AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058238


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058238.t1 MTR_2g034010 100.000 110 0 0 1 110 1 110 1.88e-74 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058238.t1 AT3G06610 80.000 110 21 1 1 109 1 110 2.24e-56 170

Find 17 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAACAGTTGGACAAAA+AGG 0.270788 2.4:-56651731 MS.gene058238:intron
ACTCTGCTGTTGCATGTCTT+TGG 0.288649 2.4:+56654772 None:intergenic
CTGCTTCTGCTGAAGCTGAT+TGG 0.380996 2.4:-56654667 MS.gene058238:CDS
TGGAGACGAAGGAGTGGAGA+TGG 0.452107 2.4:-56654804 MS.gene058238:CDS
ATTGGAATGCTATGCGTTTG+AGG 0.478356 2.4:-56654649 MS.gene058238:intron
AGGACCTTGCGTGAGCATAA+AGG 0.482732 2.4:-56651700 MS.gene058238:CDS
AGCTTCAGCAGAAGCAGCAA+TGG 0.492964 2.4:+56654673 None:intergenic
GGAGGGTGGAGACGAAGGAG+TGG 0.517925 2.4:-56654810 MS.gene058238:CDS
AGAAGCAGCAATGGAAGCCA+TGG 0.542542 2.4:+56654682 None:intergenic
AACTCGTGTTCAAGAAGCCA+TGG 0.561938 2.4:-56654699 MS.gene058238:CDS
AGACGAAGGAGTGGAGATGG+TGG 0.620347 2.4:-56654801 MS.gene058238:CDS
GAACACGAGTTGAATCAAGC+TGG 0.629690 2.4:+56654711 None:intergenic
TATAATTGCAAACGAACTAG+AGG 0.633062 2.4:-56651828 MS.gene058238:intron
AAAATGGAGGGTGGAGACGA+AGG 0.644266 2.4:-56654815 MS.gene058238:CDS
CTAGTGAAGCAAATGACGAA+TGG 0.649500 2.4:+56651663 None:intergenic
ATCACCTTTATGCTCACGCA+AGG 0.659657 2.4:+56651696 None:intergenic
CAAGCTGGCGATCTTCAACG+CGG 0.793472 2.4:+56654726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTTAATTTTGAATTT+TGG - chr2.4:56653902-56653921 MS.gene058238:intron 10.0%
!!! AATTGTTAATTTTGAATTTT+GGG - chr2.4:56653903-56653922 MS.gene058238:intron 10.0%
!! AAATATCAAAAAAAGAACAA+AGG + chr2.4:56654251-56654270 None:intergenic 15.0%
!! AATAAGCTTAAAACATATTA+TGG - chr2.4:56652475-56652494 MS.gene058238:intron 15.0%
!!! AAAGTTTAATTTTTTCTGTA+TGG - chr2.4:56652029-56652048 MS.gene058238:intron 15.0%
!!! AAATTGCTAATTTTTGAATT+TGG - chr2.4:56653226-56653245 MS.gene058238:intron 15.0%
!!! AAGTTTAATTTTTTCTGTAT+GGG - chr2.4:56652030-56652049 MS.gene058238:intron 15.0%
!!! AATTGCTAATTTTTGAATTT+GGG - chr2.4:56653227-56653246 MS.gene058238:intron 15.0%
!!! AGTTCTTAAATTTTAATGTT+AGG - chr2.4:56654127-56654146 MS.gene058238:intron 15.0%
!!! TTAAATTTTAATGTTAGGTT+TGG - chr2.4:56654132-56654151 MS.gene058238:intron 15.0%
!! AAAAACTATAGATCAAACTA+TGG - chr2.4:56653096-56653115 MS.gene058238:intron 20.0%
!! TATAATACCAGAACATAAAA+AGG + chr2.4:56654374-56654393 None:intergenic 20.0%
!!! AACTTAATGATGGAAATTAT+AGG - chr2.4:56652635-56652654 MS.gene058238:intron 20.0%
!!! ATGTATTTTGATTGAATCAT+AGG - chr2.4:56654580-56654599 MS.gene058238:intron 20.0%
!!! ATTGCTAATTTTTGAATTTG+GGG - chr2.4:56653228-56653247 MS.gene058238:intron 20.0%
!!! CATATAGATTTTAAGTTAGA+TGG - chr2.4:56652131-56652150 MS.gene058238:intron 20.0%
!!! GTAAATTTCTAGATAGATTT+CGG + chr2.4:56654694-56654713 None:intergenic 20.0%
!!! TACTTTTCTTATATAACAGT+TGG - chr2.4:56654735-56654754 MS.gene058238:CDS 20.0%
