Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65784.t1 | XP_003598620.2 | 100 | 71 | 0 | 0 | 1 | 71 | 1 | 71 | 4.30E-18 | 100.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65784.t1 | G7IYV2 | 100.0 | 71 | 0 | 0 | 1 | 71 | 1 | 71 | 3.1e-18 | 100.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058238 | MS.gene65784 | 0.802678 | 5.01E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene65784 | 0.804548 | 2.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65784.t1 | MTR_3g017440 | 100.000 | 71 | 0 | 0 | 1 | 71 | 1 | 71 | 2.91e-44 | 137 |
| MS.gene65784.t1 | MTR_3g434780 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 4.02e-21 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65784.t1 | AT3G07910 | 64.286 | 70 | 25 | 0 | 1 | 70 | 1 | 70 | 1.72e-14 | 62.0 |
Find 28 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAAGATTAGGCATATT+GGG | 0.301939 | 3.2:+8771247 | MS.gene65784:CDS |
| GCCCTCAAGATTAGGCATAT+TGG | 0.350084 | 3.2:+8771246 | MS.gene65784:CDS |
| GTTGAAACCTTGCAGGTTCC+CGG | 0.358085 | 3.2:+8771222 | MS.gene65784:intron |
| TTATGATGCAATTAGGTATA+AGG | 0.363399 | 3.2:+8768285 | MS.gene65784:CDS |
| AGCACCGCCAACGGCGGCTC+CGG | 0.373829 | 3.2:-8768150 | None:intergenic |
| ATGGAACTTATGATGCAATT+AGG | 0.386653 | 3.2:+8768278 | MS.gene65784:CDS |
| GCTGCCGGAGCCGCCGTTGG+CGG | 0.397404 | 3.2:+8768146 | MS.gene65784:CDS |
| CCCAATATGCCTAATCTTGA+GGG | 0.415296 | 3.2:-8771247 | None:intergenic |
| GTGGCTGCCGGAGCCGCCGT+TGG | 0.420712 | 3.2:+8768143 | MS.gene65784:CDS |
| CATATTGGGCAGGCCACTAT+AGG | 0.421386 | 3.2:+8771261 | MS.gene65784:CDS |
| AGGTTCCTGCTGCAAGGAAC+AGG | 0.421943 | 3.2:-8771302 | None:intergenic |
| TTTAGCCTGTTCCTTGCAGC+AGG | 0.452757 | 3.2:+8771297 | MS.gene65784:CDS |
| ATGCCTAATCTTGAGGGCTC+CGG | 0.459658 | 3.2:-8771241 | None:intergenic |
| TTACTCAATCGCGTGGCTGC+CGG | 0.471994 | 3.2:+8768131 | MS.gene65784:CDS |
| TGCCTAATCTTGAGGGCTCC+GGG | 0.475669 | 3.2:-8771240 | None:intergenic |
| GCCGCCGTTGGCGGTGCTAT+CGG | 0.476260 | 3.2:+8768155 | MS.gene65784:CDS |
| TACAGCTGCACTTCCTATAG+TGG | 0.486161 | 3.2:-8771274 | None:intergenic |
| GGTGCTATCGGTGGCGCCGT+CGG | 0.509662 | 3.2:+8768167 | MS.gene65784:CDS |
| TTCCCGGAGCCCTCAAGATT+AGG | 0.511503 | 3.2:+8771238 | MS.gene65784:CDS |
| TGGCATGTAGGTGCTGTGTA+TGG | 0.521686 | 3.2:+8768259 | MS.gene65784:intron |
| GCCCAATATGCCTAATCTTG+AGG | 0.531529 | 3.2:-8771248 | None:intergenic |
| GCCGTTGGCGGTGCTATCGG+TGG | 0.538241 | 3.2:+8768158 | MS.gene65784:CDS |
| CAAGATTAGGCATATTGGGC+AGG | 0.544075 | 3.2:+8771251 | MS.gene65784:CDS |
| GCCACCGATAGCACCGCCAA+CGG | 0.566236 | 3.2:-8768159 | None:intergenic |
| AAGCTAGTGAGAACGTATCA+AGG | 0.575346 | 3.2:-8771322 | None:intergenic |
| ACCGATAGCACCGCCAACGG+CGG | 0.586724 | 3.2:-8768156 | None:intergenic |
| GTATCAAGGTTCCTGCTGCA+AGG | 0.609585 | 3.2:-8771308 | None:intergenic |
