TGG | - | chr1.3:25700860-25700879 | MS.gene65490:intron | 35.0% |
| ! | TCTCCATACCTTCTTTTCTT+GGG | + | chr1.3:25699395-25699414 | None:intergenic | 35.0% |
| ! | TCTCTACTGTTTCTTCACTT+TGG | - | chr1.3:25698161-25698180 | MS.gene65490:CDS | 35.0% |
| !! | TATGATTGTGATGGATGGTA+TGG | + | chr1.3:25701895-25701914 | None:intergenic | 35.0% |
| !! | TCTTGATCTGTTAATGGGTT+CGG | - | chr1.3:25698317-25698336 | MS.gene65490:intron | 35.0% |
| !!! | TCTTCACCTTTTTTATCCAC+AGG | - | chr1.3:25702384-25702403 | MS.gene65490:intron | 35.0% |
| !!! | TTTTTTGTCGGGGACTTAAT+TGG | - | chr1.3:25698670-25698689 | MS.gene65490:intron | 35.0% |
| AAGGCTTTGCAATATCTTGC+AGG | - | chr1.3:25700761-25700780 | MS.gene65490:intron | 40.0% | |
| AATATTGCTGTCATGGTTGG+TGG | - | chr1.3:25699366-25699385 | MS.gene65490:intron | 40.0% | |
| AATGTGGATTTATCGTGTCG+GGG | + | chr1.3:25698550-25698569 | None:intergenic | 40.0% | |
| ACCTCAAAGAGGCAAAAGTT+TGG | + | chr1.3:25700538-25700557 | None:intergenic | 40.0% | |
| ATACACTCCCATTGAAACGA+AGG | + | chr1.3:25701651-25701670 | None:intergenic | 40.0% | |
| ATGGACTTTGTCATGTCATC+GGG | - | chr1.3:25699553-25699572 | MS.gene65490:CDS | 40.0% | |
| ATGGTTGACATCAGGATACT+GGG | + | chr1.3:25700979-25700998 | None:intergenic | 40.0% | |
| ATTGGAAATGTAGCGACTAC+TGG | - | chr1.3:25698861-25698880 | MS.gene65490:CDS | 40.0% | |
| ATTTCCACTGTTCAACAACG+TGG | - | chr1.3:25701437-25701456 | MS.gene65490:CDS | 40.0% | |
| CAATCCAGATGGTACATTGT+AGG | + | chr1.3:25701684-25701703 | None:intergenic | 40.0% | |
| CATTGTGCGAAATTGTGATG+TGG | - | chr1.3:25698811-25698830 | MS.gene65490:intron | 40.0% | |
| CGACTACTGGATTTAATCTG+TGG | - | chr1.3:25698874-25698893 | MS.gene65490:CDS | 40.0% | |
| CTCATCAATTGAAAGTCCTG+TGG | + | chr1.3:25702403-25702422 | None:intergenic | 40.0% | |
| CTCTCTGCCATAAATAGTGA+AGG | - | chr1.3:25701223-25701242 | MS.gene65490:CDS | 40.0% | |
| GACTAGACTGGATCACAATA+GGG | - | chr1.3:25700872-25700891 | MS.gene65490:intron | 40.0% | |
| GCTGACTGAGGAAAAGAATT+TGG | - | chr1.3:25702458-25702477 | MS.gene65490:CDS | 40.0% | |
| GCTGCATTTCCACTTCTTAA+AGG | - | chr1.3:25699164-25699183 | MS.gene65490:intron | 40.0% | |
| GTCAATATTGCTGTCATGGT+TGG | - | chr1.3:25699363-25699382 | MS.gene65490:intron | 40.0% | |
| TAATGGCATGAAGGGAATCT+GGG | - | chr1.3:25698959-25698978 | MS.gene65490:intron | 40.0% | |
| TATCGTGTCGGGGAATAAAT+TGG | + | chr1.3:25698540-25698559 | None:intergenic | 40.0% | |
| TCAACGTGATTTCATTGCGA+AGG | - | chr1.3:25700649-25700668 | MS.gene65490:intron | 40.0% | |
| TCAAGCATGTGAAGAATCAC+GGG | + | chr1.3:25699092-25699111 | None:intergenic | 40.0% | |
| TCTTGTCCCTATGATTGCTA+GGG | - | chr1.3:25699043-25699062 | MS.gene65490:CDS | 40.0% | |
| TGACTAGACTGGATCACAAT+AGG | - | chr1.3:25700871-25700890 | MS.gene65490:intron | 40.0% | |
| TGAGTTCTCAAGGAAGAAGT+TGG | - | chr1.3:25702419-25702438 | MS.gene65490:intron | 40.0% | |
| TGGAGTCAATATTGCTGTCA+TGG | - | chr1.3:25699359-25699378 | MS.gene65490:intron | 40.0% | |