!!! TATTCCTATTTTTTCTTTGT+AGG + chr2.4:56653571-56653590 None:intergenic 20.0%
!!! TCATATGTTCAACATTTTAA+TGG + chr2.4:56654027-56654046 None:intergenic 20.0%
!!! TGTATTTTGATTGAATCATA+GGG - chr2.4:56654581-56654600 MS.gene058238:intron 20.0%
! AAAGATGATGAAAGATCATT+AGG - chr2.4:56653269-56653288 MS.gene058238:intron 25.0%
! AATCTATTTGCAAAAAAGGT+GGG + chr2.4:56653201-56653220 None:intergenic 25.0%
! ACAATACTTGTAATATTGCA+TGG - chr2.4:56653477-56653496 MS.gene058238:intron 25.0%
! ACATAAGTAGTAAGAAATAG+AGG - chr2.4:56653064-56653083 MS.gene058238:intron 25.0%
! ACCTAAGTACAATAAGTATA+TGG - chr2.4:56652601-56652620 MS.gene058238:intron 25.0%
! ATAGAGATTTCGAAGTAAAT+AGG - chr2.4:56653773-56653792 MS.gene058238:intron 25.0%
! ATGCAATTCTAACTTAATGA+TGG - chr2.4:56652625-56652644 MS.gene058238:intron 25.0%
! ATTATATGCTGTATTACTAG+TGG - chr2.4:56654388-56654407 MS.gene058238:intron 25.0%
! ATTTCTATACATAACTTCAG+GGG + chr2.4:56654489-56654508 None:intergenic 25.0%
! CATAAGTAGTAAGAAATAGA+GGG - chr2.4:56653065-56653084 MS.gene058238:intron 25.0%
! GATTTCTATACATAACTTCA+GGG + chr2.4:56654490-56654509 None:intergenic 25.0%
! TAAAGATGCGAATCTTATAT+TGG - chr2.4:56653538-56653557 MS.gene058238:intron 25.0%
! TACTTAGGTTCTATTTGAAT+TGG + chr2.4:56652590-56652609 None:intergenic 25.0%
! TATATAACAGTTGGACAAAA+AGG - chr2.4:56654744-56654763 MS.gene058238:CDS 25.0%
! TATTCAATGAACCTAAAATG+TGG - chr2.4:56652356-56652375 MS.gene058238:intron 25.0%
! TATTTACTTCGAAATCTCTA+TGG + chr2.4:56653774-56653793 None:intergenic 25.0%
! TCAATGATTAAAGAGAGATA+GGG - chr2.4:56653596-56653615 MS.gene058238:intron 25.0%
! TCCATATACTTATTGTACTT+AGG + chr2.4:56652605-56652624 None:intergenic 25.0%
! TCTCAATCTATTTGCAAAAA+AGG + chr2.4:56653205-56653224 None:intergenic 25.0%
! TGATTTCTATACATAACTTC+AGG + chr2.4:56654491-56654510 None:intergenic 25.0%
! TTAATGACTCTATAAACAAG+TGG - chr2.4:56652087-56652106 MS.gene058238:intron 25.0%
! TTCAATGATTAAAGAGAGAT+AGG - chr2.4:56653595-56653614 MS.gene058238:intron 25.0%
! TTTAGTTATTGGGAATTAGA+GGG - chr2.4:56651935-56651954 MS.gene058238:intron 25.0%
!! AGAAAAGTATGTTAACTGAT+TGG + chr2.4:56654724-56654743 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr2.4:56652218-56652237 None:intergenic 25.0%
!! CATTGATTAACATCAATATC+TGG - chr2.4:56652294-56652313 MS.gene058238:intron 25.0%
!! CTATTTCTTACTACTTATGT+AGG + chr2.4:56653064-56653083 None:intergenic 25.0%
!! GTTTGATCTATAGTTTTTCT+TGG + chr2.4:56653094-56653113 None:intergenic 25.0%
!! TCAATATCTGGTCTATATTT+TGG - chr2.4:56652306-56652325 MS.gene058238:intron 25.0%
!! TCTAACATGTTTTCTACAAT+AGG + chr2.4:56653627-56653646 None:intergenic 25.0%
!! TCTGAAATTTCTAAAAGCAT+AGG - chr2.4:56654220-56654239 MS.gene058238:intron 25.0%
!! TTGATTCAGTTTTTCTTTGT+GGG - chr2.4:56651865-56651884 MS.gene058238:CDS 25.0%
!! TTGCTAATTTTTGAATTTGG+GGG - chr2.4:56653229-56653248 MS.gene058238:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG + chr2.4:56652259-56652278 None:intergenic 25.0%
