Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66277.t1 | PNY17838.1 | 49.1 | 222 | 113 | 0 | 1 | 222 | 1 | 222 | 8.30E-55 | 223.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66277.t1 | A0A2K3PRC0 | 49.1 | 222 | 113 | 0 | 1 | 222 | 1 | 222 | 6.0e-55 | 223.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene66277 | 0.810635 | 1.05E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene66277 | 0.81197 | 5.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66277.t1 | MTR_7g039210 | 27.928 | 222 | 130 | 4 | 9 | 200 | 9 | 230 | 1.47e-28 | 108 |
| MS.gene66277.t1 | MTR_1g054495 | 25.676 | 222 | 164 | 1 | 1 | 222 | 1 | 221 | 8.39e-27 | 103 |
| MS.gene66277.t1 | MTR_1g041870 | 28.571 | 196 | 112 | 3 | 28 | 223 | 7 | 174 | 9.00e-27 | 102 |
| MS.gene66277.t1 | MTR_1g054485 | 29.412 | 187 | 132 | 0 | 1 | 187 | 1 | 187 | 1.10e-26 | 102 |
| MS.gene66277.t1 | MTR_4g085790 | 29.646 | 226 | 150 | 3 | 1 | 222 | 1 | 221 | 7.64e-26 | 100 |
| MS.gene66277.t1 | MTR_7g025150 | 30.702 | 228 | 145 | 5 | 1 | 222 | 1 | 221 | 2.53e-24 | 96.7 |
| MS.gene66277.t1 | MTR_0014s0220 | 27.189 | 217 | 141 | 2 | 8 | 224 | 626 | 825 | 1.11e-21 | 93.6 |
| MS.gene66277.t1 | MTR_4g123470 | 27.053 | 207 | 151 | 0 | 15 | 221 | 18 | 224 | 2.82e-21 | 88.6 |
| MS.gene66277.t1 | MTR_5g074790 | 29.358 | 109 | 77 | 0 | 14 | 122 | 161 | 269 | 1.53e-11 | 62.8 |
| MS.gene66277.t1 | MTR_4g053550 | 36.111 | 72 | 46 | 0 | 24 | 95 | 47 | 118 | 1.84e-11 | 60.1 |
| MS.gene66277.t1 | MTR_4g069750 | 35.052 | 97 | 63 | 0 | 1 | 97 | 1 | 97 | 2.07e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAACCCTCTATCTTTC+TGG | 0.158834 | 6.4:+64020775 | MS.gene66277:CDS |
| CCGATTAATCAGCAGGATTT+TGG | 0.187815 | 6.4:+64020866 | MS.gene66277:intron |
| TTTCACCTATGGAGAATTAT+TGG | 0.194379 | 6.4:+64020722 | None:intergenic |
| AAAACATGAACCTTCTTCTT+AGG | 0.199782 | 6.4:-64021536 | None:intergenic |
| GAGGTTGTTCTCTTCTACTA+TGG | 0.301858 | 6.4:+64021064 | MS.gene66277:CDS |
| TACTGTTGCTGCCTCTCATT+TGG | 0.302835 | 6.4:+64021210 | MS.gene66277:CDS |
| TACTATGGTAACGATCTCTT+TGG | 0.314615 | 6.4:+64021079 | MS.gene66277:CDS |
| AAGGAGTTCTGTAAGGAAAT+TGG | 0.327796 | 6.4:+64021467 | MS.gene66277:CDS |
| CACTCCTATTGCCGTCTTCA+TGG | 0.357892 | 6.4:-64021438 | None:intergenic |
| CAACTCTCATTCCACGACTA+TGG | 0.397696 | 6.4:-64021150 | None:intergenic |
| AGAGAACAACCTCCTGGTTT+CGG | 0.410476 | 6.4:-64021054 | None:intergenic |
| TTCCTTGATGAACAACCATA+TGG | 0.430156 | 6.4:+64020748 | MS.gene66277:CDS |