| AGACAGCTTACTCAATCGCG+TGG | 0.700603 | 3.2:+8768124 | MS.gene65784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGAAAAAATTAATAAAAAT+TGG | - | chr3.2:8768328-8768347 | None:intergenic | 10.0% |
| !! | TGATATGATAATAATTATAA+TGG | + | chr3.2:8770782-8770801 | MS.gene65784:intron | 10.0% |
| !! | ATATTTAACTAAGGATTTAA+GGG | - | chr3.2:8769424-8769443 | None:intergenic | 15.0% |
| !! | TTATAAGAAAGTAAATTGAT+TGG | + | chr3.2:8769345-8769364 | MS.gene65784:intron | 15.0% |
| !! | TTTATTGAAGAATGAAATTA+AGG | + | chr3.2:8768470-8768489 | MS.gene65784:intron | 15.0% |
| !!! | ATTTTAAAACACTTCATATA+AGG | + | chr3.2:8770699-8770718 | MS.gene65784:intron | 15.0% |
| !!! | TATATTTGGAATTTTATATG+TGG | + | chr3.2:8770406-8770425 | MS.gene65784:intron | 15.0% |
| !! | AATTTAAGGGATTATACATT+AGG | - | chr3.2:8768953-8768972 | None:intergenic | 20.0% |
| !! | ACTGTTATCGTTAAAATTTA+AGG | - | chr3.2:8768967-8768986 | None:intergenic | 20.0% |
| !! | AGACACATTTATTTATTTGT+AGG | - | chr3.2:8769152-8769171 | None:intergenic | 20.0% |
| !! | ATACTTTAACACTTGATATA+TGG | + | chr3.2:8769088-8769107 | MS.gene65784:intron | 20.0% |
| !! | ATAGACAATAATAGAATTAG+TGG | + | chr3.2:8770381-8770400 | MS.gene65784:intron | 20.0% |
| !! | CATATCTAATATTTGAACTT+TGG | + | chr3.2:8771011-8771030 | MS.gene65784:intron | 20.0% |
| !! | CTATACTAAATCATGTATAT+GGG | + | chr3.2:8770105-8770124 | MS.gene65784:intron | 20.0% |
| !! | CTGTTATCGTTAAAATTTAA+GGG | - | chr3.2:8768966-8768985 | None:intergenic | 20.0% |
| !! | GAATGTTACAATGTATATTA+CGG | + | chr3.2:8768704-8768723 | MS.gene65784:intron | 20.0% |
| !! | GATATTTAACTAAGGATTTA+AGG | - | chr3.2:8769425-8769444 | None:intergenic | 20.0% |
| !! | TAGACAATAATAGAATTAGT+GGG | + | chr3.2:8770382-8770401 | MS.gene65784:intron | 20.0% |
| !! | TATAAAAAATTAGTGGGAAA+TGG | + | chr3.2:8768644-8768663 | MS.gene65784:intron | 20.0% |
| !! | TCAGAGTATAAAAAATTAGT+GGG | + | chr3.2:8768638-8768657 | MS.gene65784:intron | 20.0% |
| !! | TCTATACTAAATCATGTATA+TGG | + | chr3.2:8770104-8770123 | MS.gene65784:intron | 20.0% |
| !! | TGTTGAATAACTAATTGAAA+AGG | + | chr3.2:8768378-8768397 | MS.gene65784:intron | 20.0% |
| !! | TTACTTATACATCCAATAAT+CGG | - | chr3.2:8768998-8769017 | None:intergenic | 20.0% |
| !! | TTCAGAGTATAAAAAATTAG+TGG | + | chr3.2:8768637-8768656 | MS.gene65784:intron | 20.0% |
| !! | TTGAATTCTTATTATTCTTG+CGG | + | chr3.2:8768904-8768923 | MS.gene65784:intron | 20.0% |
| !! | TTTCATTGAAATAAAAGAAG+AGG | + | chr3.2:8770830-8770849 | MS.gene65784:intron | 20.0% |
| !!! | GTTTGAAACTTAGTTATTTT+AGG | + | chr3.2:8769208-8769227 | MS.gene65784:intron | 20.0% |
| ! | AAATTCCAAATCAATAGACA+AGG | - | chr3.2:8770498-8770517 | None:intergenic | 25.0% |
| ! | AAGCATAATCAGTAAAGATT+TGG | + | chr3.2:8769381-8769400 | MS.gene65784:intron | 25.0% |
| ! | AATTCCAAATCAATAGACAA+GGG | - | chr3.2:8770497-8770516 | None:intergenic | 25.0% |
| ! | ACCAAGAAGCTAAAATATAA+TGG | + | chr3.2:8770674-8770693 | MS.gene65784:intron | 25.0% |
| ! | AGCATAATCAGTAAAGATTT+GGG | + | chr3.2:8769382-8769401 | MS.gene65784:intron | 25.0% |