!!! AACCTAAAATGTGGTTTTTT+AGG - chr2.4:56652365-56652384 MS.gene058238:intron 25.0%
!!! AGAATGAGGTTTTTAGTTAT+TGG - chr2.4:56651924-56651943 MS.gene058238:intron 25.0%
!!! AGATTTTAAGTTAGATGGTT+GGG - chr2.4:56652136-56652155 MS.gene058238:intron 25.0%
!!! ATTGATTCAGTTTTTCTTTG+TGG - chr2.4:56651864-56651883 MS.gene058238:CDS 25.0%
!!! GAATGAGGTTTTTAGTTATT+GGG - chr2.4:56651925-56651944 MS.gene058238:intron 25.0%
!!! GAGTAATGAATAAGTTGATT+CGG - chr2.4:56653319-56653338 MS.gene058238:intron 25.0%
!!! TAAAATGTGGTTTTTTAGGT+GGG - chr2.4:56652369-56652388 MS.gene058238:intron 25.0%
!!! TAAATACTCAAGTTGAAAAC+TGG + chr2.4:56654199-56654218 None:intergenic 25.0%
!!! TAGATTTTAAGTTAGATGGT+TGG - chr2.4:56652135-56652154 MS.gene058238:intron 25.0%
!!! TTTTAGTTATTGGGAATTAG+AGG - chr2.4:56651934-56651953 MS.gene058238:intron 25.0%
AAATGTTGAACATATGAAGC+AGG - chr2.4:56654030-56654049 MS.gene058238:intron 30.0%
AACTTTACTGCACAACTATA+AGG - chr2.4:56652831-56652850 MS.gene058238:intron 30.0%
AATGTTGAACATATGAAGCA+GGG - chr2.4:56654031-56654050 MS.gene058238:intron 30.0%
AATTTAAGAACTTTGTCTCG+AGG + chr2.4:56654119-56654138 None:intergenic 30.0%
ATAGAGGAAGTCAATATTGT+AGG - chr2.4:56653743-56653762 MS.gene058238:intron 30.0%
ATCAAACTATGGTGATTTAG+AGG - chr2.4:56653107-56653126 MS.gene058238:intron 30.0%
ATCTATTTGCAAAAAAGGTG+GGG + chr2.4:56653200-56653219 None:intergenic 30.0%
ATGCGAATCTTATATTGGAT+TGG - chr2.4:56653543-56653562 MS.gene058238:intron 30.0%
CAATCTATTTGCAAAAAAGG+TGG + chr2.4:56653202-56653221 None:intergenic 30.0%
CGAAGTAAATAGGTTATCTT+CGG - chr2.4:56653783-56653802 MS.gene058238:intron 30.0%
CTTCATCCAAAGTTATGAAA+AGG - chr2.4:56652700-56652719 MS.gene058238:intron 30.0%
GTACATCATTACAATGCAAA+GGG + chr2.4:56654352-56654371 None:intergenic 30.0%
GTTGAAATTTACCAGTGTTT+GGG - chr2.4:56654053-56654072 MS.gene058238:intron 30.0%
TAGAGGAAGATGTAAACAAT+AGG - chr2.4:56652723-56652742 MS.gene058238:intron 30.0%
TATAATTGCAAACGAACTAG+AGG - chr2.4:56654647-56654666 MS.gene058238:intron 30.0%
TATTGCATGGAATTGAATGT+TGG - chr2.4:56653490-56653509 MS.gene058238:intron 30.0%
TGGTGTCTACAAAGAAAAAT+AGG - chr2.4:56652947-56652966 MS.gene058238:intron 30.0%
TTAGTTATTGGGAATTAGAG+GGG - chr2.4:56651936-56651955 MS.gene058238:intron 30.0%
TTATCTTTGAACTTGATGCA+TGG - chr2.4:56653138-56653157 MS.gene058238:intron 30.0%
TTTACAAATACAGCCAAAAC+AGG + chr2.4:56654530-56654549 None:intergenic 30.0%
! AAAACCCTTTTCCATTAGAT+GGG + chr2.4:56653859-56653878 None:intergenic 30.0%
! CACCTAAAAAACCACATTTT+AGG + chr2.4:56652370-56652389 None:intergenic 30.0%
! CTTTTCATAACTTTGGATGA+AGG + chr2.4:56652702-56652721 None:intergenic 30.0%
! GAAATTTCTAAAAGCATAGG+AGG - chr2.4:56654223-56654242 MS.gene058238:intron 30.0%
! TGATGTACCTTTTTATGTTC+TGG - chr2.4:56654364-56654383 MS.gene058238:intron 30.0%
! TGCTATGTTTTCTACAATGA+GGG + chr2.4:56653003-56653022 None:intergenic 30.0%
!! AAGTACTTGTTTAGTTCTGA+AGG - chr2.4:56654418-56654437 MS.gene058238:intron 30.0%