| CAACAGTAAAAGCATTCAAC+TGG | 0.433820 | 6.4:-64021195 | None:intergenic |
| TAGTAAGAAGCTCGAAAATC+CGG | 0.435576 | 6.4:+64021111 | MS.gene66277:CDS |
| TCAGTAAGAAGTGGATGAAC+AGG | 0.440343 | 6.4:-64020995 | None:intergenic |
| CCCTCCATGAAGACGGCAAT+AGG | 0.440838 | 6.4:+64021434 | MS.gene66277:CDS |
| ACTATGGTAACGATCTCTTT+GGG | 0.443044 | 6.4:+64021080 | MS.gene66277:CDS |
| TTACCTTGCCAGAAAGATAG+AGG | 0.455528 | 6.4:-64020783 | None:intergenic |
| GTTCATCCACTTCTTACTGA+TGG | 0.459428 | 6.4:+64020998 | MS.gene66277:CDS |
| GAGAATCCATAGGGAGTTTG+AGG | 0.460901 | 6.4:+64021322 | MS.gene66277:intron |
| CTCCATATGGTTGTTCATCA+AGG | 0.462097 | 6.4:-64020750 | None:intergenic |
| CATAGTCCTCAAACTCCCTA+TGG | 0.468898 | 6.4:-64021328 | None:intergenic |
| GAGGACTATGTTAGAGCTTG+TGG | 0.470662 | 6.4:+64021341 | MS.gene66277:CDS |
| ATCCACTTCTTACTGATGGT+TGG | 0.473720 | 6.4:+64021002 | MS.gene66277:CDS |
| AATTCTTAATCCTAAGAAGA+AGG | 0.474339 | 6.4:+64021526 | MS.gene66277:CDS |
| TTGTTGTCTTCAAAGAAAAG+TGG | 0.498344 | 6.4:-64020899 | None:intergenic |
| CCTATTGCCGTCTTCATGGA+GGG | 0.526335 | 6.4:-64021434 | None:intergenic |
| GGGGTGGAAGGAGTTCTGTA+AGG | 0.538186 | 6.4:+64021460 | MS.gene66277:CDS |
| GGCAATAGGAGTGGGGTGGA+AGG | 0.540633 | 6.4:+64021448 | MS.gene66277:CDS |
| ACTTCTTACTGATGGTTGGA+AGG | 0.546167 | 6.4:+64021006 | MS.gene66277:CDS |
| ATGAAGACGGCAATAGGAGT+GGG | 0.547210 | 6.4:+64021440 | MS.gene66277:CDS |
| ATTCCACGACTATGGTAAGT+AGG | 0.548596 | 6.4:-64021142 | None:intergenic |
| TGATGGTTGGAAGGATATGC+AGG | 0.555282 | 6.4:+64021015 | MS.gene66277:CDS |
| TTCCAACCATCAGTAAGAAG+TGG | 0.557115 | 6.4:-64021004 | None:intergenic |
| CATAGTCGTGGAATGAGAGT+TGG | 0.563775 | 6.4:+64021151 | MS.gene66277:CDS |
| TTGACTCTGTGTTGCGACAA+TGG | 0.565518 | 6.4:+64021374 | MS.gene66277:CDS |
| TCCTATTGCCGTCTTCATGG+AGG | 0.571158 | 6.4:-64021435 | None:intergenic |
| TGGTGGTATTATACATTGTG+AGG | 0.572057 | 6.4:+64022568 | MS.gene66277:CDS |
| AACCCTCTATCTTTCTGGCA+AGG | 0.572362 | 6.4:+64020780 | MS.gene66277:CDS |
| TGGTAAGTAGGAATCTGATC+CGG | 0.572710 | 6.4:-64021130 | None:intergenic |
| AGGGTTGTAAAACCTCCATA+TGG | 0.588874 | 6.4:-64020763 | None:intergenic |
| AGTAGAAGAGAACAACCTCC+TGG | 0.595482 | 6.4:-64021060 | None:intergenic |
| CCTCAAGGTTACTTTCAACA+AGG | 0.595975 | 6.4:+64020970 | MS.gene66277:CDS |
| CTTGATGAACAACCATATGG+AGG | 0.601812 | 6.4:+64020751 | MS.gene66277:CDS |
| AAATTCCAATAATTCTCCAT+AGG | 0.603347 | 6.4:-64020727 | None:intergenic |
| CATGAAGACGGCAATAGGAG+TGG | 0.603758 | 6.4:+64021439 | MS.gene66277:CDS |
