Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59695.t1 | XP_003614532.1 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 2.90E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59695.t1 | Q9FX64 | 58.8 | 226 | 93 | 0 | 1 | 226 | 1 | 226 | 9.1e-63 | 241.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59695.t1 | G7JZE5 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 2.1e-113 | 417.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59695 | MS.gene030311 | PPI |
| MS.gene59695 | MS.gene064021 | PPI |
| MS.gene59695 | MS.gene75051 | PPI |
| MS.gene59695 | MS.gene66358 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59695.t1 | MTR_5g055150 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 5.33e-160 | 441 |
| MS.gene59695.t1 | MTR_5g055150 | 96.212 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 9.10e-86 | 252 |
| MS.gene59695.t1 | MTR_5g055130 | 56.075 | 107 | 12 | 3 | 3 | 107 | 17 | 90 | 2.51e-21 | 91.7 |
| MS.gene59695.t1 | MTR_5g055130 | 56.075 | 107 | 12 | 3 | 3 | 107 | 17 | 90 | 2.60e-21 | 91.7 |
| MS.gene59695.t1 | MTR_4g007850 | 51.429 | 105 | 14 | 3 | 3 | 107 | 17 | 84 | 2.12e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59695.t1 | AT1G13330 | 74.779 | 226 | 57 | 0 | 1 | 226 | 1 | 226 | 5.93e-124 | 350 |
Find 53 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCCCAAAGAATTTA+AGG | 0.146216 | 5.4:+43560571 | MS.gene59695:CDS |
| AGGCGGGAAGATTTCGTTTA+AGG | 0.166866 | 5.4:+43558471 | MS.gene59695:CDS |
| CCTTCAGCGTTATCGGATTT+TGG | 0.169276 | 5.4:-43558115 | None:intergenic |
| AAAAGAAACCTTAAATTCTT+TGG | 0.192821 | 5.4:-43560579 | None:intergenic |
| AAAGAATGTTCAGGGATTTA+TGG | 0.204783 | 5.4:+43560525 | MS.gene59695:CDS |
| TGTGATTTGGGTAGCAAAAT+AGG | 0.266860 | 5.4:+43558359 | MS.gene59695:intron |
| AAGATTTCGTTTAAGGAGTA+TGG | 0.268065 | 5.4:+43558478 | MS.gene59695:CDS |
| GAGGAACAGAAGAAGGTTAT+TGG | 0.286993 | 5.4:+43558604 | MS.gene59695:CDS |
| GCTTCTTACCTTGCGGTATC+AGG | 0.289306 | 5.4:-43560741 | None:intergenic |
| TCATTAAGCTCTTCGTTATT+CGG | 0.289927 | 5.4:-43558544 | None:intergenic |
| AAAGAAACCTTAAATTCTTT+GGG | 0.320146 | 5.4:-43560578 | None:intergenic |
| GAGAGTACCTTCAGCGTTAT+CGG | 0.333249 | 5.4:-43558122 | None:intergenic |
| TCAACTGCCACACGTTCTTC+TGG | 0.335666 | 5.4:-43560461 | None:intergenic |
| AAGAATGTTCAGGGATTTAT+GGG | 0.335669 | 5.4:+43560526 | MS.gene59695:CDS |
| TTAAATTCTTTGGGATCCTT+AGG | 0.363696 | 5.4:-43560569 | None:intergenic |
| TCTGCTTCAGGTTCAAGAAC+TGG | 0.380712 | 5.4:+43560394 | MS.gene59695:intron |
| GGAAGCGTAAAAGAATGTTC+AGG | 0.398097 | 5.4:+43560516 | MS.gene59695:CDS |
| GCGTTGGATAGTCTTGAAAA+AGG | 0.415178 | 5.4:+43558451 | MS.gene59695:CDS |
| CATTATTTACCTGCATTCTC+AGG | 0.432067 | 5.4:-43560282 | None:intergenic |
| GTTATTGGTGAGGTTGAAGC+AGG | 0.462602 | 5.4:+43558619 | MS.gene59695:CDS |
| CGCAAGGTAAGAAGCGGCCA+AGG | 0.470510 | 5.4:+43560749 | MS.gene59695:CDS |
| CGAAGAGCTTAATGAGATGA+AGG | 0.479417 | 5.4:+43558552 | MS.gene59695:CDS |