!! AATTTTCCTTCAGGTTTGAA+TGG + chr2.4:56653445-56653464 None:intergenic 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG + chr2.4:56652463-56652482 None:intergenic 30.0%
!! GAATAAGTTGATTCGGTTAA+AGG - chr2.4:56653326-56653345 MS.gene058238:intron 30.0%
!!! ATTTTGGGATTACTTACACA+AGG - chr2.4:56653918-56653937 MS.gene058238:intron 30.0%
!!! CTAAAATGTGGTTTTTTAGG+TGG - chr2.4:56652368-56652387 MS.gene058238:intron 30.0%
AAACCTGTATAAGCAATGGT+TGG - chr2.4:56653681-56653700 MS.gene058238:intron 35.0%
AAAGAAACACTCAAACCTTG+AGG - chr2.4:56652806-56652825 MS.gene058238:intron 35.0%
AAATAGGTTATCTTCGGACA+TGG - chr2.4:56653789-56653808 MS.gene058238:intron 35.0%
AACAAGCTAGTGTAAGTACT+AGG - chr2.4:56654084-56654103 MS.gene058238:intron 35.0%
AACCTGTATAAGCAATGGTT+GGG - chr2.4:56653682-56653701 MS.gene058238:intron 35.0%
ACAAGCACGATTAAAATGCT+GGG - chr2.4:56653353-56653372 MS.gene058238:intron 35.0%
ACAGCACTAAATTTCCTTGT+TGG + chr2.4:56652903-56652922 None:intergenic 35.0%
ACATACCAAACAACCTAAGA+TGG + chr2.4:56653031-56653050 None:intergenic 35.0%
ACATGTTAGAGTTTCGTCTT+AGG - chr2.4:56653637-56653656 MS.gene058238:intron 35.0%
AGAGATGTGAAGTTAAGTCT+TGG - chr2.4:56652180-56652199 MS.gene058238:intron 35.0%
AGTCATACAGTAAGAGATAG+AGG - chr2.4:56653727-56653746 MS.gene058238:intron 35.0%
ATAACAGTTGGACAAAAAGG+TGG - chr2.4:56654747-56654766 MS.gene058238:CDS 35.0%
ATGAGAATCTTGTACTGGAT+TGG - chr2.4:56652927-56652946 MS.gene058238:intron 35.0%
ATTTGGGGGTAAATTACACA+TGG - chr2.4:56653243-56653262 MS.gene058238:intron 35.0%
CATACCAAACAACCTAAGAT+GGG + chr2.4:56653030-56653049 None:intergenic 35.0%
CATGGAGTTGAATATTGGTA+TGG - chr2.4:56652866-56652885 MS.gene058238:intron 35.0%
CATTGAATAACTGACGTATC+TGG + chr2.4:56652345-56652364 None:intergenic 35.0%
CCAAAGTTATGAAAAGGTAG+AGG - chr2.4:56652706-56652725 MS.gene058238:intron 35.0%
GAAGTTCATGAAAGACCATT+AGG - chr2.4:56653944-56653963 MS.gene058238:intron 35.0%
GAGAAAACCTGTATAAGCAA+TGG - chr2.4:56653677-56653696 MS.gene058238:intron 35.0%
GAGTTGAATATTGGTATGGA+TGG - chr2.4:56652870-56652889 MS.gene058238:intron 35.0%
GCTTATAATAGTGACAGGAA+TGG + chr2.4:56652254-56652273 None:intergenic 35.0%
GGAAACACAATATTCCTGTT+TGG - chr2.4:56652201-56652220 MS.gene058238:intron 35.0%
GGTACATCATTACAATGCAA+AGG + chr2.4:56654353-56654372 None:intergenic 35.0%
GGTGCCTACAAAGAAAAAAT+AGG - chr2.4:56653564-56653583 MS.gene058238:intron 35.0%
GGTTGAAATTTACCAGTGTT+TGG - chr2.4:56654052-56654071 MS.gene058238:intron 35.0%
TAGAGATGAGAATCTTGTAC+TGG - chr2.4:56652922-56652941 MS.gene058238:intron 35.0%
TAGTGTAAGTACTAGGAACA+GGG - chr2.4:56654091-56654110 MS.gene058238:intron 35.0%
TCTAAGTAGAGTGGATCAAA+TGG - chr2.4:56653383-56653402 MS.gene058238:intron 35.0%
TTTGAACTTGATGCATGGAA+GGG - chr2.4:56653143-56653162 MS.gene058238:intron 35.0%
! ATGCTGCAATTCATCGTTTT+TGG - chr2.4:56652666-56652685 MS.gene058238:intron 35.0%
! CAAAACCCTTTTCCATTAGA+TGG + chr2.4:56653860-56653879 None:intergenic 35.0%
! CATCTAATGGAAAAGGGTTT+TGG - chr2.4:56653858-56653877 MS.gene058238:intron 35.0%
