Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65563.t1 | XP_013446003.1 | 93.9 | 506 | 31 | 0 | 1 | 506 | 1 | 506 | 4.50E-279 | 969.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65563.t1 | O80763 | 55.4 | 565 | 182 | 3 | 11 | 506 | 15 | 578 | 3.7e-181 | 636.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65563.t1 | A0A072U2K8 | 93.9 | 506 | 31 | 0 | 1 | 506 | 1 | 506 | 3.2e-279 | 969.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65563 | MS.gene33593 | PPI |
| MS.gene65563 | MS.gene59310 | PPI |
| MS.gene65563 | MS.gene026627 | PPI |
| MS.gene63007 | MS.gene65563 | PPI |
| MS.gene65563 | MS.gene026628 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65563.t1 | MTR_8g064840 | 93.874 | 506 | 31 | 0 | 1 | 506 | 1 | 506 | 0.0 | 971 |
| MS.gene65563.t1 | MTR_8g064810 | 85.744 | 484 | 69 | 0 | 1 | 484 | 1 | 484 | 0.0 | 852 |
| MS.gene65563.t1 | MTR_8g064810 | 37.389 | 337 | 208 | 3 | 166 | 501 | 6 | 340 | 5.70e-67 | 226 |
| MS.gene65563.t1 | MTR_3g114530 | 41.009 | 317 | 173 | 5 | 175 | 477 | 40 | 356 | 1.90e-79 | 254 |
| MS.gene65563.t1 | MTR_3g114530 | 40.506 | 316 | 173 | 4 | 15 | 315 | 40 | 355 | 1.80e-75 | 244 |
| MS.gene65563.t1 | MTR_3g114530 | 44.586 | 157 | 74 | 4 | 12 | 156 | 201 | 356 | 1.81e-33 | 132 |
| MS.gene65563.t1 | MTR_3g109120 | 38.608 | 316 | 192 | 2 | 175 | 490 | 19 | 332 | 3.33e-77 | 248 |
| MS.gene65563.t1 | MTR_3g109120 | 34.043 | 329 | 212 | 5 | 9 | 335 | 13 | 338 | 1.01e-61 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65563.t1 | AT1G60420 | 62.737 | 475 | 176 | 1 | 9 | 483 | 13 | 486 | 0.0 | 633 |
| MS.gene65563.t1 | AT1G60420 | 38.922 | 334 | 201 | 3 | 170 | 502 | 14 | 345 | 4.87e-70 | 234 |
| MS.gene65563.t1 | AT1G60420 | 43.293 | 164 | 89 | 3 | 329 | 490 | 13 | 174 | 2.09e-36 | 142 |
| MS.gene65563.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 6.20e-74 | 239 |
| MS.gene65563.t1 | AT4G31240 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 4.12e-63 | 211 |
| MS.gene65563.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 6.20e-74 | 239 |
| MS.gene65563.t1 | AT4G31240 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 4.12e-63 | 211 |
Find 128 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATGAAACAATTCTTTA+AGG | 0.135448 | 8.2:+36900315 | None:intergenic |
| CGAGATCTGGTTGGGCTCTA+TGG | 0.142538 | 8.2:-36899041 | MS.gene65563:CDS |
| CTCCCCTCCTTCGTTGTTAT+TGG | 0.216122 | 8.2:-36899689 | MS.gene65563:CDS |
| ATCACAAACCCATCCATCTT+TGG | 0.250320 | 8.2:+36898941 | None:intergenic |
| GATTCCGGTGTCAGAATTAA+AGG | 0.269414 | 8.2:-36899363 | MS.gene65563:CDS |
| GTTCACATTATCCGTGAATA+TGG | 0.278551 | 8.2:-36900233 | MS.gene65563:CDS |
| TGACTCTTCCTCATCATCTA+AGG | 0.282702 | 8.2:+36899805 | None:intergenic |
| TGTCTTGTGTCTTGATCTTA+AGG | 0.293186 | 8.2:+36899261 | None:intergenic |
| CTTGGAAAAGTAGTTGTTAA+AGG | 0.300775 | 8.2:+36900385 | None:intergenic |
| TCCCCTCCTTCGTTGTTATT+GGG | 0.319196 | 8.2:-36899688 | MS.gene65563:CDS |
| CTTGCATTGATCGATGAAAC+TGG | 0.324942 | 8.2:-36900278 | MS.gene65563:CDS |
| AAACTTGTTTGAAACTAGTT+AGG | 0.330734 | 8.2:-36899730 | MS.gene65563:CDS |
| CTCCTTTGATGAATTCTTTG+CGG | 0.339201 | 8.2:-36899192 | MS.gene65563:CDS |
| AAAGAATTGTTTCATGTAAA+CGG | 0.340648 | 8.2:-36900311 | MS.gene65563:CDS |
| TCAAACACTTGAGTCAGTTT+TGG | 0.355313 | 8.2:-36899540 | MS.gene65563:CDS |
| AGGTATGCATCAATGAGTTT+TGG | 0.355397 | 8.2:+36899281 | None:intergenic |
| AGTCGCAAATTCAAGGTATC+TGG | 0.359780 | 8.2:-36899119 | MS.gene65563:CDS |
| CTCTCCCAAGGGTGACTTTG+AGG | 0.370317 | 8.2:-36900441 | MS.gene65563:CDS |
| CCAGTCCTTGAGATCGATAT+TGG | 0.378969 | 8.2:-36900138 | MS.gene65563:CDS |
| CCATGGCTGGCACTTCCCTT+TGG | 0.383022 | 8.2:-36899164 | MS.gene65563:CDS |