| GGATGAACCCTCCATGAAGA+CGG | 0.619923 | 6.4:+64021427 | MS.gene66277:CDS |
| ATTCCTACTTACCATAGTCG+TGG | 0.621922 | 6.4:+64021139 | MS.gene66277:CDS |
| AAACTAACTAACCAAATGAG+AGG | 0.627212 | 6.4:-64021221 | None:intergenic |
| TACCTTGCCAGAAAGATAGA+GGG | 0.634498 | 6.4:-64020782 | None:intergenic |
| AGACGGCAATAGGAGTGGGG+TGG | 0.655910 | 6.4:+64021444 | MS.gene66277:CDS |
| CCTTGTTGAAAGTAACCTTG+AGG | 0.679764 | 6.4:-64020970 | None:intergenic |
| TGAAGACGGCAATAGGAGTG+GGG | 0.695742 | 6.4:+64021441 | MS.gene66277:CDS |
| CTACGCGGATAAGAGCCTCA+AGG | 0.697712 | 6.4:+64020955 | MS.gene66277:CDS |
| CAACTGGAGATAGAAATGCA+TGG | 0.726975 | 6.4:-64021179 | None:intergenic |
| ATGGACGATAATGAACTACG+CGG | 0.807507 | 6.4:+64020940 | MS.gene66277:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAGGTAAATTAATAA+AGG | + | chr6.4:64022017-64022036 | MS.gene66277:intron | 10.0% |
| !! | AATAAATTAAAGGTAAATAA+AGG | + | chr6.4:64022003-64022022 | MS.gene66277:intron | 10.0% |
| !! | ATTAAAGGTAAATAAATTAA+AGG | + | chr6.4:64021993-64022012 | MS.gene66277:intron | 10.0% |
| !!! | TTAAATATTTACTGTATTTT+AGG | + | chr6.4:64022060-64022079 | MS.gene66277:intron | 10.0% |
| !!! | TTTTAATGTTTTTTTTTTGT+AGG | + | chr6.4:64022544-64022563 | MS.gene66277:intron | 10.0% |
| !! | AAACATTAAAAACAATATAG+TGG | - | chr6.4:64022535-64022554 | None:intergenic | 15.0% |
| !! | AAAGGTAAATGTTAAATTAA+AGG | + | chr6.4:64021978-64021997 | MS.gene66277:intron | 15.0% |
| !! | GCTTAACTTTATTAAATTAA+AGG | + | chr6.4:64021960-64021979 | MS.gene66277:intron | 15.0% |
| !! | TCAAAAGAATATTGAAATAT+TGG | + | chr6.4:64021924-64021943 | MS.gene66277:intron | 15.0% |
| !! | TTGAAAAAAAAACCAATAAT+AGG | - | chr6.4:64021890-64021909 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTGCCTATTAT+TGG | + | chr6.4:64021875-64021894 | MS.gene66277:intron | 15.0% |
| !! | AAAAAACAAATCACAAAACA+TGG | - | chr6.4:64020837-64020856 | None:intergenic | 20.0% |
| !! | AATAACACCATAAAAGTTAT+TGG | - | chr6.4:64021695-64021714 | None:intergenic | 20.0% |
| !! | AATACATAGAAATTTCACTA+TGG | - | chr6.4:64022220-64022239 | None:intergenic | 20.0% |
| !! | ATAACACCATAAAAGTTATT+GGG | - | chr6.4:64021694-64021713 | None:intergenic | 20.0% |
| !! | ATTGATCGCAATAATTTATA+TGG | - | chr6.4:64022132-64022151 | None:intergenic | 20.0% |
| !! | ATTGTTCATATTGAAGAATT+GGG | + | chr6.4:64022375-64022394 | MS.gene66277:intron | 20.0% |
| !! | TAAAGTTAAGCAATTATCAA+TGG | - | chr6.4:64021951-64021970 | None:intergenic | 20.0% |