! CCTCTACCTTTTCATAACTT+TGG + chr2.4:56652709-56652728 None:intergenic 35.0%
! CTGCTATGTTTTCTACAATG+AGG + chr2.4:56653004-56653023 None:intergenic 35.0%
! GAAAACTGGCACAGTTTTTA+GGG + chr2.4:56654185-56654204 None:intergenic 35.0%
! GTTCTTCTGTGTGAAGTTTT+TGG - chr2.4:56651901-56651920 MS.gene058238:intron 35.0%
! TGAAAACTGGCACAGTTTTT+AGG + chr2.4:56654186-56654205 None:intergenic 35.0%
! TGAAAGATCATTAGGCCTTT+TGG - chr2.4:56653277-56653296 MS.gene058238:intron 35.0%
! TGAGCAGTAAATTTTCCTTC+AGG + chr2.4:56653454-56653473 None:intergenic 35.0%
!! AGTGACAGGAATGGATTAAA+TGG + chr2.4:56652245-56652264 None:intergenic 35.0%
!! GTAATGACTAGGTTGGTTAA+AGG - chr2.4:56653996-56654015 MS.gene058238:intron 35.0%
!! TAAGTTGATTCGGTTAAAGG+TGG - chr2.4:56653329-56653348 MS.gene058238:intron 35.0%
!! TCTAAGCAGAGTTGATGAAA+AGG - chr2.4:56652747-56652766 MS.gene058238:intron 35.0%
!! TGTGAAGTTTTTGGAGAATG+AGG - chr2.4:56651910-56651929 MS.gene058238:intron 35.0%
!!! ATTAGGCCTTTTGGCTTAAT+GGG - chr2.4:56653961-56653980 MS.gene058238:intron 35.0%
!!! ATTAGGCCTTTTGGTTTGAT+GGG - chr2.4:56653286-56653305 MS.gene058238:intron 35.0%
!!! ATTCATCGTTTTTGGTACCT+TGG - chr2.4:56652674-56652693 MS.gene058238:intron 35.0%
!!! TTCATCGTTTTTGGTACCTT+GGG - chr2.4:56652675-56652694 MS.gene058238:intron 35.0%
AAGTAGAGTGGATCAAATGG+AGG - chr2.4:56653386-56653405 MS.gene058238:intron 40.0%
AATAGCCCCATCAAACCAAA+AGG + chr2.4:56653295-56653314 None:intergenic 40.0%
AATGGTCCCATTAAGCCAAA+AGG + chr2.4:56653970-56653989 None:intergenic 40.0%
ACAAATACAGCCAAAACAGG+AGG + chr2.4:56654527-56654546 None:intergenic 40.0%
ACCATTCATTTGCGCAACAA+AGG - chr2.4:56654273-56654292 MS.gene058238:intron 40.0%
ACCTTTGTTGCGCAAATGAA+TGG + chr2.4:56654277-56654296 None:intergenic 40.0%
ACGATTAAAATGCTGGGGAT+AGG - chr2.4:56653359-56653378 MS.gene058238:intron 40.0%
AGTTTCGTCTTAGGTGGTTT+GGG - chr2.4:56653646-56653665 MS.gene058238:intron 40.0%
ATATAGCCGATCCCATCTAA+TGG - chr2.4:56653845-56653864 MS.gene058238:intron 40.0%
ATTGGAATGCTATGCGTTTG+AGG - chr2.4:56651826-56651845 MS.gene058238:intron 40.0%
ATTTGCAAAAAAGGTGGGGT+CGG + chr2.4:56653196-56653215 None:intergenic 40.0%
CAAGCACGATTAAAATGCTG+GGG - chr2.4:56653354-56653373 MS.gene058238:intron 40.0%
CACAAGCACGATTAAAATGC+TGG - chr2.4:56653352-56653371 MS.gene058238:intron 40.0%
CATTAAGCCAAAAGGCCTAA+TGG + chr2.4:56653962-56653981 None:intergenic 40.0%
CCTAGTCATTACCAAGTGAA+TGG + chr2.4:56653988-56654007 None:intergenic 40.0%
CGATCCCATCTAATGGAAAA+GGG - chr2.4:56653852-56653871 MS.gene058238:intron 40.0%
CTAGTGAAGCAAATGACGAA+TGG + chr2.4:56654815-56654834 None:intergenic 40.0%
CTAGTGTAAGTACTAGGAAC+AGG - chr2.4:56654090-56654109 MS.gene058238:intron 40.0%
CTTTGAACTTGATGCATGGA+AGG - chr2.4:56653142-56653161 MS.gene058238:intron 40.0%
GCATGGAATTGAATGTTGGA+TGG - chr2.4:56653494-56653513 MS.gene058238:intron 40.0%
TACCACAGTTTAGAGAGACA+AGG + chr2.4:56654561-56654580 None:intergenic 40.0%
TACTGCACAACTATAAGGCT+TGG - chr2.4:56652836-56652855 MS.gene058238:intron 40.0%