| AACATGCAGATTTCAGGCTT+TGG | 0.384409 | 8.2:+36898905 | None:intergenic |
| GCTATTTAATGAAAAGCTTA+AGG | 0.386865 | 8.2:-36899882 | MS.gene65563:CDS |
| TTTGGGCTTCTCTCCTTCCT+TGG | 0.391386 | 8.2:+36898959 | None:intergenic |
| TCACAAACCCATCCATCTTT+GGG | 0.399851 | 8.2:+36898942 | None:intergenic |
| TCTTCGAAACACCGGCGATC+AGG | 0.402540 | 8.2:-36901139 | MS.gene65563:intron |
| CACGAAAGAGGCTCGAGATC+TGG | 0.405594 | 8.2:-36899054 | MS.gene65563:CDS |
| GAGATCTGGTTGGGCTCTAT+GGG | 0.414235 | 8.2:-36899040 | MS.gene65563:CDS |
| GGTCCGATCGCCACAAGCTT+GGG | 0.414337 | 8.2:+36899092 | None:intergenic |
| TCAATGGCATCAGCGGCATT+AGG | 0.420216 | 8.2:+36899644 | None:intergenic |
| TTCGTTGTTATTGGGCCAGA+TGG | 0.439861 | 8.2:-36899680 | MS.gene65563:CDS |
| GGGAAAGTTGTTACTGAAGA+TGG | 0.440804 | 8.2:-36900257 | MS.gene65563:CDS |
| TTTCCCTCAATCTCAGAGAT+AGG | 0.443663 | 8.2:+36899950 | None:intergenic |
| AGCTTGAAGGGAAAGAAACT+TGG | 0.454943 | 8.2:-36900539 | MS.gene65563:CDS |
| TCCTCTACTTCTCAGCCCAC+TGG | 0.456326 | 8.2:-36899328 | MS.gene65563:CDS |
| GATACCCTTTCACATTAGAA+AGG | 0.462202 | 8.2:-36900202 | MS.gene65563:CDS |
| ATTCCGGTGTCAGAATTAAA+GGG | 0.462516 | 8.2:-36899362 | MS.gene65563:CDS |
| TGGTCCGATCGCCACAAGCT+TGG | 0.462521 | 8.2:+36899091 | None:intergenic |
| TTGGTTATCCTTGCCTCTCA+AGG | 0.468978 | 8.2:-36899756 | MS.gene65563:CDS |
| GAGCCTCTTTCGTGACAGTC+AGG | 0.476275 | 8.2:+36899063 | None:intergenic |
| GATACCTATCTCTGAGATTG+AGG | 0.476914 | 8.2:-36899954 | MS.gene65563:CDS |
| ATTATCCGTGAATATGGAAC+TGG | 0.477075 | 8.2:-36900227 | MS.gene65563:CDS |
| AAGTGTTTGAGATGCCTCCT+TGG | 0.478467 | 8.2:+36899553 | None:intergenic |
| ATTTCTAAGTCGCAAATTCA+AGG | 0.483874 | 8.2:-36899126 | MS.gene65563:CDS |
| TGGTCTTCATCTCTAGTGAC+AGG | 0.485675 | 8.2:-36899223 | MS.gene65563:CDS |
| GGAGAGAATAAAAGAAATAG+AGG | 0.489082 | 8.2:-36898994 | MS.gene65563:CDS |
| TGAACCCTTTCTAATGTGAA+AGG | 0.489248 | 8.2:+36900197 | None:intergenic |
| AAGAGGCTCGAGATCTGGTT+GGG | 0.493773 | 8.2:-36899049 | MS.gene65563:CDS |
| AACAACCTCAAAGTCACCCT+TGG | 0.495759 | 8.2:+36900436 | None:intergenic |
| CGAAGAAGAAAGTCTCTATC+GGG | 0.499270 | 8.2:+36901156 | None:intergenic |
| GAACCCTTTCTAATGTGAAA+GGG | 0.499789 | 8.2:+36900198 | None:intergenic |
| CTTTGCGGAAATGCCATGGC+TGG | 0.502358 | 8.2:-36899177 | MS.gene65563:CDS |
| AGGAATTAGAAAGCGTGCCT+TGG | 0.503159 | 8.2:-36899775 | MS.gene65563:CDS |
| AGAGTTGAAAGATATAGAAG+AGG | 0.503305 | 8.2:-36900174 | MS.gene65563:CDS |
| GGAAAATGGGGAGCACTTTG+AGG | 0.503865 | 8.2:-36899840 | MS.gene65563:CDS |
| GCTGATGCCATTGAGGATCA+TGG | 0.504159 | 8.2:-36899635 | MS.gene65563:CDS |
| GATAGCCAGCCATGGCATCT+TGG | 0.504355 | 8.2:+36900367 | None:intergenic |
| TTCGTGACAGTCAGGCCACT+TGG | 0.508645 | 8.2:+36899071 | None:intergenic |
| ATCCTCCAGTTCCATATTCA+CGG | 0.515188 | 8.2:+36900222 | None:intergenic |
| TCGAAGAAGAAAGTCTCTAT+CGG | 0.521912 | 8.2:+36901155 | None:intergenic |
| GAGATTGAGGGAAAGACAGT+TGG | 0.525484 | 8.2:-36899941 | MS.gene65563:CDS |
| ATTCCCAAGCTTGTGGCGAT+CGG | 0.529129 | 8.2:-36899095 | MS.gene65563:CDS |
| ACCAGTGGGCTGAGAAGTAG+AGG | 0.529711 | 8.2:+36899327 | None:intergenic |
| ATACCCTTTCACATTAGAAA+GGG | 0.530953 | 8.2:-36900201 | MS.gene65563:CDS |
| TTTATTCTCTCCTCAGTGAA+AGG | 0.534022 | 8.2:+36899005 | None:intergenic |
| ATACCTATCTCTGAGATTGA+GGG | 0.534296 | 8.2:-36899953 | MS.gene65563:CDS |
| GACTTTCTTCTTCGAAACAC+CGG | 0.534369 | 8.2:-36901147 | MS.gene65563:CDS |
| GAGAGAAGCCCAAAGATGGA+TGG | 0.538351 | 8.2:-36898950 | MS.gene65563:CDS |
| GTCTATCCCATGATCCTCAA+TGG | 0.543337 | 8.2:+36899628 | None:intergenic |
| CATTGAGAAAGATGGGAAGA+AGG | 0.544022 | 8.2:-36899495 | MS.gene65563:intron |
| GGCCCAATAACAACGAAGGA+GGG | 0.547821 | 8.2:+36899686 | None:intergenic |
| AAAGAGGCTCGAGATCTGGT+TGG | 0.548388 | 8.2:-36899050 | MS.gene65563:CDS |
| AGTGTCTCTGAATCTGAAAG+TGG | 0.548817 | 8.2:+36900344 | None:intergenic |
| GAAGGAGAGAAGCCCAAAGA+TGG | 0.550367 | 8.2:-36898954 | MS.gene65563:CDS |
| CTGATGCCATTGAGGATCAT+GGG | 0.553965 | 8.2:-36899634 | MS.gene65563:CDS |
| TGGCCTGACTGTCACGAAAG+AGG | 0.559786 | 8.2:-36899066 | MS.gene65563:CDS |
| ACAACCTCAAAGTCACCCTT+GGG | 0.560092 | 8.2:+36900437 | None:intergenic |
| TCGTTGTTATTGGGCCAGAT+GGG | 0.561804 | 8.2:-36899679 | MS.gene65563:CDS |
| AGACAATGATGCGCTTGAAG+TGG | 0.563569 | 8.2:-36899243 | MS.gene65563:CDS |
| ATATAGAAGAGGAAGCTAAG+AGG | 0.564358 | 8.2:-36900163 | MS.gene65563:CDS |
| ATCATTCACTCCAACGTTGG+TGG | 0.565663 | 8.2:-36900480 | MS.gene65563:CDS |
| CCGATCATTCACTCCAACGT+TGG | 0.572955 | 8.2:-36900483 | MS.gene65563:CDS |
| TAATGCCGCTGATGCCATTG+AGG | 0.573168 | 8.2:-36899642 | MS.gene65563:CDS |
| GACTCTTCCTCATCATCTAA+GGG | 0.575321 | 8.2:+36899806 | None:intergenic |
| ATTCACTCCAACGTTGGTGG+AGG | 0.578411 | 8.2:-36900477 | MS.gene65563:CDS |
| CCAATATCGATCTCAAGGAC+TGG | 0.581021 | 8.2:+36900138 | None:intergenic |
| AGAGAAGCCCAAAGATGGAT+GGG | 0.583984 | 8.2:-36898949 | MS.gene65563:CDS |
| GCCCAATAACAACGAAGGAG+GGG | 0.585041 | 8.2:+36899687 | None:intergenic |
| TTCCGCAAAGAATTCATCAA+AGG | 0.585272 | 8.2:+36899190 | None:intergenic |
| TTCCCCTTTAATTCTGACAC+CGG | 0.586881 | 8.2:+36899359 | None:intergenic |
| GTTTATACCCTTAGATGATG+AGG | 0.588642 | 8.2:-36899813 | MS.gene65563:CDS |
| CTTTCAGATTCAGAGACACT+CGG | 0.590998 | 8.2:-36900341 | MS.gene65563:CDS |
| ATCTGGCATTCCCAAGCTTG+TGG | 0.593565 | 8.2:-36899102 | MS.gene65563:CDS |
| TTTGGAAGAAACTCACGGCA+TGG | 0.593881 | 8.2:+36899299 | None:intergenic |
| ATGATCCTCAATGGCATCAG+CGG | 0.595653 | 8.2:+36899637 | None:intergenic |
| AGAGACCAATATCGATCTCA+AGG | 0.596132 | 8.2:+36900133 | None:intergenic |
| GTACAACGAACTCTCTCCCA+AGG | 0.596192 | 8.2:-36900453 | MS.gene65563:CDS |
| CGATGAAATAGCAAAGGCCA+AGG | 0.596494 | 8.2:-36899570 | MS.gene65563:CDS |
| AGATGATATCACAAAGTCAC+GGG | 0.597322 | 8.2:+36900106 | None:intergenic |
| CCAACGTTGGAGTGAATGAT+CGG | 0.598716 | 8.2:+36900483 | None:intergenic |
| ATCCGTGAATATGGAACTGG+AGG | 0.602853 | 8.2:-36900224 | MS.gene65563:CDS |
| ATTTAATGAAAAGCTTAAGG+AGG | 0.604615 | 8.2:-36899879 | MS.gene65563:CDS |
| AAAGATGGATGGGTTTGTGA+TGG | 0.605439 | 8.2:-36898939 | MS.gene65563:CDS |
| TGAGGAAGAGTCATTCAAGA+AGG | 0.612234 | 8.2:-36899795 | MS.gene65563:CDS |
| AATTCTTTGCGGAAATGCCA+TGG | 0.613584 | 8.2:-36899181 | MS.gene65563:CDS |
| CACGGCATGGAGGACACCAG+TGG | 0.616281 | 8.2:+36899312 | None:intergenic |
| TTGCATTGATCGATGAAACT+GGG | 0.616731 | 8.2:-36900277 | MS.gene65563:CDS |
| CAGATGATATCACAAAGTCA+CGG | 0.616914 | 8.2:+36900105 | None:intergenic |
| AGTCTCTATCGGGAGAAGAG+AGG | 0.619260 | 8.2:+36901166 | None:intergenic |
| TCATCGATCAATGCAAGATG+AGG | 0.621385 | 8.2:+36900284 | None:intergenic |
| CCAAAGGGAAGTGCCAGCCA+TGG | 0.621888 | 8.2:+36899164 | None:intergenic |
| TGGCCCAATAACAACGAAGG+AGG | 0.624367 | 8.2:+36899685 | None:intergenic |
| ACGGCATGGAGGACACCAGT+GGG | 0.635887 | 8.2:+36899313 | None:intergenic |
| ATCTGGCCCAATAACAACGA+AGG | 0.643673 | 8.2:+36899682 | None:intergenic |
| TTCCGGTGTCAGAATTAAAG+GGG | 0.646538 | 8.2:-36899361 | MS.gene65563:CDS |
| TGAACTCGATGAAATAGCAA+AGG | 0.647912 | 8.2:-36899576 | MS.gene65563:CDS |
| GTGTCTCTGAATCTGAAAGT+GGG | 0.648793 | 8.2:+36900345 | None:intergenic |
| AGTGGGCTGAGAAGTAGAGG+AGG | 0.655615 | 8.2:+36899330 | None:intergenic |
| GAAAGTGGGATAGCCAGCCA+TGG | 0.661509 | 8.2:+36900359 | None:intergenic |
| CTTGTGGCGATCGGACCAAG+TGG | 0.664406 | 8.2:-36899086 | MS.gene65563:CDS |