| TGGAGTTAAAATGGAGTTGG+TGG | - | chr1.3:25699139-25699158 | MS.gene65490:CDS | 40.0% | |
| TGTGATATACCATGCATCGT+CGG | + | chr1.3:25701051-25701070 | None:intergenic | 40.0% | |
| TTGCAATATCTTGCAGGTTC+TGG | - | chr1.3:25700767-25700786 | MS.gene65490:intron | 40.0% | |
| ! | AAAAGAAGGTATGGAGAGGA+AGG | - | chr1.3:25699398-25699417 | MS.gene65490:intron | 40.0% |
| ! | ATCAATGCATTGGTGTTTGC+TGG | + | chr1.3:25700804-25700823 | None:intergenic | 40.0% |
| ! | CAAGAAAAGAAGGTATGGAG+AGG | - | chr1.3:25699394-25699413 | MS.gene65490:intron | 40.0% |
| ! | CACCAATGCATTGATCTTGA+AGG | - | chr1.3:25700809-25700828 | MS.gene65490:intron | 40.0% |
| ! | CTCTCCATACCTTCTTTTCT+TGG | + | chr1.3:25699396-25699415 | None:intergenic | 40.0% |
| ! | GTTCCCTCACAATTTTCTCT+CGG | + | chr1.3:25698697-25698716 | None:intergenic | 40.0% |
| ! | TAGGGTACCTTCGTTTCAAT+GGG | - | chr1.3:25701641-25701660 | MS.gene65490:intron | 40.0% |
| ! | TCAATGCATTGGTGTTTGCT+GGG | + | chr1.3:25700803-25700822 | None:intergenic | 40.0% |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr1.3:25701656-25701675 | MS.gene65490:intron | 40.0% |
| ! | TTAGGGTACCTTCGTTTCAA+TGG | - | chr1.3:25701640-25701659 | MS.gene65490:intron | 40.0% |
| ! | TTCCCTCACAATTTTCTCTC+GGG | + | chr1.3:25698696-25698715 | None:intergenic | 40.0% |
| !! | AACCCTCGTGCTTAATTTGT+CGG | - | chr1.3:25701997-25702016 | MS.gene65490:intron | 40.0% |
| !! | ACGTGGTGCTGCAATTATTA+AGG | - | chr1.3:25701454-25701473 | MS.gene65490:CDS | 40.0% |
| !! | ATTAGAAAAGCACTCCACCA+AGG | + | chr1.3:25702104-25702123 | None:intergenic | 40.0% |
| !! | GTGCCGACATTTTTATACCT+GGG | + | chr1.3:25698637-25698656 | None:intergenic | 40.0% |
| !!! | AGTGCCGACATTTTTATACC+TGG | + | chr1.3:25698638-25698657 | None:intergenic | 40.0% |
| !!! | ATGATGTTTTTTGAGGACGC+CGG | + | chr1.3:25699656-25699675 | None:intergenic | 40.0% |
| !!! | CTTTTGCCTCTTTGAGGTTT+AGG | - | chr1.3:25700540-25700559 | MS.gene65490:intron | 40.0% |
| AAAACTTGTGGTTGAGCCAG+CGG | - | chr1.3:25699995-25700014 | MS.gene65490:intron | 45.0% | |
| AAACCGACAACTTAGGCATG+AGG | + | chr1.3:25701931-25701950 | None:intergenic | 45.0% | |
| AACAAACCGATGCAACAACC+AGG | + | chr1.3:25700387-25700406 | None:intergenic | 45.0% | |
| AACCGACAACTTAGGCATGA+GGG | + | chr1.3:25701930-25701949 | None:intergenic | 45.0% | |
| AAGAACACGAACTGGGTCTT+TGG | + | chr1.3:25698099-25698118 | None:intergenic | 45.0% | |
| ACACCGACAAATTAAGCACG+AGG | + | chr1.3:25702003-25702022 | None:intergenic | 45.0% | |
| ACTGGATCACAATAGGGCTT+TGG | - | chr1.3:25700878-25700897 | MS.gene65490:intron | 45.0% | |
| AGTGCATGCCTCAACAACAT+CGG | + | chr1.3:25699340-25699359 | None:intergenic | 45.0% | |
| ATCACTCCCCTAGCAATCAT+AGG | + | chr1.3:25699053-25699072 | None:intergenic | 45.0% | |
| ATTAAAGCTCCCGCATATGC+AGG | - | chr1.3:25699628-25699647 | MS.gene65490:CDS | 45.0% | |
| CACCGACAAATTAAGCACGA+GGG | + | chr1.3:25702002-25702021 | None:intergenic | 45.0% | |