| TGAACATTTCAGGAGGAGCT+TGG | 0.493045 | 5.4:+43560670 | MS.gene59695:intron |
| TAAATATATCACTGTCCCCT+TGG | 0.500127 | 5.4:-43560766 | None:intergenic |
| GTTACGTGGAGGTGTTACTT+TGG | 0.529557 | 5.4:+43560433 | MS.gene59695:CDS |
| GCAGCTTGAGGAACAGAAGA+AGG | 0.536057 | 5.4:+43558597 | MS.gene59695:CDS |
| CTTGGCCGCTTCTTACCTTG+CGG | 0.561944 | 5.4:-43560748 | None:intergenic |
| GGCAGTTGAGAGTATGTTGT+CGG | 0.563137 | 5.4:+43560475 | MS.gene59695:CDS |
| AGAAGTTGACCTGAGAATGC+AGG | 0.568107 | 5.4:+43560273 | MS.gene59695:CDS |
| CTAGAATATGATGAAGATGT+TGG | 0.573213 | 5.4:+43560694 | MS.gene59695:CDS |
| ACAGAAGAAGGTTATTGGTG+AGG | 0.575228 | 5.4:+43558609 | MS.gene59695:CDS |
| GTGGAGGTGTTACTTTGGTG+AGG | 0.581557 | 5.4:+43560438 | MS.gene59695:CDS |
| GAAGCGTAAAAGAATGTTCA+GGG | 0.583026 | 5.4:+43560517 | MS.gene59695:CDS |
| AGCGGCGATACAGAAAGCGT+TGG | 0.587447 | 5.4:+43558435 | MS.gene59695:CDS |
| GTTGCAATCAAATTTAACAA+TGG | 0.597161 | 5.4:+43560234 | MS.gene59695:CDS |
| CCTCACTGAGAACTCACCTA+AGG | 0.600047 | 5.4:+43560553 | MS.gene59695:CDS |
| CCAAAATCCGATAACGCTGA+AGG | 0.602208 | 5.4:+43558115 | MS.gene59695:CDS |
| GCAAGGTAAGAAGCGGCCAA+GGG | 0.610905 | 5.4:+43560750 | MS.gene59695:CDS |
| AAAGTTTAATCTGAAGAAAG+CGG | 0.612912 | 5.4:+43558417 | MS.gene59695:CDS |
| GCCGCTGAATACGCAAAATG+TGG | 0.625677 | 5.4:+43558381 | MS.gene59695:CDS |
| TTCAGTGACCTGATACCGCA+AGG | 0.632104 | 5.4:+43560733 | MS.gene59695:CDS |
| CTTAGGTGAGTTCTCAGTGA+GGG | 0.632171 | 5.4:-43560552 | None:intergenic |
| TGATTTGCAAAAGCAGCTTG+AGG | 0.635715 | 5.4:+43558585 | MS.gene59695:CDS |
| CAAGGTAAGAAGCGGCCAAG+GGG | 0.641563 | 5.4:+43560751 | MS.gene59695:CDS |
| TGATACCGCAAGGTAAGAAG+CGG | 0.649173 | 5.4:+43560743 | MS.gene59695:CDS |
| CGTGTTGAACTTCGTCAACG+AGG | 0.649248 | 5.4:+43558226 | MS.gene59695:CDS |
| CGGAGAAAATAAGTCAGTGG+AGG | 0.655882 | 5.4:+43560495 | MS.gene59695:CDS |
| GCTGAATACGCAAAATGTGG+CGG | 0.678440 | 5.4:+43558384 | MS.gene59695:CDS |
| GGTGAGGCCAGAAGAACGTG+TGG | 0.679059 | 5.4:+43560454 | MS.gene59695:CDS |
| TGTCGGAGAAAATAAGTCAG+TGG | 0.683795 | 5.4:+43560492 | MS.gene59695:CDS |
| ATCAAGTTGAACAAGTTACG+TGG | 0.698323 | 5.4:+43560419 | MS.gene59695:CDS |
| AAGTTGAACAAGTTACGTGG+AGG | 0.731034 | 5.4:+43560422 | MS.gene59695:CDS |
| CCTTAGGTGAGTTCTCAGTG+AGG | 0.748594 | 5.4:-43560553 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAAAATGTAATTGAATT+GGG | + | chr5.4:43558657-43558676 | MS.gene59695:intron | 15.0% |
| !!! | AATTGTGTATATTTTAACAA+CGG | - | chr5.4:43559879-43559898 | None:intergenic | 15.0% |
| !!! | TTTTGAAAATGTAATTGAAT+TGG | + | chr5.4:43558656-43558675 | MS.gene59695:intron | 15.0% |
| !! | AAAAGAAACCTTAAATTCTT+TGG | - | chr5.4:43560582-43560601 | None:intergenic | 20.0% |
| !! | AAAGAAACCTTAAATTCTTT+GGG | - | chr5.4:43560581-43560600 | None:intergenic | 20.0% |
| !! | AATTAAAGAGAGAAAATGTT+AGG | - | chr5.4:43558192-43558211 | None:intergenic | 20.0% |
| !! | AATTTGAGTGATTTAAAAAG+AGG | + | chr5.4:43559565-43559584 | MS.gene59695:intron | 20.0% |
| !! | ATTTCAAATAACAATCTAGT+AGG | + | chr5.4:43560109-43560128 | MS.gene59695:intron | 20.0% |
| !! | CTTTAATTAATGAAAAGAGA+TGG | + | chr5.4:43559809-43559828 | MS.gene59695:intron | 20.0% |
| !! | GTTATATTAGTAGTAATAGT+AGG | - | chr5.4:43560650-43560669 | None:intergenic | 20.0% |
| !! | TCAGATAAAACAAAACAAAA+TGG | - | chr5.4:43560066-43560085 | None:intergenic | 20.0% |
| !! | TCATTAATTAAAGATAGTAC+CGG | - | chr5.4:43559802-43559821 | None:intergenic | 20.0% |
| !!! | AGATTAATTACAGTGTTTTA+AGG | - | chr5.4:43559144-43559163 | None:intergenic | 20.0% |
| !!! | ATTGTTGTTCAATTAAGATA+TGG | + | chr5.4:43560355-43560374 | MS.gene59695:intron | 20.0% |
| !!! | ATTGTTTTGTTTTTGTGATT+TGG | + | chr5.4:43558346-43558365 | MS.gene59695:intron | 20.0% |
| !!! | TCAATTAGTTTCTATTGATT+TGG | + | chr5.4:43558278-43558297 | MS.gene59695:intron | 20.0% |
| !!! | TCTTTTTAAATCACTCAAAT+TGG | - | chr5.4:43559566-43559585 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTTTGTGATTT+GGG | + | chr5.4:43558347-43558366 | MS.gene59695:intron | 20.0% |
| ! | AAAGTTTAATCTGAAGAAAG+CGG | + | chr5.4:43558417-43558436 | MS.gene59695:CDS | 25.0% |
| ! | AGTGATTTAAAAAGAGGTTT+GGG | + | chr5.4:43559571-43559590 | MS.gene59695:intron | 25.0% |
| ! | ATTAATGAAAAGAGATGGAA+CGG | + | chr5.4:43559814-43559833 | MS.gene59695:intron | 25.0% |
| ! | CTAATATAACTGAACATTTC+AGG | + | chr5.4:43560660-43560679 | MS.gene59695:intron | 25.0% |
| ! | GAGTAGTTTAATAATTGCTA+TGG | + | chr5.4:43559633-43559652 | MS.gene59695:intron | 25.0% |
| ! | GTTGCAATCAAATTTAACAA+TGG | + | chr5.4:43560234-43560253 | MS.gene59695:CDS | 25.0% |
| ! | TATGAAATGAAACGAAGAAA+TGG | - | chr5.4:43558167-43558186 | None:intergenic | 25.0% |
| ! | TGGTATTTATACTGTGTTTA+TGG | + | chr5.4:43558298-43558317 | MS.gene59695:intron | 25.0% |
| !! | AAAGTATCTCTCAAATTAGT+AGG | + | chr5.4:43559850-43559869 | MS.gene59695:intron | 25.0% |
| !! | AATTGATGAATGTAACTTGT+TGG | + | chr5.4:43560196-43560215 | MS.gene59695:intron | 25.0% |
| !!! | ATTTAAGGTTTCTTTTTGTC+CGG | + | chr5.4:43560586-43560605 | MS.gene59695:intron | 25.0% |
| !!! | GTGTTTTAAAACCTAAATGA+TGG | + | chr5.4:43559480-43559499 | MS.gene59695:intron | 25.0% |
| !!! | GTTTTAAAACGTAAATGAAC+AGG | + | chr5.4:43558930-43558949 | MS.gene59695:intron | 25.0% |
| !!! | TCCTGTTCATTTAGTTTTTA+AGG | - | chr5.4:43558792-43558811 | None:intergenic | 25.0% |
| !!! | TTTAAAAGAGGTTTAAGTTG+TGG | + | chr5.4:43559044-43559063 | MS.gene59695:intron | 25.0% |
| AAAGAATGTTCAGGGATTTA+TGG | + | chr5.4:43560525-43560544 | MS.gene59695:CDS | 30.0% | |
| AAAGTAATTCAATCATGACC+TGG | + | chr5.4:43558889-43558908 | MS.gene59695:intron | 30.0% | |
| AACCAAACTATAGATAGTAC+TGG | - | chr5.4:43558981-43559000 | None:intergenic | 30.0% | |
| AACCAGTACTATCTATAGTT+TGG | + | chr5.4:43558976-43558995 | MS.gene59695:intron | 30.0% | |
| AAGAATGTTCAGGGATTTAT+GGG | + | chr5.4:43560526-43560545 | MS.gene59695:CDS | 30.0% | |
| AAGATTTCGTTTAAGGAGTA+TGG | + | chr5.4:43558478-43558497 | MS.gene59695:CDS | 30.0% | |
| ATATAACTGAACATTTCAGG+AGG | + | chr5.4:43560663-43560682 | MS.gene59695:intron | 30.0% | |
| ATCAAATCCTCTCAAATTTG+AGG | - | chr5.4:43560009-43560028 | None:intergenic | 30.0% | |
| ATTCCAGTTATTGTTGAAAC+TGG | + | chr5.4:43560145-43560164 | MS.gene59695:intron | 30.0% | |
| ATTGCTGAAAAAAGATGGAA+CGG | + | chr5.4:43559962-43559981 | MS.gene59695:intron | 30.0% | |
| CATCTATAAAATTCTGCTTC+AGG | + | chr5.4:43560382-43560401 | MS.gene59695:intron | 30.0% | |
| CTAGAATATGATGAAGATGT+TGG | + | chr5.4:43560694-43560713 | MS.gene59695:CDS | 30.0% | |
| CTATAGTTTGGTTATTTGAG+TGG | + | chr5.4:43558988-43559007 | MS.gene59695:intron | 30.0% | |
| CTTCTATTGCTGAAAAAAGA+TGG | + | chr5.4:43559957-43559976 | MS.gene59695:intron | 30.0% | |
| GAGTGATTTAAAAAGAGGTT+TGG | + | chr5.4:43559570-43559589 | MS.gene59695:intron | 30.0% | |
| GCCTTAAAAACTAAATGAAC+AGG | + | chr5.4:43558788-43558807 | MS.gene59695:intron | 30.0% | |
| GTTCAATCAATTGAACAATC+TGG | - | chr5.4:43559773-43559792 | None:intergenic | 30.0% | |
| TAAGGATCCCAAAGAATTTA+AGG | + | chr5.4:43560571-43560590 | MS.gene59695:CDS | 30.0% | |
| TCAAATCCTCTCAAATTTGA+GGG | - | chr5.4:43560008-43560027 | None:intergenic | 30.0% | |
| TCAGCAATAGAAGATATCAA+TGG | - | chr5.4:43559950-43559969 | None:intergenic | 30.0% | |
| TCATTAAGCTCTTCGTTATT+CGG | - | chr5.4:43558547-43558566 | None:intergenic | 30.0% | |
| TCCCTTTCAACAATGTAAAA+AGG | - | chr5.4:43560322-43560341 | None:intergenic | 30.0% | |
| TTATTTGAGTAGCTTAACTG+TGG | + | chr5.4:43559395-43559414 | MS.gene59695:intron | 30.0% | |
| TTGAAAGGGAATTAGTGATT+TGG | + | chr5.4:43560332-43560351 | MS.gene59695:intron | 30.0% | |
| ! | CTCTTTAAAAACGCTCAAAT+CGG | - | chr5.4:43559077-43559096 | None:intergenic | 30.0% |
| ! | GCCTTTTTACATTGTTGAAA+GGG | + | chr5.4:43560318-43560337 | MS.gene59695:intron | 30.0% |
| ! | TCTTTAAAAACGCTCAAATC+GGG | - | chr5.4:43559076-43559095 | None:intergenic | 30.0% |
| ! | TGCCTTTTTACATTGTTGAA+AGG | + | chr5.4:43560317-43560336 | MS.gene59695:intron | 30.0% |
| !! | ATGGTTCTATTTGAGTGTTT+TGG | + | chr5.4:43559652-43559671 | MS.gene59695:intron | 30.0% |
| !! | TTAAATTCTTTGGGATCCTT+AGG | - | chr5.4:43560572-43560591 | None:intergenic | 30.0% |
| !! | TTTTGATTGGAGTTTGTTCA+GGG | + | chr5.4:43558723-43558742 | MS.gene59695:intron | 30.0% |
| !!! | AATTTGAGCGGTTTTAAAAG+AGG | + | chr5.4:43559032-43559051 | MS.gene59695:intron | 30.0% |
| !!! | CTATTTGAGTGTTTTGGTTA+TGG | + | chr5.4:43559658-43559677 | MS.gene59695:intron | 30.0% |
| !!! | TTATTTTAGCGTTTTGATCG+CGG | + | chr5.4:43558843-43558862 | MS.gene59695:intron | 30.0% |
| AAACGCTCAAATAACTGAAC+CGG | - | chr5.4:43559281-43559300 | None:intergenic | 35.0% | |
| AACTGGTACTATCTACAGTT+TGG | + | chr5.4:43559372-43559391 | MS.gene59695:intron | 35.0% | |
| AAGTAACCCTCAAATTTGAG+AGG | + | chr5.4:43559999-43560018 | MS.gene59695:intron | 35.0% | |
| AGTTATTGTTGAAACTGGTG+AGG | + | chr5.4:43560150-43560169 | MS.gene59695:intron | 35.0% | |
| ATTGTTTGAAAGACTGAACC+GGG | - | chr5.4:43559731-43559750 | None:intergenic | 35.0% | |
| CATTATTTACCTGCATTCTC+AGG | - | chr5.4:43560285-43560304 | None:intergenic | 35.0% | |
| CATTGTTTGAAAGACTGAAC+CGG | - | chr5.4:43559732-43559751 | None:intergenic | 35.0% | |
| GAAGCGTAAAAGAATGTTCA+GGG | + | chr5.4:43560517-43560536 | MS.gene59695:CDS | 35.0% | |
| GACTCAACCATATATCAAAC+CGG | - | chr5.4:43559122-43559141 | None:intergenic | 35.0% | |
| GAGAATGCAGGTAAATAATG+TGG | + | chr5.4:43560285-43560304 | MS.gene59695:intron | 35.0% | |
| GATGATTCAACTGATTGAAC+TGG | + | chr5.4:43558810-43558829 | MS.gene59695:intron | 35.0% | |
| GTTATTGTTGAAACTGGTGA+GGG | + | chr5.4:43560151-43560170 | MS.gene59695:intron | 35.0% | |
| TAATTGTGACCTAGATGTTC+CGG | + | chr5.4:43559100-43559119 | MS.gene59695:intron | 35.0% | |
| TATATCAAACCGGAACATCT+AGG | - | chr5.4:43559112-43559131 | None:intergenic | 35.0% | |
| TCACCAGTTTCAACAATAAC+TGG | - | chr5.4:43560151-43560170 | None:intergenic | 35.0% | |
| TGATTTCATCCCAATTTGAG+CGG | + | chr5.4:43559209-43559228 | MS.gene59695:intron | 35.0% | |
| TTCAATCAGTTGAATCATCC+AGG | - | chr5.4:43558809-43558828 | None:intergenic | 35.0% | |
| ! | AGAACAACTATGATAGTGAC+CGG | - | chr5.4:43560608-43560627 | None:intergenic | 35.0% |
| ! | AGATGTTCCGGTTTGATATA+TGG | + | chr5.4:43559112-43559131 | MS.gene59695:intron | 35.0% |
| ! | TAAATGATGGAACTGTGAAC+CGG | + | chr5.4:43559493-43559512 | MS.gene59695:intron | 35.0% |
| ! | TGCTTTAAACCGCTCAAATT+GGG | - | chr5.4:43559427-43559446 | None:intergenic | 35.0% |
| ! | TGTGATTTGGGTAGCAAAAT+AGG | + | chr5.4:43558359-43558378 | MS.gene59695:intron | 35.0% |
| ! | TTGGATAGTCTTGAAAAAGG+CGG | + | chr5.4:43558454-43558473 | MS.gene59695:CDS | 35.0% |
| !! | AGTTATTTGAGCGTTTTGAC+CGG | + | chr5.4:43559285-43559304 | MS.gene59695:intron | 35.0% |
| !! | ATCAAGTTGAACAAGTTACG+TGG | + | chr5.4:43560419-43560438 | MS.gene59695:CDS | 35.0% |
| !! | ATTAAAGATAGTACCGGTTC+AGG | - | chr5.4:43559796-43559815 | None:intergenic | 35.0% |
| !! | CGATTTGAGCGTTTTTAAAG+AGG | + | chr5.4:43559075-43559094 | MS.gene59695:intron | 35.0% |
| !! | GGTTATTTGAGCGTTTTGAT+TGG | + | chr5.4:43558710-43558729 | MS.gene59695:intron | 35.0% |
| !! | TTAAAGATAGTACCGGTTCA+GGG | - | chr5.4:43559795-43559814 | None:intergenic | 35.0% |
| !!! | GTTTTGATTGGAGTTTGTTC+AGG | + | chr5.4:43558722-43558741 | MS.gene59695:intron | 35.0% |
| !!! | TAGGTTTTAAAACACCGAAC+TGG | - | chr5.4:43559475-43559494 | None:intergenic | 35.0% |
| !!! | TGTTTTAGTCCGCTCAAATT+GGG | - | chr5.4:43559221-43559240 | None:intergenic | 35.0% |
| !!! | TTGTTTTAGTCCGCTCAAAT+TGG | - | chr5.4:43559222-43559241 | None:intergenic | 35.0% |
| AAAGCAGTTGAATCATGACC+TGG | + | chr5.4:43558758-43558777 | MS.gene59695:intron | 40.0% | |
| AACAAACCGACAAAACCTCT+TGG | - | chr5.4:43559256-43559275 | None:intergenic | 40.0% | |
| AACCAAAGTGAAGATAGCAC+CGG | - | chr5.4:43559515-43559534 | None:intergenic | 40.0% | |
| AACGCTCAAATAACTGAACC+GGG | - | chr5.4:43559280-43559299 | None:intergenic | 40.0% | |
| AAGTTGAACAAGTTACGTGG+AGG | + | chr5.4:43560422-43560441 | MS.gene59695:CDS | 40.0% | |
| ACAATTGAACCATCTCCAAG+AGG | + | chr5.4:43559238-43559257 | MS.gene59695:intron | 40.0% | |
| ACAGAAGAAGGTTATTGGTG+AGG | + | chr5.4:43558609-43558628 | MS.gene59695:CDS | 40.0% | |
| ATCGAACTAGCAAATCATCC+AGG | - | chr5.4:43558910-43558929 | None:intergenic | 40.0% | |
| CAATTGATTGAACCCTGAAC+CGG | + | chr5.4:43559780-43559799 | MS.gene59695:intron | 40.0% | |
| CGAAGAGCTTAATGAGATGA+AGG | + | chr5.4:43558552-43558571 | MS.gene59695:CDS | 40.0% | |
| GAGGAACAGAAGAAGGTTAT+TGG | + | chr5.4:43558604-43558623 | MS.gene59695:CDS | 40.0% | |
| GGTTCACAGTTCCATCATTT+AGG | - | chr5.4:43559494-43559513 | None:intergenic | 40.0% | |
| TCCAGGTATCCACTCAAATT+GGG | - | chr5.4:43559690-43559709 | None:intergenic | 40.0% | |
| TGATTGTACTCGATGCAGTT+TGG | + | chr5.4:43558689-43558708 | MS.gene59695:intron | 40.0% | |
| TGGTTTCATCCCAATTTGAG+TGG | + | chr5.4:43559678-43559697 | MS.gene59695:intron | 40.0% | |
| TGTCGGAGAAAATAAGTCAG+TGG | + | chr5.4:43560492-43560511 | MS.gene59695:CDS | 40.0% | |
| TTAAACCGCTCAAATTGGGA+CGG | - | chr5.4:43559423-43559442 | None:intergenic | 40.0% | |
| ! | AGAGGTTTGGGTTTGATGTA+TGG | + | chr5.4:43559583-43559602 | MS.gene59695:intron | 40.0% |
| ! | CGTTTTTCGCTCAATTTGAG+CGG | + | chr5.4:43559020-43559039 | MS.gene59695:intron | 40.0% |
| ! | CTGCTTTAAACCGCTCAAAT+TGG | - | chr5.4:43559428-43559447 | None:intergenic | 40.0% |
| ! | GAGTTTGTTCAGGGTTTAAG+GGG | + | chr5.4:43558732-43558751 | MS.gene59695:intron | 40.0% |
| ! | GCGTTGGATAGTCTTGAAAA+AGG | + | chr5.4:43558451-43558470 | MS.gene59695:CDS | 40.0% |
| ! | GGAAGCGTAAAAGAATGTTC+AGG | + | chr5.4:43560516-43560535 | MS.gene59695:CDS | 40.0% |
| ! | GGAGTTTGTTCAGGGTTTAA+GGG | + | chr5.4:43558731-43558750 | MS.gene59695:intron | 40.0% |
| ! | TGATTTGCAAAAGCAGCTTG+AGG | + | chr5.4:43558585-43558604 | MS.gene59695:CDS | 40.0% |
| ! | TGGAGTTTGTTCAGGGTTTA+AGG | + | chr5.4:43558730-43558749 | MS.gene59695:intron | 40.0% |
| ! | TGGATAGTCTTGAAAAAGGC+GGG | + | chr5.4:43558455-43558474 | MS.gene59695:CDS | 40.0% |
| !! | GTTATTTGAGCGTTTTGACC+GGG | + | chr5.4:43559286-43559305 | MS.gene59695:intron | 40.0% |
| !! | TTATTTGAGCGTTTTGACCG+GGG | + | chr5.4:43559287-43559306 | MS.gene59695:intron | 40.0% |
| !! | TTTTGACCGGGGTTTGTTTA+GGG | + | chr5.4:43559298-43559317 | MS.gene59695:intron | 40.0% |
| !! | TTTTGATCGCGGTTTGTTTC+TGG | + | chr5.4:43558854-43558873 | MS.gene59695:intron | 40.0% |
| !!! | GTTTTTAAGGCGAATCATCC+AGG | - | chr5.4:43558779-43558798 | None:intergenic | 40.0% |
| ACCTGAATGATTCGCCAGTT+CGG | + | chr5.4:43559458-43559477 | MS.gene59695:intron | 45.0% | |
| AGAAGTTGACCTGAGAATGC+AGG | + | chr5.4:43560273-43560292 | MS.gene59695:CDS | 45.0% | |
| AGGCGGGAAGATTTCGTTTA+AGG | + | chr5.4:43558471-43558490 | MS.gene59695:CDS | 45.0% | |