| TACAACGAACTCTCTCCCAA+GGG | 0.674592 | 8.2:-36900452 | MS.gene65563:CDS |
| AGATCTGGTTGGGCTCTATG+GGG | 0.677010 | 8.2:-36899039 | MS.gene65563:CDS |
| TTGTACACCTCCACCAACGT+TGG | 0.681470 | 8.2:+36900470 | None:intergenic |
| TGAAATAGCAAAGGCCAAGG+AGG | 0.686521 | 8.2:-36899567 | MS.gene65563:CDS |
| GGTCTTCATCTCTAGTGACA+GGG | 0.686873 | 8.2:-36899222 | MS.gene65563:CDS |
| TTGAGAGGCAAGGATAACCA+AGG | 0.706344 | 8.2:+36899758 | None:intergenic |
| GTTGGAGTGAATGATCGGCA+CGG | 0.721516 | 8.2:+36900488 | None:intergenic |
| GGAAGAAACTCACGGCATGG+AGG | 0.726391 | 8.2:+36899302 | None:intergenic |
| AGATGCTTATCCTTTCACTG+AGG | 0.785205 | 8.2:-36899015 | MS.gene65563:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATGAATTAAAAAGA+GGG | + | chr8.2:36900719-36900738 | None:intergenic | 10.0% |
| !! | GTTAATAATGAATTAAAAAG+AGG | + | chr8.2:36900720-36900739 | None:intergenic | 15.0% |
| !! | TAATATAAATATAGATGTAC+TGG | - | chr8.2:36900667-36900686 | MS.gene65563:intron | 15.0% |
| !! | AAAGAATTGTTTCATGTAAA+CGG | - | chr8.2:36899816-36899835 | MS.gene65563:CDS | 20.0% |
| !! | AAATTAAAACCTATGAAACA+CGG | + | chr8.2:36899308-36899327 | None:intergenic | 20.0% |
| !! | AACAAACAGATAATAACAAA+AGG | + | chr8.2:36900097-36900116 | None:intergenic | 20.0% |
| !! | ATTTCTTCCACATAAAATAA+AGG | + | chr8.2:36899078-36899097 | None:intergenic | 20.0% |
| !! | TTAATACAGATGAAATATTG+TGG | - | chr8.2:36899524-36899543 | MS.gene65563:CDS | 20.0% |
| !! | TTACATGAAACAATTCTTTA+AGG | + | chr8.2:36899815-36899834 | None:intergenic | 20.0% |
| !! | TTTCTTCCACATAAAATAAA+GGG | + | chr8.2:36899077-36899096 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTATTGTATATTG+TGG | - | chr8.2:36899473-36899492 | MS.gene65563:intron | 20.0% |
| !!! | TTAATTATGTGATTTTCTCA+CGG | - | chr8.2:36899247-36899266 | MS.gene65563:CDS | 20.0% |
| !!! | TTTAATCCCTTTATTTTATG+TGG | - | chr8.2:36899068-36899087 | MS.gene65563:CDS | 20.0% |
| ! | ATTTAATGAAAAGCTTAAGG+AGG | - | chr8.2:36900248-36900267 | MS.gene65563:CDS | 25.0% |
| ! | GCTATTTAATGAAAAGCTTA+AGG | - | chr8.2:36900245-36900264 | MS.gene65563:CDS | 25.0% |
| ! | TTAACTCAGTATGATATAGT+AGG | - | chr8.2:36900069-36900088 | MS.gene65563:intron | 25.0% |
| !! | AAACTTGTTTGAAACTAGTT+AGG | - | chr8.2:36900397-36900416 | MS.gene65563:CDS | 25.0% |
| !! | ATTTTGTCATTGAGAAAGAT+GGG | - | chr8.2:36900625-36900644 | MS.gene65563:intron | 25.0% |
| !! | GTAAAAATTGATAGCTTGAA+GGG | - | chr8.2:36899576-36899595 | MS.gene65563:CDS | 25.0% |
| !! | TTTTCATTAAATAGCATGCA+TGG | + | chr8.2:36900240-36900259 | None:intergenic | 25.0% |
| !!! | GAAAATTTTTCAGTAGTGAA+TGG | + | chr8.2:36900531-36900550 | None:intergenic | 25.0% |
| !!! | GTTTTTATTTTTCAGCATCA+TGG | - | chr8.2:36899610-36899629 | MS.gene65563:CDS | 25.0% |
| AATTAAAAAGAGGGAGTGAT+GGG | + | chr8.2:36900710-36900729 | None:intergenic | 30.0% | |
| ACAAAAAGCTGAAGGAAAAT+GGG | - | chr8.2:36900274-36900293 | MS.gene65563:CDS | 30.0% | |
| AGAGTTGAAAGATATAGAAG+AGG | - | chr8.2:36899953-36899972 | MS.gene65563:CDS | 30.0% | |
| ATACCCTTTCACATTAGAAA+GGG | - | chr8.2:36899926-36899945 | MS.gene65563:CDS | 30.0% | |
| ATTTCTAAGTCGCAAATTCA+AGG | - | chr8.2:36901001-36901020 | MS.gene65563:intron | 30.0% | |
| CTTATGACAATTGTTTGAAG+TGG | - | chr8.2:36899496-36899515 | MS.gene65563:CDS | 30.0% | |
| CTTGGAAAAGTAGTTGTTAA+AGG | + | chr8.2:36899745-36899764 | None:intergenic | 30.0% | |
| GGAGAGAATAAAAGAAATAG+AGG | - | chr8.2:36901133-36901152 | MS.gene65563:intron | 30.0% | |
| TAAATGAACCACATAATCTG+TGG | + | chr8.2:36900122-36900141 | None:intergenic | 30.0% | |
| TACAAAAAGCTGAAGGAAAA+TGG | - | chr8.2:36900273-36900292 | MS.gene65563:CDS | 30.0% | |