| ! | ATACAAATTACCATCTTGTA+AGG | + | chr3.2:8769952-8769971 | MS.gene65784:intron | 25.0% |
| ! | ATATCACTTGTAACTAGAAA+AGG | - | chr3.2:8769828-8769847 | None:intergenic | 25.0% |
| ! | ATTGAAGAATGAAATTAAGG+TGG | + | chr3.2:8768473-8768492 | MS.gene65784:intron | 25.0% |
| ! | ATTGATTGATTGAGAAAAGA+AGG | - | chr3.2:8769739-8769758 | None:intergenic | 25.0% |
| ! | CCAAAAATTGAATAGAGAAT+AGG | + | chr3.2:8768857-8768876 | MS.gene65784:intron | 25.0% |
| ! | CCAAATGTATCATGTAATAA+AGG | + | chr3.2:8769053-8769072 | MS.gene65784:intron | 25.0% |
| ! | CCAAGAAGCTAAAATATAAT+GGG | + | chr3.2:8770675-8770694 | MS.gene65784:intron | 25.0% |
| ! | CCTTTATTACATGATACATT+TGG | - | chr3.2:8769056-8769075 | None:intergenic | 25.0% |
| ! | GACGAAATAATTAAGCAAAA+CGG | - | chr3.2:8768216-8768235 | None:intergenic | 25.0% |
| ! | GTGTAAGAAAATAAAGGAAA+AGG | + | chr3.2:8770255-8770274 | MS.gene65784:intron | 25.0% |
| ! | TAAGCTTCCAAATCTAAATA+AGG | - | chr3.2:8770582-8770601 | None:intergenic | 25.0% |
| ! | TAATTATCCTTAACTCTAAG+AGG | + | chr3.2:8769543-8769562 | MS.gene65784:intron | 25.0% |
| ! | TACTTATACATCCAATAATC+GGG | - | chr3.2:8768997-8769016 | None:intergenic | 25.0% |
| ! | TATCACTTGTAACTAGAAAA+GGG | - | chr3.2:8769827-8769846 | None:intergenic | 25.0% |
| ! | TCATCAGAAATAATCTCATA+GGG | + | chr3.2:8770132-8770151 | MS.gene65784:intron | 25.0% |
| ! | TCCATTCATGAAACATTTAA+AGG | + | chr3.2:8771087-8771106 | MS.gene65784:intron | 25.0% |
| ! | TCCTTTAAATGTTTCATGAA+TGG | - | chr3.2:8771091-8771110 | None:intergenic | 25.0% |
| ! | TGAATTACTAAGAAATTGAG+TGG | + | chr3.2:8768546-8768565 | MS.gene65784:intron | 25.0% |
| ! | TGAATTCTTATTATTCTTGC+GGG | + | chr3.2:8768905-8768924 | MS.gene65784:intron | 25.0% |
| ! | TTATGATGCAATTAGGTATA+AGG | + | chr3.2:8768285-8768304 | MS.gene65784:CDS | 25.0% |
| ! | TTGTACTAATCTCTATTACT+TGG | + | chr3.2:8771050-8771069 | MS.gene65784:intron | 25.0% |
| !! | ATCTTTACTGATTATGCTTA+AGG | - | chr3.2:8769380-8769399 | None:intergenic | 25.0% |
| !! | ATTAAGTGAAAAGGTATGAT+TGG | + | chr3.2:8769237-8769256 | MS.gene65784:intron | 25.0% |
| !! | CATATGTAGTTTGAAATCAA+AGG | - | chr3.2:8769789-8769808 | None:intergenic | 25.0% |
| !! | CCTATTCTCTATTCAATTTT+TGG | - | chr3.2:8768860-8768879 | None:intergenic | 25.0% |
| !! | GAGAAAGTGTAAGAAAATAA+AGG | + | chr3.2:8770249-8770268 | MS.gene65784:intron | 25.0% |
| !! | TACAAGATGGTAATTTGTAT+AGG | - | chr3.2:8769952-8769971 | None:intergenic | 25.0% |
| !!! | AAGTGTCAATTTTTTTTGAC+GGG | + | chr3.2:8769906-8769925 | MS.gene65784:intron | 25.0% |
| !!! | ATTCAACTTTAACTTGACAA+TGG | - | chr3.2:8769993-8770012 | None:intergenic | 25.0% |
| !!! | GAAGTGTCAATTTTTTTTGA+CGG | + | chr3.2:8769905-8769924 | MS.gene65784:intron | 25.0% |
| !!! | TAGAATTAGTGGGTTATATT+TGG | + | chr3.2:8770392-8770411 | MS.gene65784:intron | 25.0% |
| !!! | TGTCTATTGATTTGGAATTT+TGG | + | chr3.2:8770498-8770517 | MS.gene65784:intron | 25.0% |