| !! | TATTGTTCATATTGAAGAAT+TGG | + | chr6.4:64022374-64022393 | MS.gene66277:intron | 20.0% |
| !! | TTGATCGCAATAATTTATAT+GGG | - | chr6.4:64022131-64022150 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTTTTGTAGGT+TGG | + | chr6.4:64022548-64022567 | MS.gene66277:intron | 20.0% |
| !!! | CTTTTGTATTTTTCCATTAT+TGG | + | chr6.4:64022422-64022441 | MS.gene66277:intron | 20.0% |
| !!! | TATTTCAATATTCTTTTGAG+CGG | - | chr6.4:64021923-64021942 | None:intergenic | 20.0% |
| ! | AAAAATACAAAAGACAACCA+GGG | - | chr6.4:64022415-64022434 | None:intergenic | 25.0% |
| ! | AATTCTTAATCCTAAGAAGA+AGG | + | chr6.4:64021526-64021545 | MS.gene66277:CDS | 25.0% |
| ! | ACATAAAATAAGGAATCTCT+TGG | + | chr6.4:64022481-64022500 | MS.gene66277:intron | 25.0% |
| ! | CAAAAAATTCAAAATGTCCA+AGG | + | chr6.4:64022302-64022321 | MS.gene66277:intron | 25.0% |
| ! | TAACACCATAAAAGTTATTG+GGG | - | chr6.4:64021693-64021712 | None:intergenic | 25.0% |
| ! | TATGGAAGAGACATAAAATA+AGG | + | chr6.4:64022471-64022490 | MS.gene66277:intron | 25.0% |
| ! | TGCAAGATCTCATATAATTT+CGG | + | chr6.4:64021851-64021870 | MS.gene66277:intron | 25.0% |
| !! | CTTGGACATTTTGAATTTTT+TGG | - | chr6.4:64022304-64022323 | None:intergenic | 25.0% |
| !! | TTATTGCGATCAATTTTCAA+CGG | + | chr6.4:64022138-64022157 | MS.gene66277:intron | 25.0% |
| !!! | TATTTACTGTATTTTAGGTC+TGG | + | chr6.4:64022065-64022084 | MS.gene66277:intron | 25.0% |
| !!! | TATTTTTCCATTATTGGCTT+TGG | + | chr6.4:64022428-64022447 | MS.gene66277:intron | 25.0% |
| !!! | TTATTTTATGTCTCTTCCAT+AGG | - | chr6.4:64022472-64022491 | None:intergenic | 25.0% |
| AAAACATGAACCTTCTTCTT+AGG | - | chr6.4:64021539-64021558 | None:intergenic | 30.0% | |
| AAACTAACTAACCAAATGAG+AGG | - | chr6.4:64021224-64021243 | None:intergenic | 30.0% | |
| GAAAAATACAAAAGACAACC+AGG | - | chr6.4:64022416-64022435 | None:intergenic | 30.0% | |
| GTCATGAACAGTGTAATTAA+CGG | + | chr6.4:64022160-64022179 | MS.gene66277:intron | 30.0% | |
| TTATTGGGGAACACATAAAA+GGG | - | chr6.4:64021679-64021698 | None:intergenic | 30.0% | |
| TTGTTGTCTTCAAAGAAAAG+TGG | - | chr6.4:64020902-64020921 | None:intergenic | 30.0% | |
| ! | TTTTGTTCAGAGAATCCATA+GGG | + | chr6.4:64021313-64021332 | MS.gene66277:intron | 30.0% |
| !! | ACTTTTCTTTGAAGACAACA+AGG | + | chr6.4:64020901-64020920 | MS.gene66277:CDS | 30.0% |
| !! | GAAGAAGGTTCATGTTTTTA+AGG | + | chr6.4:64021541-64021560 | MS.gene66277:CDS | 30.0% |
| !! | GGATATTAGTTGATAGTTGA+TGG | - | chr6.4:64022283-64022302 | None:intergenic | 30.0% |
