Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042624.t1 | XP_003614532.1 | 97.8 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 5.90E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042624.t1 | Q9FX64 | 59.7 | 226 | 91 | 0 | 1 | 226 | 1 | 226 | 6.9e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042624.t1 | G7JZE5 | 97.8 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 4.3e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75051 | MS.gene042624 | PPI |
| MS.gene042624 | MS.gene064021 | PPI |
| MS.gene042624 | MS.gene030311 | PPI |
| MS.gene042624 | MS.gene66358 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042624.t1 | MTR_5g055150 | 97.788 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 1.68e-161 | 445 |
| MS.gene042624.t1 | MTR_5g055150 | 96.970 | 132 | 4 | 0 | 1 | 132 | 1 | 132 | 2.24e-86 | 253 |
| MS.gene042624.t1 | MTR_5g055130 | 57.009 | 107 | 11 | 3 | 3 | 107 | 17 | 90 | 1.25e-21 | 92.4 |
| MS.gene042624.t1 | MTR_5g055130 | 57.009 | 107 | 11 | 3 | 3 | 107 | 17 | 90 | 1.29e-21 | 92.4 |
| MS.gene042624.t1 | MTR_4g007850 | 52.381 | 105 | 13 | 3 | 3 | 107 | 17 | 84 | 7.57e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042624.t1 | AT1G13330 | 75.664 | 226 | 55 | 0 | 1 | 226 | 1 | 226 | 6.41e-125 | 353 |
Find 54 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCCCAAAGAATTTA+AGG | 0.146216 | 5.2:+46746005 | MS.gene042624:CDS |
| AAGCGGGAAGATTTCGTTTA+AGG | 0.154812 | 5.2:+46743569 | MS.gene042624:CDS |
| CCTTCAGCGTTATCGGATTT+TGG | 0.169276 | 5.2:-46743213 | None:intergenic |
| AAAAGAAACCTTAAATTCTT+TGG | 0.192821 | 5.2:-46746013 | None:intergenic |
| AAAGAATGTTCAGGGATTTA+TGG | 0.204783 | 5.2:+46745959 | MS.gene042624:CDS |
| TGTGATTTGGGTAGCAAAAT+AGG | 0.266860 | 5.2:+46743457 | MS.gene042624:intron |
| AAGATTTCGTTTAAGGAGTA+TGG | 0.268065 | 5.2:+46743576 | MS.gene042624:CDS |
| GAGGAACAGAAGAAGGTTAT+TGG | 0.286993 | 5.2:+46743702 | MS.gene042624:CDS |
| TGATTAAGCTCTTCGTTATT+CGG | 0.289927 | 5.2:-46743642 | None:intergenic |
| TCAACTGCCACGCGTTCTTC+TGG | 0.310781 | 5.2:-46745895 | None:intergenic |
| GCTTCTTACCCTGTGGTATC+AGG | 0.318511 | 5.2:-46746172 | None:intergenic |
| AAAGAAACCTTAAATTCTTT+GGG | 0.320146 | 5.2:-46746012 | None:intergenic |
| GAGAGTACCTTCAGCGTTAT+CGG | 0.333249 | 5.2:-46743220 | None:intergenic |
| AAGAATGTTCAGGGATTTAT+GGG | 0.335669 | 5.2:+46745960 | MS.gene042624:CDS |
| TTAAATTCTTTGGGATCCTT+AGG | 0.363696 | 5.2:-46746003 | None:intergenic |
| TTTGCTTCAGGTTCAAGAAC+TGG | 0.375807 | 5.2:+46745828 | MS.gene042624:intron |
| GGAAGCGTAAAAGAATGTTC+AGG | 0.398097 | 5.2:+46745950 | MS.gene042624:CDS |
| CATTATTTACCTGCATTCTC+AGG | 0.432067 | 5.2:-46745716 | None:intergenic |
| GAACATTGCAGGAGGAGCTT+GGG | 0.444399 | 5.2:+46746102 | MS.gene042624:intron |
| TGAACATTGCAGGAGGAGCT+TGG | 0.451875 | 5.2:+46746101 | MS.gene042624:intron |
| TAAATATATCATTGTCCCCT+TGG | 0.461490 | 5.2:-46746197 | None:intergenic |
| GTTATTGGTGAGGTTGAAGC+AGG | 0.462602 | 5.2:+46743717 | MS.gene042624:CDS |
| GGCAGTTGAGAGTATGTTGT+TGG | 0.482115 | 5.2:+46745909 | MS.gene042624:CDS |
| CACAGGGTAAGAAGCGGCCA+AGG | 0.494504 | 5.2:+46746180 | MS.gene042624:CDS |