| AAATGTGTCTAATTGCAATG+TGG | + | chr3.2:8769162-8769181 | MS.gene65784:intron | 30.0% | |
| AACCTAGTAAATATAGGACT+AGG | + | chr3.2:8769861-8769880 | MS.gene65784:intron | 30.0% | |
| AAGAAGCAATGCAAAAACTT+GGG | - | chr3.2:8769301-8769320 | None:intergenic | 30.0% | |
| AATATGACATCCTTACAAGA+TGG | - | chr3.2:8769965-8769984 | None:intergenic | 30.0% | |
| ACACTTGATATATGGTCTAA+AGG | + | chr3.2:8769096-8769115 | MS.gene65784:intron | 30.0% | |
| ACTAAATCATGTATATGGGA+TGG | + | chr3.2:8770109-8770128 | MS.gene65784:intron | 30.0% | |
| ACTATAACACAACACTAACA+TGG | + | chr3.2:8770621-8770640 | MS.gene65784:intron | 30.0% | |
| AGAAAGAAACTCCAAATAGT+TGG | + | chr3.2:8769461-8769480 | MS.gene65784:intron | 30.0% | |
| AGACCTAACCTAGTAAATAT+AGG | + | chr3.2:8769855-8769874 | MS.gene65784:intron | 30.0% | |
| AGGTTTCTGATTAAGTGAAA+AGG | + | chr3.2:8769228-8769247 | MS.gene65784:intron | 30.0% | |
| AGTCCTATATTTACTAGGTT+AGG | - | chr3.2:8769861-8769880 | None:intergenic | 30.0% | |
| ATGAAAATCATTCAAGCAAG+GGG | - | chr3.2:8770543-8770562 | None:intergenic | 30.0% | |
| ATGGAACTTATGATGCAATT+AGG | + | chr3.2:8768278-8768297 | MS.gene65784:CDS | 30.0% | |
| ATTAAGCAAAACGGTGAATA+AGG | - | chr3.2:8768207-8768226 | None:intergenic | 30.0% | |
| CACTTGATATATGGTCTAAA+GGG | + | chr3.2:8769097-8769116 | MS.gene65784:intron | 30.0% | |
| CATGAAAATCATTCAAGCAA+GGG | - | chr3.2:8770544-8770563 | None:intergenic | 30.0% | |
| CCAAGTTAAAACAAACAACA+AGG | - | chr3.2:8768614-8768633 | None:intergenic | 30.0% | |
| CCTAACCCTAAAAATATGTT+GGG | + | chr3.2:8770339-8770358 | MS.gene65784:intron | 30.0% | |
| CTAACCCTAAAAATATGTTG+GGG | + | chr3.2:8770340-8770359 | MS.gene65784:intron | 30.0% | |
| CTATAACACAACACTAACAT+GGG | + | chr3.2:8770622-8770641 | MS.gene65784:intron | 30.0% | |
| GAGAGACTGAAATATAGATT+AGG | + | chr3.2:8769650-8769669 | MS.gene65784:intron | 30.0% | |
| GCATAATCAGTAAAGATTTG+GGG | + | chr3.2:8769383-8769402 | MS.gene65784:intron | 30.0% | |
| GGAAATGTTGGAGAAATATT+AGG | + | chr3.2:8769183-8769202 | MS.gene65784:intron | 30.0% | |
| GTCATCAGAAATAATCTCAT+AGG | + | chr3.2:8770131-8770150 | MS.gene65784:intron | 30.0% | |
| GTTTCTTTCTTGTTAGTTAG+AGG | - | chr3.2:8769451-8769470 | None:intergenic | 30.0% | |
| TAAGAAGCAATGCAAAAACT+TGG | - | chr3.2:8769302-8769321 | None:intergenic | 30.0% | |
| TAATATCTGTGACTATGCAT+AGG | - | chr3.2:8769522-8769541 | None:intergenic | 30.0% | |
| TAATTGCAATGTGGAAATGT+TGG | + | chr3.2:8769171-8769190 | MS.gene65784:intron | 30.0% | |
| TACCCATCAAACTAAACTTA+TGG | - | chr3.2:8769022-8769041 | None:intergenic | 30.0% | |
| TATAACACAACACTAACATG+GGG | + | chr3.2:8770623-8770642 | MS.gene65784:intron | 30.0% | |
| TATACATTGTAACATTCACC+AGG | - | chr3.2:8768701-8768720 | None:intergenic | 30.0% | |
| TCTATATCATCTTGTATCCA+CGG | - | chr3.2:8769678-8769697 | None:intergenic | 30.0% | |
| TGATTTAGTATAGAGAACTG+TGG | - | chr3.2:8770098-8770117 | None:intergenic | 30.0% | |
| TGGATTTATGATGGTAATTG+TGG | + | chr3.2:8768566-8768585 | MS.gene65784:intron | 30.0% | |
| TTTATACCAGTGTACGATAT+TGG | - | chr3.2:8768741-8768760 | None:intergenic | 30.0% | |
| ! | ATGAGATCTTTTGTCCTTAA+TGG | + | chr3.2:8770015-8770034 | MS.gene65784:intron | 30.0% |
| ! | ATTTATGCATCACGTTGTTT+TGG | + | chr3.2:8771161-8771180 | MS.gene65784:intron | 30.0% |
| ! | GAAATTGAGTGGATTTATGA+TGG | + | chr3.2:8768557-8768576 | MS.gene65784:intron | 30.0% |
| ! | TCTATCGAATGATGTGTTTT+GGG | - | chr3.2:8770366-8770385 | None:intergenic | 30.0% |
| ! | TTTCACTGAACCAAATTTTG+TGG | + | chr3.2:8768239-8768258 | MS.gene65784:intron | 30.0% |
| !! | AAGCCATAAGTTTAGTTTGA+TGG | + | chr3.2:8769016-8769035 | MS.gene65784:intron | 30.0% |
| !! | AAGTAGATTGCTTGCTATAT+AGG | + | chr3.2:8769570-8769589 | MS.gene65784:intron | 30.0% |
| !! | AGAGAAGCCTTATTTAGATT+TGG | + | chr3.2:8770572-8770591 | MS.gene65784:intron | 30.0% |
| !! | AGCCATAAGTTTAGTTTGAT+GGG | + | chr3.2:8769017-8769036 | MS.gene65784:intron | 30.0% |
| !!! | CCAACATATTTTTAGGGTTA+GGG | - | chr3.2:8770341-8770360 | None:intergenic | 30.0% |
| !!! | CCCATTATATTTTAGCTTCT+TGG | - | chr3.2:8770678-8770697 | None:intergenic | 30.0% |
| !!! | CCTTGTTGTTTGTTTTAACT+TGG | + | chr3.2:8768611-8768630 | MS.gene65784:intron | 30.0% |
| AGAGGCAGGATATTTAACTA+AGG | - | chr3.2:8769433-8769452 | None:intergenic | 35.0% | |
| ATAACACAACACTAACATGG+GGG | + | chr3.2:8770624-8770643 | MS.gene65784:intron | 35.0% | |
| ATTCTTATTATTCTTGCGGG+AGG | + | chr3.2:8768908-8768927 | MS.gene65784:intron | 35.0% | |
| CCCTAACCCTAAAAATATGT+TGG | + | chr3.2:8770338-8770357 | MS.gene65784:intron | 35.0% | |
| CTATGTGTCTTTACCTCAAT+CGG | + | chr3.2:8769628-8769647 | MS.gene65784:intron | 35.0% | |
| GACCTAGTCCTATATTTACT+AGG | - | chr3.2:8769866-8769885 | None:intergenic | 35.0% | |
| GATTGAGGTAAAGACACATA+GGG | - | chr3.2:8769629-8769648 | None:intergenic | 35.0% | |
| GATTGGAATCGAGAAACAAA+AGG | + | chr3.2:8769254-8769273 | MS.gene65784:intron | 35.0% | |
| GCATGAAAATCATTCAAGCA+AGG | - | chr3.2:8770545-8770564 | None:intergenic | 35.0% | |
| GGAATCATCATCTAGTAAAG+TGG | - | chr3.2:8770077-8770096 | None:intergenic | 35.0% | |
| GGACAAATGAGAAGTTAGTA+AGG | - | chr3.2:8769768-8769787 | None:intergenic | 35.0% | |
| GTAACAAGCACCACAATAAA+AGG | - | chr3.2:8770441-8770460 | None:intergenic | 35.0% | |
| TAACTAAGGATTTAAGGGTG+TGG | - | chr3.2:8769419-8769438 | None:intergenic | 35.0% | |
| TAGTGGAATCATATTGTGGT+AGG | + | chr3.2:8768508-8768527 | MS.gene65784:intron | 35.0% | |
| TTCTTAGACAGCAGAAATCT+AGG | + | chr3.2:8769316-8769335 | MS.gene65784:intron | 35.0% | |
| ! | AACCAAATTTTGTGGCATGT+AGG | + | chr3.2:8768247-8768266 | MS.gene65784:intron | 35.0% |
| ! | AGCAGCTACTACATTTTGAA+TGG | - | chr3.2:8770216-8770235 | None:intergenic | 35.0% |
| ! | CTAAGTTTGCTCCAACTATT+TGG | - | chr3.2:8769475-8769494 | None:intergenic | 35.0% |
| ! | GTCTATCGAATGATGTGTTT+TGG | - | chr3.2:8770367-8770386 | None:intergenic | 35.0% |