| CAGTGACAAGAACACGAACT+GGG | + | chr1.3:25698106-25698125 | None:intergenic | 45.0% | |
| CATGGTTGACATCAGGATAC+TGG | + | chr1.3:25700980-25700999 | None:intergenic | 45.0% | |
| CTAATGGCATGAAGGGAATC+TGG | - | chr1.3:25698958-25698977 | MS.gene65490:intron | 45.0% | |
| CTCTTGTCCCTATGATTGCT+AGG | - | chr1.3:25699042-25699061 | MS.gene65490:CDS | 45.0% | |
| CTGGATCACAATAGGGCTTT+GGG | - | chr1.3:25700879-25700898 | MS.gene65490:intron | 45.0% | |
| CTTGTCCCTATGATTGCTAG+GGG | - | chr1.3:25699044-25699063 | MS.gene65490:CDS | 45.0% | |
| GAAAGGGATTACCTTGCAGT+TGG | + | chr1.3:25699490-25699509 | None:intergenic | 45.0% | |
| GAGCAATTTAGTAGTACCGC+TGG | + | chr1.3:25700014-25700033 | None:intergenic | 45.0% | |
| GCATCTCCTAAACCTCAAAG+AGG | + | chr1.3:25700549-25700568 | None:intergenic | 45.0% | |
| GGTTCCTACAATGTACCATC+TGG | - | chr1.3:25701677-25701696 | MS.gene65490:intron | 45.0% | |
| TCACTCCCCTAGCAATCATA+GGG | + | chr1.3:25699052-25699071 | None:intergenic | 45.0% | |
| TGCTACAACCGATGTTGTTG+AGG | - | chr1.3:25699329-25699348 | MS.gene65490:intron | 45.0% | |
| TTAAAGCTCCCGCATATGCA+GGG | - | chr1.3:25699629-25699648 | MS.gene65490:CDS | 45.0% | |
| TTGTGACCACATTCGCGATT+GGG | - | chr1.3:25701517-25701536 | MS.gene65490:CDS | 45.0% | |
| TTTCCATTCACCATTGGCAC+AGG | + | chr1.3:25701726-25701745 | None:intergenic | 45.0% | |
| ! | AACTTGTTTCCGACGATGCA+TGG | - | chr1.3:25701039-25701058 | MS.gene65490:intron | 45.0% |
| ! | CAGATCGACTTATTTGTCCC+AGG | - | chr1.3:25698617-25698636 | MS.gene65490:intron | 45.0% |
| ! | CATCGTCGGAAACAAGTTGA+CGG | + | chr1.3:25701037-25701056 | None:intergenic | 45.0% |
| ! | CGGTTTGTTTGAGACTATGC+TGG | - | chr1.3:25700398-25700417 | MS.gene65490:intron | 45.0% |
| ! | CTTTTCCTCAGTCAGCTCTT+CGG | + | chr1.3:25702454-25702473 | None:intergenic | 45.0% |
| ! | GCCAAACTTTTGCCTCTTTG+AGG | - | chr1.3:25700534-25700553 | MS.gene65490:intron | 45.0% |
| ! | GGTGGATTCCCAAGAAAAGA+AGG | - | chr1.3:25699384-25699403 | MS.gene65490:intron | 45.0% |
| ! | GTCAGATTGGCTGGTTCAAT+TGG | + | chr1.3:25700122-25700141 | None:intergenic | 45.0% |
| !! | GGTGATGAAAGAAGTACCTG+CGG | + | chr1.3:25698132-25698151 | None:intergenic | 45.0% |
| !! | TGAAGAATCACGGGTTGATC+TGG | + | chr1.3:25699083-25699102 | None:intergenic | 45.0% |
| !!! | AGGTTTTTAGCCCCTAAGTG+GGG | + | chr1.3:25700367-25700386 | None:intergenic | 45.0% |
| !!! | CAGGTTTTTAGCCCCTAAGT+GGG | + | chr1.3:25700368-25700387 | None:intergenic | 45.0% |
| !! | AAAAATAAAAAAAAAAAACT+TGG | + | chr1.3:25699698-25699717 | None:intergenic | 5.0% |
| !! | ATTATATAATATATTACATA+TGG | + | chr1.3:25699908-25699927 | None:intergenic | 5.0% |
| !!! | ATTTTTTTGATTTTAAATAA+TGG | - | chr1.3:25698259-25698278 | MS.gene65490:intron | 5.0% |
| !!! | TAATAACATTATTTTAAATA+AGG | + | chr1.3:25700144-25700163 | None:intergenic | 5.0% |
| !!! | TTTTTTTGATTTTAAATAAT+GGG | - | chr1.3:25698260-25698279 | MS.gene65490:intron | 5.0% |