| CGAAGAGCTTAATCAGATGA+AGG | 0.516162 | 5.2:+46743650 | MS.gene042624:CDS |
| GTTACGTGGAGGTGTTACTT+TGG | 0.529557 | 5.2:+46745867 | MS.gene042624:CDS |
| GCAGCTTGAGGAACAGAAGA+AGG | 0.536057 | 5.2:+46743695 | MS.gene042624:CDS |
| AGAAGTTGACCTGAGAATGC+AGG | 0.568107 | 5.2:+46745707 | MS.gene042624:CDS |
| ACAGAAGAAGGTTATTGGTG+AGG | 0.575228 | 5.2:+46743707 | MS.gene042624:CDS |
| GTGGAGGTGTTACTTTGGTG+AGG | 0.581557 | 5.2:+46745872 | MS.gene042624:CDS |
| CTAGAATATGATGAAGATGT+TGG | 0.582142 | 5.2:+46746125 | MS.gene042624:CDS |
| GAAGCGTAAAAGAATGTTCA+GGG | 0.583026 | 5.2:+46745951 | MS.gene042624:CDS |
| AGCGGCGATACAGAAAGCGT+TGG | 0.587447 | 5.2:+46743533 | MS.gene042624:CDS |
| ATGCAGTGACCTGATACCAC+AGG | 0.591833 | 5.2:+46746163 | MS.gene042624:CDS |
| GTTGCAATCAAATTTAACAA+TGG | 0.597161 | 5.2:+46745668 | MS.gene042624:CDS |
| CCTCACTGAGAACTCACCTA+AGG | 0.600047 | 5.2:+46745987 | MS.gene042624:CDS |
| CCAAAATCCGATAACGCTGA+AGG | 0.602208 | 5.2:+46743213 | MS.gene042624:CDS |
| AAAGTTTAATCTGAAGAAAG+CGG | 0.612912 | 5.2:+46743515 | MS.gene042624:CDS |
| ACAGGGTAAGAAGCGGCCAA+GGG | 0.615308 | 5.2:+46746181 | MS.gene042624:CDS |
| GCCGCTGAATACGCAAAATG+TGG | 0.625677 | 5.2:+46743479 | MS.gene042624:CDS |
| CTTAGGTGAGTTCTCAGTGA+GGG | 0.632171 | 5.2:-46745986 | None:intergenic |
| TGATTTGCAAAAGCAGCTTG+AGG | 0.635715 | 5.2:+46743683 | MS.gene042624:CDS |
| TGGAGAAAATAAGTCAGTGG+AGG | 0.640854 | 5.2:+46745929 | MS.gene042624:CDS |
| CTTGGCCGCTTCTTACCCTG+TGG | 0.641684 | 5.2:-46746179 | None:intergenic |
| CAGGGTAAGAAGCGGCCAAG+GGG | 0.643585 | 5.2:+46746182 | MS.gene042624:CDS |
| CGTGTTGAACTTCGTCAACG+AGG | 0.649248 | 5.2:+46743324 | MS.gene042624:CDS |
| TGTTGGAGAAAATAAGTCAG+TGG | 0.651386 | 5.2:+46745926 | MS.gene042624:CDS |
| TGATACCACAGGGTAAGAAG+CGG | 0.675121 | 5.2:+46746174 | MS.gene042624:CDS |
| GCTGAATACGCAAAATGTGG+CGG | 0.678440 | 5.2:+46743482 | MS.gene042624:CDS |
| GGTGAGGCCAGAAGAACGCG+TGG | 0.679059 | 5.2:+46745888 | MS.gene042624:CDS |
| ATCAAGTTGAACAAGTTACG+TGG | 0.698323 | 5.2:+46745853 | MS.gene042624:CDS |
| TGCAGTGACCTGATACCACA+GGG | 0.698743 | 5.2:+46746164 | MS.gene042624:CDS |
| AAGTTGAACAAGTTACGTGG+AGG | 0.731034 | 5.2:+46745856 | MS.gene042624:CDS |
| CCTTAGGTGAGTTCTCAGTG+AGG | 0.748594 | 5.2:-46745987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGTATATTTTTACAA+TGG | - | chr5.2:46745294-46745313 | None:intergenic | 10.0% |
| !! | AATTATATTAGTAGTAATAG+TGG | - | chr5.2:46746082-46746101 | None:intergenic | 15.0% |
| !! | ATTATATTAGTAGTAATAGT+GGG | - | chr5.2:46746081-46746100 | None:intergenic | 15.0% |
| !! | TTAAATCACTAAAATTGAAA+TGG | - | chr5.2:46744629-46744648 | None:intergenic | 15.0% |
| !!! | AATTTTAGTGATTTAAAAAG+AGG | + | chr5.2:46744633-46744652 | MS.gene042624:intron | 15.0% |
| !!! | TAATTAATTACAGTGTTTTA+AGG | - | chr5.2:46744208-46744227 | None:intergenic | 15.0% |
| !! | AAAAGAAACCTTAAATTCTT+TGG | - | chr5.2:46746016-46746035 | None:intergenic | 20.0% |
| !! | AAAGAAACCTTAAATTCTTT+GGG | - | chr5.2:46746015-46746034 | None:intergenic | 20.0% |
| !! | AATCAGATAAAACAATGAAA+TGG | - | chr5.2:46745513-46745532 | None:intergenic | 20.0% |
| !! | AATGTTGTTCAATTAAGATA+TGG | + | chr5.2:46745789-46745808 | MS.gene042624:intron | 20.0% |