TGATGCATGGAAGGGATTTA+TGG - chr2.4:56653151-56653170 MS.gene058238:intron 40.0%
TGCTGCATGGAGTTGAATAT+TGG - chr2.4:56652861-56652880 MS.gene058238:intron 40.0%
TGGATGGTATACAACCAACA+AGG - chr2.4:56652886-56652905 MS.gene058238:intron 40.0%
TGTTAGAGTTTCGTCTTAGG+TGG - chr2.4:56653640-56653659 MS.gene058238:intron 40.0%
TTATCTTCGGACATGGTACA+TGG - chr2.4:56653796-56653815 MS.gene058238:intron 40.0%
TTCCTTGTCTCTCTAAACTG+TGG - chr2.4:56654556-56654575 MS.gene058238:intron 40.0%
! CCTTTTCCATTAGATGGGAT+CGG + chr2.4:56653854-56653873 None:intergenic 40.0%
! GAAGTACCATTCAAACCTGA+AGG - chr2.4:56653436-56653455 MS.gene058238:intron 40.0%
! GTGCAGTAAAGTTTTCCTCA+AGG + chr2.4:56652824-56652843 None:intergenic 40.0%
! TGAAAGACCATTAGGCCTTT+TGG - chr2.4:56653952-56653971 MS.gene058238:intron 40.0%
! TGGTTGATGCAAATAGGTTG+AGG - chr2.4:56653878-56653897 MS.gene058238:intron 40.0%
!! AAGCAGAGTTGATGAAAAGG+AGG - chr2.4:56652750-56652769 MS.gene058238:intron 40.0%
!! CCATTCACTTGGTAATGACT+AGG - chr2.4:56653985-56654004 MS.gene058238:intron 40.0%
!! TCACTTGGTAATGACTAGGT+TGG - chr2.4:56653989-56654008 MS.gene058238:intron 40.0%
!!! CATTAGGCCTTTTGGCTTAA+TGG - chr2.4:56653960-56653979 MS.gene058238:intron 40.0%
!!! CATTAGGCCTTTTGGTTTGA+TGG - chr2.4:56653285-56653304 MS.gene058238:intron 40.0%
!!! GGGTTTTGGTTGATGCAAAT+AGG - chr2.4:56653872-56653891 MS.gene058238:intron 40.0%
!!! TTAGGCCTTTTGGTTTGATG+GGG - chr2.4:56653287-56653306 MS.gene058238:intron 40.0%
AACTCGTGTTCAAGAAGCCA+TGG - chr2.4:56651776-56651795 MS.gene058238:intron 45.0%
AACTTTGGATGAAGGACCCA+AGG + chr2.4:56652694-56652713 None:intergenic 45.0%
ACATAGCAGAGTCCCATCTT+AGG - chr2.4:56653015-56653034 MS.gene058238:intron 45.0%
ACTCTGCTGTTGCATGTCTT+TGG + chr2.4:56651706-56651725 None:intergenic 45.0%
ATAAGGCTTGGAATGCTGCA+TGG - chr2.4:56652848-56652867 MS.gene058238:intron 45.0%
ATCACCTTTATGCTCACGCA+AGG + chr2.4:56654782-56654801 None:intergenic 45.0%
CCGATCCCATCTAATGGAAA+AGG - chr2.4:56653851-56653870 MS.gene058238:intron 45.0%
CTCCCAACCATTGCTTATAC+AGG + chr2.4:56653687-56653706 None:intergenic 45.0%
GAGTTTCGTCTTAGGTGGTT+TGG - chr2.4:56653645-56653664 MS.gene058238:intron 45.0%
GCTTAATGGGACCATTCACT+TGG - chr2.4:56653974-56653993 MS.gene058238:intron 45.0%
GGGATAGGATCTAAGTAGAG+TGG - chr2.4:56653374-56653393 MS.gene058238:intron 45.0%
GTTATTGGGAATTAGAGGGG+CGG - chr2.4:56651939-56651958 MS.gene058238:intron 45.0%
GTTGTAACAGACCCAAACAC+TGG + chr2.4:56654067-56654086 None:intergenic 45.0%
TGGACAAAAAGGTGGCTGAA+AGG - chr2.4:56654755-56654774 MS.gene058238:CDS 45.0%
! AGCCAAAACAGGAGGTACAA+TGG + chr2.4:56654519-56654538 None:intergenic 45.0%
! CTCCATTGTACCTCCTGTTT+TGG - chr2.4:56654514-56654533 MS.gene058238:intron 45.0%
! GAACACGAGTTGAATCAAGC+TGG + chr2.4:56651767-56651786 None:intergenic 45.0%
! GAGTCCCATCTTAGGTTGTT+TGG - chr2.4:56653023-56653042 MS.gene058238:intron 45.0%
!! AACTGGCACAGTTTTTAGGG+TGG + chr2.4:56654182-56654201 None:intergenic 45.0%