| !! | TCATTATCGTCCATTTTTCA+GGG | - | chr6.4:64020934-64020953 | None:intergenic | 30.0% |
| !! | TTCATTATCGTCCATTTTTC+AGG | - | chr6.4:64020935-64020954 | None:intergenic | 30.0% |
| !!! | AGGTTCATGTTTTTAAGGTT+AGG | + | chr6.4:64021546-64021565 | MS.gene66277:intron | 30.0% |
| !!! | ATGTTTGTTTTAATCTGCTC+TGG | + | chr6.4:64021808-64021827 | MS.gene66277:intron | 30.0% |
| !!! | CTCTTCTCACGTTATTTTAA+AGG | + | chr6.4:64022253-64022272 | MS.gene66277:intron | 30.0% |
| !!! | CTGTAAGGAAATTGGTTTTA+AGG | + | chr6.4:64021475-64021494 | MS.gene66277:CDS | 30.0% |
| !!! | GTTTTTTTTTTGTAGGTTGG+TGG | + | chr6.4:64022551-64022570 | MS.gene66277:intron | 30.0% |
| AAGGAGTTCTGTAAGGAAAT+TGG | + | chr6.4:64021467-64021486 | MS.gene66277:CDS | 35.0% | |
| ACAACATAAAACTCCATGCA+AGG | - | chr6.4:64021630-64021649 | None:intergenic | 35.0% | |
| GGGTACAAACACAATAACAT+AGG | - | chr6.4:64021659-64021678 | None:intergenic | 35.0% | |
| GTTATTGGGGAACACATAAA+AGG | - | chr6.4:64021680-64021699 | None:intergenic | 35.0% | |
| TAGTAAGAAGCTCGAAAATC+CGG | + | chr6.4:64021111-64021130 | MS.gene66277:CDS | 35.0% | |
| TGGTGGTATTATACATTGTG+AGG | + | chr6.4:64022568-64022587 | MS.gene66277:CDS | 35.0% | |
| TTCCTTGATGAACAACCATA+TGG | + | chr6.4:64020748-64020767 | MS.gene66277:CDS | 35.0% | |
| TTTACAACCCTCTATCTTTC+TGG | + | chr6.4:64020775-64020794 | MS.gene66277:CDS | 35.0% | |
| ! | AAGGATATGCAGGATGTTTT+TGG | + | chr6.4:64021025-64021044 | MS.gene66277:CDS | 35.0% |
| ! | ACTATGGTAACGATCTCTTT+GGG | + | chr6.4:64021080-64021099 | MS.gene66277:CDS | 35.0% |
| ! | CCAAAATCCTGCTGATTAAT+CGG | - | chr6.4:64020869-64020888 | None:intergenic | 35.0% |
| ! | GAAAACCTGAACACTCTTTT+TGG | - | chr6.4:64021402-64021421 | None:intergenic | 35.0% |
| ! | GTGTTCCCCAATAACTTTTA+TGG | + | chr6.4:64021685-64021704 | MS.gene66277:intron | 35.0% |
| ! | TACTATGGTAACGATCTCTT+TGG | + | chr6.4:64021079-64021098 | MS.gene66277:CDS | 35.0% |
| ! | TTTTCTCCTGTGTATCACTT+TGG | + | chr6.4:64022326-64022345 | MS.gene66277:intron | 35.0% |
| !! | CAACAGTAAAAGCATTCAAC+TGG | - | chr6.4:64021198-64021217 | None:intergenic | 35.0% |
| !! | GCATGGAGTTTTATGTTGTT+TGG | + | chr6.4:64021631-64021650 | MS.gene66277:intron | 35.0% |
| !! | GTTTTGTTCAGAGAATCCAT+AGG | + | chr6.4:64021312-64021331 | MS.gene66277:intron | 35.0% |
| AAACGACCAAAGTGATACAC+AGG | - | chr6.4:64022335-64022354 | None:intergenic | 40.0% | |
| ACTTCTTACTGATGGTTGGA+AGG | + | chr6.4:64021006-64021025 | MS.gene66277:CDS | 40.0% | |