| TTCAGTGTAATTACACATGT+CGG | + | chr8.2:36899148-36899167 | None:intergenic | 30.0% | |
| ! | GATTTTGTCATTGAGAAAGA+TGG | - | chr8.2:36900624-36900643 | MS.gene65563:intron | 30.0% |
| ! | GGTAAAAATTGATAGCTTGA+AGG | - | chr8.2:36899575-36899594 | MS.gene65563:CDS | 30.0% |
| ! | GTTTTACTTGAGTTTTCTTG+TGG | - | chr8.2:36899445-36899464 | MS.gene65563:intron | 30.0% |
| !!! | ATGTCATTTTCTCATGATGT+CGG | - | chr8.2:36899170-36899189 | MS.gene65563:CDS | 30.0% |
| !!! | TCTCATATTTTGAAACTCTC+AGG | - | chr8.2:36899554-36899573 | MS.gene65563:CDS | 30.0% |
| ACATCAAGGAAAAGTCAGAT+TGG | + | chr8.2:36900145-36900164 | None:intergenic | 35.0% | |
| AGATGATATCACAAAGTCAC+GGG | + | chr8.2:36900024-36900043 | None:intergenic | 35.0% | |
| ATATAGAAGAGGAAGCTAAG+AGG | - | chr8.2:36899964-36899983 | MS.gene65563:intron | 35.0% | |
| ATTAAAAAGAGGGAGTGATG+GGG | + | chr8.2:36900709-36900728 | None:intergenic | 35.0% | |
| ATTATCCGTGAATATGGAAC+TGG | - | chr8.2:36899900-36899919 | MS.gene65563:CDS | 35.0% | |
| CAAAAAGCTGAAGGAAAATG+GGG | - | chr8.2:36900275-36900294 | MS.gene65563:CDS | 35.0% | |
| CAGATGATATCACAAAGTCA+CGG | + | chr8.2:36900025-36900044 | None:intergenic | 35.0% | |
| CTCCTTTGATGAATTCTTTG+CGG | - | chr8.2:36900935-36900954 | MS.gene65563:intron | 35.0% | |
| GAACCCTTTCTAATGTGAAA+GGG | + | chr8.2:36899932-36899951 | None:intergenic | 35.0% | |
| GAATTAAAAAGAGGGAGTGA+TGG | + | chr8.2:36900711-36900730 | None:intergenic | 35.0% | |
| GATACCCTTTCACATTAGAA+AGG | - | chr8.2:36899925-36899944 | MS.gene65563:CDS | 35.0% | |
| GTAATTATATGTGTCCGTGT+CGG | + | chr8.2:36899216-36899235 | None:intergenic | 35.0% | |
| GTTCACATTATCCGTGAATA+TGG | - | chr8.2:36899894-36899913 | MS.gene65563:CDS | 35.0% | |
| GTTTATACCCTTAGATGATG+AGG | - | chr8.2:36900314-36900333 | MS.gene65563:CDS | 35.0% | |
| TCGAAGAAGAAAGTCTCTAT+CGG | + | chr8.2:36898975-36898994 | None:intergenic | 35.0% | |
| TGAACCCTTTCTAATGTGAA+AGG | + | chr8.2:36899933-36899952 | None:intergenic | 35.0% | |
| TGAACTCGATGAAATAGCAA+AGG | - | chr8.2:36900551-36900570 | MS.gene65563:CDS | 35.0% | |
| TGTCTTGTGTCTTGATCTTA+AGG | + | chr8.2:36900869-36900888 | None:intergenic | 35.0% | |
| TTCCGCAAAGAATTCATCAA+AGG | + | chr8.2:36900940-36900959 | None:intergenic | 35.0% | |
| TTTATCTCCATTGCAGATTC+CGG | - | chr8.2:36900749-36900768 | MS.gene65563:intron | 35.0% | |
| TTTATTCTCTCCTCAGTGAA+AGG | + | chr8.2:36901125-36901144 | None:intergenic | 35.0% | |
| TTTGTTTGCCACAGATTATG+TGG | - | chr8.2:36900111-36900130 | MS.gene65563:CDS | 35.0% | |
| ! | AGGTATGCATCAATGAGTTT+TGG | + | chr8.2:36900849-36900868 | None:intergenic | 35.0% |
| ! | ATTCCGGTGTCAGAATTAAA+GGG | - | chr8.2:36900765-36900784 | MS.gene65563:intron | 35.0% |
| ! | TAAACTTTTTACCTGATCGC+CGG | + | chr8.2:36899002-36899021 | None:intergenic | 35.0% |
| ! | TCAAACACTTGAGTCAGTTT+TGG | - | chr8.2:36900587-36900606 | MS.gene65563:intron | 35.0% |
| ! | TTGCATTGATCGATGAAACT+GGG | - | chr8.2:36899850-36899869 | MS.gene65563:CDS | 35.0% |
| !! | AAACAAGTTTTGTCCTTGAG+AGG | + | chr8.2:36900387-36900406 | None:intergenic | 35.0% |
| !! | ATACCTATCTCTGAGATTGA+GGG | - | chr8.2:36900174-36900193 | MS.gene65563:CDS | 35.0% |
| !! | TATTTTTCAGCATCATGGTG+TGG | - | chr8.2:36899615-36899634 | MS.gene65563:CDS | 35.0% |
| !!! | TGAGTTTTGGAAGAAACTCA+CGG | + | chr8.2:36900836-36900855 | None:intergenic | 35.0% |
| AATTCTTTGCGGAAATGCCA+TGG | - | chr8.2:36900946-36900965 | MS.gene65563:intron | 40.0% | |
| AGAGACCAATATCGATCTCA+AGG | + | chr8.2:36899997-36900016 | None:intergenic | 40.0% | |
| AGATGCTTATCCTTTCACTG+AGG | - | chr8.2:36901112-36901131 | MS.gene65563:intron | 40.0% | |
| AGCTTGAAGGGAAAGAAACT+TGG | - | chr8.2:36899588-36899607 | MS.gene65563:CDS | 40.0% | |
| AGTGTCTCTGAATCTGAAAG+TGG | + | chr8.2:36899786-36899805 | None:intergenic | 40.0% | |
| ATCACAAACCCATCCATCTT+TGG | + | chr8.2:36901189-36901208 | None:intergenic | 40.0% | |
| ATCCTCCAGTTCCATATTCA+CGG | + | chr8.2:36899908-36899927 | None:intergenic | 40.0% | |
| CATTGAGAAAGATGGGAAGA+AGG | - | chr8.2:36900632-36900651 | MS.gene65563:intron | 40.0% | |
| CGAAGAAGAAAGTCTCTATC+GGG | + | chr8.2:36898974-36898993 | None:intergenic | 40.0% | |
| CTTTCAGATTCAGAGACACT+CGG | - | chr8.2:36899786-36899805 | MS.gene65563:CDS | 40.0% | |
| GACTCTTCCTCATCATCTAA+GGG | + | chr8.2:36900324-36900343 | None:intergenic | 40.0% | |
| GACTTTCTTCTTCGAAACAC+CGG | - | chr8.2:36898980-36898999 | MS.gene65563:CDS | 40.0% | |
| GGAGGTTTACAAAAAGCTGA+AGG | - | chr8.2:36900266-36900285 | MS.gene65563:CDS | 40.0% | |
| GGGAAAGTTGTTACTGAAGA+TGG | - | chr8.2:36899870-36899889 | MS.gene65563:CDS | 40.0% | |
| GTGTCTCTGAATCTGAAAGT+GGG | + | chr8.2:36899785-36899804 | None:intergenic | 40.0% | |
| TCACAAACCCATCCATCTTT+GGG | + | chr8.2:36901188-36901207 | None:intergenic | 40.0% | |
| TCATCGATCAATGCAAGATG+AGG | + | chr8.2:36899846-36899865 | None:intergenic | 40.0% | |
| TGACTCTTCCTCATCATCTA+AGG | + | chr8.2:36900325-36900344 | None:intergenic | 40.0% | |
| TGAGGAAGAGTCATTCAAGA+AGG | - | chr8.2:36900332-36900351 | MS.gene65563:CDS | 40.0% | |
| TGTCGGACATACTTAAACTG+AGG | + | chr8.2:36899131-36899150 | None:intergenic | 40.0% | |
| TTCCCCTTTAATTCTGACAC+CGG | + | chr8.2:36900771-36900790 | None:intergenic | 40.0% | |
| TTTCCCTCAATCTCAGAGAT+AGG | + | chr8.2:36900180-36900199 | None:intergenic | 40.0% | |
| ! | AAAGATGGATGGGTTTGTGA+TGG | - | chr8.2:36901188-36901207 | MS.gene65563:CDS | 40.0% |
| ! | AGTCGCAAATTCAAGGTATC+TGG | - | chr8.2:36901008-36901027 | MS.gene65563:intron | 40.0% |
| ! | CTTGCATTGATCGATGAAAC+TGG | - | chr8.2:36899849-36899868 | MS.gene65563:CDS | 40.0% |
| ! | GATTCCGGTGTCAGAATTAA+AGG | - | chr8.2:36900764-36900783 | MS.gene65563:intron | 40.0% |
| ! | TCTTTTCTCGAGTCACCAAA+GGG | + | chr8.2:36900981-36901000 | None:intergenic | 40.0% |
| ! | TTCCGGTGTCAGAATTAAAG+GGG | - | chr8.2:36900766-36900785 | MS.gene65563:intron | 40.0% |
| ! | TTCTTTTCTCGAGTCACCAA+AGG | + | chr8.2:36900982-36901001 | None:intergenic | 40.0% |
| !! | ACTACTTTTCCAAGATGCCA+TGG | - | chr8.2:36899751-36899770 | MS.gene65563:CDS | 40.0% |
| !! | GATACCTATCTCTGAGATTG+AGG | - | chr8.2:36900173-36900192 | MS.gene65563:CDS | 40.0% |
| AACAACCTCAAAGTCACCCT+TGG | + | chr8.2:36899694-36899713 | None:intergenic | 45.0% | |
| AACCTATGAAACACGGACAC+CGG | + | chr8.2:36899301-36899320 | None:intergenic | 45.0% | |
| ACAACCTCAAAGTCACCCTT+GGG | + | chr8.2:36899693-36899712 | None:intergenic | 45.0% | |
| AGACAATGATGCGCTTGAAG+TGG | - | chr8.2:36900884-36900903 | MS.gene65563:intron | 45.0% | |
| AGAGAAGCCCAAAGATGGAT+GGG | - | chr8.2:36901178-36901197 | MS.gene65563:CDS | 45.0% | |
| ATCATTCACTCCAACGTTGG+TGG | - | chr8.2:36899647-36899666 | MS.gene65563:CDS | 45.0% | |
| ATCCGTGAATATGGAACTGG+AGG | - | chr8.2:36899903-36899922 | MS.gene65563:CDS | 45.0% | |
| ATCTGGCCCAATAACAACGA+AGG | + | chr8.2:36900448-36900467 | None:intergenic | 45.0% | |
| ATGATCCTCAATGGCATCAG+CGG | + | chr8.2:36900493-36900512 | None:intergenic | 45.0% | |
| CCAACGTTGGAGTGAATGAT+CGG | + | chr8.2:36899647-36899666 | None:intergenic | 45.0% | |
| CCAATATCGATCTCAAGGAC+TGG | + | chr8.2:36899992-36900011 | None:intergenic | 45.0% | |
| CCAGTCCTTGAGATCGATAT+TGG | - | chr8.2:36899989-36900008 | MS.gene65563:intron | 45.0% | |
| CGATGAAATAGCAAAGGCCA+AGG | - | chr8.2:36900557-36900576 | MS.gene65563:intron | 45.0% | |
| CTGATGCCATTGAGGATCAT+GGG | - | chr8.2:36900493-36900512 | MS.gene65563:CDS | 45.0% | |