!! GGAGTGTTGAGAAGATGGAA+AGG - chr2.4:56653703-56653722 MS.gene058238:intron 45.0%
!!! ACTGGCACAGTTTTTAGGGT+GGG + chr2.4:56654181-56654200 None:intergenic 45.0%
!!! AGGGGCGGTGTAGTTTTTTT+GGG - chr2.4:56651954-56651973 MS.gene058238:intron 45.0%
!!! CGGTGTAGTTTTTTTGGGGA+GGG - chr2.4:56651959-56651978 MS.gene058238:intron 45.0%
!!! GGTGTAGTTTTTTTGGGGAG+GGG - chr2.4:56651960-56651979 MS.gene058238:intron 45.0%
!!! GTGTAGTTTTTTTGGGGAGG+GGG - chr2.4:56651961-56651980 MS.gene058238:intron 45.0%
AGAAGCAGCAATGGAAGCCA+TGG + chr2.4:56651796-56651815 None:intergenic 50.0%
AGCTTCAGCAGAAGCAGCAA+TGG + chr2.4:56651805-56651824 None:intergenic 50.0%
AGGACCTTGCGTGAGCATAA+AGG - chr2.4:56654775-56654794 MS.gene058238:CDS 50.0%
CTGCTTCTGCTGAAGCTGAT+TGG - chr2.4:56651808-56651827 MS.gene058238:intron 50.0%
TTCGGACATGGTACATGGCA+GGG - chr2.4:56653801-56653820 MS.gene058238:intron 50.0%
! TTAGGTGGTTTGGGCATGTG+CGG - chr2.4:56653655-56653674 MS.gene058238:intron 50.0%
!! GGTTGGGAGTGTTGAGAAGA+TGG - chr2.4:56653698-56653717 MS.gene058238:intron 50.0%
!!! CTGGCACAGTTTTTAGGGTG+GGG + chr2.4:56654180-56654199 None:intergenic 50.0%
!!! GAGGGGCGGTGTAGTTTTTT+TGG - chr2.4:56651953-56651972 MS.gene058238:intron 50.0%
!!! GCGGTGTAGTTTTTTTGGGG+AGG - chr2.4:56651958-56651977 MS.gene058238:intron 50.0%
!!! GGGGCGGTGTAGTTTTTTTG+GGG - chr2.4:56651955-56651974 MS.gene058238:intron 50.0%
!!! TTTTTTTGGGGAGGGGGTGT+TGG - chr2.4:56651967-56651986 MS.gene058238:intron 50.0%
AGACGAAGGAGTGGAGATGG+TGG - chr2.4:56651674-56651693 MS.gene058238:CDS 55.0%
CAAGCTGGCGATCTTCAACG+CGG + chr2.4:56651752-56651771 None:intergenic 55.0%
CTTCGGACATGGTACATGGC+AGG - chr2.4:56653800-56653819 MS.gene058238:intron 55.0%
TGGAGACGAAGGAGTGGAGA+TGG - chr2.4:56651671-56651690 MS.gene058238:CDS 55.0%
! TGGTACATGGCAGGGCACTA+TGG - chr2.4:56653809-56653828 MS.gene058238:intron 55.0%
GGAGGGTGGAGACGAAGGAG+TGG - chr2.4:56651665-56651684 MS.gene058238:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 56651663 56654834 56651663 ID=MS.gene058238
chr2.4 mRNA 56651663 56654834 56651663 ID=MS.gene058238.t1;Parent=MS.gene058238
chr2.4 exon 56654650 56654834 56654650 ID=MS.gene058238.t1.exon1;Parent=MS.gene058238.t1
chr2.4 CDS 56654650 56654834 56654650 ID=cds.MS.gene058238.t1;Parent=MS.gene058238.t1
chr2.4 exon 56651829 56651895 56651829 ID=MS.gene058238.t1.exon2;Parent=MS.gene058238.t1
chr2.4 CDS 56651829 56651895 56651829 ID=cds.MS.gene058238.t1;Parent=MS.gene058238.t1
chr2.4 exon 56651663 56651743 56651663 ID=MS.gene058238.t1.exon3;Parent=MS.gene058238.t1
chr2.4 CDS 56651663 56651743 56651663 ID=cds.MS.gene058238.t1;Parent=MS.gene058238.t1
Gene Sequence

>MS.gene058238