| AGGATGATCTCCCTGAAAAA+TGG | + | chr6.4:64020921-64020940 | MS.gene66277:CDS | 40.0% | |
| AGGGTTGTAAAACCTCCATA+TGG | - | chr6.4:64020766-64020785 | None:intergenic | 40.0% | |
| ATCCACTTCTTACTGATGGT+TGG | + | chr6.4:64021002-64021021 | MS.gene66277:CDS | 40.0% | |
| ATGATATCCAGAACTGCAAC+GGG | - | chr6.4:64021741-64021760 | None:intergenic | 40.0% | |
| ATGGACGATAATGAACTACG+CGG | + | chr6.4:64020940-64020959 | MS.gene66277:CDS | 40.0% | |
| ATTCCACGACTATGGTAAGT+AGG | - | chr6.4:64021145-64021164 | None:intergenic | 40.0% | |
| ATTCCTACTTACCATAGTCG+TGG | + | chr6.4:64021139-64021158 | MS.gene66277:CDS | 40.0% | |
| ATTTGTAAGCTGCAGTGTGT+TGG | + | chr6.4:64021712-64021731 | MS.gene66277:intron | 40.0% | |
| CAACTGGAGATAGAAATGCA+TGG | - | chr6.4:64021182-64021201 | None:intergenic | 40.0% | |
| CATGATATCCAGAACTGCAA+CGG | - | chr6.4:64021742-64021761 | None:intergenic | 40.0% | |
| CCTTGTTGAAAGTAACCTTG+AGG | - | chr6.4:64020973-64020992 | None:intergenic | 40.0% | |
| CTCCATATGGTTGTTCATCA+AGG | - | chr6.4:64020753-64020772 | None:intergenic | 40.0% | |
| CTTGATGAACAACCATATGG+AGG | + | chr6.4:64020751-64020770 | MS.gene66277:CDS | 40.0% | |
| GAGGTTGTTCTCTTCTACTA+TGG | + | chr6.4:64021064-64021083 | MS.gene66277:CDS | 40.0% | |
| GATACACAGGAGAAAAACCT+TGG | - | chr6.4:64022322-64022341 | None:intergenic | 40.0% | |
| GTGTCAGAACAGGACATTAA+CGG | + | chr6.4:64022182-64022201 | MS.gene66277:intron | 40.0% | |
| GTTCATCCACTTCTTACTGA+TGG | + | chr6.4:64020998-64021017 | MS.gene66277:CDS | 40.0% | |
| TACCTTGCCAGAAAGATAGA+GGG | - | chr6.4:64020785-64020804 | None:intergenic | 40.0% | |
| TCAGTAAGAAGTGGATGAAC+AGG | - | chr6.4:64020998-64021017 | None:intergenic | 40.0% | |
| TGGTAAGTAGGAATCTGATC+CGG | - | chr6.4:64021133-64021152 | None:intergenic | 40.0% | |
| TGGTGTGTCACAATTTCCTA+TGG | + | chr6.4:64022453-64022472 | MS.gene66277:intron | 40.0% | |
| TTACCTTGCCAGAAAGATAG+AGG | - | chr6.4:64020786-64020805 | None:intergenic | 40.0% | |
| TTCCAACCATCAGTAAGAAG+TGG | - | chr6.4:64021007-64021026 | None:intergenic | 40.0% | |
| TTTCTGACCGATTAATCAGC+AGG | + | chr6.4:64020859-64020878 | MS.gene66277:intron | 40.0% | |
| ! | AATCTGCTCTGGTTCATGAA+TGG | + | chr6.4:64021819-64021838 | MS.gene66277:intron | 40.0% |
| ! | CCGATTAATCAGCAGGATTT+TGG | + | chr6.4:64020866-64020885 | MS.gene66277:intron | 40.0% |
| ! | CCTCAAGGTTACTTTCAACA+AGG | + | chr6.4:64020970-64020989 | MS.gene66277:CDS | 40.0% |
| ! | GAATCTCTTGGCTTTCAACT+GGG | + | chr6.4:64022493-64022512 | MS.gene66277:intron | 40.0% |
| ! | GTAATTAACGGTGTCAGAAC+AGG | + | chr6.4:64022172-64022191 | MS.gene66277:intron | 40.0% |
| !! | GAGTGTTCAGGTTTTCTATG+TGG | + | chr6.4:64021406-64021425 | MS.gene66277:CDS | 40.0% |
| !! | GTATTTTAGGTCTGGCACTT+TGG | + | chr6.4:64022073-64022092 | MS.gene66277:intron | 40.0% |
| !! | TAATCAGCAGGATTTTGGAG+AGG | + | chr6.4:64020871-64020890 | MS.gene66277:intron | 40.0% |
| !! | TTCCATTATTGGCTTTGGCT+TGG | + | chr6.4:64022433-64022452 | MS.gene66277:intron | 40.0% |
| !!! | TTTTGGTTTTCACCGAAACC+AGG | + | chr6.4:64021042-64021061 | MS.gene66277:CDS | 40.0% |
| AGAGAACAACCTCCTGGTTT+CGG | - | chr6.4:64021057-64021076 | None:intergenic | 45.0% | |
| AGCCAGATAAGTCGTCTTCT+AGG | - | chr6.4:64021597-64021616 | None:intergenic | 45.0% | |
| AGTAGAAGAGAACAACCTCC+TGG | - | chr6.4:64021063-64021082 | None:intergenic | 45.0% | |
| ATGAAGACGGCAATAGGAGT+GGG | + | chr6.4:64021440-64021459 | MS.gene66277:CDS | 45.0% | |
| CAACTCTCATTCCACGACTA+TGG | - | chr6.4:64021153-64021172 | None:intergenic | 45.0% | |
| CACCAAGCCAAAGCCAATAA+TGG | - | chr6.4:64022438-64022457 | None:intergenic | 45.0% | |
| CATAGTCCTCAAACTCCCTA+TGG | - | chr6.4:64021331-64021350 | None:intergenic | 45.0% | |
| CATAGTCGTGGAATGAGAGT+TGG | + | chr6.4:64021151-64021170 | MS.gene66277:CDS | 45.0% | |
| CTCCTAGAAGACGACTTATC+TGG | + | chr6.4:64021592-64021611 | MS.gene66277:intron | 45.0% | |
| GAGAATCCATAGGGAGTTTG+AGG | + | chr6.4:64021322-64021341 | MS.gene66277:intron | 45.0% | |
| GAGGACTATGTTAGAGCTTG+TGG | + | chr6.4:64021341-64021360 | MS.gene66277:CDS | 45.0% | |
| TACTGTTGCTGCCTCTCATT+TGG | + | chr6.4:64021210-64021229 | MS.gene66277:CDS | 45.0% | |
| TCTGGCACTTTGGACAAACT+AGG | + | chr6.4:64022083-64022102 | MS.gene66277:intron | 45.0% | |
| TGATGGTTGGAAGGATATGC+AGG | + | chr6.4:64021015-64021034 | MS.gene66277:CDS | 45.0% | |
| TTATATGGGACCCACACGAT+AGG | - | chr6.4:64022117-64022136 | None:intergenic | 45.0% | |
| TTGACTCTGTGTTGCGACAA+TGG | + | chr6.4:64021374-64021393 | MS.gene66277:CDS | 45.0% | |
| ! | AACCCTCTATCTTTCTGGCA+AGG | + | chr6.4:64020780-64020799 | MS.gene66277:CDS | 45.0% |
| ! | GGAATCTCTTGGCTTTCAAC+TGG | + | chr6.4:64022492-64022511 | MS.gene66277:intron | 45.0% |
| !! | TGGTGCCAAAAAGAGTGTTC+AGG | + | chr6.4:64021394-64021413 | MS.gene66277:CDS | 45.0% |
| CACTCCTATTGCCGTCTTCA+TGG | - | chr6.4:64021441-64021460 | None:intergenic | 50.0% | |
| CATGAAGACGGCAATAGGAG+TGG | + | chr6.4:64021439-64021458 | MS.gene66277:CDS | 50.0% | |
| CCTATTGCCGTCTTCATGGA+GGG | - | chr6.4:64021437-64021456 | None:intergenic | 50.0% | |
| GACAACCAGGGCAAGATAGA+TGG | - | chr6.4:64022403-64022422 | None:intergenic | 50.0% | |
| GGATGAACCCTCCATGAAGA+CGG | + | chr6.4:64021427-64021446 | MS.gene66277:CDS | 50.0% | |
| TCCTATTGCCGTCTTCATGG+AGG | - | chr6.4:64021438-64021457 | None:intergenic | 50.0% | |
| TGAAGACGGCAATAGGAGTG+GGG | + | chr6.4:64021441-64021460 | MS.gene66277:CDS | 50.0% | |
| TTGGTTTCCCGTTGCAGTTC+TGG | + | chr6.4:64021731-64021750 | MS.gene66277:intron | 50.0% | |
| ! | TGGTTTTCACCGAAACCAGG+AGG | + | chr6.4:64021045-64021064 | MS.gene66277:CDS | 50.0% |
| AGGTGCCTAGACCTATCGTG+TGG | + | chr6.4:64022103-64022122 | MS.gene66277:intron | 55.0% | |
| CCCTCCATGAAGACGGCAAT+AGG | + | chr6.4:64021434-64021453 | MS.gene66277:CDS | 55.0% | |
| CTACGCGGATAAGAGCCTCA+AGG | + | chr6.4:64020955-64020974 | MS.gene66277:CDS | 55.0% | |
| GCTGTTCTGCTCTCCTTGCA+TGG | + | chr6.4:64021614-64021633 | MS.gene66277:intron | 55.0% | |
| GGGGTGGAAGGAGTTCTGTA+AGG | + | chr6.4:64021460-64021479 | MS.gene66277:CDS | 55.0% | |
| GGTGCCTAGACCTATCGTGT+GGG | + | chr6.4:64022104-64022123 | MS.gene66277:intron | 55.0% | |
| AGACGGCAATAGGAGTGGGG+TGG | + | chr6.4:64021444-64021463 | MS.gene66277:CDS | 60.0% | |
| GGCAATAGGAGTGGGGTGGA+AGG | + | chr6.4:64021448-64021467 | MS.gene66277:CDS | 60.0% | |
| GGGACCCACACGATAGGTCT+AGG | - | chr6.4:64022111-64022130 | None:intergenic | 60.0% | |
| GGGAGCCATCTATCTTGCCC+TGG | + | chr6.4:64022395-64022414 | MS.gene66277:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 64020730 | 64022595 | 64020730 | ID=MS.gene66277 |
| chr6.4 | mRNA | 64020730 | 64022595 | 64020730 | ID=MS.gene66277.t1;Parent=MS.gene66277 |
| chr6.4 | exon | 64020730 | 64020801 | 64020730 | ID=MS.gene66277.t1.exon1;Parent=MS.gene66277.t1 |
| chr6.4 | CDS | 64020730 | 64020801 | 64020730 | ID=cds.MS.gene66277.t1;Parent=MS.gene66277.t1 |
| chr6.4 | exon | 64020881 | 64021231 | 64020881 | ID=MS.gene66277.t1.exon2;Parent=MS.gene66277.t1 |
| chr6.4 | CDS | 64020881 | 64021231 | 64020881 | ID=cds.MS.gene66277.t1;Parent=MS.gene66277.t1 |
| chr6.4 | exon | 64021323 | 64021562 | 64021323 | ID=MS.gene66277.t1.exon3;Parent=MS.gene66277.t1 |
| chr6.4 | CDS | 64021323 | 64021562 | 64021323 | ID=cds.MS.gene66277.t1;Parent=MS.gene66277.t1 |
| chr6.4 | exon | 64022566 | 64022595 | 64022566 | ID=MS.gene66277.t1.exon4;Parent=MS.gene66277.t1 |
| chr6.4 | CDS | 64022566 | 64022595 | 64022566 | ID=cds.MS.gene66277.t1;Parent=MS.gene66277.t1 |
| Gene Sequence |
| Protein sequence |
