Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66444.t1 | XP_003589097.1 | 90.5 | 623 | 56 | 2 | 1 | 622 | 1 | 621 | 4.50E-289 | 1003.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66444.t1 | Q94AI1 | 42.6 | 573 | 262 | 16 | 89 | 618 | 102 | 650 | 5.9e-88 | 326.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66444.t1 | G7ICE7 | 90.5 | 623 | 56 | 2 | 1 | 622 | 1 | 621 | 3.2e-289 | 1003.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene66444 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene66444 | 0.810757 | 9.84E-51 | -1.69E-46 |
| MS.gene056169 | MS.gene66444 | 0.826023 | 3.41E-54 | -1.69E-46 |
| MS.gene056228 | MS.gene66444 | 0.834235 | 3.37E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene66444 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene66444 | 0.808512 | 2.99E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene66444 | 0.806022 | 1.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66444.t1 | MTR_1g018440 | 95.185 | 623 | 27 | 2 | 1 | 622 | 1 | 621 | 0.0 | 1074 |
| MS.gene66444.t1 | MTR_1g106735 | 46.780 | 528 | 228 | 12 | 115 | 620 | 120 | 616 | 2.09e-121 | 373 |
| MS.gene66444.t1 | MTR_1g106735 | 46.692 | 529 | 228 | 13 | 115 | 620 | 120 | 617 | 1.16e-119 | 369 |
| MS.gene66444.t1 | MTR_4g130490 | 48.315 | 267 | 122 | 2 | 362 | 615 | 347 | 610 | 2.42e-62 | 218 |
| MS.gene66444.t1 | MTR_4g130490 | 48.627 | 255 | 115 | 2 | 362 | 603 | 347 | 598 | 7.53e-59 | 208 |
| MS.gene66444.t1 | MTR_2g028220 | 35.885 | 209 | 134 | 0 | 409 | 617 | 275 | 483 | 3.24e-39 | 151 |
| MS.gene66444.t1 | MTR_4g130490 | 48.404 | 188 | 81 | 2 | 362 | 536 | 347 | 531 | 1.39e-36 | 144 |
| MS.gene66444.t1 | MTR_2g090050 | 27.841 | 352 | 216 | 8 | 300 | 622 | 149 | 491 | 6.05e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66444.t1 | AT1G49890 | 42.402 | 691 | 284 | 24 | 1 | 618 | 1 | 650 | 2.48e-125 | 385 |
| MS.gene66444.t1 | AT3G19570 | 43.077 | 585 | 272 | 15 | 64 | 614 | 84 | 641 | 4.44e-119 | 368 |
| MS.gene66444.t1 | AT3G19570 | 43.286 | 566 | 260 | 15 | 64 | 595 | 84 | 622 | 7.40e-114 | 354 |
| MS.gene66444.t1 | AT3G19570 | 43.575 | 537 | 242 | 15 | 64 | 566 | 84 | 593 | 1.55e-104 | 329 |
| MS.gene66444.t1 | AT3G19570 | 43.575 | 537 | 242 | 15 | 64 | 566 | 84 | 593 | 1.55e-104 | 329 |
| MS.gene66444.t1 | AT4G30710 | 34.426 | 671 | 316 | 23 | 17 | 615 | 4 | 622 | 3.71e-74 | 250 |
| MS.gene66444.t1 | AT4G30710 | 34.426 | 671 | 316 | 23 | 17 | 615 | 4 | 622 | 3.71e-74 | 250 |
| MS.gene66444.t1 | AT4G30710 | 34.426 | 671 | 316 | 23 | 17 | 615 | 4 | 622 | 1.49e-73 | 248 |
| MS.gene66444.t1 | AT4G30710 | 34.394 | 660 | 309 | 23 | 17 | 604 | 4 | 611 | 1.25e-71 | 243 |
| MS.gene66444.t1 | AT5G43160 | 50.890 | 281 | 116 | 6 | 337 | 615 | 1 | 261 | 5.14e-66 | 217 |
| MS.gene66444.t1 | AT5G43160 | 50.890 | 281 | 116 | 6 | 337 | 615 | 1 | 261 | 5.14e-66 | 217 |
| MS.gene66444.t1 | AT2G24070 | 46.388 | 263 | 123 | 4 | 355 | 615 | 340 | 586 | 1.25e-59 | 210 |
| MS.gene66444.t1 | AT2G24070 | 46.388 | 263 | 123 | 4 | 355 | 615 | 340 | 586 | 1.25e-59 | 210 |
| MS.gene66444.t1 | AT2G24070 | 46.388 | 263 | 123 | 4 | 355 | 615 | 340 | 586 | 1.25e-59 | 210 |
| MS.gene66444.t1 | AT4G25190 | 34.031 | 191 | 126 | 0 | 423 | 613 | 198 | 388 | 2.55e-32 | 129 |
| MS.gene66444.t1 | AT4G25190 | 33.854 | 192 | 126 | 1 | 423 | 613 | 198 | 389 | 3.01e-31 | 126 |
| MS.gene66444.t1 | AT2G44190 | 34.188 | 234 | 144 | 3 | 387 | 616 | 238 | 465 | 3.52e-31 | 127 |
| MS.gene66444.t1 | AT3G60000 | 31.220 | 205 | 141 | 0 | 409 | 613 | 237 | 441 | 4.54e-27 | 115 |
| MS.gene66444.t1 | AT3G60000 | 32.203 | 177 | 118 | 1 | 423 | 599 | 251 | 425 | 3.76e-25 | 109 |
| MS.gene66444.t1 | AT2G20815 | 34.054 | 185 | 120 | 2 | 424 | 607 | 280 | 463 | 2.06e-22 | 101 |
| MS.gene66444.t1 | AT2G20815 | 34.054 | 185 | 120 | 2 | 424 | 607 | 203 | 386 | 4.76e-22 | 99.4 |
| MS.gene66444.t1 | AT2G20815 | 33.871 | 186 | 120 | 3 | 424 | 607 | 280 | 464 | 3.43e-21 | 97.8 |
| MS.gene66444.t1 | AT2G20815 | 33.871 | 186 | 120 | 3 | 424 | 607 | 251 | 435 | 4.24e-21 | 97.1 |
| MS.gene66444.t1 | AT5G43155 | 33.449 | 287 | 117 | 16 | 22 | 308 | 18 | 230 | 1.03e-13 | 71.6 |
Find 146 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTTATCCGTTTCGTTTC+AGG | 0.110567 | 1.4:+4756335 | MS.gene66444:CDS |
| CAATTTCATTGCTGACTTCT+AGG | 0.154009 | 1.4:-4759894 | None:intergenic |
| TTTGGAAGATTGGGCTATTC+TGG | 0.179886 | 1.4:+4758490 | MS.gene66444:CDS |
| GTTACTTCTGGTAGTTCTTC+TGG | 0.203202 | 1.4:+4756783 | MS.gene66444:CDS |
| GTCATTGCGGAATTCGTTAT+TGG | 0.251953 | 1.4:+4756653 | MS.gene66444:CDS |
| CAACTGTAACTTTATTCTTT+TGG | 0.255507 | 1.4:-4758008 | None:intergenic |
| AAACAGAAAATTCGATTTCT+AGG | 0.267547 | 1.4:+4756508 | MS.gene66444:CDS |
| TTGAGAAATTCGAATGGATT+TGG | 0.285233 | 1.4:+4756615 | MS.gene66444:CDS |