| !! | AATTAAAGAGAGAAAATGTT+AGG | - | chr5.2:46743290-46743309 | None:intergenic | 20.0% |
| !! | AATTGATGAATGTAACTTAT+TGG | + | chr5.2:46745630-46745649 | MS.gene042624:intron | 20.0% |
| !! | TTTCAATTAATGAAAAGAGA+CGG | + | chr5.2:46745227-46745246 | MS.gene042624:intron | 20.0% |
| !!! | ATTGTTTTGTTTTTGTGATT+TGG | + | chr5.2:46743444-46743463 | MS.gene042624:intron | 20.0% |
| !!! | TCAATTAGTTTCTATTGATT+TGG | + | chr5.2:46743376-46743395 | MS.gene042624:intron | 20.0% |
| !!! | TGTTTTAAAATGAAATGAAC+AGG | + | chr5.2:46744699-46744718 | MS.gene042624:intron | 20.0% |
| !!! | TTATTTGAGTGTTTTGATTT+GGG | + | chr5.2:46743809-46743828 | MS.gene042624:intron | 20.0% |
| !!! | TTGTTTTGTTTTTGTGATTT+GGG | + | chr5.2:46743445-46743464 | MS.gene042624:intron | 20.0% |
| !!! | TTTAAAAGATGTTTAAGTTG+TGG | + | chr5.2:46744900-46744919 | MS.gene042624:intron | 20.0% |
| !!! | TTTGGTAATGTAATTGAATT+GGG | + | chr5.2:46743754-46743773 | MS.gene042624:intron | 20.0% |
| !!! | TTTTGGTAATGTAATTGAAT+TGG | + | chr5.2:46743753-46743772 | MS.gene042624:intron | 20.0% |
| ! | AAAGTTTAATCTGAAGAAAG+CGG | + | chr5.2:46743515-46743534 | MS.gene042624:CDS | 25.0% |
| ! | ATTTCGAATAACAATCTAGT+TGG | + | chr5.2:46745554-46745573 | MS.gene042624:intron | 25.0% |
| ! | CTAATATAATTGAACATTGC+AGG | + | chr5.2:46746091-46746110 | MS.gene042624:intron | 25.0% |
| ! | GTTGCAATCAAATTTAACAA+TGG | + | chr5.2:46745668-46745687 | MS.gene042624:CDS | 25.0% |
| ! | TATGAAATGAAACGAAGAAA+TGG | - | chr5.2:46743265-46743284 | None:intergenic | 25.0% |
| ! | TGGTATTTATACTGTGTTTA+TGG | + | chr5.2:46743396-46743415 | MS.gene042624:intron | 25.0% |
| ! | TTAATTAATTGAACTCGATG+CGG | + | chr5.2:46743781-46743800 | MS.gene042624:intron | 25.0% |
| ! | TTTCTTTGCTGAAAATGTAT+TGG | + | chr5.2:46745402-46745421 | MS.gene042624:intron | 25.0% |
| !! | CATCTATAAAATTTTGCTTC+AGG | + | chr5.2:46745816-46745835 | MS.gene042624:intron | 25.0% |
| !!! | ATTTAAGGTTTCTTTTTGTC+CGG | + | chr5.2:46746020-46746039 | MS.gene042624:intron | 25.0% |
| !!! | GTGTTTTAAAACCTAAATGA+TGG | + | chr5.2:46744548-46744567 | MS.gene042624:intron | 25.0% |
| !!! | GTTATTTGAGTGTTTTGATT+TGG | + | chr5.2:46743808-46743827 | MS.gene042624:intron | 25.0% |
| !!! | GTTTTAAAACGTAAATGAAC+AGG | + | chr5.2:46743992-46744011 | MS.gene042624:intron | 25.0% |
| !!! | GTTTTTTTTCTCAATTTGAG+CGG | + | chr5.2:46744083-46744102 | MS.gene042624:intron | 25.0% |
| !!! | TATTTTAATCCGCTCAAATT+GGG | - | chr5.2:46745078-46745097 | None:intergenic | 25.0% |
| !!! | TCCTGTTCATTTAGTTTTTA+AGG | - | chr5.2:46743889-46743908 | None:intergenic | 25.0% |
| !!! | TCTTTTAAAACCGCTTAAAT+CGG | - | chr5.2:46744933-46744952 | None:intergenic | 25.0% |
| !!! | TTATTTTAATCCGCTCAAAT+TGG | - | chr5.2:46745079-46745098 | None:intergenic | 25.0% |
| !!! | TTTAAAAGAGGTTTAAGTTG+TGG | + | chr5.2:46744107-46744126 | MS.gene042624:intron | 25.0% |
| AAAACAGTTGAATCATGACA+TGG | + | chr5.2:46744659-46744678 | MS.gene042624:intron | 30.0% | |
| AAACAGTTGAATCATGACAT+GGG | + | chr5.2:46744660-46744679 | MS.gene042624:intron | 30.0% | |
| AAAGAATGTTCAGGGATTTA+TGG | + | chr5.2:46745959-46745978 | MS.gene042624:CDS | 30.0% | |
| AAAGTAATTCAATCATGACC+TGG | + | chr5.2:46743951-46743970 | MS.gene042624:intron | 30.0% | |
| AAGAATGTTCAGGGATTTAT+GGG | + | chr5.2:46745960-46745979 | MS.gene042624:CDS | 30.0% | |
| AAGATTTCGTTTAAGGAGTA+TGG | + | chr5.2:46743576-46743595 | MS.gene042624:CDS | 30.0% | |
| ATATAATTGAACATTGCAGG+AGG | + | chr5.2:46746094-46746113 | MS.gene042624:intron | 30.0% | |
| ATTAATGAAAAGAGACGGAA+CGG | + | chr5.2:46745232-46745251 | MS.gene042624:intron | 30.0% | |
| ATTCCAGTTAATGTTGAAAC+TGG | + | chr5.2:46745579-46745598 | MS.gene042624:intron | 30.0% | |
| CTAGAATATGATGAAGATGT+TGG | + | chr5.2:46746125-46746144 | MS.gene042624:CDS | 30.0% | |
| CTATAGTTTGGTTATTTGAG+TGG | + | chr5.2:46744050-46744069 | MS.gene042624:intron | 30.0% | |
| GATGATTCAATTGATTGAAC+TGG | + | chr5.2:46744014-46744033 | MS.gene042624:intron | 30.0% | |
| GCCTTAAAAACTAAATGAAC+AGG | + | chr5.2:46743885-46743904 | MS.gene042624:intron | 30.0% | |
| TAAGGATCCCAAAGAATTTA+AGG | + | chr5.2:46746005-46746024 | MS.gene042624:CDS | 30.0% | |
| TCAAATCCTCTCAAATTTGA+CGG | - | chr5.2:46745453-46745472 | None:intergenic | 30.0% | |
| TCAGCAAAGAAAAATATCAG+TGG | - | chr5.2:46745394-46745413 | None:intergenic | 30.0% | |
| TCCCTTTCAACAATGTAAAA+AGG | - | chr5.2:46745756-46745775 | None:intergenic | 30.0% | |
| TGATTAAGCTCTTCGTTATT+CGG | - | chr5.2:46743645-46743664 | None:intergenic | 30.0% | |
| TTATTTGAGTAGCTTAACTG+TGG | + | chr5.2:46744463-46744482 | MS.gene042624:intron | 30.0% | |
| TTATTTGAGTGGTTTAGTTG+TGG | + | chr5.2:46744768-46744787 | MS.gene042624:intron | 30.0% | |
| TTCAATCAATTGAATCATCC+AGG | - | chr5.2:46744013-46744032 | None:intergenic | 30.0% | |
| TTGAAAGGGAATTAGTGATT+TGG | + | chr5.2:46745766-46745785 | MS.gene042624:intron | 30.0% | |
| TTGCTGAAAATGTATTGGAA+CGG | + | chr5.2:46745407-46745426 | MS.gene042624:intron | 30.0% | |
| ! | CAGGTATGGTTAAAATGTTT+TGG | + | chr5.2:46743736-46743755 | MS.gene042624:intron | 30.0% |
| ! | GCCTTTTTACATTGTTGAAA+GGG | + | chr5.2:46745752-46745771 | MS.gene042624:intron | 30.0% |
| ! | TACGGAGTATTTCTCAAATT+AGG | + | chr5.2:46745265-46745284 | MS.gene042624:intron | 30.0% |
| ! | TCTTTAAAAACCGCTCAAAT+CGG | - | chr5.2:46744140-46744159 | None:intergenic | 30.0% |
| ! | TGCCTTTTTACATTGTTGAA+AGG | + | chr5.2:46745751-46745770 | MS.gene042624:intron | 30.0% |
| ! | TTGGATAGTCTTGAAAAAAG+CGG | + | chr5.2:46743552-46743571 | MS.gene042624:CDS | 30.0% |
| !! | TTAAATTCTTTGGGATCCTT+AGG | - | chr5.2:46746006-46746025 | None:intergenic | 30.0% |
| !!! | AATTTGAGCGGTTTTAAAAG+AGG | + | chr5.2:46744095-46744114 | MS.gene042624:intron | 30.0% |
| !!! | CAGTGTTTTAAAGACTAAAC+AGG | - | chr5.2:46745137-46745156 | None:intergenic | 30.0% |
| !!! | CTTTTAAAACCGCTTAAATC+GGG | - | chr5.2:46744932-46744951 | None:intergenic | 30.0% |
| !!! | GATTTAAGCGGTTTTAAAAG+AGG | + | chr5.2:46744932-46744951 | MS.gene042624:intron | 30.0% |
| !!! | TCTTTTAAAACCGCTCAAAT+CGG | - | chr5.2:46744096-46744115 | None:intergenic | 30.0% |
| !!! | TGTTTTAATCCGCTCAAATT+GGG | - | chr5.2:46744289-46744308 | None:intergenic | 30.0% |
| !!! | TTGTTTTAATCCGCTCAAAT+TGG | - | chr5.2:46744290-46744309 | None:intergenic | 30.0% |
| !!! | TTTTGATTTGGGTTTGTTTC+TGG | + | chr5.2:46743820-46743839 | MS.gene042624:intron | 30.0% |
| AAAAGAACTACGATAGTGAC+CGG | - | chr5.2:46746042-46746061 | None:intergenic | 35.0% | |
| AAACGCTCAAATAACTGAAC+CGG | - | chr5.2:46744349-46744368 | None:intergenic | 35.0% | |
| AACAAACCGACAAAATCTCT+TGG | - | chr5.2:46744324-46744343 | None:intergenic | 35.0% | |
| AACCAAACTATAGACAGTAC+TGG | - | chr5.2:46744043-46744062 | None:intergenic | 35.0% | |
| AACCAGTACTGTCTATAGTT+TGG | + | chr5.2:46744038-46744057 | MS.gene042624:intron | 35.0% | |
| AACGGGTACTATCTATAGTT+TGG | + | chr5.2:46744745-46744764 | MS.gene042624:intron | 35.0% | |
| AACTGGTACTATCTACAGTT+CGG | + | chr5.2:46744440-46744459 | MS.gene042624:intron | 35.0% | |
| AAGACTAAACAGGCATCAAA+CGG | - | chr5.2:46745127-46745146 | None:intergenic | 35.0% | |
| AAGTAACCGTCAAATTTGAG+AGG | + | chr5.2:46745444-46745463 | MS.gene042624:intron | 35.0% | |
| AGTTAATGTTGAAACTGGTG+AGG | + | chr5.2:46745584-46745603 | MS.gene042624:intron | 35.0% | |
| CAATTGATTGAACTCTGAAC+TGG | + | chr5.2:46745197-46745216 | MS.gene042624:intron | 35.0% | |
| CATTATTTACCTGCATTCTC+AGG | - | chr5.2:46745719-46745738 | None:intergenic | 35.0% | |
| CTCTGGTGAAAATCTCAATA+TGG | - | chr5.2:46745173-46745192 | None:intergenic | 35.0% | |
| GAAGCGTAAAAGAATGTTCA+GGG | + | chr5.2:46745951-46745970 | MS.gene042624:CDS | 35.0% | |
| GAGAATGCAGGTAAATAATG+TGG | + | chr5.2:46745719-46745738 | MS.gene042624:intron | 35.0% | |
| GTTCAATCAATTGAACACTC+TGG | - | chr5.2:46745190-46745209 | None:intergenic | 35.0% | |
| TCAAGTGATTGAACTGTGAA+CGG | + | chr5.2:46744727-46744746 | MS.gene042624:intron | 35.0% | |
| TCACCAGTTTCAACATTAAC+TGG | - | chr5.2:46745585-46745604 | None:intergenic | 35.0% | |
| TGATTTCATCCCAATTTGAG+CGG | + | chr5.2:46744277-46744296 | MS.gene042624:intron | 35.0% | |
| TGTTGGAGAAAATAAGTCAG+TGG | + | chr5.2:46745926-46745945 | MS.gene042624:CDS | 35.0% | |
| ! | CTTTAAAAACCGCTCAAATC+GGG | - | chr5.2:46744139-46744158 | None:intergenic | 35.0% |
| ! | TAAATGATGGAACTGTGAAC+CGG | + | chr5.2:46744561-46744580 | MS.gene042624:intron | 35.0% |
| ! | TGCTTTAAACCGCTCAAATT+GGG | - | chr5.2:46744495-46744514 | None:intergenic | 35.0% |
| ! | TGGATAGTCTTGAAAAAAGC+GGG | + | chr5.2:46743553-46743572 | MS.gene042624:CDS | 35.0% |
| ! | TGTGATTTGGGTAGCAAAAT+AGG | + | chr5.2:46743457-46743476 | MS.gene042624:intron | 35.0% |
| !! | AGTTATTTGAGCGTTTTGAC+CGG | + | chr5.2:46744353-46744372 | MS.gene042624:intron | 35.0% |
| !! | ATCAAGTTGAACAAGTTACG+TGG | + | chr5.2:46745853-46745872 | MS.gene042624:CDS | 35.0% |
| !!! | CTTTTAAAACCGCTCAAATC+AGG | - | chr5.2:46744800-46744819 | None:intergenic | 35.0% |
| !!! | CTTTTAAAACCGCTCAAATC+GGG | - | chr5.2:46744800-46744819 | None:intergenic | 35.0% |
| !!! | GATTTGAGCGGTTTTAAAAG+AGG | + | chr5.2:46744800-46744819 | MS.gene042624:intron | 35.0% |
| !!! | TAGGTTTTAAAACACCGAAC+TGG | - | chr5.2:46744543-46744562 | None:intergenic | 35.0% |
| AAAGCAGTTGAATCATGACC+TGG | + | chr5.2:46744401-46744420 | MS.gene042624:intron | 40.0% | |
| AAAGCAGTTGAATGTTGACC+TGG | + | chr5.2:46743855-46743874 | MS.gene042624:intron | 40.0% | |
| AACCAAAGTGAAGATAGCAC+CGG | - | chr5.2:46744583-46744602 | None:intergenic | 40.0% | |
| AACGCTCAAATAACTGAACC+GGG | - | chr5.2:46744348-46744367 | None:intergenic | 40.0% | |
| AAGCGGGAAGATTTCGTTTA+AGG | + | chr5.2:46743569-46743588 | MS.gene042624:CDS | 40.0% | |
| AAGTTGAACAAGTTACGTGG+AGG | + | chr5.2:46745856-46745875 | MS.gene042624:CDS | 40.0% | |
| ACAGAAGAAGGTTATTGGTG+AGG | + | chr5.2:46743707-46743726 | MS.gene042624:CDS | 40.0% | |
| ATCAAACGGACAAAACCACT+GGG | - | chr5.2:46745113-46745132 | None:intergenic | 40.0% | |
| CAAGTGATTGAACTGTGAAC+GGG | + | chr5.2:46744728-46744747 | MS.gene042624:intron | 40.0% | |
| CGAAGAGCTTAATCAGATGA+AGG | + | chr5.2:46743650-46743669 | MS.gene042624:CDS | 40.0% | |
| CGATTTCATCCCAATTTGAG+CGG | + | chr5.2:46745066-46745085 | MS.gene042624:intron | 40.0% | |
| CGGAACGGAATACAATGATA+CGG | + | chr5.2:46745247-46745266 | MS.gene042624:intron | 40.0% | |
| GACTCAACCATACATCAAAC+CGG | - | chr5.2:46744186-46744205 | None:intergenic | 40.0% | |
| GAGGAACAGAAGAAGGTTAT+TGG | + | chr5.2:46743702-46743721 | MS.gene042624:CDS | 40.0% | |
| GGTTCACAGTTCCATCATTT+AGG | - | chr5.2:46744562-46744581 | None:intergenic | 40.0% | |
| TAACTGTGACCAAGAGGTTT+CGG | + | chr5.2:46744957-46744976 | MS.gene042624:intron | 40.0% | |
| TAATTGAACTCGATGCGGTT+TGG | + | chr5.2:46743786-46743805 | MS.gene042624:intron | 40.0% | |
| TAATTGTGACCTAGACGTTC+CGG | + | chr5.2:46744164-46744183 | MS.gene042624:intron | 40.0% | |
| TCAATCATGACCTGGATGAT+TGG | + | chr5.2:46743959-46743978 | MS.gene042624:intron | 40.0% | |
| TGGAGAAAATAAGTCAGTGG+AGG | + | chr5.2:46745929-46745948 | MS.gene042624:CDS | 40.0% | |
| TTAAACCGCTCAAATTGGGA+CGG | - | chr5.2:46744491-46744510 | None:intergenic | 40.0% | |
| ! | CCATCTCCAAGAGATTTTGT+CGG | + | chr5.2:46744315-46744334 | MS.gene042624:intron | 40.0% |
| ! | CTGCTTTAAACCGCTCAAAT+TGG | - | chr5.2:46744496-46744515 | None:intergenic | 40.0% |
| ! | GGAAGCGTAAAAGAATGTTC+AGG | + | chr5.2:46745950-46745969 | MS.gene042624:CDS | 40.0% |
| ! | TGATTTGCAAAAGCAGCTTG+AGG | + | chr5.2:46743683-46743702 | MS.gene042624:CDS | 40.0% |
| ! | TTTGCTTCAGGTTCAAGAAC+TGG | + | chr5.2:46745828-46745847 | MS.gene042624:intron | 40.0% |
| !! | AGGATGATTCGTTTTGATCG+CGG | + | chr5.2:46743905-46743924 | MS.gene042624:intron | 40.0% |
| !! | GTTATTTGAGCGTTTTGACC+GGG | + | chr5.2:46744354-46744373 | MS.gene042624:intron | 40.0% |
| !! | TTATTTGAGCGTTTTGACCG+GGG | + | chr5.2:46744355-46744374 | MS.gene042624:intron | 40.0% |
| !! | TTTTGACCGGGGTTTGTTTA+GGG | + | chr5.2:46744366-46744385 | MS.gene042624:intron | 40.0% |
| !! | TTTTGATCGCGGTTTGTTTC+TGG | + | chr5.2:46743916-46743935 | MS.gene042624:intron | 40.0% |
| !!! | GTTTTTAAGGCGAATCATCC+AGG | - | chr5.2:46743876-46743895 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTCCCGATTTAAG+CGG | + | chr5.2:46744920-46744939 | MS.gene042624:intron | 40.0% |
| !!! | TGGTTTTGTCCTGATTTGAG+CGG | + | chr5.2:46744832-46744851 | MS.gene042624:intron | 40.0% |
| ACCTGAATGATTCGCCAGTT+CGG | + | chr5.2:46744526-46744545 | MS.gene042624:intron | 45.0% | |
| AGAAGTTGACCTGAGAATGC+AGG | + | chr5.2:46745707-46745726 | MS.gene042624:CDS | 45.0% | |
| ATAATTGAGCCATCACCCAG+TGG | + | chr5.2:46745095-46745114 | MS.gene042624:intron | 45.0% | |
| ATCGAACTAGCCAATCATCC+AGG | - | chr5.2:46743972-46743991 | None:intergenic | 45.0% | |