| ATCGAACCAACAAAACCTCC+AGG | - | chr5.4:43559707-43559726 | None:intergenic | 45.0% | |
| CAATTTGAGTGGATACCTGG+AGG | + | chr5.4:43559689-43559708 | MS.gene59695:intron | 45.0% | |
| CCAAAATCCGATAACGCTGA+AGG | + | chr5.4:43558115-43558134 | MS.gene59695:CDS | 45.0% | |
| CGGAGAAAATAAGTCAGTGG+AGG | + | chr5.4:43560495-43560514 | MS.gene59695:CDS | 45.0% | |
| CTCCAGGTATCCACTCAAAT+TGG | - | chr5.4:43559691-43559710 | None:intergenic | 45.0% | |
| CTTAGGTGAGTTCTCAGTGA+GGG | - | chr5.4:43560555-43560574 | None:intergenic | 45.0% | |
| GCTGAATACGCAAAATGTGG+CGG | + | chr5.4:43558384-43558403 | MS.gene59695:CDS | 45.0% | |
| GTTATTGGTGAGGTTGAAGC+AGG | + | chr5.4:43558619-43558638 | MS.gene59695:CDS | 45.0% | |
| TCCCAATTTGAGTGGATACC+TGG | + | chr5.4:43559686-43559705 | MS.gene59695:intron | 45.0% | |
| TGAACATTTCAGGAGGAGCT+TGG | + | chr5.4:43560670-43560689 | MS.gene59695:intron | 45.0% | |
| TGATACCGCAAGGTAAGAAG+CGG | + | chr5.4:43560743-43560762 | MS.gene59695:CDS | 45.0% | |
| ! | CCTTCAGCGTTATCGGATTT+TGG | - | chr5.4:43558118-43558137 | None:intergenic | 45.0% |
| ! | GCCACATTTTGCGTATTCAG+CGG | - | chr5.4:43558385-43558404 | None:intergenic | 45.0% |
| ! | GGCAGTTGAGAGTATGTTGT+CGG | + | chr5.4:43560475-43560494 | MS.gene59695:CDS | 45.0% |
| ! | TCTGCTTCAGGTTCAAGAAC+TGG | + | chr5.4:43560394-43560413 | MS.gene59695:intron | 45.0% |
| !! | AACCGGTGCTATCTTCACTT+TGG | + | chr5.4:43559510-43559529 | MS.gene59695:intron | 45.0% |
| !! | CCATCTCCAAGAGGTTTTGT+CGG | + | chr5.4:43559247-43559266 | MS.gene59695:intron | 45.0% |
| !! | CGGTTTGTTTCTGGTTTGAG+GGG | + | chr5.4:43558863-43558882 | MS.gene59695:intron | 45.0% |
| !! | GAGAGTACCTTCAGCGTTAT+CGG | - | chr5.4:43558125-43558144 | None:intergenic | 45.0% |
| !! | GCGGTTTGTTTCTGGTTTGA+GGG | + | chr5.4:43558862-43558881 | MS.gene59695:intron | 45.0% |
| !! | GTTACGTGGAGGTGTTACTT+TGG | + | chr5.4:43560433-43560452 | MS.gene59695:CDS | 45.0% |
| !! | GTTTTGACCGGGGTTTGTTT+AGG | + | chr5.4:43559297-43559316 | MS.gene59695:intron | 45.0% |
| !! | TGGATACCTGGAGGTTTTGT+TGG | + | chr5.4:43559698-43559717 | MS.gene59695:intron | 45.0% |
| ACCGAACTGGCGAATCATTC+AGG | - | chr5.4:43559462-43559481 | None:intergenic | 50.0% | |
| CCGACAAAACCTCTTGGAGA+TGG | - | chr5.4:43559250-43559269 | None:intergenic | 50.0% | |
| CCTCACTGAGAACTCACCTA+AGG | + | chr5.4:43560553-43560572 | MS.gene59695:CDS | 50.0% | |
| CCTTAGGTGAGTTCTCAGTG+AGG | - | chr5.4:43560556-43560575 | None:intergenic | 50.0% | |
| CGTGTTGAACTTCGTCAACG+AGG | + | chr5.4:43558226-43558245 | MS.gene59695:CDS | 50.0% | |
| CTCGAACCCTAAACAAACCC+CGG | - | chr5.4:43559307-43559326 | None:intergenic | 50.0% | |
| GCAGCTTGAGGAACAGAAGA+AGG | + | chr5.4:43558597-43558616 | MS.gene59695:CDS | 50.0% | |
| GCCGCTGAATACGCAAAATG+TGG | + | chr5.4:43558381-43558400 | MS.gene59695:CDS | 50.0% | |
| GCTTCTTACCTTGCGGTATC+AGG | - | chr5.4:43560744-43560763 | None:intergenic | 50.0% | |
| TCAACTGCCACACGTTCTTC+TGG | - | chr5.4:43560464-43560483 | None:intergenic | 50.0% | |
| TGGTTCCGTCCCAATTTGAG+CGG | + | chr5.4:43559415-43559434 | MS.gene59695:intron | 50.0% | |
| TGTTGAAACTGGTGAGGGCT+TGG | + | chr5.4:43560156-43560175 | MS.gene59695:intron | 50.0% | |
| TTCAGTGACCTGATACCGCA+AGG | + | chr5.4:43560733-43560752 | MS.gene59695:CDS | 50.0% | |
| ! | GGGGTTTGTTTAGGGTTCGA+GGG | + | chr5.4:43559306-43559325 | MS.gene59695:intron | 50.0% |
| ! | GGGTTTGTTTAGGGTTCGAG+GGG | + | chr5.4:43559307-43559326 | MS.gene59695:intron | 50.0% |
| !! | CGCGGTTTGTTTCTGGTTTG+AGG | + | chr5.4:43558861-43558880 | MS.gene59695:intron | 50.0% |
| !! | GTGGAGGTGTTACTTTGGTG+AGG | + | chr5.4:43560438-43560457 | MS.gene59695:CDS | 50.0% |
| !!! | GGTTTTGTCGGTTTGTTGCC+CGG | + | chr5.4:43559259-43559278 | MS.gene59695:intron | 50.0% |
| !!! | GGTTTTGTTGGTTCGATGCC+CGG | + | chr5.4:43559710-43559729 | MS.gene59695:intron | 50.0% |
| CAAGGTAAGAAGCGGCCAAG+GGG | + | chr5.4:43560751-43560770 | MS.gene59695:CDS | 55.0% | |
| CTTGGCCGCTTCTTACCTTG+CGG | - | chr5.4:43560751-43560770 | None:intergenic | 55.0% | |
| GCAAGGTAAGAAGCGGCCAA+GGG | + | chr5.4:43560750-43560769 | MS.gene59695:CDS | 55.0% | |
| ! | AGCGGCGATACAGAAAGCGT+TGG | + | chr5.4:43558435-43558454 | MS.gene59695:CDS | 55.0% |
| ! | CGGGGTTTGTTTAGGGTTCG+AGG | + | chr5.4:43559305-43559324 | MS.gene59695:intron | 55.0% |
| CGCAAGGTAAGAAGCGGCCA+AGG | + | chr5.4:43560749-43560768 | MS.gene59695:CDS | 60.0% | |
| GGTGAGGCCAGAAGAACGTG+TGG | + | chr5.4:43560454-43560473 | MS.gene59695:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 43558109 | 43560780 | 43558109 | ID=MS.gene59695 |
| chr5.4 | mRNA | 43558109 | 43560780 | 43558109 | ID=MS.gene59695.t1;Parent=MS.gene59695 |
| chr5.4 | exon | 43558109 | 43558136 | 43558109 | ID=MS.gene59695.t1.exon1;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43558109 | 43558136 | 43558109 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| chr5.4 | exon | 43558222 | 43558247 | 43558222 | ID=MS.gene59695.t1.exon2;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43558222 | 43558247 | 43558222 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| chr5.4 | exon | 43558373 | 43558640 | 43558373 | ID=MS.gene59695.t1.exon3;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43558373 | 43558640 | 43558373 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| chr5.4 | exon | 43560224 | 43560294 | 43560224 | ID=MS.gene59695.t1.exon4;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43560224 | 43560294 | 43560224 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| chr5.4 | exon | 43560404 | 43560592 | 43560404 | ID=MS.gene59695.t1.exon5;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43560404 | 43560592 | 43560404 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| chr5.4 | exon | 43560682 | 43560780 | 43560682 | ID=MS.gene59695.t1.exon6;Parent=MS.gene59695.t1 |
| chr5.4 | CDS | 43560682 | 43560780 | 43560682 | ID=cds.MS.gene59695.t1;Parent=MS.gene59695.t1 |
| Gene Sequence |
| Protein sequence |