| GAGATTGAGGGAAAGACAGT+TGG | - | chr8.2:36900186-36900205 | MS.gene65563:CDS | 45.0% | |
| GGTATCTGTTGTGCACATCA+AGG | + | chr8.2:36900159-36900178 | None:intergenic | 45.0% | |
| GGTCTTCATCTCTAGTGACA+GGG | - | chr8.2:36900905-36900924 | MS.gene65563:intron | 45.0% | |
| GTCTATCCCATGATCCTCAA+TGG | + | chr8.2:36900502-36900521 | None:intergenic | 45.0% | |
| TACAACGAACTCTCTCCCAA+GGG | - | chr8.2:36899675-36899694 | MS.gene65563:CDS | 45.0% | |
| TGAAATAGCAAAGGCCAAGG+AGG | - | chr8.2:36900560-36900579 | MS.gene65563:intron | 45.0% | |
| TGGTCTTCATCTCTAGTGAC+AGG | - | chr8.2:36900904-36900923 | MS.gene65563:intron | 45.0% | |
| TTGAGAGGCAAGGATAACCA+AGG | + | chr8.2:36900372-36900391 | None:intergenic | 45.0% | |
| TTGGTTATCCTTGCCTCTCA+AGG | - | chr8.2:36900371-36900390 | MS.gene65563:CDS | 45.0% | |
| TTTGGAAGAAACTCACGGCA+TGG | + | chr8.2:36900831-36900850 | None:intergenic | 45.0% | |
| ! | AAGTGTTTGAGATGCCTCCT+TGG | + | chr8.2:36900577-36900596 | None:intergenic | 45.0% |
| ! | AGGAATTAGAAAGCGTGCCT+TGG | - | chr8.2:36900352-36900371 | MS.gene65563:CDS | 45.0% |
| ! | GGATGAAGAGTTTTCCCATC+TGG | + | chr8.2:36900465-36900484 | None:intergenic | 45.0% |
| ! | TCCCCTCCTTCGTTGTTATT+GGG | - | chr8.2:36900439-36900458 | MS.gene65563:CDS | 45.0% |
| ! | TCGTTGTTATTGGGCCAGAT+GGG | - | chr8.2:36900448-36900467 | MS.gene65563:CDS | 45.0% |
| ! | TTCGTTGTTATTGGGCCAGA+TGG | - | chr8.2:36900447-36900466 | MS.gene65563:CDS | 45.0% |
| !! | AGTTTTGTCCTTGAGAGGCA+AGG | + | chr8.2:36900382-36900401 | None:intergenic | 45.0% |
| !!! | CTTGAGTCAGTTTTGGTGTC+TGG | - | chr8.2:36900594-36900613 | MS.gene65563:intron | 45.0% |
| AAAGAGGCTCGAGATCTGGT+TGG | - | chr8.2:36901077-36901096 | MS.gene65563:intron | 50.0% | |
| AAGAGGCTCGAGATCTGGTT+GGG | - | chr8.2:36901078-36901097 | MS.gene65563:intron | 50.0% | |
| AGATCTGGTTGGGCTCTATG+GGG | - | chr8.2:36901088-36901107 | MS.gene65563:intron | 50.0% | |
| AGTCTCTATCGGGAGAAGAG+AGG | + | chr8.2:36898964-36898983 | None:intergenic | 50.0% | |
| ATCTGGCATTCCCAAGCTTG+TGG | - | chr8.2:36901025-36901044 | MS.gene65563:intron | 50.0% | |
| ATTCCCAAGCTTGTGGCGAT+CGG | - | chr8.2:36901032-36901051 | MS.gene65563:intron | 50.0% | |
| CCGATCATTCACTCCAACGT+TGG | - | chr8.2:36899644-36899663 | MS.gene65563:CDS | 50.0% | |
| CTCCCCTCCTTCGTTGTTAT+TGG | - | chr8.2:36900438-36900457 | MS.gene65563:CDS | 50.0% | |
| GAAGGAGAGAAGCCCAAAGA+TGG | - | chr8.2:36901173-36901192 | MS.gene65563:CDS | 50.0% | |
| GAGAGAAGCCCAAAGATGGA+TGG | - | chr8.2:36901177-36901196 | MS.gene65563:CDS | 50.0% | |
| GAGATCTGGTTGGGCTCTAT+GGG | - | chr8.2:36901087-36901106 | MS.gene65563:intron | 50.0% | |
| GCACAAAAAGCTGCCAAGGA+AGG | - | chr8.2:36901155-36901174 | MS.gene65563:CDS | 50.0% | |
| GCCCAATAACAACGAAGGAG+GGG | + | chr8.2:36900443-36900462 | None:intergenic | 50.0% | |
| GCTGATGCCATTGAGGATCA+TGG | - | chr8.2:36900492-36900511 | MS.gene65563:CDS | 50.0% | |
| GGCCCAATAACAACGAAGGA+GGG | + | chr8.2:36900444-36900463 | None:intergenic | 50.0% | |
| GTACAACGAACTCTCTCCCA+AGG | - | chr8.2:36899674-36899693 | MS.gene65563:CDS | 50.0% | |
| GTTGGAGTGAATGATCGGCA+CGG | + | chr8.2:36899642-36899661 | None:intergenic | 50.0% | |
| TAATGCCGCTGATGCCATTG+AGG | - | chr8.2:36900485-36900504 | MS.gene65563:CDS | 50.0% | |
| TCAATGGCATCAGCGGCATT+AGG | + | chr8.2:36900486-36900505 | None:intergenic | 50.0% | |
| TCTGACACCGGAATCTGCAA+TGG | + | chr8.2:36900759-36900778 | None:intergenic | 50.0% | |
| TGGCCCAATAACAACGAAGG+AGG | + | chr8.2:36900445-36900464 | None:intergenic | 50.0% | |
| TTCCGGTGTCCGTGTTTCAT+AGG | - | chr8.2:36899296-36899315 | MS.gene65563:CDS | 50.0% | |
| TTGTACACCTCCACCAACGT+TGG | + | chr8.2:36899660-36899679 | None:intergenic | 50.0% | |