| CATCAAACGGACAAAACCAC+TGG | - | chr5.2:46745114-46745133 | None:intergenic | 45.0% | |
| CCAAAATCCGATAACGCTGA+AGG | + | chr5.2:46743213-46743232 | MS.gene042624:CDS | 45.0% | |
| CCGACAAAATCTCTTGGAGA+TGG | - | chr5.2:46744318-46744337 | None:intergenic | 45.0% | |
| CTTAGGTGAGTTCTCAGTGA+GGG | - | chr5.2:46745989-46746008 | None:intergenic | 45.0% | |
| GAGGTTTAACTGTGACCAAG+AGG | + | chr5.2:46744951-46744970 | MS.gene042624:intron | 45.0% | |
| GCTGAATACGCAAAATGTGG+CGG | + | chr5.2:46743482-46743501 | MS.gene042624:CDS | 45.0% | |
| GTTATTGGTGAGGTTGAAGC+AGG | + | chr5.2:46743717-46743736 | MS.gene042624:CDS | 45.0% | |
| TACATCAAACCGGAACGTCT+AGG | - | chr5.2:46744176-46744195 | None:intergenic | 45.0% | |
| TACATCGAACCGAAACCTCT+TGG | - | chr5.2:46744969-46744988 | None:intergenic | 45.0% | |
| TGATACCACAGGGTAAGAAG+CGG | + | chr5.2:46746174-46746193 | MS.gene042624:CDS | 45.0% | |
| TGTTGAAACTGGTGAGGACT+TGG | + | chr5.2:46745590-46745609 | MS.gene042624:intron | 45.0% | |
| ! | AGACGTTCCGGTTTGATGTA+TGG | + | chr5.2:46744176-46744195 | MS.gene042624:intron | 45.0% |
| ! | AGAGGTTTCGGTTCGATGTA+TGG | + | chr5.2:46744969-46744988 | MS.gene042624:intron | 45.0% |
| ! | CCTTCAGCGTTATCGGATTT+TGG | - | chr5.2:46743216-46743235 | None:intergenic | 45.0% |
| ! | GCCACATTTTGCGTATTCAG+CGG | - | chr5.2:46743483-46743502 | None:intergenic | 45.0% |
| ! | GGCAGTTGAGAGTATGTTGT+TGG | + | chr5.2:46745909-46745928 | MS.gene042624:CDS | 45.0% |
| ! | TGGATTTGTCCCGATTTGAG+CGG | + | chr5.2:46744127-46744146 | MS.gene042624:intron | 45.0% |
| !! | AACCGGTGCTATCTTCACTT+TGG | + | chr5.2:46744578-46744597 | MS.gene042624:intron | 45.0% |
| !! | CGGTTTGTTTCTGGTTTGAG+GGG | + | chr5.2:46743925-46743944 | MS.gene042624:intron | 45.0% |
| !! | GAGAGTACCTTCAGCGTTAT+CGG | - | chr5.2:46743223-46743242 | None:intergenic | 45.0% |
| !! | GCGGTTTGTTTCTGGTTTGA+GGG | + | chr5.2:46743924-46743943 | MS.gene042624:intron | 45.0% |
| !! | GGGTTTGTTTCTGGTTTGAG+AGG | + | chr5.2:46743829-46743848 | MS.gene042624:intron | 45.0% |
| !! | GTTACGTGGAGGTGTTACTT+TGG | + | chr5.2:46745867-46745886 | MS.gene042624:CDS | 45.0% |
| !! | GTTTTGACCGGGGTTTGTTT+AGG | + | chr5.2:46744365-46744384 | MS.gene042624:intron | 45.0% |
| !!! | GATTTTGTCGGTTTGTTGCC+CGG | + | chr5.2:46744327-46744346 | MS.gene042624:intron | 45.0% |
| !!! | TGGTTTTGTCCCGATTTGAG+CGG | + | chr5.2:46744788-46744807 | MS.gene042624:intron | 45.0% |
| ACCGAACTGGCGAATCATTC+AGG | - | chr5.2:46744530-46744549 | None:intergenic | 50.0% | |
| ATGCAGTGACCTGATACCAC+AGG | + | chr5.2:46746163-46746182 | MS.gene042624:CDS | 50.0% | |
| CCTCACTGAGAACTCACCTA+AGG | + | chr5.2:46745987-46746006 | MS.gene042624:CDS | 50.0% | |
| CCTTAGGTGAGTTCTCAGTG+AGG | - | chr5.2:46745990-46746009 | None:intergenic | 50.0% | |
| CGTGTTGAACTTCGTCAACG+AGG | + | chr5.2:46743324-46743343 | MS.gene042624:CDS | 50.0% | |
| CTCGAACCCTAAACAAACCC+CGG | - | chr5.2:46744375-46744394 | None:intergenic | 50.0% | |
| GAACATTGCAGGAGGAGCTT+GGG | + | chr5.2:46746102-46746121 | MS.gene042624:intron | 50.0% | |
| GCAGCTTGAGGAACAGAAGA+AGG | + | chr5.2:46743695-46743714 | MS.gene042624:CDS | 50.0% | |
| GCCGCTGAATACGCAAAATG+TGG | + | chr5.2:46743479-46743498 | MS.gene042624:CDS | 50.0% | |