| ACGGTTGCATGGTTGACATC+AGG | + | chr1.3:25700987-25701006 | None:intergenic | 50.0% | |
| AGCACCACGTTGTTGAACAG+TGG | + | chr1.3:25701444-25701463 | None:intergenic | 50.0% | |
| ATGTTGCTGACCCCACTTAG+GGG | - | chr1.3:25700354-25700373 | MS.gene65490:intron | 50.0% | |
| ATTGCTAGGGGAGTGATGCT+CGG | - | chr1.3:25699056-25699075 | MS.gene65490:CDS | 50.0% | |
| CAAGAACCCAATCGCGAATG+TGG | + | chr1.3:25701526-25701545 | None:intergenic | 50.0% | |
| CACATTCGCGATTGGGTTCT+TGG | - | chr1.3:25701524-25701543 | MS.gene65490:CDS | 50.0% | |
| CACCCTCATGCCTAAGTTGT+CGG | - | chr1.3:25701925-25701944 | MS.gene65490:intron | 50.0% | |
| CATGTTGCTGACCCCACTTA+GGG | - | chr1.3:25700353-25700372 | MS.gene65490:intron | 50.0% | |
| CCACTTAGGGGCTAAAAACC+TGG | - | chr1.3:25700366-25700385 | MS.gene65490:intron | 50.0% | |
| CCAGTGACAAGAACACGAAC+TGG | + | chr1.3:25698107-25698126 | None:intergenic | 50.0% | |
| CCAGTTCGTGTTCTTGTCAC+TGG | - | chr1.3:25698104-25698123 | MS.gene65490:CDS | 50.0% | |
| CCATTCAATGACTCTGCTGC+AGG | + | chr1.3:25699122-25699141 | None:intergenic | 50.0% | |
| CCTGCAGCAGAGTCATTGAA+TGG | - | chr1.3:25699119-25699138 | MS.gene65490:CDS | 50.0% | |
| CTTGTGACCACATTCGCGAT+TGG | - | chr1.3:25701516-25701535 | MS.gene65490:CDS | 50.0% | |
| GATGTTGTTGAGGCATGCAC+TGG | - | chr1.3:25699339-25699358 | MS.gene65490:intron | 50.0% | |
| GGCCCGAGAGAAAATTGTGA+GGG | - | chr1.3:25698691-25698710 | MS.gene65490:intron | 50.0% | |
| TCACCTGTGCCAATGGTGAA+TGG | - | chr1.3:25701720-25701739 | MS.gene65490:intron | 50.0% | |
| TGGCCCGAGAGAAAATTGTG+AGG | - | chr1.3:25698690-25698709 | MS.gene65490:intron | 50.0% | |
| ! | ATGCGGGAGCTTTAATGCAG+CGG | + | chr1.3:25699624-25699643 | None:intergenic | 50.0% |
| ! | GTCGGAAACAAGTTGACGGA+CGG | + | chr1.3:25701033-25701052 | None:intergenic | 50.0% |
| ! | TCGGAAACAAGTTGACGGAC+GGG | + | chr1.3:25701032-25701051 | None:intergenic | 50.0% |
| !!! | CCAGGTTTTTAGCCCCTAAG+TGG | + | chr1.3:25700369-25700388 | None:intergenic | 50.0% |
| AACCGTTAACACCCCAGCTG+GGG | - | chr1.3:25701001-25701020 | MS.gene65490:intron | 55.0% | |
| CAACCGTTAACACCCCAGCT+GGG | - | chr1.3:25701000-25701019 | MS.gene65490:intron | 55.0% | |
| CACCATTGGCACAGGTGACA+GGG | + | chr1.3:25701718-25701737 | None:intergenic | 55.0% | |
| CCATGTTGCTGACCCCACTT+AGG | - | chr1.3:25700352-25700371 | MS.gene65490:intron | 55.0% | |
| CCTAAGTGGGGTCAGCAACA+TGG | + | chr1.3:25700355-25700374 | None:intergenic | 55.0% | |
| GGCAGCAGCATGCTTCTCAA+GGG | + | chr1.3:25699469-25699488 | None:intergenic | 55.0% | |
| GGCATGAAGGGAATCTGGGT+CGG | - | chr1.3:25698963-25698982 | MS.gene65490:intron | 55.0% | |
| GTTCTTGGAACTCCCCAGGT+TGG | - | chr1.3:25701539-25701558 | MS.gene65490:CDS | 55.0% | |
| TCACCATTGGCACAGGTGAC+AGG | + | chr1.3:25701719-25701738 | None:intergenic | 55.0% | |
| TGGCAGCAGCATGCTTCTCA+AGG | + | chr1.3:25699470-25699489 | None:intergenic | 55.0% | |
| TTCCCTGTCACCTGTGCCAA+TGG | - | chr1.3:25701713-25701732 | MS.gene65490:intron | 55.0% | |
| TTGGGTTCTTGGAACTCCCC+AGG | - | chr1.3:25701535-25701554 | MS.gene65490:CDS | 55.0% | |
| ! | CTGGGGTGTTAACGGTTGCA+TGG | + | chr1.3:25700998-25701017 | None:intergenic | 55.0% |
| ! | GCACTCCACCAAGGAGTATG+AGG | + | chr1.3:25702095-25702114 | None:intergenic | 55.0% |
| ! | TGCGGGAGCTTTAATGCAGC+GGG | + | chr1.3:25699623-25699642 | None:intergenic | 55.0% |
| GACAGCCGAAGAGCTGACTG+AGG | - | chr1.3:25702446-25702465 | MS.gene65490:intron | 60.0% | |
| GCAACCGTTAACACCCCAGC+TGG | - | chr1.3:25700999-25701018 | MS.gene65490:intron | 60.0% | |
| GCATGCTGCTGCCAACTGCA+AGG | - | chr1.3:25699476-25699495 | MS.gene65490:intron | 60.0% | |
| ! | CTCCCCAGCTGGGGTGTTAA+CGG | + | chr1.3:25701006-25701025 | None:intergenic | 60.0% |
| !! | GTTCTTGTCACTGGTGCCGC+AGG | - | chr1.3:25698113-25698132 | MS.gene65490:CDS | 60.0% |
| ACGCCGGACCCTGCATATGC+GGG | + | chr1.3:25699640-25699659 | None:intergenic | 65.0% | |
| GACGCCGGACCCTGCATATG+CGG | + | chr1.3:25699641-25699660 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr1.3:25699634-25699653 | MS.gene65490:CDS | 65.0% | |
| ! | GACGGGCTTCTCCCCAGCTG+GGG | + | chr1.3:25701015-25701034 | None:intergenic | 70.0% |
| ! | GGACGGGCTTCTCCCCAGCT+GGG | + | chr1.3:25701016-25701035 | None:intergenic | 70.0% |
| ! | CGGACGGGCTTCTCCCCAGC+TGG | + | chr1.3:25701017-25701036 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25698092 | 25702500 | 25698092 | ID=MS.gene65490 |
| chr1.3 | mRNA | 25698092 | 25702500 | 25698092 | ID=MS.gene65490.t1;Parent=MS.gene65490 |
| chr1.3 | exon | 25702458 | 25702500 | 25702458 | ID=MS.gene65490.t1.exon1;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25702458 | 25702500 | 25702458 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25701407 | 25701565 | 25701407 | ID=MS.gene65490.t1.exon2;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25701407 | 25701565 | 25701407 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25701095 | 25701270 | 25701095 | ID=MS.gene65490.t1.exon3;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25701095 | 25701270 | 25701095 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25699532 | 25699809 | 25699532 | ID=MS.gene65490.t1.exon4;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25699532 | 25699809 | 25699532 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25699036 | 25699171 | 25699036 | ID=MS.gene65490.t1.exon5;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25699036 | 25699171 | 25699036 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25698837 | 25698948 | 25698837 | ID=MS.gene65490.t1.exon6;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25698837 | 25698948 | 25698837 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| chr1.3 | exon | 25698092 | 25698186 | 25698092 | ID=MS.gene65490.t1.exon7;Parent=MS.gene65490.t1 |
| chr1.3 | CDS | 25698092 | 25698186 | 25698092 | ID=cds.MS.gene65490.t1;Parent=MS.gene65490.t1 |
| Gene Sequence |
| Protein sequence |