ATGGAGGGTGGAGACGAAGGAGTGGAGATGGTGGTTGATTCCAAAGACATGCAACAGCAGAGTAAAGCTTTCGATAAACTCACTGACCGCGTTGAAGATCGCCAGCTTGATTCAACTCGTGTTCAAGAAGCCATGGCTTCCATTGCTGCTTCTGCTGAAGCTGATTGGAATGCTATGCGTTTGAGGTAAACAAAAATTAACATTGATTCAGTTTTTCTTTGTGGGTTTTTGATGTATTGTTCTTCTGTGTGAAGTTTTTGGAGAATGAGGTTTTTAGTTATTGGGAATTAGAGGGGCGGTGTAGTTTTTTTGGGGAGGGGGTGTTGGATGAACTTTTATAAGTTTGAAATAAACGTTTAATTTCGTAAAGTTTAATTTTTTCTGTATGGGTAATTTGTGTTTTCAGCTATTGTATTAAGTTTTTTTAATGACTCTATAAACAAGTGGATCTTAATTAAATTGATTATTCATATAGATTTTAAGTTAGATGGTTGGGAGAAAAATTAAGTGAAAGTGTAGAGATGTGAAGTTAAGTCTTGGAAACACAATATTCCTGTTTGGATAAACAACTTAATCAAACCATTTAATCCATTCCTGTCACTATTATAAGCAAAAAATCACTTTTTAGATTCATTGATTAACATCAATATCTGGTCTATATTTTGGTATATAATATAGACCAGATACGTCAGTTATTCAATGAACCTAAAATGTGGTTTTTTAGGTGGGAGTAATGTGTTTATGTATAAGCTATTTCTATAACAAATGATAAAATTAAGTCAAACTGTGTTCATGAGCCAAGAGCTTATGAAAATAAGCTTAAAACATATTATGGACATGTCATAAGTTTTTTTCATAAGCTCTTTCAAACAGTGTTATGTCATGACTCATACGTGTTTATGTCAGTAGATAAACTCAAATAAGCCAATTCAAATAGAACCTAAGTACAATAAGTATATGGAATGCAATTCTAACTTAATGATGGAAATTATAGGAGTATACAATGCTGCAATTCATCGTTTTTGGTACCTTGGGTCCTTCATCCAAAGTTATGAAAAGGTAGAGGAAGATGTAAACAATAGGATCTAAGCAGAGTTGATGAAAAGGAGGATATGTCATGTGTAATACTAATAAGCAACTTAAAAAGAAACACTCAAACCTTGAGGAAAACTTTACTGCACAACTATAAGGCTTGGAATGCTGCATGGAGTTGAATATTGGTATGGATGGTATACAACCAACAAGGAAATTTAGTGCTGTAGAGATGAGAATCTTGTACTGGATTGGTGTCTACAAAGAAAAATAGGAATAGAAAGTTCAATGATTAGAAAGAGTAGCCCTCATTGTAGAAAACATAGCAGAGTCCCATCTTAGGTTGTTTGGTATGTGAGTAGAAAACCTACATAAGTAGTAAGAAATAGAGGGAGTCCAAGAAAAACTATAGATCAAACTATGGTGATTTAGAGGTAAATAAGTTATCTTTGAACTTGATGCATGGAAGGGATTTATGGTATCAGTTAATTTATGTAGCCGACCCCACCTTTTTTGCAAATAGATTGAGATAAATTGCTAATTTTTGAATTTGGGGGTAAATTACACATGGAATAAAGATGATGAAAGATCATTAGGCCTTTTGGTTTGATGGGGCTATTCACTGAGTAATGAATAAGTTGATTCGGTTAAAGGTGGCACAAGCACGATTAAAATGCTGGGGATAGGATCTAAGTAGAGTGGATCAAATGGAGGAATGTTTCATGTGTAATAAGAAACTTAGAAGTACCATTCAAACCTGAAGGAAAATTTACTGCTCAGCTACAATACTTGTAATATTGCATGGAATTGAATGTTGGATGGCAACAAGAAAATTTAGTGCTGTAAAGATGCGAATCTTATATTGGATTGGTGCCTACAAAGAAAAAATAGGAATAGAAGTTCAATGATTAAAGAGAGATAGGGTAGCTCCTATTGTAGAAAACATGTTAGAGTTTCGTCTTAGGTGGTTTGGGCATGTGCGGAGAAAACCTGTATAAGCAATGGTTGGGAGTGTTGAGAAGATGGAAAGGCAGTCATACAGTAAGAGATAGAGGAAGTCAATATTGTAGGTCAATCCATAGAGATTTCGAAGTAAATAGGTTATCTTCGGACATGGTACATGGCAGGGCACTATGGCATCTTTTAATTTATATAGCCGATCCCATCTAATGGAAAAGGGTTTTGGTTGATGCAAATAGGTTGAGGTAAATTGTTAATTTTGAATTTTGGGATTACTTACACAAGGAATGAAGTTCATGAAAGACCATTAGGCCTTTTGGCTTAATGGGACCATTCACTTGGTAATGACTAGGTTGGTTAAAGGCGACGCCATTAAAATGTTGAACATATGAAGCAGGGTTGAAATTTACCAGTGTTTGGGTCTGTTACAACAAGCTAGTGTAAGTACTAGGAACAGGGAACCTCGAGACAAAGTTCTTAAATTTTAATGTTAGGTTTGGTATCAGTATCACTTTCTCTCTTCCCCACCCTAAAAACTGTGCCAGTTTTCAACTTGAGTATTTACTCTGAAATTTCTAAAAGCATAGGAGGTGCCTTTGTTCTTTTTTTGATATTTTCACCATTCATTTGCGCAACAAAGGTAGTCAATTGTAGCTGTTTACACTGTTTAATGTTTAGCATCTAAGTTTTGCTTCCCTTTGCATTGTAATGATGTACCTTTTTATGTTCTGGTATTATATGCTGTATTACTAGTGGAAATATAAAGTACTTGTTTAGTTCTGAAGGTTTAATTTTAACATGAGTGAAACATGATTATATATTTCAAAAAGTCCCCTGAAGTTATGTATAGAAATCAAAGCTCCATTGTACCTCCTGTTTTGGCTGTATTTGTAAATTTGTTTTCCTTGTCTCTCTAAACTGTGGTATGTATTTTGATTGAATCATAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCAGATGTTGATATAATTGCAAACGAACTAGAGGTAACTTCTTCAACAGATTGTACCGAAATCTATCTAGAAATTTACTTACATTCCAATCAGTTAACATACTTTTCTTATATAACAGTTGGACAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGTCATTTGCTTCACTAG

Protein sequence

>MS.gene058238.t1

MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH