Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66358.t1 | XP_013453216.1 | 97.7 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 2.60E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66358.t1 | Q8GYD2 | 75.5 | 220 | 52 | 1 | 1 | 218 | 1 | 220 | 6.4e-90 | 331.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66358.t1 | A0A072UBP5 | 97.7 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 1.8e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053883 | MS.gene66358 | PPI |
| MS.gene042624 | MS.gene66358 | PPI |
| MS.gene59695 | MS.gene66358 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66358.t1 | MTR_6g090585 | 97.706 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 4.31e-161 | 444 |
| MS.gene66358.t1 | MTR_6g090585 | 97.283 | 184 | 5 | 0 | 35 | 218 | 1 | 184 | 1.38e-135 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66358.t1 | AT4G29170 | 76.415 | 212 | 50 | 0 | 1 | 212 | 1 | 212 | 9.79e-123 | 347 |
| MS.gene66358.t1 | AT4G29170 | 74.619 | 197 | 50 | 0 | 16 | 212 | 1 | 197 | 1.15e-111 | 318 |
| MS.gene66358.t1 | AT4G29170 | 79.739 | 153 | 31 | 0 | 1 | 153 | 1 | 153 | 1.51e-85 | 250 |
Find 46 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATGAATTTGACTATT+TGG | 0.177522 | 6.4:+62940118 | MS.gene66358:CDS |
| CGAATCACAAGATTTCTTTC+TGG | 0.201715 | 6.4:+62936283 | MS.gene66358:CDS |
| CTGACTAATCACACCCTTCT+TGG | 0.326573 | 6.4:-62937897 | None:intergenic |
| TTGCCTCTCAGGTATACTTC+TGG | 0.329157 | 6.4:+62938450 | MS.gene66358:intron |
| TATTTAATCAGCTACTGCTT+TGG | 0.360341 | 6.4:-62940159 | None:intergenic |
| TCCTAGCTGCGCTGGAAATC+AGG | 0.370421 | 6.4:+62938478 | MS.gene66358:CDS |
| TGACTAATCACACCCTTCTT+GGG | 0.388123 | 6.4:-62937896 | None:intergenic |
| CTCATTATGCTTCAGCTGAA+TGG | 0.388609 | 6.4:-62938888 | None:intergenic |
| GCTTAAGGAGCTTGAGAAGA+TGG | 0.394802 | 6.4:+62937871 | MS.gene66358:intron |
| TAAAGATGTTGTCCAAAGTT+TGG | 0.424035 | 6.4:+62937925 | MS.gene66358:CDS |
| GCTGAAGCATAATGAGTTGA+AGG | 0.430393 | 6.4:+62938895 | MS.gene66358:CDS |
| GCAATGTGAGGCACTAAAGA+AGG | 0.431414 | 6.4:+62938709 | MS.gene66358:CDS |
| TTGATTCAGTCGAAGAAAAG+AGG | 0.470370 | 6.4:+62936215 | MS.gene66358:intron |
| CTCACATTGCTCGACAAGTT+GGG | 0.470737 | 6.4:-62938696 | None:intergenic |
| CTCATTGCTTCAAAGGCAGC+AGG | 0.480603 | 6.4:-62939036 | None:intergenic |
| GGTCATCATCCACCAAACTT+TGG | 0.481752 | 6.4:-62937937 | None:intergenic |
| CTTGTTTCAAAAGATAAGAT+AGG | 0.487809 | 6.4:+62937959 | MS.gene66358:CDS |
| AAATAACTTCCCTCAGGCTA+AGG | 0.509363 | 6.4:+62939404 | MS.gene66358:CDS |
| CCTCACATTGCTCGACAAGT+TGG | 0.509517 | 6.4:-62938697 | None:intergenic |
| TAATCAGCTACTGCTTTGGA+TGG | 0.511426 | 6.4:-62940155 | None:intergenic |
| TGAATTTGACTATTTGGAGA+TGG | 0.520246 | 6.4:+62940124 | MS.gene66358:CDS |
| TGAGAAGATGGGCCCCAAGA+AGG | 0.520689 | 6.4:+62937883 | MS.gene66358:CDS |
| AGATGTTGTCCAAAGTTTGG+TGG | 0.534526 | 6.4:+62937928 | MS.gene66358:CDS |
| AAAAGATAAGATAGGTACTT+CGG | 0.536894 | 6.4:+62937967 | MS.gene66358:CDS |
| TTCTTAACTCATTGCTTCAA+AGG | 0.538990 | 6.4:-62939043 | None:intergenic |
| CAATGTGAGGCACTAAAGAA+GGG | 0.540520 | 6.4:+62938710 | MS.gene66358:CDS |
| CTTAAGGAGCTTGAGAAGAT+GGG | 0.546225 | 6.4:+62937872 | MS.gene66358:CDS |
| GAGAAGATGGGCCCCAAGAA+GGG | 0.551371 | 6.4:+62937884 | MS.gene66358:CDS |
| ACAGCAGCTAACAGATGGAC+AGG | 0.552808 | 6.4:+62939200 | MS.gene66358:CDS |
| CTCATACAGCAGCTAACAGA+TGG | 0.553951 | 6.4:+62939195 | MS.gene66358:CDS |
| GAAGTTGTTCCTTAGCCTGA+GGG | 0.555081 | 6.4:-62939413 | None:intergenic |
| TGGAGTCTTCCTAGCTGCGC+TGG | 0.556716 | 6.4:+62938470 | MS.gene66358:CDS |
| GTGTTCAAATAACTTCCCTC+AGG | 0.572514 | 6.4:+62939398 | MS.gene66358:CDS |
| GAAGAAAAGAGGACTTTCGT+TGG | 0.576601 | 6.4:+62936226 | MS.gene66358:CDS |
| GCTACTGCTTTGGATGGAAG+AGG | 0.578314 | 6.4:-62940149 | None:intergenic |
| TTTCTAGGATGAACGAGAAG+CGG | 0.584116 | 6.4:+62938847 | MS.gene66358:intron |
| GACTAATCACACCCTTCTTG+GGG | 0.593541 | 6.4:-62937895 | None:intergenic |
| TGAAGTTGTTCCTTAGCCTG+AGG | 0.605758 | 6.4:-62939414 | None:intergenic |
| ACCTGATTTCCAGCGCAGCT+AGG | 0.611658 | 6.4:-62938479 | None:intergenic |
| AACTGCAAAACAGTGGTACA+CGG | 0.615147 | 6.4:+62938669 | MS.gene66358:CDS |
| GGCACTAAAGAAGGGGCGTG+AGG | 0.644601 | 6.4:+62938718 | MS.gene66358:CDS |
| ACAACTTCAAAACATGTACC+AGG | 0.647432 | 6.4:+62939428 | MS.gene66358:CDS |
| AATGTGAGGCACTAAAGAAG+GGG | 0.670205 | 6.4:+62938711 | MS.gene66358:CDS |
| CCAACTTGTCGAGCAATGTG+AGG | 0.684357 | 6.4:+62938697 | MS.gene66358:CDS |
| GATTCTGAACTGCAAAACAG+TGG | 0.686674 | 6.4:+62938662 | MS.gene66358:CDS |
| ACTTCAAAACATGTACCAGG+AGG | 0.734825 | 6.4:+62939431 | MS.gene66358:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACTATACAGATAAAA+TGG | - | chr6.4:62939083-62939102 | None:intergenic | 15.0% |
| !! | AAATTTATGAACATTGATAA+TGG | - | chr6.4:62936319-62936338 | None:intergenic | 15.0% |
| !! | AATAAAGCATACAAAAATTT+AGG | - | chr6.4:62937801-62937820 | None:intergenic | 15.0% |
| !! | ATAGGTTATATTTATAGAAA+AGG | - | chr6.4:62937316-62937335 | None:intergenic | 15.0% |
| !! | TCAAATAAACCAATTTAAAT+AGG | + | chr6.4:62938355-62938374 | MS.gene66358:intron | 15.0% |
| !!! | ATATTCTTATCTTTTTTATG+TGG | + | chr6.4:62939334-62939353 | MS.gene66358:intron | 15.0% |
| !!! | TTTTTTATGTGGATTAAAAA+TGG | + | chr6.4:62939345-62939364 | MS.gene66358:intron | 15.0% |
| !! | AAGTTATATCATTCCATTAA+AGG | - | chr6.4:62939578-62939597 | None:intergenic | 20.0% |
| !! | AATAAGATGTTTATCTAAAC+AGG | + | chr6.4:62937389-62937408 | MS.gene66358:intron | 20.0% |
| !! | ACTAATAAGGATAAAATTGA+TGG | - | chr6.4:62937653-62937672 | None:intergenic | 20.0% |
| !! | ATAGAAATGAATTGACATAA+AGG | - | chr6.4:62937711-62937730 | None:intergenic | 20.0% |
| !! | ATTTCTATAGAAATAGCTTA+AGG | - | chr6.4:62937416-62937435 | None:intergenic | 20.0% |
| !! | TAAAGGACTAAACTATTATT+TGG | - | chr6.4:62939664-62939683 | None:intergenic | 20.0% |
| !! | TAGAAAAAAAATGCAATGTT+AGG | - | chr6.4:62938833-62938852 | None:intergenic | 20.0% |
| !! | TGGGTGATAATATTAATAAA+AGG | - | chr6.4:62940005-62940024 | None:intergenic | 20.0% |
| !! | TTTCTATAGAAATAGCTTAA+GGG | - | chr6.4:62937415-62937434 | None:intergenic | 20.0% |
| !!! | AATGTTGTTTTTGTTTAGTT+AGG | + | chr6.4:62936358-62936377 | MS.gene66358:intron | 20.0% |
| !!! | ACGTTAAATTCTTTTTGTAT+AGG | - | chr6.4:62937285-62937304 | None:intergenic | 20.0% |
| !!! | AGGTTAAATTTTGAGTTTAT+GGG | + | chr6.4:62936938-62936957 | MS.gene66358:intron | 20.0% |
| !!! | ATGTTGTTTTTGTTTAGTTA+AGG | + | chr6.4:62936359-62936378 | MS.gene66358:intron | 20.0% |
| !!! | CTGTTTTTGTATATGTTATA+AGG | + | chr6.4:62937448-62937467 | MS.gene66358:intron | 20.0% |
| !!! | GTAGTGTTATATTTTGAAAT+AGG | - | chr6.4:62939709-62939728 | None:intergenic | 20.0% |
| !!! | TAACATTGCATTTTTTTTCT+AGG | + | chr6.4:62938832-62938851 | MS.gene66358:intron | 20.0% |
| !!! | TGATGTATTGGTATTAATTT+TGG | + | chr6.4:62939151-62939170 | MS.gene66358:intron | 20.0% |
| !!! | TTATGAATGAGATATTTTGA+CGG | + | chr6.4:62939821-62939840 | MS.gene66358:intron | 20.0% |
| !!! | TTTTTCAATCAAGACTAATA+AGG | - | chr6.4:62937666-62937685 | None:intergenic | 20.0% |
| ! | AAAAGATAAGATAGGTACTT+CGG | + | chr6.4:62937967-62937986 | MS.gene66358:CDS | 25.0% |
| ! | AAAAGTCATAACATGTAACA+TGG | - | chr6.4:62938104-62938123 | None:intergenic | 25.0% |
| ! | AACAGATGAATTTGACTATT+TGG | + | chr6.4:62940118-62940137 | MS.gene66358:CDS | 25.0% |
| ! | AAGAAAAACAGTTACTAAAC+AGG | - | chr6.4:62937004-62937023 | None:intergenic | 25.0% |
| ! | AATCGCTTTAACTCATTATT+TGG | + | chr6.4:62936094-62936113 | MS.gene66358:intron | 25.0% |
| ! | ATGAGTTAAAGCGATTTAAT+CGG | - | chr6.4:62936090-62936109 | None:intergenic | 25.0% |
| ! | ATGATGTAATTAGGTTACAT+TGG | - | chr6.4:62938600-62938619 | None:intergenic | 25.0% |
| ! | ATGATTGAATTTGTAGTGTT+TGG | + | chr6.4:62936539-62936558 | MS.gene66358:intron | 25.0% |
| ! | ATTTGATTCCTAAAAAAGCA+GGG | - | chr6.4:62938786-62938805 | None:intergenic | 25.0% |
| ! | CTTGTTTCAAAAGATAAGAT+AGG | + | chr6.4:62937959-62937978 | MS.gene66358:CDS | 25.0% |
| ! | GCAAAATTAATAGTTGAACT+AGG | + | chr6.4:62936561-62936580 | MS.gene66358:intron | 25.0% |
| ! | GTAGTTCATAACTAGTTATT+AGG | + | chr6.4:62939496-62939515 | MS.gene66358:intron | 25.0% |
| ! | TAACTATACAGATAAAATGG+AGG | - | chr6.4:62939080-62939099 | None:intergenic | 25.0% |
| ! | TAATAAAAGGACATGTAATG+TGG | - | chr6.4:62939992-62940011 | None:intergenic | 25.0% |
| ! | TGATGTAATTAGGTTACATT+GGG | - | chr6.4:62938599-62938618 | None:intergenic | 25.0% |
| ! | TGTTACAAAACTCACAATAA+AGG | - | chr6.4:62938961-62938980 | None:intergenic | 25.0% |
| ! | TTGTGTTCGTTAAAAATCAA+TGG | + | chr6.4:62936496-62936515 | MS.gene66358:intron | 25.0% |
| !! | ACTAGTTATTAGGCTTATTT+TGG | + | chr6.4:62939506-62939525 | MS.gene66358:intron | 25.0% |
| !! | ATGTTACATGTTATGACTTT+TGG | + | chr6.4:62938103-62938122 | MS.gene66358:intron | 25.0% |
| !! | ATTTTGTGAATGACCTTTAA+TGG | + | chr6.4:62939562-62939581 | MS.gene66358:intron | 25.0% |
| !! | GTTACTAAACAGGTATATTT+TGG | - | chr6.4:62936994-62937013 | None:intergenic | 25.0% |
| !! | TATCAAGTGAATAAGCATTT+TGG | - | chr6.4:62939944-62939963 | None:intergenic | 25.0% |
| !! | TTGCTATTCGATAAATTTGA+GGG | + | chr6.4:62939886-62939905 | MS.gene66358:intron | 25.0% |
| !!! | ACAAAAATTTAGGCTTTGTT+CGG | - | chr6.4:62937791-62937810 | None:intergenic | 25.0% |
| !!! | CTATCTTATCTTTTGAAACA+AGG | - | chr6.4:62937961-62937980 | None:intergenic | 25.0% |
| !!! | GAGGTTAAATTTTGAGTTTA+TGG | + | chr6.4:62936937-62936956 | MS.gene66358:intron | 25.0% |
| !!! | GGTTAAATTTTGAGTTTATG+GGG | + | chr6.4:62936939-62936958 | MS.gene66358:intron | 25.0% |
| !!! | GTCATTTTCATACTATATGA+TGG | + | chr6.4:62939305-62939324 | MS.gene66358:intron | 25.0% |
| !!! | GTGTTGTTTTTGTTTAGTTA+AGG | + | chr6.4:62936619-62936638 | MS.gene66358:intron | 25.0% |
| !!! | GTTAAATTTTGAGTTTATGG+GGG | + | chr6.4:62936940-62936959 | MS.gene66358:intron | 25.0% |
| !!! | TATGCTTATTTTAATGATGC+CGG | + | chr6.4:62939747-62939766 | MS.gene66358:intron | 25.0% |
| !!! | TTTGCTATTCGATAAATTTG+AGG | + | chr6.4:62939885-62939904 | MS.gene66358:intron | 25.0% |
| !!! | TTTTTGTATAGGCTCTAAAT+TGG | - | chr6.4:62937274-62937293 | None:intergenic | 25.0% |
| AACTAGTTATGAACTACACA+CGG | - | chr6.4:62939493-62939512 | None:intergenic | 30.0% | |
| ATGATAAGCGCTTATGTATA+AGG | - | chr6.4:62937343-62937362 | None:intergenic | 30.0% | |
| CATTTGATTCCTAAAAAAGC+AGG | - | chr6.4:62938787-62938806 | None:intergenic | 30.0% | |
| CTCAAATAAGCAATTCAAAC+AGG | + | chr6.4:62937582-62937601 | MS.gene66358:intron | 30.0% | |
| CTTATTCACTTGATACAACT+TGG | + | chr6.4:62939949-62939968 | MS.gene66358:intron | 30.0% | |
| GATCAATGCTTACAATTTGA+AGG | - | chr6.4:62939621-62939640 | None:intergenic | 30.0% | |
| GTGTTTGCAATGATGTAATT+AGG | - | chr6.4:62938609-62938628 | None:intergenic | 30.0% | |
| TAAACACTTGCGATATTGTT+TGG | - | chr6.4:62938320-62938339 | None:intergenic | 30.0% | |
| TAAAGATGTTGTCCAAAGTT+TGG | + | chr6.4:62937925-62937944 | MS.gene66358:CDS | 30.0% | |
| TAGTCCTTTAAATTGAACGT+CGG | + | chr6.4:62939674-62939693 | MS.gene66358:intron | 30.0% | |
| TATTGAAGTTAGCGATTCAA+AGG | - | chr6.4:62936046-62936065 | None:intergenic | 30.0% | |
| TGAATTTGACTATTTGGAGA+TGG | + | chr6.4:62940124-62940143 | MS.gene66358:CDS | 30.0% | |
| TTACATTGGGATACAATAGA+GGG | - | chr6.4:62938586-62938605 | None:intergenic | 30.0% | |
| TTCTGACATAGTTACATCAA+TGG | + | chr6.4:62939529-62939548 | MS.gene66358:intron | 30.0% | |
| TTCTTAACTCATTGCTTCAA+AGG | - | chr6.4:62939046-62939065 | None:intergenic | 30.0% | |
| TTTGGTCCTCAAAATTGTAA+AGG | - | chr6.4:62939926-62939945 | None:intergenic | 30.0% | |
| TTTGTCTGAATACTGTCATT+GGG | + | chr6.4:62939117-62939136 | MS.gene66358:intron | 30.0% | |
| TTTGTTAGTGTACCATCTTT+AGG | + | chr6.4:62938529-62938548 | MS.gene66358:intron | 30.0% | |
| ! | AATGGCTTTTAAATCTGCTA+GGG | - | chr6.4:62938873-62938892 | None:intergenic | 30.0% |
| ! | CGAAAAATGCTAAGATTTTC+TGG | + | chr6.4:62938390-62938409 | MS.gene66358:intron | 30.0% |
| ! | GACTGAGACTCTTTAATTTA+AGG | + | chr6.4:62939856-62939875 | MS.gene66358:intron | 30.0% |
| ! | GTTCTTCAATCTAGCTTATA+AGG | + | chr6.4:62937248-62937267 | MS.gene66358:intron | 30.0% |
| ! | TAGCATTTTTCGTTTTGCAT+TGG | - | chr6.4:62938382-62938401 | None:intergenic | 30.0% |
| ! | TATCATGTATAAGCTGACTT+AGG | + | chr6.4:62937105-62937124 | MS.gene66358:intron | 30.0% |
| ! | TGCATTGGTCCTATTTAAAT+TGG | - | chr6.4:62938367-62938386 | None:intergenic | 30.0% |
| ! | TTTTGTCTGAATACTGTCAT+TGG | + | chr6.4:62939116-62939135 | MS.gene66358:intron | 30.0% |
| !! | ATTGGTATTAATTTTGGCAG+AGG | + | chr6.4:62939157-62939176 | MS.gene66358:intron | 30.0% |
| !!! | ATATTTTCTCTCTGAAGCAA+TGG | + | chr6.4:62939376-62939395 | MS.gene66358:CDS | 30.0% |
| !!! | CTGCTTTTTTAGGAATCAAA+TGG | + | chr6.4:62938785-62938804 | MS.gene66358:intron | 30.0% |
| !!! | TTTTGCTGATTTTCAGCTTA+AGG | + | chr6.4:62937856-62937875 | MS.gene66358:intron | 30.0% |
| !!! | TTTTTTAGGAATCAAATGGC+TGG | + | chr6.4:62938789-62938808 | MS.gene66358:intron | 30.0% |
| AAACGCGCGTTAAAAATGAT+CGG | - | chr6.4:62936007-62936026 | None:intergenic | 35.0% | |
| ACAACTTCAAAACATGTACC+AGG | + | chr6.4:62939428-62939447 | MS.gene66358:CDS | 35.0% | |
| ACAGAATCCATAAACCGATT+CGG | - | chr6.4:62936150-62936169 | None:intergenic | 35.0% | |
| ACTAGTTATGAACTACACAC+GGG | - | chr6.4:62939492-62939511 | None:intergenic | 35.0% | |
| ATAAGCTATGAGCTCAAACA+CGG | - | chr6.4:62937622-62937641 | None:intergenic | 35.0% | |
| ATCACAGATAGCTATGCTTT+GGG | - | chr6.4:62940024-62940043 | None:intergenic | 35.0% | |
| ATCTGTTATACCAATCTGCA+TGG | - | chr6.4:62940105-62940124 | None:intergenic | 35.0% | |
| CAAATTTAACCTCACCAAAC+AGG | - | chr6.4:62936386-62936405 | None:intergenic | 35.0% | |
| CCTAAAAAAGCAGGGAAAAT+TGG | - | chr6.4:62938778-62938797 | None:intergenic | 35.0% | |
| CGAATCACAAGATTTCTTTC+TGG | + | chr6.4:62936283-62936302 | MS.gene66358:CDS | 35.0% | |
| CTTGTATTATTCTCTCTGTC+TGG | + | chr6.4:62938028-62938047 | MS.gene66358:intron | 35.0% | |
| GAAATCAGGTGAACTTCTAT+TGG | + | chr6.4:62938492-62938511 | MS.gene66358:intron | 35.0% | |
| GAACTATAAACAAGCATCAG+CGG | - | chr6.4:62938009-62938028 | None:intergenic | 35.0% | |
| GCTTATGTATAAGGTTGCAT+AGG | - | chr6.4:62937334-62937353 | None:intergenic | 35.0% | |
| GTCCTCAAAATTGTAAAGGT+CGG | - | chr6.4:62939922-62939941 | None:intergenic | 35.0% | |
| GTTACATTGGGATACAATAG+AGG | - | chr6.4:62938587-62938606 | None:intergenic | 35.0% | |
| GTTGTTCATTCATCCAAACA+AGG | - | chr6.4:62938129-62938148 | None:intergenic | 35.0% | |
| TACAAGCTAGTTGCTATGTT+TGG | + | chr6.4:62937046-62937065 | MS.gene66358:intron | 35.0% | |
| TAGAGGTTGAGACTATTTAG+AGG | + | chr6.4:62936818-62936837 | MS.gene66358:intron | 35.0% | |
| TAGGAGCAATGATCAATTAG+AGG | - | chr6.4:62938427-62938446 | None:intergenic | 35.0% | |
| TATAAGCTGCAAACCACTTA+TGG | + | chr6.4:62938277-62938296 | MS.gene66358:intron | 35.0% | |
| TATCACAGATAGCTATGCTT+TGG | - | chr6.4:62940025-62940044 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr6.4:62937132-62937151 | None:intergenic | 35.0% | |
| TGTTTAGTTAGGATCCTGTT+TGG | + | chr6.4:62936369-62936388 | MS.gene66358:intron | 35.0% | |
| TTGAGCTTATCAACTGACAT+AGG | + | chr6.4:62937148-62937167 | MS.gene66358:intron | 35.0% | |
| TTGATTCAGTCGAAGAAAAG+AGG | + | chr6.4:62936215-62936234 | MS.gene66358:intron | 35.0% | |
| ! | AAGCATAATGAGTTGAAGGT+TGG | + | chr6.4:62938899-62938918 | MS.gene66358:intron | 35.0% |
| ! | AGTTAAGGTTCTGATTGTTG+AGG | + | chr6.4:62936918-62936937 | MS.gene66358:intron | 35.0% |
| ! | CTGTTTGGTGAGGTTAAATT+TGG | + | chr6.4:62936384-62936403 | MS.gene66358:intron | 35.0% |
| ! | GAATGGCTTTTAAATCTGCT+AGG | - | chr6.4:62938874-62938893 | None:intergenic | 35.0% |
| ! | GGTGTTTTCATAAGCTATCT+TGG | + | chr6.4:62937469-62937488 | MS.gene66358:intron | 35.0% |
| ! | TACCGACCTTTACAATTTTG+AGG | + | chr6.4:62939917-62939936 | MS.gene66358:intron | 35.0% |
| !! | ATAGGTTTTGTGAGACTGTT+TGG | + | chr6.4:62937166-62937185 | MS.gene66358:intron | 35.0% |
| !! | CAAACACGGCATTTTGATAA+GGG | - | chr6.4:62937608-62937627 | None:intergenic | 35.0% |
| !! | CAGAAGTGTTAGTGATATAG+AGG | + | chr6.4:62936801-62936820 | MS.gene66358:intron | 35.0% |
| !! | TAGAAACTAGCGGATTGAAT+TGG | - | chr6.4:62937768-62937787 | None:intergenic | 35.0% |
| !! | TAGGTTTTGTGAGACTGTTT+GGG | + | chr6.4:62937167-62937186 | MS.gene66358:intron | 35.0% |
| !! | TCAAACACGGCATTTTGATA+AGG | - | chr6.4:62937609-62937628 | None:intergenic | 35.0% |
| !!! | CCAATTTTCCCTGCTTTTTT+AGG | + | chr6.4:62938775-62938794 | MS.gene66358:intron | 35.0% |
| !!! | GAATGAGATATTTTGACGGA+CGG | + | chr6.4:62939825-62939844 | MS.gene66358:intron | 35.0% |
| !!! | TTATGACTTTTGGCCTTGTT+TGG | + | chr6.4:62938113-62938132 | MS.gene66358:intron | 35.0% |
| AAATAACTTCCCTCAGGCTA+AGG | + | chr6.4:62939404-62939423 | MS.gene66358:CDS | 40.0% | |
| AACTGCAAAACAGTGGTACA+CGG | + | chr6.4:62938669-62938688 | MS.gene66358:CDS | 40.0% | |
| ACTTCAAAACATGTACCAGG+AGG | + | chr6.4:62939431-62939450 | MS.gene66358:CDS | 40.0% | |
| AGATGTTGTCCAAAGTTTGG+TGG | + | chr6.4:62937928-62937947 | MS.gene66358:CDS | 40.0% | |
| AGCTTAATCGAGATCCGAAT+CGG | + | chr6.4:62936133-62936152 | MS.gene66358:intron | 40.0% | |
| ATGATCGGAAGAGAAGAAGA+AGG | - | chr6.4:62935992-62936011 | None:intergenic | 40.0% | |
| ATGTTTCTCACCATGCAGAT+TGG | + | chr6.4:62940092-62940111 | MS.gene66358:intron | 40.0% | |
| CCAACGTATCAACCTAAAGA+TGG | - | chr6.4:62938544-62938563 | None:intergenic | 40.0% | |
| CTAGTTATGAACTACACACG+GGG | - | chr6.4:62939491-62939510 | None:intergenic | 40.0% | |
| CTCATTATGCTTCAGCTGAA+TGG | - | chr6.4:62938891-62938910 | None:intergenic | 40.0% | |
| CTTAAGGAGCTTGAGAAGAT+GGG | + | chr6.4:62937872-62937891 | MS.gene66358:CDS | 40.0% | |
| CTTTGTTCGGTAGAAACTAG+CGG | - | chr6.4:62937778-62937797 | None:intergenic | 40.0% | |
| GAAGAAAAGAGGACTTTCGT+TGG | + | chr6.4:62936226-62936245 | MS.gene66358:CDS | 40.0% | |
| GAATCGTGACACTGATGTAT+TGG | + | chr6.4:62939139-62939158 | MS.gene66358:intron | 40.0% | |
| GATTCTGAACTGCAAAACAG+TGG | + | chr6.4:62938662-62938681 | MS.gene66358:CDS | 40.0% | |
| GTGTTCAAATAACTTCCCTC+AGG | + | chr6.4:62939398-62939417 | MS.gene66358:CDS | 40.0% | |
| TATACCTGAGAGGCAAACAT+AGG | - | chr6.4:62938446-62938465 | None:intergenic | 40.0% | |
| TCGACCGACGTTCAATTTAA+AGG | - | chr6.4:62939681-62939700 | None:intergenic | 40.0% | |
| TCGCATGTGTTAATGTGTGT+CGG | + | chr6.4:62936745-62936764 | MS.gene66358:intron | 40.0% | |
| TCGGTATGCATGTCTTTCAT+TGG | + | chr6.4:62939785-62939804 | MS.gene66358:intron | 40.0% | |
| TGACTAATCACACCCTTCTT+GGG | - | chr6.4:62937899-62937918 | None:intergenic | 40.0% | |
| TTGTTCCCTGTATTGTGTCT+AGG | + | chr6.4:62939252-62939271 | MS.gene66358:intron | 40.0% | |
| ! | AATGTGAGGCACTAAAGAAG+GGG | + | chr6.4:62938711-62938730 | MS.gene66358:CDS | 40.0% |
| ! | CAATGTGAGGCACTAAAGAA+GGG | + | chr6.4:62938710-62938729 | MS.gene66358:CDS | 40.0% |
| ! | GCTGAAGCATAATGAGTTGA+AGG | + | chr6.4:62938895-62938914 | MS.gene66358:CDS | 40.0% |
| ! | TAATCAGCTACTGCTTTGGA+TGG | - | chr6.4:62940158-62940177 | None:intergenic | 40.0% |
| !! | CCATCTTTAGGTTGATACGT+TGG | + | chr6.4:62938541-62938560 | MS.gene66358:intron | 40.0% |
| !! | TTTCTAGGATGAACGAGAAG+CGG | + | chr6.4:62938847-62938866 | MS.gene66358:intron | 40.0% |
| !!! | GCTTATTTTAATGATGCCGG+TGG | + | chr6.4:62939750-62939769 | MS.gene66358:intron | 40.0% |
| AAATTGGCATCTGGTAGAGG+AGG | - | chr6.4:62938762-62938781 | None:intergenic | 45.0% | |
| AACACTTCTGATAGAAGCCG+TGG | - | chr6.4:62936791-62936810 | None:intergenic | 45.0% | |
| AACTGAAACGACTAACCTCC+TGG | - | chr6.4:62939449-62939468 | None:intergenic | 45.0% | |
| AAGCAGGGAAAATTGGCATC+TGG | - | chr6.4:62938771-62938790 | None:intergenic | 45.0% | |
| AGCTGCAAACCACTTATGGA+CGG | + | chr6.4:62938281-62938300 | MS.gene66358:intron | 45.0% | |
| CCCTGTATTGTGTCTAGGAA+GGG | + | chr6.4:62939257-62939276 | MS.gene66358:intron | 45.0% | |
| CCCTTCCTAGACACAATACA+GGG | - | chr6.4:62939260-62939279 | None:intergenic | 45.0% | |
| CTCACATTGCTCGACAAGTT+GGG | - | chr6.4:62938699-62938718 | None:intergenic | 45.0% | |
| CTCATACAGCAGCTAACAGA+TGG | + | chr6.4:62939195-62939214 | MS.gene66358:CDS | 45.0% | |
| CTGACTAATCACACCCTTCT+TGG | - | chr6.4:62937900-62937919 | None:intergenic | 45.0% | |
| GAAGTTGTTCCTTAGCCTGA+GGG | - | chr6.4:62939416-62939435 | None:intergenic | 45.0% | |
| GACTAATCACACCCTTCTTG+GGG | - | chr6.4:62937898-62937917 | None:intergenic | 45.0% | |
| GACTTAGGACCTGTTTGGAT+TGG | + | chr6.4:62937120-62937139 | MS.gene66358:intron | 45.0% | |
| GCTTAAGGAGCTTGAGAAGA+TGG | + | chr6.4:62937871-62937890 | MS.gene66358:intron | 45.0% | |
| GGAAAATTGGCATCTGGTAG+AGG | - | chr6.4:62938765-62938784 | None:intergenic | 45.0% | |
| GGTCATCATCCACCAAACTT+TGG | - | chr6.4:62937940-62937959 | None:intergenic | 45.0% | |
| TCCCTGTATTGTGTCTAGGA+AGG | + | chr6.4:62939256-62939275 | MS.gene66358:intron | 45.0% | |
| TCCCTTCCTAGACACAATAC+AGG | - | chr6.4:62939261-62939280 | None:intergenic | 45.0% | |
| TGAAGTTGTTCCTTAGCCTG+AGG | - | chr6.4:62939417-62939436 | None:intergenic | 45.0% | |
| TGGGATACAATAGAGGGCAA+GGG | - | chr6.4:62938580-62938599 | None:intergenic | 45.0% | |
| TTGCCTCTCAGGTATACTTC+TGG | + | chr6.4:62938450-62938469 | MS.gene66358:intron | 45.0% | |
| TTGGGATACAATAGAGGGCA+AGG | - | chr6.4:62938581-62938600 | None:intergenic | 45.0% | |
| ! | AAGCTGACTTAGGACCTGTT+TGG | + | chr6.4:62937115-62937134 | MS.gene66358:intron | 45.0% |
| ! | ACTCCAGAAGTATACCTGAG+AGG | - | chr6.4:62938456-62938475 | None:intergenic | 45.0% |
| ! | AGTTAGGATCCTGTTTGGTG+AGG | + | chr6.4:62936374-62936393 | MS.gene66358:intron | 45.0% |
| ! | GCAATGTGAGGCACTAAAGA+AGG | + | chr6.4:62938709-62938728 | MS.gene66358:CDS | 45.0% |
| ! | GTGTTAATGTGTGTCGGTGT+CGG | + | chr6.4:62936751-62936770 | MS.gene66358:intron | 45.0% |
| ! | TCGAGATCCGAATCGGTTTA+TGG | + | chr6.4:62936140-62936159 | MS.gene66358:intron | 45.0% |
| !!! | ATTTTTTTTTATGTAAATTA+TGG | + | chr6.4:62936473-62936492 | MS.gene66358:intron | 5.0% |
| ACAGCAGCTAACAGATGGAC+AGG | + | chr6.4:62939200-62939219 | MS.gene66358:CDS | 50.0% | |
| CCAACTTGTCGAGCAATGTG+AGG | + | chr6.4:62938697-62938716 | MS.gene66358:CDS | 50.0% | |
| CCGACTTCAATAGTCACCAC+CGG | - | chr6.4:62939769-62939788 | None:intergenic | 50.0% | |
| CCGGTGGTGACTATTGAAGT+CGG | + | chr6.4:62939766-62939785 | MS.gene66358:intron | 50.0% | |
| CCTCACATTGCTCGACAAGT+TGG | - | chr6.4:62938700-62938719 | None:intergenic | 50.0% | |
| CTCATTGCTTCAAAGGCAGC+AGG | - | chr6.4:62939039-62939058 | None:intergenic | 50.0% | |
| CTTCTGATAGAAGCCGTGGT+CGG | - | chr6.4:62936787-62936806 | None:intergenic | 50.0% | |
| GCAAACACGATGTGCAGCTT+CGG | + | chr6.4:62938621-62938640 | MS.gene66358:intron | 50.0% | |
| GCTGCAAACCACTTATGGAC+GGG | + | chr6.4:62938282-62938301 | MS.gene66358:intron | 50.0% | |
| GCTTATGACCCGTCCATAAG+TGG | - | chr6.4:62938293-62938312 | None:intergenic | 50.0% | |
| TCCTGTGTTAGTGTCTGCGT+CGG | - | chr6.4:62936655-62936674 | None:intergenic | 50.0% | |
| TGCTCCTATGTTTGCCTCTC+AGG | + | chr6.4:62938439-62938458 | MS.gene66358:intron | 50.0% | |
| TTGTGTCTAGGAAGGGAGAG+TGG | + | chr6.4:62939264-62939283 | MS.gene66358:intron | 50.0% | |
| ! | GCTACTGCTTTGGATGGAAG+AGG | - | chr6.4:62940152-62940171 | None:intergenic | 50.0% |
| ACCGACGCAGACACTAACAC+AGG | + | chr6.4:62936651-62936670 | MS.gene66358:intron | 55.0% | |
| ACCTGATTTCCAGCGCAGCT+AGG | - | chr6.4:62938482-62938501 | None:intergenic | 55.0% | |
| CACACGGGGATTGCAGATTG+AGG | - | chr6.4:62939477-62939496 | None:intergenic | 55.0% | |
| GAGAAGATGGGCCCCAAGAA+GGG | + | chr6.4:62937884-62937903 | MS.gene66358:CDS | 55.0% | |
| TCCTAGCTGCGCTGGAAATC+AGG | + | chr6.4:62938478-62938497 | MS.gene66358:CDS | 55.0% | |
| TGAGAAGATGGGCCCCAAGA+AGG | + | chr6.4:62937883-62937902 | MS.gene66358:CDS | 55.0% | |
| ! | TAGAAGCCGTGGTCGGTGTT+CGG | - | chr6.4:62936780-62936799 | None:intergenic | 55.0% |
| TGGAGTCTTCCTAGCTGCGC+TGG | + | chr6.4:62938470-62938489 | MS.gene66358:CDS | 60.0% | |
| ! | GGCACTAAAGAAGGGGCGTG+AGG | + | chr6.4:62938718-62938737 | MS.gene66358:CDS | 60.0% |
| CGGACACCGAACACCGACCA+CGG | + | chr6.4:62936771-62936790 | MS.gene66358:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 62935982 | 62940178 | 62935982 | ID=MS.gene66358 |
| chr6.4 | mRNA | 62935982 | 62940178 | 62935982 | ID=MS.gene66358.t1;Parent=MS.gene66358 |
| chr6.4 | exon | 62935982 | 62935984 | 62935982 | ID=MS.gene66358.t1.exon1;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62935982 | 62935984 | 62935982 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62936224 | 62936304 | 62936224 | ID=MS.gene66358.t1.exon2;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62936224 | 62936304 | 62936224 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62937872 | 62937988 | 62937872 | ID=MS.gene66358.t1.exon3;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62937872 | 62937988 | 62937872 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62938461 | 62938499 | 62938461 | ID=MS.gene66358.t1.exon4;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62938461 | 62938499 | 62938461 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62938638 | 62938745 | 62938638 | ID=MS.gene66358.t1.exon5;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62938638 | 62938745 | 62938638 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62938854 | 62938916 | 62938854 | ID=MS.gene66358.t1.exon6;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62938854 | 62938916 | 62938854 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62939006 | 62939057 | 62939006 | ID=MS.gene66358.t1.exon7;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62939006 | 62939057 | 62939006 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62939177 | 62939221 | 62939177 | ID=MS.gene66358.t1.exon8;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62939177 | 62939221 | 62939177 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62939373 | 62939452 | 62939373 | ID=MS.gene66358.t1.exon9;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62939373 | 62939452 | 62939373 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| chr6.4 | exon | 62940110 | 62940178 | 62940110 | ID=MS.gene66358.t1.exon10;Parent=MS.gene66358.t1 |
| chr6.4 | CDS | 62940110 | 62940178 | 62940110 | ID=cds.MS.gene66358.t1;Parent=MS.gene66358.t1 |
| Gene Sequence |
| Protein sequence |