| TTTGGGCTTCTCTCCTTCCT+TGG | + | chr8.2:36901171-36901190 | None:intergenic | 50.0% | |
| ! | AGAGGCACAAAAAGCTGCCA+AGG | - | chr8.2:36901151-36901170 | MS.gene65563:CDS | 50.0% |
| ! | ATTCACTCCAACGTTGGTGG+AGG | - | chr8.2:36899650-36899669 | MS.gene65563:CDS | 50.0% |
| ! | CTTTTCCAAGATGCCATGGC+TGG | - | chr8.2:36899755-36899774 | MS.gene65563:CDS | 50.0% |
| !! | GGAAAATGGGGAGCACTTTG+AGG | - | chr8.2:36900287-36900306 | MS.gene65563:CDS | 50.0% |
| CACGAAAGAGGCTCGAGATC+TGG | - | chr8.2:36901073-36901092 | MS.gene65563:intron | 55.0% | |
| CGAGATCTGGTTGGGCTCTA+TGG | - | chr8.2:36901086-36901105 | MS.gene65563:intron | 55.0% | |
| CTCTCCCAAGGGTGACTTTG+AGG | - | chr8.2:36899686-36899705 | MS.gene65563:CDS | 55.0% | |
| CTTTGCGGAAATGCCATGGC+TGG | - | chr8.2:36900950-36900969 | MS.gene65563:intron | 55.0% | |
| GAAAGTGGGATAGCCAGCCA+TGG | + | chr8.2:36899771-36899790 | None:intergenic | 55.0% | |
| GAGCCTCTTTCGTGACAGTC+AGG | + | chr8.2:36901067-36901086 | None:intergenic | 55.0% | |
| GATAGCCAGCCATGGCATCT+TGG | + | chr8.2:36899763-36899782 | None:intergenic | 55.0% | |
| GGAAGAAACTCACGGCATGG+AGG | + | chr8.2:36900828-36900847 | None:intergenic | 55.0% | |
| GTCCGTGTACGTATCCGACA+CGG | - | chr8.2:36899199-36899218 | MS.gene65563:CDS | 55.0% | |
| GTCCGTGTCGGATACGTACA+CGG | + | chr8.2:36899204-36899223 | None:intergenic | 55.0% | |
| TCCTCTACTTCTCAGCCCAC+TGG | - | chr8.2:36900799-36900818 | MS.gene65563:intron | 55.0% | |
| TCTTCGAAACACCGGCGATC+AGG | - | chr8.2:36898988-36899007 | MS.gene65563:CDS | 55.0% | |
| TGGCCTGACTGTCACGAAAG+AGG | - | chr8.2:36901061-36901080 | MS.gene65563:intron | 55.0% | |
| TTCGTGACAGTCAGGCCACT+TGG | + | chr8.2:36901059-36901078 | None:intergenic | 55.0% | |
| !! | ACCAGTGGGCTGAGAAGTAG+AGG | + | chr8.2:36900803-36900822 | None:intergenic | 55.0% |
| !! | AGTGGGCTGAGAAGTAGAGG+AGG | + | chr8.2:36900800-36900819 | None:intergenic | 55.0% |
| ACGGCATGGAGGACACCAGT+GGG | + | chr8.2:36900817-36900836 | None:intergenic | 60.0% | |
| CCATGGCTGGCACTTCCCTT+TGG | - | chr8.2:36900963-36900982 | MS.gene65563:intron | 60.0% | |
| CTTGTGGCGATCGGACCAAG+TGG | - | chr8.2:36901041-36901060 | MS.gene65563:intron | 60.0% | |
| GGTCCGATCGCCACAAGCTT+GGG | + | chr8.2:36901038-36901057 | None:intergenic | 60.0% | |
| GTCAGTGTCCGCGTCGTTTC+CGG | - | chr8.2:36899279-36899298 | MS.gene65563:CDS | 60.0% | |
| TGGTCCGATCGCCACAAGCT+TGG | + | chr8.2:36901039-36901058 | None:intergenic | 60.0% | |
| !! | CCAAAGGGAAGTGCCAGCCA+TGG | + | chr8.2:36900966-36900985 | None:intergenic | 60.0% |
| CACGGACACCGGAAACGACG+CGG | + | chr8.2:36899290-36899309 | None:intergenic | 65.0% | |
| CACGGCATGGAGGACACCAG+TGG | + | chr8.2:36900818-36900837 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 36898917 | 36901232 | 36898917 | ID=MS.gene65563 |
| chr8.2 | mRNA | 36898917 | 36901232 | 36898917 | ID=MS.gene65563.t1;Parent=MS.gene65563 |
| chr8.2 | exon | 36901140 | 36901232 | 36901140 | ID=MS.gene65563.t1.exon1;Parent=MS.gene65563.t1 |
| chr8.2 | CDS | 36901140 | 36901232 | 36901140 | ID=cds.MS.gene65563.t1;Parent=MS.gene65563.t1 |
| chr8.2 | exon | 36900094 | 36900573 | 36900094 | ID=MS.gene65563.t1.exon2;Parent=MS.gene65563.t1 |
| chr8.2 | CDS | 36900094 | 36900573 | 36900094 | ID=cds.MS.gene65563.t1;Parent=MS.gene65563.t1 |
| chr8.2 | exon | 36899496 | 36899975 | 36899496 | ID=MS.gene65563.t1.exon3;Parent=MS.gene65563.t1 |
| chr8.2 | CDS | 36899496 | 36899975 | 36899496 | ID=cds.MS.gene65563.t1;Parent=MS.gene65563.t1 |
| chr8.2 | exon | 36898917 | 36899384 | 36898917 | ID=MS.gene65563.t1.exon4;Parent=MS.gene65563.t1 |
| chr8.2 | CDS | 36898917 | 36899384 | 36898917 | ID=cds.MS.gene65563.t1;Parent=MS.gene65563.t1 |
| Gene Sequence |
| Protein sequence |