| ! | GTGACTTTTGCCTTTTATTG+TGG | + | chr3.2:8770428-8770447 | MS.gene65784:intron | 35.0% |
| ! | TCTTTTGTCCTTAATGGAGT+TGG | + | chr3.2:8770021-8770040 | MS.gene65784:intron | 35.0% |
| ! | TGTGTAGTGGAATCATATTG+TGG | + | chr3.2:8768504-8768523 | MS.gene65784:intron | 35.0% |
| !!! | CCCAACATATTTTTAGGGTT+AGG | - | chr3.2:8770342-8770361 | None:intergenic | 35.0% |
| AAGATCGAGAGTAAGATTGG+AGG | - | chr3.2:8770191-8770210 | None:intergenic | 40.0% | |
| AGAACTTAGAAGACAAGTCC+TGG | + | chr3.2:8768680-8768699 | MS.gene65784:intron | 40.0% | |
| AGCAAAACGGTGAATAAGGA+TGG | - | chr3.2:8768203-8768222 | None:intergenic | 40.0% | |
| AGTGGGAAATGGAAGTTCTA+AGG | + | chr3.2:8768655-8768674 | MS.gene65784:intron | 40.0% | |
| AGTTAAGCTTTGCTACTCAG+AGG | + | chr3.2:8770281-8770300 | MS.gene65784:intron | 40.0% | |
| ATTGTGTCGTGTTCATGACA+TGG | + | chr3.2:8771119-8771138 | MS.gene65784:intron | 40.0% | |
| CACCTACATGCCACAAAATT+TGG | - | chr3.2:8768252-8768271 | None:intergenic | 40.0% | |
| CCCAATATGCCTAATCTTGA+GGG | - | chr3.2:8771250-8771269 | None:intergenic | 40.0% | |
| CCCTCAAGATTAGGCATATT+GGG | + | chr3.2:8771247-8771266 | MS.gene65784:CDS | 40.0% | |
| CGAGAAACAAAAGGAGAAAG+AGG | + | chr3.2:8769263-8769282 | MS.gene65784:intron | 40.0% | |
| CGATTGAGGTAAAGACACAT+AGG | - | chr3.2:8769630-8769649 | None:intergenic | 40.0% | |
| CTGATACCAATATCGTACAC+TGG | + | chr3.2:8768732-8768751 | MS.gene65784:intron | 40.0% | |
| CTTCACTCCTCTTAGAGTTA+AGG | - | chr3.2:8769553-8769572 | None:intergenic | 40.0% | |
| CTTTCTTGTTAGTTAGAGGC+AGG | - | chr3.2:8769447-8769466 | None:intergenic | 40.0% | |
| CTTTGATGTTGAAACCTTGC+AGG | + | chr3.2:8771215-8771234 | MS.gene65784:intron | 40.0% | |
| GATTGAGAAAAGAAGGCCTA+AGG | - | chr3.2:8769732-8769751 | None:intergenic | 40.0% | |
| GCAAAGATCGAGAGTAAGAT+TGG | - | chr3.2:8770194-8770213 | None:intergenic | 40.0% | |
| GGATGGTGAAAATTTACCGA+CGG | - | chr3.2:8768186-8768205 | None:intergenic | 40.0% | |
| GTAATTGTGGCCTAGTAAAG+AGG | + | chr3.2:8768579-8768598 | MS.gene65784:intron | 40.0% | |
| GTAGCTGCTATGTTTGATTG+TGG | + | chr3.2:8770227-8770246 | MS.gene65784:intron | 40.0% | |
| GTTAAGCTTTGCTACTCAGA+GGG | + | chr3.2:8770282-8770301 | MS.gene65784:intron | 40.0% | |
| TAACACAACACTAACATGGG+GGG | + | chr3.2:8770625-8770644 | MS.gene65784:intron | 40.0% | |
| TATTTCAGTCTCTCCGATTG+AGG | - | chr3.2:8769644-8769663 | None:intergenic | 40.0% | |
| TCAAGAGCTGTGAATGTGAA+GGG | + | chr3.2:8769124-8769143 | MS.gene65784:intron | 40.0% | |
| TTCAAGAGCTGTGAATGTGA+AGG | + | chr3.2:8769123-8769142 | MS.gene65784:intron | 40.0% | |
| TTGTGTCGTGTTCATGACAT+GGG | + | chr3.2:8771120-8771139 | MS.gene65784:intron | 40.0% | |
| ! | CAGTACGTTTTCCCGATTAT+TGG | + | chr3.2:8768983-8769002 | MS.gene65784:intron | 40.0% |
| ! | GAAATATAGATTAGGCACCG+TGG | + | chr3.2:8769658-8769677 | MS.gene65784:intron | 40.0% |
| ! | GCATCCCTTGTCTATTGATT+TGG | + | chr3.2:8770490-8770509 | MS.gene65784:intron | 40.0% |