| GCTTCTTACCCTGTGGTATC+AGG | - | chr5.2:46746175-46746194 | None:intergenic | 50.0% | |
| TGAACATTGCAGGAGGAGCT+TGG | + | chr5.2:46746101-46746120 | MS.gene042624:intron | 50.0% | |
| TGCAGTGACCTGATACCACA+GGG | + | chr5.2:46746164-46746183 | MS.gene042624:CDS | 50.0% | |
| TGGTGAGGTTGAAGCAGGTA+TGG | + | chr5.2:46743722-46743741 | MS.gene042624:intron | 50.0% | |
| TGGTTCCGTCCCAATTTGAG+CGG | + | chr5.2:46744483-46744502 | MS.gene042624:intron | 50.0% | |
| ! | GGGGTTTGTTTAGGGTTCGA+GGG | + | chr5.2:46744374-46744393 | MS.gene042624:intron | 50.0% |
| ! | GGGTTTGTTTAGGGTTCGAG+GGG | + | chr5.2:46744375-46744394 | MS.gene042624:intron | 50.0% |
| !! | CGCGGTTTGTTTCTGGTTTG+AGG | + | chr5.2:46743923-46743942 | MS.gene042624:intron | 50.0% |
| !! | GTGGAGGTGTTACTTTGGTG+AGG | + | chr5.2:46745872-46745891 | MS.gene042624:CDS | 50.0% |
| ACAGGGTAAGAAGCGGCCAA+GGG | + | chr5.2:46746181-46746200 | MS.gene042624:CDS | 55.0% | |
| CGGACAAAACCACTGGGTGA+TGG | - | chr5.2:46745107-46745126 | None:intergenic | 55.0% | |
| TCAACTGCCACGCGTTCTTC+TGG | - | chr5.2:46745898-46745917 | None:intergenic | 55.0% | |
| ! | AGCGGCGATACAGAAAGCGT+TGG | + | chr5.2:46743533-46743552 | MS.gene042624:CDS | 55.0% |
| ! | CGGGGTTTGTTTAGGGTTCG+AGG | + | chr5.2:46744373-46744392 | MS.gene042624:intron | 55.0% |
| CACAGGGTAAGAAGCGGCCA+AGG | + | chr5.2:46746180-46746199 | MS.gene042624:CDS | 60.0% | |
| CAGGGTAAGAAGCGGCCAAG+GGG | + | chr5.2:46746182-46746201 | MS.gene042624:CDS | 60.0% | |
| CTTGGCCGCTTCTTACCCTG+TGG | - | chr5.2:46746182-46746201 | None:intergenic | 60.0% | |
| GGTGAGGCCAGAAGAACGCG+TGG | + | chr5.2:46745888-46745907 | MS.gene042624:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 46743207 | 46746211 | 46743207 | ID=MS.gene042624 |
| chr5.2 | mRNA | 46743207 | 46746211 | 46743207 | ID=MS.gene042624.t1;Parent=MS.gene042624 |
| chr5.2 | exon | 46743207 | 46743234 | 46743207 | ID=MS.gene042624.t1.exon1;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46743207 | 46743234 | 46743207 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| chr5.2 | exon | 46743320 | 46743345 | 46743320 | ID=MS.gene042624.t1.exon2;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46743320 | 46743345 | 46743320 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| chr5.2 | exon | 46743471 | 46743738 | 46743471 | ID=MS.gene042624.t1.exon3;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46743471 | 46743738 | 46743471 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| chr5.2 | exon | 46745658 | 46745728 | 46745658 | ID=MS.gene042624.t1.exon4;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46745658 | 46745728 | 46745658 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| chr5.2 | exon | 46745838 | 46746026 | 46745838 | ID=MS.gene042624.t1.exon5;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46745838 | 46746026 | 46745838 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| chr5.2 | exon | 46746113 | 46746211 | 46746113 | ID=MS.gene042624.t1.exon6;Parent=MS.gene042624.t1 |
| chr5.2 | CDS | 46746113 | 46746211 | 46746113 | ID=cds.MS.gene042624.t1;Parent=MS.gene042624.t1 |
| Gene Sequence |
| Protein sequence |