| ! | TTGGGCCCCAACATATTTTT+AGG | - | chr3.2:8770348-8770367 | None:intergenic | 40.0% |
| ! | TTGTCCTTAATGGAGTTGGT+TGG | + | chr3.2:8770025-8770044 | MS.gene65784:intron | 40.0% |
| !! | TCATCTAGTAAAGTGGACTG+TGG | - | chr3.2:8770070-8770089 | None:intergenic | 40.0% |
| !! | TGGGCCCCAACATATTTTTA+GGG | - | chr3.2:8770347-8770366 | None:intergenic | 40.0% |
| CAAGATTAGGCATATTGGGC+AGG | + | chr3.2:8771251-8771270 | MS.gene65784:CDS | 45.0% | |
| CAGTTCTCTCAAACGCAACA+AGG | - | chr3.2:8769703-8769722 | None:intergenic | 45.0% | |
| CTTGTTGCGTTTGAGAGAAC+TGG | + | chr3.2:8769701-8769720 | MS.gene65784:intron | 45.0% | |
| GACCCACATTCCTCTTTACT+AGG | - | chr3.2:8768592-8768611 | None:intergenic | 45.0% | |
| GCCCAATATGCCTAATCTTG+AGG | - | chr3.2:8771251-8771270 | None:intergenic | 45.0% | |
| GCCCTCAAGATTAGGCATAT+TGG | + | chr3.2:8771246-8771265 | MS.gene65784:CDS | 45.0% | |
| GCTCGTCACATAAACACACA+TGG | - | chr3.2:8770738-8770757 | None:intergenic | 45.0% | |
| GGCCTAGTAAAGAGGAATGT+GGG | + | chr3.2:8768587-8768606 | MS.gene65784:intron | 45.0% | |
| TACAGCTGCACTTCCTATAG+TGG | - | chr3.2:8771277-8771296 | None:intergenic | 45.0% | |
| TGGCCTAGTAAAGAGGAATG+TGG | + | chr3.2:8768586-8768605 | MS.gene65784:intron | 45.0% | |
| TGTGTCGTGTTCATGACATG+GGG | + | chr3.2:8771121-8771140 | MS.gene65784:intron | 45.0% | |
| ! | GAAGCATTCAACTGCAGCTA+GGG | + | chr3.2:8768813-8768832 | MS.gene65784:intron | 45.0% |
| ! | GCTTCAAGCTTTGACTGTGA+TGG | - | chr3.2:8768798-8768817 | None:intergenic | 45.0% |
| ! | TGAAGCATTCAACTGCAGCT+AGG | + | chr3.2:8768812-8768831 | MS.gene65784:intron | 45.0% |
| ! | TTGTGGTGCTTGTTACAGCT+TGG | + | chr3.2:8770445-8770464 | MS.gene65784:intron | 45.0% |
| !!! | CACGTTGTTTTGGAGTGCAA+TGG | + | chr3.2:8771171-8771190 | MS.gene65784:intron | 45.0% |
| !!! | TATTTTTAGGGTTAGGGCCG+AGG | - | chr3.2:8770335-8770354 | None:intergenic | 45.0% |
| !!! | TTTGAAATTTTTTATTAAAA+TGG | + | chr3.2:8768437-8768456 | MS.gene65784:intron | 5.0% |
| AGACAGCTTACTCAATCGCG+TGG | + | chr3.2:8768124-8768143 | MS.gene65784:CDS | 50.0% | |
| ATGCCTAATCTTGAGGGCTC+CGG | - | chr3.2:8771244-8771263 | None:intergenic | 50.0% | |
| CATATTGGGCAGGCCACTAT+AGG | + | chr3.2:8771261-8771280 | MS.gene65784:CDS | 50.0% | |
| CCAGCCAACCAACTCCATTA+AGG | - | chr3.2:8770032-8770051 | None:intergenic | 50.0% | |
| GAGAGAACTGGACTCACCTT+AGG | + | chr3.2:8769713-8769732 | MS.gene65784:intron | 50.0% | |
| GGTGGTTGTGTGTTGTGTAG+TGG | + | chr3.2:8768491-8768510 | MS.gene65784:intron | 50.0% | |
| GTATCAAGGTTCCTGCTGCA+AGG | - | chr3.2:8771311-8771330 | None:intergenic | 50.0% | |
| GTTGAAACCTTGCAGGTTCC+CGG | + | chr3.2:8771222-8771241 | MS.gene65784:intron | 50.0% | |
| TTTAGCCTGTTCCTTGCAGC+AGG | + | chr3.2:8771297-8771316 | MS.gene65784:CDS | 50.0% | |
| ! | CCTTAATGGAGTTGGTTGGC+TGG | + | chr3.2:8770029-8770048 | MS.gene65784:intron | 50.0% |
| ! | TGGCATGTAGGTGCTGTGTA+TGG | + | chr3.2:8768259-8768278 | MS.gene65784:intron | 50.0% |
| AGCTGACCCATGATGGCCAT+GGG | + | chr3.2:8770305-8770324 | MS.gene65784:intron | 55.0% | |
| AGGTTCCTGCTGCAAGGAAC+AGG | - | chr3.2:8771305-8771324 | None:intergenic | 55.0% | |
| GTGTTCATGACATGGGGCGT+GGG | + | chr3.2:8771127-8771146 | MS.gene65784:intron | 55.0% | |
| TGCCTAATCTTGAGGGCTCC+GGG | - | chr3.2:8771243-8771262 | None:intergenic | 55.0% | |
| TTACTCAATCGCGTGGCTGC+CGG | + | chr3.2:8768131-8768150 | MS.gene65784:CDS | 55.0% | |
| TTCCCGGAGCCCTCAAGATT+AGG | + | chr3.2:8771238-8771257 | MS.gene65784:CDS | 55.0% | |
| AGGTCACCCCATGGCCATCA+TGG | - | chr3.2:8770315-8770334 | None:intergenic | 60.0% | |
| CAGAGGGAGCTGACCCATGA+TGG | + | chr3.2:8770298-8770317 | MS.gene65784:intron | 60.0% | |
| CGTGTTCATGACATGGGGCG+TGG | + | chr3.2:8771126-8771145 | MS.gene65784:intron | 60.0% | |
| GAGCTGACCCATGATGGCCA+TGG | + | chr3.2:8770304-8770323 | MS.gene65784:intron | 60.0% | |
| GCTGACCCATGATGGCCATG+GGG | + | chr3.2:8770306-8770325 | MS.gene65784:intron | 60.0% | |
| GGTCACCCCATGGCCATCAT+GGG | - | chr3.2:8770314-8770333 | None:intergenic | 60.0% | |
| TAACATGGGGGGCAGAGCAG+AGG | + | chr3.2:8770636-8770655 | MS.gene65784:intron | 60.0% | |
| TGATGGCCATGGGGTGACCT+CGG | + | chr3.2:8770315-8770334 | MS.gene65784:intron | 60.0% | |
| ACCGATAGCACCGCCAACGG+CGG | - | chr3.2:8768159-8768178 | None:intergenic | 65.0% | |
| GCCACCGATAGCACCGCCAA+CGG | - | chr3.2:8768162-8768181 | None:intergenic | 65.0% | |
| TTAGGGCCGAGGTCACCCCA+TGG | - | chr3.2:8770324-8770343 | None:intergenic | 65.0% | |
| GAGGGCTCCGGGAACCTGCA+AGG | - | chr3.2:8771232-8771251 | None:intergenic | 70.0% | |
| ! | GGTGCTATCGGTGGCGCCGT+CGG | + | chr3.2:8768167-8768186 | MS.gene65784:CDS | 70.0% |
| !! | GCCGCCGTTGGCGGTGCTAT+CGG | + | chr3.2:8768155-8768174 | MS.gene65784:CDS | 70.0% |
| !! | GCCGTTGGCGGTGCTATCGG+TGG | + | chr3.2:8768158-8768177 | MS.gene65784:CDS | 70.0% |
| AGCACCGCCAACGGCGGCTC+CGG | - | chr3.2:8768153-8768172 | None:intergenic | 75.0% | |
| ! | GCTGCCGGAGCCGCCGTTGG+CGG | + | chr3.2:8768146-8768165 | MS.gene65784:CDS | 80.0% |
| ! | GTGGCTGCCGGAGCCGCCGT+TGG | + | chr3.2:8768143-8768162 | MS.gene65784:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 8768116 | 8771341 | 8768116 | ID=MS.gene65784 |
| chr3.2 | mRNA | 8768116 | 8771341 | 8768116 | ID=MS.gene65784.t1;Parent=MS.gene65784 |
| chr3.2 | exon | 8768116 | 8768188 | 8768116 | ID=MS.gene65784.t1.exon1;Parent=MS.gene65784.t1 |
| chr3.2 | CDS | 8768116 | 8768188 | 8768116 | ID=cds.MS.gene65784.t1;Parent=MS.gene65784.t1 |
| chr3.2 | exon | 8768269 | 8768306 | 8768269 | ID=MS.gene65784.t1.exon2;Parent=MS.gene65784.t1 |
| chr3.2 | CDS | 8768269 | 8768306 | 8768269 | ID=cds.MS.gene65784.t1;Parent=MS.gene65784.t1 |
| chr3.2 | exon | 8771237 | 8771341 | 8771237 | ID=MS.gene65784.t1.exon3;Parent=MS.gene65784.t1 |
| chr3.2 | CDS | 8771237 | 8771341 | 8771237 | ID=cds.MS.gene65784.t1;Parent=MS.gene65784.t1 |
| Gene Sequence |
| Protein sequence |