| TCTTCGAGAAACGGTGGAAT+TGG | 0.307770 | 1.4:+4756894 | MS.gene66444:CDS |
| AGGATCATACTTGCTCATTC+AGG | 0.314619 | 1.4:-4758060 | None:intergenic |
| CATTGAGACTCCTACATAAC+AGG | 0.331265 | 1.4:+4757234 | MS.gene66444:CDS |
| AACAGTTCCTCCGAAGCTTT+TGG | 0.334062 | 1.4:+4756926 | MS.gene66444:CDS |
| TCTTCTGGAGTACAGGAGTT+TGG | 0.345008 | 1.4:+4756798 | MS.gene66444:CDS |
| TTGTATCAGAAAAGCCTCTA+TGG | 0.346941 | 1.4:+4757944 | MS.gene66444:intron |
| TTATCAGAAGGAACAAGTTC+AGG | 0.354897 | 1.4:-4756753 | None:intergenic |
| TTTGTATACTATGCGATATC+AGG | 0.356364 | 1.4:-4759860 | None:intergenic |
| ACTCTTCCTCTTCCAATTGT+CGG | 0.357125 | 1.4:-4756468 | None:intergenic |
| AGATGATCTATTTGGAAGAT+TGG | 0.359337 | 1.4:+4758480 | MS.gene66444:intron |
| GATAATGAAAGTGTTACTTC+TGG | 0.379947 | 1.4:+4756771 | MS.gene66444:CDS |
| GAAGTAACTTCTCGTGCTTT+CGG | 0.386297 | 1.4:-4756069 | None:intergenic |
| GATGATCTATTTGGAAGATT+GGG | 0.390025 | 1.4:+4758481 | MS.gene66444:intron |
| GCCTCTTGCAAGAACCTTGC+CGG | 0.390843 | 1.4:-4756861 | None:intergenic |
| ACGGTTACAACACCGACAAT+TGG | 0.406091 | 1.4:+4756456 | MS.gene66444:CDS |
| AGCTCGAGCGATTGTTGTTC+CGG | 0.406484 | 1.4:+4756842 | MS.gene66444:CDS |
| GATGGCATCCCTAGCTTACT+TGG | 0.408280 | 1.4:-4757053 | None:intergenic |
| CTCTGCACCGTCGCTGGCGG+CGG | 0.409488 | 1.4:-4756393 | None:intergenic |
| GTCAATTATTAGAACTATGC+AGG | 0.417605 | 1.4:+4759695 | MS.gene66444:CDS |
| CTCAAACTCTGCACCGTCGC+TGG | 0.421458 | 1.4:-4756399 | None:intergenic |
| TAATAATTGACAAAAGATCT+TGG | 0.427756 | 1.4:-4759683 | None:intergenic |
| ACCGTTGTTACCTTCTGAAT+CGG | 0.428192 | 1.4:+4756026 | MS.gene66444:CDS |
| CTCAGTCGACGGAGCGGCAG+AGG | 0.428799 | 1.4:+4756241 | MS.gene66444:CDS |
| GTGTACTCTGGTTCCCTCTC+AGG | 0.430024 | 1.4:+4758518 | MS.gene66444:CDS |
| AGTTTATCCGTTTCGTTTCA+GGG | 0.440821 | 1.4:+4756336 | MS.gene66444:CDS |
| GGCGGTTTCGCTTTACTCAC+CGG | 0.446470 | 1.4:-4756375 | None:intergenic |
| GTTGTGATTTCGCCGGCCAC+CGG | 0.446740 | 1.4:-4756545 | None:intergenic |
| TGGTAGTTCTTCTGGAGTAC+AGG | 0.453379 | 1.4:+4756791 | MS.gene66444:CDS |
| GGACGAACTGCAGAACGAAT+TGG | 0.453439 | 1.4:-4757023 | None:intergenic |
| CTTCGGTAACAGTAGGCATA+TGG | 0.462002 | 1.4:-4758802 | None:intergenic |
| CAAGGTACTCCTCGGCCTAA+TGG | 0.468202 | 1.4:+4756270 | MS.gene66444:CDS |
| CAGCGACGGTGCAGAGTTTG+AGG | 0.469732 | 1.4:+4756400 | MS.gene66444:CDS |
| GAAAAGCCTCTATGGTGCTT+GGG | 0.470233 | 1.4:+4757952 | MS.gene66444:intron |
| GATAGATCTACTGAATTTGA+AGG | 0.470240 | 1.4:+4758734 | MS.gene66444:intron |
| AGGAGCGACCGAAGCGCTAA+AGG | 0.473671 | 1.4:+4758538 | MS.gene66444:CDS |
| AGAAAAGCCTCTATGGTGCT+TGG | 0.475511 | 1.4:+4757951 | MS.gene66444:intron |
| CCTGCTTCTCCAAGTAAGCT+AGG | 0.476087 | 1.4:+4757044 | MS.gene66444:CDS |
| GCCGGAACCTTCCTCCTCTC+CGG | 0.476363 | 1.4:-4756432 | None:intergenic |
| GGTGCTGGCCTTTAGCGCTT+CGG | 0.477110 | 1.4:-4758546 | None:intergenic |
| TTCAGCAATGGATGTGATGC+AGG | 0.485132 | 1.4:+4758767 | MS.gene66444:CDS |
| TCTGGAGTACAGGAGTTTGG+AGG | 0.486148 | 1.4:+4756801 | MS.gene66444:CDS |
| AACAGGAAGACGTAGGGTGC+TGG | 0.490737 | 1.4:-4758561 | None:intergenic |
| GATTTGGAAGCAATGTGGTT+AGG | 0.494423 | 1.4:+4756631 | MS.gene66444:CDS |
| TCAGAAAATGTTGTTTACTT+CGG | 0.495807 | 1.4:+4756308 | MS.gene66444:CDS |
| GCAACCGGAGTCTCACCATT+AGG | 0.495895 | 1.4:-4756285 | None:intergenic |
| AAGGACTCACACCGCGCGAA+GGG | 0.498493 | 1.4:-4757085 | None:intergenic |
| CGACGGAGCGGCAGAGGCAA+CGG | 0.498632 | 1.4:+4756247 | MS.gene66444:CDS |
| AGATTGGGCTATTCTGGATC+GGG | 0.500099 | 1.4:+4758496 | MS.gene66444:CDS |
| ACCGGAGAGGAGGAAGGTTC+CGG | 0.504389 | 1.4:+4756431 | MS.gene66444:CDS |
| AAGATTGGGCTATTCTGGAT+CGG | 0.505653 | 1.4:+4758495 | MS.gene66444:CDS |
| CAAGGACTCACACCGCGCGA+AGG | 0.509047 | 1.4:-4757086 | None:intergenic |
| TAGCAACACCGTTTCTTCCA+CGG | 0.514313 | 1.4:-4757109 | None:intergenic |
| AGTGGATCAGCACCGGTGGC+CGG | 0.514774 | 1.4:+4756533 | MS.gene66444:CDS |
| CGCTTCGGTCGCTCCTGAGA+GGG | 0.515117 | 1.4:-4758531 | None:intergenic |
| ATTCTGGATCGGGTGTACTC+TGG | 0.516487 | 1.4:+4758506 | MS.gene66444:CDS |
| CCTAGCTTACTTGGAGAAGC+AGG | 0.524697 | 1.4:-4757044 | None:intergenic |
| GGAGTACAGGAGTTTGGAGG+TGG | 0.529886 | 1.4:+4756804 | MS.gene66444:CDS |
| AGCGAAACCGCCGCCAGCGA+CGG | 0.529951 | 1.4:+4756386 | MS.gene66444:CDS |
| GAGCGATTGTTGTTCCGGCA+AGG | 0.530118 | 1.4:+4756847 | MS.gene66444:CDS |
| CGCGAAGGGGACCTCGGTGA+TGG | 0.530379 | 1.4:-4757071 | None:intergenic |
| GGAGGCTATTTGTTCAGCAA+TGG | 0.537402 | 1.4:+4758755 | MS.gene66444:CDS |
| ACTAATCCGTCTTCGAGAAA+CGG | 0.538884 | 1.4:+4756885 | MS.gene66444:CDS |
| AATTCAGTGTCTGCACAGAA+AGG | 0.541182 | 1.4:-4757298 | None:intergenic |
| GAGGAGGAAGGTTCCGGCGA+CGG | 0.543889 | 1.4:+4756437 | MS.gene66444:CDS |
| GAATTTCATGAATAGAAGCT+TGG | 0.545802 | 1.4:+4756578 | MS.gene66444:CDS |
| GGTTGTAAATGTAAAGTCAC+TGG | 0.546346 | 1.4:+4759608 | MS.gene66444:intron |
| GTCGGTGTTGTAACCGTCGC+CGG | 0.547586 | 1.4:-4756450 | None:intergenic |
| ATTCAGTGTCTGCACAGAAA+GGG | 0.550651 | 1.4:-4757297 | None:intergenic |
| ATTGCATAAGCCTGTTATGT+AGG | 0.553385 | 1.4:-4757244 | None:intergenic |
| ATTCCTCGTGGAGACGATGC+AGG | 0.554378 | 1.4:-4756975 | None:intergenic |
| GGTAACAACGGTGGCCTCGT+TGG | 0.555549 | 1.4:-4756015 | None:intergenic |
| CGATTCTCCCTGAAACGAAA+CGG | 0.558328 | 1.4:-4756343 | None:intergenic |
| ATTCCACCGTTTCTCGAAGA+CGG | 0.561802 | 1.4:-4756891 | None:intergenic |
| ACCGACGGCGTAACTGTCAC+CGG | 0.564809 | 1.4:-4756210 | None:intergenic |
| TCCGGCAAGGTTCTTGCAAG+AGG | 0.568553 | 1.4:+4756860 | MS.gene66444:CDS |
| TGATTCTGTTGTGATTTCGC+CGG | 0.570077 | 1.4:-4756552 | None:intergenic |
| GCGCTTCGGTCGCTCCTGAG+AGG | 0.572968 | 1.4:-4758532 | None:intergenic |
| TATATACCTTCGGTAACAGT+AGG | 0.574204 | 1.4:-4758809 | None:intergenic |
| CTGCTTCTCCAAGTAAGCTA+GGG | 0.575742 | 1.4:+4757045 | MS.gene66444:CDS |
| CGCGGTGTGAGTCCTTGCCG+TGG | 0.577170 | 1.4:+4757092 | MS.gene66444:CDS |
| TTCGGCACCAAAAGCTTCGG+AGG | 0.579043 | 1.4:-4756933 | None:intergenic |
| GAAAAGAACTAACTCGCCAT+TGG | 0.584363 | 1.4:+4756146 | MS.gene66444:CDS |
| AGTCCTTGCCGTGGAAGAAA+CGG | 0.584401 | 1.4:+4757101 | MS.gene66444:CDS |
| GACTGAGATCGTTTCACCGA+CGG | 0.589591 | 1.4:-4756225 | None:intergenic |
| GTAACACTTTCATTATCAGA+AGG | 0.591803 | 1.4:-4756765 | None:intergenic |
| GGAAAAGTACACCGGAGAGG+AGG | 0.592441 | 1.4:+4756421 | MS.gene66444:CDS |
| TACATAACAGGCTTATGCAA+TGG | 0.595217 | 1.4:+4757246 | MS.gene66444:CDS |
| TAGGCATATGGAGGATGCCA+TGG | 0.595245 | 1.4:-4758790 | None:intergenic |
| TTCACCGTTCTATTCACCAA+TGG | 0.595880 | 1.4:-4756162 | None:intergenic |
| AAATTCGATTTCTAGGTCAG+TGG | 0.597586 | 1.4:+4756515 | MS.gene66444:CDS |
| ATTGCATTGTCCGATTCAGA+AGG | 0.598126 | 1.4:-4756036 | None:intergenic |
| CTAGGTCAGTGGATCAGCAC+CGG | 0.601366 | 1.4:+4756526 | MS.gene66444:CDS |
| AGGACTCACACCGCGCGAAG+GGG | 0.602977 | 1.4:-4757084 | None:intergenic |
| TAGCTACCCAAGCACCATAG+AGG | 0.603348 | 1.4:-4757958 | None:intergenic |
| GGTCAGTGGATCAGCACCGG+TGG | 0.608767 | 1.4:+4756529 | MS.gene66444:CDS |
| AAGTACACCGGAGAGGAGGA+AGG | 0.611409 | 1.4:+4756425 | MS.gene66444:CDS |
| CTCGCCATTGGTGAATAGAA+CGG | 0.612901 | 1.4:+4756158 | MS.gene66444:CDS |
| GGAGTCTCACCATTAGGCCG+AGG | 0.613090 | 1.4:-4756279 | None:intergenic |
| TCGGCCTAATGGTGAGACTC+CGG | 0.614526 | 1.4:+4756281 | MS.gene66444:CDS |
| TCATACTTGCTCATTCAGGA+TGG | 0.615410 | 1.4:-4758056 | None:intergenic |
| GGGGAAAATTGGAGAGAACA+GGG | 0.616709 | 1.4:+4757196 | MS.gene66444:CDS |
| ACACCGTTTCTTCCACGGCA+AGG | 0.617821 | 1.4:-4757104 | None:intergenic |
| AAACTCTGCACCGTCGCTGG+CGG | 0.621343 | 1.4:-4756396 | None:intergenic |
| ACACCGCGCGAAGGGGACCT+CGG | 0.621540 | 1.4:-4757077 | None:intergenic |
| ACAACACCGACAATTGGAAG+AGG | 0.623276 | 1.4:+4756462 | MS.gene66444:CDS |
| ACGGCAAAACTCAAAACAGA+AGG | 0.630720 | 1.4:-4757161 | None:intergenic |
| AATGGATGTGATGCAGGCCA+TGG | 0.630875 | 1.4:+4758773 | MS.gene66444:CDS |
| CGATTATTCAAAATTCCTCG+TGG | 0.631530 | 1.4:-4756987 | None:intergenic |
| ATCGCTCGAGCTGATCGTTG+CGG | 0.631817 | 1.4:-4756831 | None:intergenic |
| GGCAACGGCAAGGTACTCCT+CGG | 0.635107 | 1.4:+4756262 | MS.gene66444:CDS |
| TGTGCAGACACTGAATTCTG+AGG | 0.635950 | 1.4:+4757304 | MS.gene66444:CDS |
| ATTGGAAGAGGAAGAGTGAA+CGG | 0.637041 | 1.4:+4756474 | MS.gene66444:CDS |
| GCCGGTGACAGTTACGCCGT+CGG | 0.640758 | 1.4:+4756209 | MS.gene66444:CDS |
| TCACCGAGGTCCCCTTCGCG+CGG | 0.643495 | 1.4:+4757074 | MS.gene66444:CDS |
| CGGTAACAGTAGGCATATGG+AGG | 0.643850 | 1.4:-4758799 | None:intergenic |
| AGTTGTCAGCATAAGTGCAA+AGG | 0.647548 | 1.4:+4759638 | MS.gene66444:CDS |
| AGATCTACTGAATTTGAAGG+AGG | 0.651994 | 1.4:+4758737 | MS.gene66444:CDS |
| GAGCGGCAGAGGCAACGGCA+AGG | 0.654833 | 1.4:+4756252 | MS.gene66444:CDS |
| ATGAATAGAAGCTTGGATTG+TGG | 0.664306 | 1.4:+4756585 | MS.gene66444:CDS |
| GAGTTTGAGGAAAAGTACAC+CGG | 0.667037 | 1.4:+4756413 | MS.gene66444:CDS |
| CATATGCCTACTGTTACCGA+AGG | 0.667961 | 1.4:+4758803 | MS.gene66444:CDS |
| AACGATCTCAGTCGACGGAG+CGG | 0.670815 | 1.4:+4756235 | MS.gene66444:CDS |
| GCAATGTGGTTAGGTCATTG+CGG | 0.674795 | 1.4:+4756640 | MS.gene66444:CDS |
| AAATGTTGTTTACTTCGGCG+AGG | 0.676953 | 1.4:+4756313 | MS.gene66444:CDS |
| GATCCTCGAGTTTCTCACGA+TGG | 0.678747 | 1.4:+4756675 | MS.gene66444:CDS |
| GGTGAAACGATCTCAGTCGA+CGG | 0.679372 | 1.4:+4756230 | MS.gene66444:CDS |
| TCCGATTCAGAAGGTAACAA+CGG | 0.679861 | 1.4:-4756027 | None:intergenic |
| GAATGGATTTGGAAGCAATG+TGG | 0.680388 | 1.4:+4756626 | MS.gene66444:CDS |
| AATCCGTCTTCGAGAAACGG+TGG | 0.680618 | 1.4:+4756888 | MS.gene66444:CDS |
| TGAGGAAAAGTACACCGGAG+AGG | 0.704881 | 1.4:+4756418 | MS.gene66444:CDS |
| GCACCATCGTGAGAAACTCG+AGG | 0.706819 | 1.4:-4756678 | None:intergenic |
| TTGCCGTTGATGTTCCAAGG+GGG | 0.732369 | 1.4:+4757177 | MS.gene66444:CDS |
| AGTCCTGCATCGTCTCCACG+AGG | 0.738290 | 1.4:+4756972 | MS.gene66444:CDS |
| TTTGCCGTTGATGTTCCAAG+GGG | 0.738628 | 1.4:+4757176 | MS.gene66444:CDS |
| GAGACAGAAATTGACGACGC+CGG | 0.740637 | 1.4:+4756191 | MS.gene66444:CDS |
| AGCTAGGGATGCCATCACCG+AGG | 0.744783 | 1.4:+4757060 | MS.gene66444:CDS |
| GATTCAGAAGGTAACAACGG+TGG | 0.747196 | 1.4:-4756024 | None:intergenic |
| AGAGAGCATCAACACCAACG+AGG | 0.758781 | 1.4:+4756001 | MS.gene66444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTACATATTTTCATTTTA+TGG | + | chr1.4:4759518-4759537 | MS.gene66444:intron | 10.0% |
| !!! | TTTATTTATTTTTTGCTATT+TGG | + | chr1.4:4757505-4757524 | MS.gene66444:intron | 10.0% |
| !! | AAAAAAAATCAAGAAGATTA+CGG | - | chr1.4:4759479-4759498 | None:intergenic | 15.0% |
| !!! | TCTTTTTCAAATTTCAAATT+TGG | + | chr1.4:4757334-4757353 | MS.gene66444:intron | 15.0% |
| !!! | TTGATAAAATTCGTTTTTAT+TGG | + | chr1.4:4759820-4759839 | MS.gene66444:intron | 15.0% |
| !! | AAATAATGTCAACAATATCA+AGG | - | chr1.4:4757678-4757697 | None:intergenic | 20.0% |
| !! | TAAGAAATAAAGCAATAAAC+AGG | - | chr1.4:4758620-4758639 | None:intergenic | 20.0% |
| !! | TAAGTTATCAAACAAATCAT+TGG | + | chr1.4:4759222-4759241 | MS.gene66444:intron | 20.0% |
| !! | TAATAATTGACAAAAGATCT+TGG | - | chr1.4:4759686-4759705 | None:intergenic | 20.0% |
| !! | TGATACAAGAAAGAATAATT+AGG | - | chr1.4:4757932-4757951 | None:intergenic | 20.0% |
| !! | TTACATTTACAACCTATAAA+TGG | - | chr1.4:4759602-4759621 | None:intergenic | 20.0% |
| !! | TTATGCTATTAATATTCTAC+TGG | + | chr1.4:4757546-4757565 | MS.gene66444:intron | 20.0% |
| !!! | AGTTTTAATGGTTCATATAT+AGG | + | chr1.4:4759034-4759053 | MS.gene66444:intron | 20.0% |
| !!! | ATGTTTTGTTTTTTCCATTT+TGG | + | chr1.4:4757867-4757886 | MS.gene66444:intron | 20.0% |
| !!! | GTTGACATTATTTAAAACTT+TGG | + | chr1.4:4757685-4757704 | MS.gene66444:intron | 20.0% |
| !!! | TCTTAAAATATTTTCTGTGA+TGG | - | chr1.4:4759198-4759217 | None:intergenic | 20.0% |
| ! | AAACAGAAAATTCGATTTCT+AGG | + | chr1.4:4756508-4756527 | MS.gene66444:CDS | 25.0% |
| ! | AAGAGAAAAGAAAAATACCT+TGG | - | chr1.4:4758597-4758616 | None:intergenic | 25.0% |
| ! | AGCATGTATGAAAAAAGAAA+AGG | - | chr1.4:4758363-4758382 | None:intergenic | 25.0% |
| ! | CTCAGTCAAAAAGATAAAAA+AGG | - | chr1.4:4757788-4757807 | None:intergenic | 25.0% |
| ! | GTGAAGATCAATTCATATAT+AGG | + | chr1.4:4757820-4757839 | MS.gene66444:intron | 25.0% |
| ! | TACACCACATATTTATTTAG+AGG | + | chr1.4:4759435-4759454 | MS.gene66444:intron | 25.0% |
| ! | TATTAGCTATTAGCATATCT+GGG | + | chr1.4:4758680-4758699 | MS.gene66444:intron | 25.0% |
| ! | TGGCACAAATATCTAAATAA+TGG | - | chr1.4:4758153-4758172 | None:intergenic | 25.0% |
| !! | AAAATATTTTCTGTGATGGT+GGG | - | chr1.4:4759194-4759213 | None:intergenic | 25.0% |
| !! | AGGATAGTATGTATACATTT+TGG | - | chr1.4:4758343-4758362 | None:intergenic | 25.0% |
| !! | ATTTAAAACTTTGGCTGTAT+TGG | + | chr1.4:4757694-4757713 | MS.gene66444:intron | 25.0% |
| !! | CAACTGTAACTTTATTCTTT+TGG | - | chr1.4:4758011-4758030 | None:intergenic | 25.0% |
| !! | TAAAATATTTTCTGTGATGG+TGG | - | chr1.4:4759195-4759214 | None:intergenic | 25.0% |
| !! | TCAGAAAATGTTGTTTACTT+CGG | + | chr1.4:4756308-4756327 | MS.gene66444:CDS | 25.0% |
| !! | TTTAAAACTTTGGCTGTATT+GGG | + | chr1.4:4757695-4757714 | MS.gene66444:intron | 25.0% |
| !! | TTTTACTCAGATGATCTATT+TGG | + | chr1.4:4758472-4758491 | MS.gene66444:intron | 25.0% |
| !!! | ACTCTTTGAAGTTGTATTTA+AGG | + | chr1.4:4757579-4757598 | MS.gene66444:intron | 25.0% |
| !!! | ATGCAGGTAAGTTTTATATT+CGG | + | chr1.4:4759711-4759730 | MS.gene66444:intron | 25.0% |
| !!! | TAAAAGCACAGAAGTTTTAA+TGG | + | chr1.4:4759022-4759041 | MS.gene66444:intron | 25.0% |
| !!! | TAAAATTCGTTTTTATTGGC+AGG | + | chr1.4:4759824-4759843 | MS.gene66444:intron | 25.0% |
| AATCATTGGTGTGATACAAA+AGG | + | chr1.4:4759236-4759255 | MS.gene66444:intron | 30.0% | |
| ACCACATATTTATTTAGAGG+TGG | + | chr1.4:4759438-4759457 | MS.gene66444:intron | 30.0% | |
| ACCACCTCTAAATAAATATG+TGG | - | chr1.4:4759442-4759461 | None:intergenic | 30.0% | |
| AGAAATGTTCTCTGCTAAAA+TGG | - | chr1.4:4757482-4757501 | None:intergenic | 30.0% | |
| AGATCAGAAAGCAACAAAAA+TGG | + | chr1.4:4756708-4756727 | MS.gene66444:CDS | 30.0% | |
| AGATGATCTATTTGGAAGAT+TGG | + | chr1.4:4758480-4758499 | MS.gene66444:intron | 30.0% | |
| AGCTGTGTTAAGTATAGTTT+CGG | - | chr1.4:4759370-4759389 | None:intergenic | 30.0% | |
| ATTAGCTATTAGCATATCTG+GGG | + | chr1.4:4758681-4758700 | MS.gene66444:intron | 30.0% | |
| CTATTAGCTATTAGCATATC+TGG | + | chr1.4:4758679-4758698 | MS.gene66444:intron | 30.0% | |
| GAATTTCATGAATAGAAGCT+TGG | + | chr1.4:4756578-4756597 | MS.gene66444:CDS | 30.0% | |
| GATAGATCTACTGAATTTGA+AGG | + | chr1.4:4758734-4758753 | MS.gene66444:intron | 30.0% | |
| GATGATCTATTTGGAAGATT+GGG | + | chr1.4:4758481-4758500 | MS.gene66444:intron | 30.0% | |
| GCAAAAGGATTATATACCTT+CGG | - | chr1.4:4758822-4758841 | None:intergenic | 30.0% | |
| GTAACACTTTCATTATCAGA+AGG | - | chr1.4:4756768-4756787 | None:intergenic | 30.0% | |
| GTACTTGTCTTGAATTTCAT+TGG | + | chr1.4:4759757-4759776 | MS.gene66444:intron | 30.0% | |
| GTCAATTATTAGAACTATGC+AGG | + | chr1.4:4759695-4759714 | MS.gene66444:CDS | 30.0% | |
| TGTCCATTTGTATCATTACT+GGG | + | chr1.4:4758238-4758257 | MS.gene66444:intron | 30.0% | |
| TTATATTTGTGACGAAGTGA+TGG | + | chr1.4:4758872-4758891 | MS.gene66444:intron | 30.0% | |
| TTCAAAGACTATTGAAAAGC+TGG | - | chr1.4:4758918-4758937 | None:intergenic | 30.0% | |
| TTCATTGGATGATATTGTTG+TGG | + | chr1.4:4759772-4759791 | MS.gene66444:intron | 30.0% | |
| TTGTCCATTTGTATCATTAC+TGG | + | chr1.4:4758237-4758256 | MS.gene66444:intron | 30.0% | |
| TTTACTTGCAGTTGTAGATA+AGG | + | chr1.4:4758390-4758409 | MS.gene66444:intron | 30.0% | |
| TTTATGGATAACCAGCATTT+GGG | + | chr1.4:4759534-4759553 | MS.gene66444:intron | 30.0% | |
| TTTGTATACTATGCGATATC+AGG | - | chr1.4:4759863-4759882 | None:intergenic | 30.0% | |
| ! | ATTTTGAATAATCGGTTGCA+AGG | + | chr1.4:4756996-4757015 | MS.gene66444:CDS | 30.0% |
| ! | CACGAGGAATTTTGAATAAT+CGG | + | chr1.4:4756988-4757007 | MS.gene66444:CDS | 30.0% |
| ! | TTGAGAAATTCGAATGGATT+TGG | + | chr1.4:4756615-4756634 | MS.gene66444:CDS | 30.0% |
| ! | TTTTATGGATAACCAGCATT+TGG | + | chr1.4:4759533-4759552 | MS.gene66444:intron | 30.0% |
| !! | GATAATGAAAGTGTTACTTC+TGG | + | chr1.4:4756771-4756790 | MS.gene66444:CDS | 30.0% |
| !! | GTTTTGTTGAGAAATTCGAA+TGG | + | chr1.4:4756609-4756628 | MS.gene66444:CDS | 30.0% |
| !! | TGAAAGCATTCTCCATTTAT+AGG | + | chr1.4:4759587-4759606 | MS.gene66444:intron | 30.0% |
| !! | TGCAGGTAAGTTTTATATTC+GGG | + | chr1.4:4759712-4759731 | MS.gene66444:intron | 30.0% |
| !!! | CTATCGAACACTGATTTTTT+CGG | - | chr1.4:4756954-4756973 | None:intergenic | 30.0% |
| !!! | GCTTTTATTTTCTGTTTGCT+TGG | - | chr1.4:4759009-4759028 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCATACATGCTTG+AGG | + | chr1.4:4758365-4758384 | MS.gene66444:intron | 30.0% |
| !!! | TTTTTTCCATTTTGGTTGTC+TGG | + | chr1.4:4757875-4757894 | MS.gene66444:intron | 30.0% |
| AAATTCAGCACATGTAGCTA+AGG | - | chr1.4:4758083-4758102 | None:intergenic | 35.0% | |
| AACAATCATTCCATGGCATT+TGG | + | chr1.4:4758191-4758210 | MS.gene66444:intron | 35.0% | |
| AATTGCTAAATCCCAAATGC+TGG | - | chr1.4:4759548-4759567 | None:intergenic | 35.0% | |
| AGATCTACTGAATTTGAAGG+AGG | + | chr1.4:4758737-4758756 | MS.gene66444:CDS | 35.0% | |
| AGTTGTAGATAAGGTGGATA+TGG | + | chr1.4:4758399-4758418 | MS.gene66444:intron | 35.0% | |
| AGTTTATCCGTTTCGTTTCA+GGG | + | chr1.4:4756336-4756355 | MS.gene66444:CDS | 35.0% | |
| ATAGAGCAACAATCATTCCA+TGG | + | chr1.4:4758184-4758203 | MS.gene66444:intron | 35.0% | |
| ATGAATAGAAGCTTGGATTG+TGG | + | chr1.4:4756585-4756604 | MS.gene66444:CDS | 35.0% | |
| ATTGCATAAGCCTGTTATGT+AGG | - | chr1.4:4757247-4757266 | None:intergenic | 35.0% | |
| CAACATTCATTATGGCAGTA+TGG | - | chr1.4:4758844-4758863 | None:intergenic | 35.0% | |
| CATACTGCCATAATGAATGT+TGG | + | chr1.4:4758842-4758861 | MS.gene66444:intron | 35.0% | |
| CGATTATTCAAAATTCCTCG+TGG | - | chr1.4:4756990-4757009 | None:intergenic | 35.0% | |
| CTATCTGTAGCAAAATACAG+TGG | - | chr1.4:4758719-4758738 | None:intergenic | 35.0% | |
| GAAGACAAGAGAATTTGAAG+TGG | - | chr1.4:4759147-4759166 | None:intergenic | 35.0% | |
| GAATGATTGTTGCTCTATGA+AGG | - | chr1.4:4758182-4758201 | None:intergenic | 35.0% | |
| GGTTGTAAATGTAAAGTCAC+TGG | + | chr1.4:4759608-4759627 | MS.gene66444:intron | 35.0% | |
| TACATAACAGGCTTATGCAA+TGG | + | chr1.4:4757246-4757265 | MS.gene66444:CDS | 35.0% | |
| TATATACCTTCGGTAACAGT+AGG | - | chr1.4:4758812-4758831 | None:intergenic | 35.0% | |
| TCAGAAAGCAACAAAAATGG+TGG | + | chr1.4:4756711-4756730 | MS.gene66444:CDS | 35.0% | |
| TCGAGATCCAACATTCATTA+TGG | - | chr1.4:4758852-4758871 | None:intergenic | 35.0% | |
| TGCAATTCTTAGTAGATGAC+AGG | - | chr1.4:4759268-4759287 | None:intergenic | 35.0% | |
| TGTCAACAATATCAAGGACA+AGG | - | chr1.4:4757672-4757691 | None:intergenic | 35.0% | |
| TTATCAGAAGGAACAAGTTC+AGG | - | chr1.4:4756756-4756775 | None:intergenic | 35.0% | |
| TTGCTCTATGAAGGAGAAAA+TGG | - | chr1.4:4758173-4758192 | None:intergenic | 35.0% | |
| TTGGGATTTCAAACTTAGCA+GGG | + | chr1.4:4759405-4759424 | MS.gene66444:intron | 35.0% | |
| TTGTATCAGAAAAGCCTCTA+TGG | + | chr1.4:4757944-4757963 | MS.gene66444:intron | 35.0% | |
| TTGTGGTAGAAAATCAACTG+AGG | + | chr1.4:4758958-4758977 | MS.gene66444:intron | 35.0% | |
| ! | AAATTCGATTTCTAGGTCAG+TGG | + | chr1.4:4756515-4756534 | MS.gene66444:CDS | 35.0% |
| ! | AACAACATTTTCTGAGCAAC+CGG | - | chr1.4:4756303-4756322 | None:intergenic | 35.0% |
| ! | AGCATTTGGGATTTAGCAAT+TGG | + | chr1.4:4759547-4759566 | MS.gene66444:intron | 35.0% |
| ! | CGGATGAATCTAAAAGCATA+GGG | - | chr1.4:4759350-4759369 | None:intergenic | 35.0% |
| ! | GTGGATTGTATGGATGTTAA+TGG | + | chr1.4:4757432-4757451 | MS.gene66444:intron | 35.0% |
| ! | TCGGATGAATCTAAAAGCAT+AGG | - | chr1.4:4759351-4759370 | None:intergenic | 35.0% |
| ! | TTTGGGATTTCAAACTTAGC+AGG | + | chr1.4:4759404-4759423 | MS.gene66444:intron | 35.0% |
| !! | AATGGCGAGTTAGTTCTTTT+CGG | - | chr1.4:4756147-4756166 | None:intergenic | 35.0% |
| !! | ATTAGCTTTGCTCATTTGTG+CGG | + | chr1.4:4758264-4758283 | MS.gene66444:intron | 35.0% |
| !! | CAATAGTCTTTGAAATTCCC+AGG | + | chr1.4:4758924-4758943 | MS.gene66444:intron | 35.0% |
| AACCAACCAGACAACCAAAA+TGG | - | chr1.4:4757884-4757903 | None:intergenic | 40.0% | |
| AAGATTGGGCTATTCTGGAT+CGG | + | chr1.4:4758495-4758514 | MS.gene66444:CDS | 40.0% | |
| AATTCAGTGTCTGCACAGAA+AGG | - | chr1.4:4757301-4757320 | None:intergenic | 40.0% | |
| ACCAAAAACAGGAAGACGTA+GGG | - | chr1.4:4758570-4758589 | None:intergenic | 40.0% | |
| ACCACAATCATAATCTAGCC+TGG | - | chr1.4:4758945-4758964 | None:intergenic | 40.0% | |
| ACCGTTGTTACCTTCTGAAT+CGG | + | chr1.4:4756026-4756045 | MS.gene66444:CDS | 40.0% | |
| ACGGCAAAACTCAAAACAGA+AGG | - | chr1.4:4757164-4757183 | None:intergenic | 40.0% | |
| ACTAATCCGTCTTCGAGAAA+CGG | + | chr1.4:4756885-4756904 | MS.gene66444:CDS | 40.0% | |
| ACTCTTCCTCTTCCAATTGT+CGG | - | chr1.4:4756471-4756490 | None:intergenic | 40.0% | |
| ACTTGCAGTTGTAGATAAGG+TGG | + | chr1.4:4758393-4758412 | MS.gene66444:intron | 40.0% | |
| AGGATCATACTTGCTCATTC+AGG | - | chr1.4:4758063-4758082 | None:intergenic | 40.0% | |
| AGTTGTCAGCATAAGTGCAA+AGG | + | chr1.4:4759638-4759657 | MS.gene66444:CDS | 40.0% | |
| ATTCAGTGTCTGCACAGAAA+GGG | - | chr1.4:4757300-4757319 | None:intergenic | 40.0% | |
| ATTGCATTGTCCGATTCAGA+AGG | - | chr1.4:4756039-4756058 | None:intergenic | 40.0% | |
| ATTGGAAGAGGAAGAGTGAA+CGG | + | chr1.4:4756474-4756493 | MS.gene66444:CDS | 40.0% | |
| CATTATGGCAGTATGGCAAA+AGG | - | chr1.4:4758837-4758856 | None:intergenic | 40.0% | |
| CATTGAGACTCCTACATAAC+AGG | + | chr1.4:4757234-4757253 | MS.gene66444:CDS | 40.0% | |
| CCACAATCATAATCTAGCCT+GGG | - | chr1.4:4758944-4758963 | None:intergenic | 40.0% | |
| GAAAAGAACTAACTCGCCAT+TGG | + | chr1.4:4756146-4756165 | MS.gene66444:CDS | 40.0% | |
| GAAGTAACTTCTCGTGCTTT+CGG | - | chr1.4:4756072-4756091 | None:intergenic | 40.0% | |
| GAGTTTATCCGTTTCGTTTC+AGG | + | chr1.4:4756335-4756354 | MS.gene66444:CDS | 40.0% | |
| GATTTGGAAGCAATGTGGTT+AGG | + | chr1.4:4756631-4756650 | MS.gene66444:CDS | 40.0% | |
| GTCATTGCGGAATTCGTTAT+TGG | + | chr1.4:4756653-4756672 | MS.gene66444:CDS | 40.0% | |
| GTGCCCAGTAATGATACAAA+TGG | - | chr1.4:4758244-4758263 | None:intergenic | 40.0% | |
| GTTACTTCTGGTAGTTCTTC+TGG | + | chr1.4:4756783-4756802 | MS.gene66444:CDS | 40.0% | |
| GTTCTCTGATAGAGGTTACT+GGG | + | chr1.4:4758291-4758310 | MS.gene66444:intron | 40.0% | |
| TCATACTTGCTCATTCAGGA+TGG | - | chr1.4:4758059-4758078 | None:intergenic | 40.0% | |
| TCCGATTCAGAAGGTAACAA+CGG | - | chr1.4:4756030-4756049 | None:intergenic | 40.0% | |
| TGATTCTGTTGTGATTTCGC+CGG | - | chr1.4:4756555-4756574 | None:intergenic | 40.0% | |
| TGTTCTCTGATAGAGGTTAC+TGG | + | chr1.4:4758290-4758309 | MS.gene66444:intron | 40.0% | |
| TTCACCGTTCTATTCACCAA+TGG | - | chr1.4:4756165-4756184 | None:intergenic | 40.0% | |
| TTGGATGATATTGTTGTGGC+AGG | + | chr1.4:4759776-4759795 | MS.gene66444:intron | 40.0% | |
| TTTGGAAGATTGGGCTATTC+TGG | + | chr1.4:4758490-4758509 | MS.gene66444:CDS | 40.0% | |
| ! | AAATGTTGTTTACTTCGGCG+AGG | + | chr1.4:4756313-4756332 | MS.gene66444:CDS | 40.0% |
| ! | ATTTTGCGTTGAGTTTCGTG+TGG | + | chr1.4:4757413-4757432 | MS.gene66444:intron | 40.0% |
| ! | GAATGGATTTGGAAGCAATG+TGG | + | chr1.4:4756626-4756645 | MS.gene66444:CDS | 40.0% |
| ! | GAGTTTGAGGAAAAGTACAC+CGG | + | chr1.4:4756413-4756432 | MS.gene66444:CDS | 40.0% |
| ! | TGAGTTTCGTGTGGATTGTA+TGG | + | chr1.4:4757422-4757441 | MS.gene66444:intron | 40.0% |
| ! | TTTTGCCGTTGATGTTCCAA+GGG | + | chr1.4:4757175-4757194 | MS.gene66444:CDS | 40.0% |
| !! | TTTTTCGGCACCAAAAGCTT+CGG | - | chr1.4:4756939-4756958 | None:intergenic | 40.0% |
| !!! | TTCCATTTTGGTTGTCTGGT+TGG | + | chr1.4:4757879-4757898 | MS.gene66444:intron | 40.0% |
| ACAACACCGACAATTGGAAG+AGG | + | chr1.4:4756462-4756481 | MS.gene66444:CDS | 45.0% | |
| ACGGTTACAACACCGACAAT+TGG | + | chr1.4:4756456-4756475 | MS.gene66444:CDS | 45.0% | |
| AGAAAAGCCTCTATGGTGCT+TGG | + | chr1.4:4757951-4757970 | MS.gene66444:intron | 45.0% | |
| AGATTGGGCTATTCTGGATC+GGG | + | chr1.4:4758496-4758515 | MS.gene66444:CDS | 45.0% | |
| AGCTTCTCATCGCTGTAGTT+TGG | + | chr1.4:4759386-4759405 | MS.gene66444:intron | 45.0% | |
| ATTCCACCGTTTCTCGAAGA+CGG | - | chr1.4:4756894-4756913 | None:intergenic | 45.0% | |
| CACCAAAAACAGGAAGACGT+AGG | - | chr1.4:4758571-4758590 | None:intergenic | 45.0% | |
| CATATGCCTACTGTTACCGA+AGG | + | chr1.4:4758803-4758822 | MS.gene66444:CDS | 45.0% | |
| CCCAGGCTAGATTATGATTG+TGG | + | chr1.4:4758941-4758960 | MS.gene66444:intron | 45.0% | |
| CGATTCTCCCTGAAACGAAA+CGG | - | chr1.4:4756346-4756365 | None:intergenic | 45.0% | |
| CTACATGAAGCCAAATGCCA+TGG | - | chr1.4:4758204-4758223 | None:intergenic | 45.0% | |
| CTCGCCATTGGTGAATAGAA+CGG | + | chr1.4:4756158-4756177 | MS.gene66444:CDS | 45.0% | |
| CTGCTTCTCCAAGTAAGCTA+GGG | + | chr1.4:4757045-4757064 | MS.gene66444:CDS | 45.0% | |
| CTTCGGTAACAGTAGGCATA+TGG | - | chr1.4:4758805-4758824 | None:intergenic | 45.0% | |
| GAAAAGCCTCTATGGTGCTT+GGG | + | chr1.4:4757952-4757971 | MS.gene66444:intron | 45.0% | |
| GATGTTCCAAGGGGGAAAAT+TGG | + | chr1.4:4757185-4757204 | MS.gene66444:CDS | 45.0% | |
| GATTCAGAAGGTAACAACGG+TGG | - | chr1.4:4756027-4756046 | None:intergenic | 45.0% | |
| GCAATGTGGTTAGGTCATTG+CGG | + | chr1.4:4756640-4756659 | MS.gene66444:CDS | 45.0% | |
| GCTTCTCATCGCTGTAGTTT+GGG | + | chr1.4:4759387-4759406 | MS.gene66444:intron | 45.0% | |
| GGAGGCTATTTGTTCAGCAA+TGG | + | chr1.4:4758755-4758774 | MS.gene66444:CDS | 45.0% | |
| GGGGAAAATTGGAGAGAACA+GGG | + | chr1.4:4757196-4757215 | MS.gene66444:CDS | 45.0% | |
| TAGCAACACCGTTTCTTCCA+CGG | - | chr1.4:4757112-4757131 | None:intergenic | 45.0% | |
| TCTTCGAGAAACGGTGGAAT+TGG | + | chr1.4:4756894-4756913 | MS.gene66444:CDS | 45.0% | |
| TGTGCAGACACTGAATTCTG+AGG | + | chr1.4:4757304-4757323 | MS.gene66444:CDS | 45.0% | |
| TTCAGCAATGGATGTGATGC+AGG | + | chr1.4:4758767-4758786 | MS.gene66444:CDS | 45.0% | |
| TTTCCCCCTTGGAACATCAA+CGG | - | chr1.4:4757183-4757202 | None:intergenic | 45.0% | |
| TTTGCCGTTGATGTTCCAAG+GGG | + | chr1.4:4757176-4757195 | MS.gene66444:CDS | 45.0% | |
| ! | AACAGTTCCTCCGAAGCTTT+TGG | + | chr1.4:4756926-4756945 | MS.gene66444:CDS | 45.0% |
| ! | ACCCTACGTCTTCCTGTTTT+TGG | + | chr1.4:4758566-4758585 | MS.gene66444:CDS | 45.0% |
| ! | GTTTTGCCGTTGATGTTCCA+AGG | + | chr1.4:4757174-4757193 | MS.gene66444:CDS | 45.0% |
| ! | TTCTCTCCAATTTTCCCCCT+TGG | - | chr1.4:4757194-4757213 | None:intergenic | 45.0% |
| !! | CAAAAATGGTGGATCTGAGC+AGG | + | chr1.4:4756722-4756741 | MS.gene66444:CDS | 45.0% |
| !! | TCTTCTGGAGTACAGGAGTT+TGG | + | chr1.4:4756798-4756817 | MS.gene66444:CDS | 45.0% |
| !! | TGGTAGTTCTTCTGGAGTAC+AGG | + | chr1.4:4756791-4756810 | MS.gene66444:CDS | 45.0% |
| !!! | CTACGTCTTCCTGTTTTTGG+TGG | + | chr1.4:4758569-4758588 | MS.gene66444:CDS | 45.0% |
| !!! | GCGGTTTTGTTCTCTGATAG+AGG | + | chr1.4:4758283-4758302 | MS.gene66444:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTATGATT+GGG | + | chr1.4:4759494-4759513 | MS.gene66444:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTATGAT+TGG | + | chr1.4:4759493-4759512 | MS.gene66444:intron | 5.0% |
| AATCCGTCTTCGAGAAACGG+TGG | + | chr1.4:4756888-4756907 | MS.gene66444:CDS | 50.0% | |
| AATGGATGTGATGCAGGCCA+TGG | + | chr1.4:4758773-4758792 | MS.gene66444:CDS | 50.0% | |
| ACCTTGGCACCACCAAAAAC+AGG | - | chr1.4:4758581-4758600 | None:intergenic | 50.0% | |
| AGTCCTTGCCGTGGAAGAAA+CGG | + | chr1.4:4757101-4757120 | MS.gene66444:CDS | 50.0% | |
| ATTCTGGATCGGGTGTACTC+TGG | + | chr1.4:4758506-4758525 | MS.gene66444:CDS | 50.0% | |
| CCTAGCTTACTTGGAGAAGC+AGG | - | chr1.4:4757047-4757066 | None:intergenic | 50.0% | |
| CCTGCTTCTCCAAGTAAGCT+AGG | + | chr1.4:4757044-4757063 | MS.gene66444:CDS | 50.0% | |
| CGGTAACAGTAGGCATATGG+AGG | - | chr1.4:4758802-4758821 | None:intergenic | 50.0% | |
| GACTGAGATCGTTTCACCGA+CGG | - | chr1.4:4756228-4756247 | None:intergenic | 50.0% | |
| GAGACAGAAATTGACGACGC+CGG | + | chr1.4:4756191-4756210 | MS.gene66444:CDS | 50.0% | |
| GATCCTCGAGTTTCTCACGA+TGG | + | chr1.4:4756675-4756694 | MS.gene66444:CDS | 50.0% | |
| GATGGCATCCCTAGCTTACT+TGG | - | chr1.4:4757056-4757075 | None:intergenic | 50.0% | |
| GGACGAACTGCAGAACGAAT+TGG | - | chr1.4:4757026-4757045 | None:intergenic | 50.0% | |
| GGGGGAAAATTGGAGAGAAC+AGG | + | chr1.4:4757195-4757214 | MS.gene66444:CDS | 50.0% | |
| GGTGAAACGATCTCAGTCGA+CGG | + | chr1.4:4756230-4756249 | MS.gene66444:CDS | 50.0% | |
| TAGCTACCCAAGCACCATAG+AGG | - | chr1.4:4757961-4757980 | None:intergenic | 50.0% | |
| TAGGCATATGGAGGATGCCA+TGG | - | chr1.4:4758793-4758812 | None:intergenic | 50.0% | |
| TTGCCGTTGATGTTCCAAGG+GGG | + | chr1.4:4757177-4757196 | MS.gene66444:CDS | 50.0% | |
| ! | AGCTCGAGCGATTGTTGTTC+CGG | + | chr1.4:4756842-4756861 | MS.gene66444:CDS | 50.0% |
| ! | CTTCGTGTTTTTCGTCGTCG+TGG | - | chr1.4:4755983-4756002 | None:intergenic | 50.0% |
| ! | GGGAGAATCGTTTTCGATGC+CGG | + | chr1.4:4756356-4756375 | MS.gene66444:CDS | 50.0% |
| ! | TCTGGAGTACAGGAGTTTGG+AGG | + | chr1.4:4756801-4756820 | MS.gene66444:CDS | 50.0% |
| ! | TGAGGAAAAGTACACCGGAG+AGG | + | chr1.4:4756418-4756437 | MS.gene66444:CDS | 50.0% |
| !! | AGAGAGCATCAACACCAACG+AGG | + | chr1.4:4756001-4756020 | MS.gene66444:CDS | 50.0% |
| !! | GGCGAGTTAGTTCTTTTCGG+CGG | - | chr1.4:4756144-4756163 | None:intergenic | 50.0% |
| !!! | TCCTGTTTTTGGTGGTGCCA+AGG | + | chr1.4:4758577-4758596 | MS.gene66444:CDS | 50.0% |
| AACAGGAAGACGTAGGGTGC+TGG | - | chr1.4:4758564-4758583 | None:intergenic | 55.0% | |
| AACGATCTCAGTCGACGGAG+CGG | + | chr1.4:4756235-4756254 | MS.gene66444:CDS | 55.0% | |
| AAGTACACCGGAGAGGAGGA+AGG | + | chr1.4:4756425-4756444 | MS.gene66444:CDS | 55.0% | |
| ACACCGTTTCTTCCACGGCA+AGG | - | chr1.4:4757107-4757126 | None:intergenic | 55.0% | |
| ATCGCTCGAGCTGATCGTTG+CGG | - | chr1.4:4756834-4756853 | None:intergenic | 55.0% | |
| ATTCCTCGTGGAGACGATGC+AGG | - | chr1.4:4756978-4756997 | None:intergenic | 55.0% | |
| CTAGGTCAGTGGATCAGCAC+CGG | + | chr1.4:4756526-4756545 | MS.gene66444:CDS | 55.0% | |
| GCAACCGGAGTCTCACCATT+AGG | - | chr1.4:4756288-4756307 | None:intergenic | 55.0% | |
| GCACCATCGTGAGAAACTCG+AGG | - | chr1.4:4756681-4756700 | None:intergenic | 55.0% | |
| GCCTCTTGCAAGAACCTTGC+CGG | - | chr1.4:4756864-4756883 | None:intergenic | 55.0% | |
| GGAGTACAGGAGTTTGGAGG+TGG | + | chr1.4:4756804-4756823 | MS.gene66444:CDS | 55.0% | |
| GGCGGTTTCGCTTTACTCAC+CGG | - | chr1.4:4756378-4756397 | None:intergenic | 55.0% | |
| TCCGGCAAGGTTCTTGCAAG+AGG | + | chr1.4:4756860-4756879 | MS.gene66444:CDS | 55.0% | |
| TCGGCCTAATGGTGAGACTC+CGG | + | chr1.4:4756281-4756300 | MS.gene66444:CDS | 55.0% | |
| TTCGGCACCAAAAGCTTCGG+AGG | - | chr1.4:4756936-4756955 | None:intergenic | 55.0% | |
| ! | CAAGGTACTCCTCGGCCTAA+TGG | + | chr1.4:4756270-4756289 | MS.gene66444:CDS | 55.0% |
| ! | GAGCGATTGTTGTTCCGGCA+AGG | + | chr1.4:4756847-4756866 | MS.gene66444:CDS | 55.0% |
| ! | GGAAAAGTACACCGGAGAGG+AGG | + | chr1.4:4756421-4756440 | MS.gene66444:CDS | 55.0% |
| ! | GTGTACTCTGGTTCCCTCTC+AGG | + | chr1.4:4758518-4758537 | MS.gene66444:CDS | 55.0% |
| AAACTCTGCACCGTCGCTGG+CGG | - | chr1.4:4756399-4756418 | None:intergenic | 60.0% | |
| AAGGACTCACACCGCGCGAA+GGG | - | chr1.4:4757088-4757107 | None:intergenic | 60.0% | |
| ACCGACGGCGTAACTGTCAC+CGG | - | chr1.4:4756213-4756232 | None:intergenic | 60.0% | |
| ACCGGAGAGGAGGAAGGTTC+CGG | + | chr1.4:4756431-4756450 | MS.gene66444:CDS | 60.0% | |
| AGCTAGGGATGCCATCACCG+AGG | + | chr1.4:4757060-4757079 | MS.gene66444:CDS | 60.0% | |
| AGTCCTGCATCGTCTCCACG+AGG | + | chr1.4:4756972-4756991 | MS.gene66444:CDS | 60.0% | |
| CAGCGACGGTGCAGAGTTTG+AGG | + | chr1.4:4756400-4756419 | MS.gene66444:CDS | 60.0% | |
| CTCAAACTCTGCACCGTCGC+TGG | - | chr1.4:4756402-4756421 | None:intergenic | 60.0% | |
| GGAGTCTCACCATTAGGCCG+AGG | - | chr1.4:4756282-4756301 | None:intergenic | 60.0% | |
| GGTAACAACGGTGGCCTCGT+TGG | - | chr1.4:4756018-4756037 | None:intergenic | 60.0% | |
| GTTGTGATTTCGCCGGCCAC+CGG | - | chr1.4:4756548-4756567 | None:intergenic | 60.0% | |
| ! | AGGAGCGACCGAAGCGCTAA+AGG | + | chr1.4:4758538-4758557 | MS.gene66444:CDS | 60.0% |
| ! | GGCAACGGCAAGGTACTCCT+CGG | + | chr1.4:4756262-4756281 | MS.gene66444:CDS | 60.0% |
| !! | GGTGCTGGCCTTTAGCGCTT+CGG | - | chr1.4:4758549-4758568 | None:intergenic | 60.0% |
| !! | GTCGGTGTTGTAACCGTCGC+CGG | - | chr1.4:4756453-4756472 | None:intergenic | 60.0% |
| AGGACTCACACCGCGCGAAG+GGG | - | chr1.4:4757087-4757106 | None:intergenic | 65.0% | |
| CAAGGACTCACACCGCGCGA+AGG | - | chr1.4:4757089-4757108 | None:intergenic | 65.0% | |
| CGCTTCGGTCGCTCCTGAGA+GGG | - | chr1.4:4758534-4758553 | None:intergenic | 65.0% | |
| GAGGAGGAAGGTTCCGGCGA+CGG | + | chr1.4:4756437-4756456 | MS.gene66444:CDS | 65.0% | |
| GCCGGAACCTTCCTCCTCTC+CGG | - | chr1.4:4756435-4756454 | None:intergenic | 65.0% | |
| GCCGGTGACAGTTACGCCGT+CGG | + | chr1.4:4756209-4756228 | MS.gene66444:CDS | 65.0% | |
| ! | GGTCAGTGGATCAGCACCGG+TGG | + | chr1.4:4756529-4756548 | MS.gene66444:CDS | 65.0% |
| !! | AGTGGATCAGCACCGGTGGC+CGG | + | chr1.4:4756533-4756552 | MS.gene66444:CDS | 65.0% |
| ACACCGCGCGAAGGGGACCT+CGG | - | chr1.4:4757080-4757099 | None:intergenic | 70.0% | |
| AGCGAAACCGCCGCCAGCGA+CGG | + | chr1.4:4756386-4756405 | MS.gene66444:CDS | 70.0% | |
| CGACGGAGCGGCAGAGGCAA+CGG | + | chr1.4:4756247-4756266 | MS.gene66444:CDS | 70.0% | |
| CGCGAAGGGGACCTCGGTGA+TGG | - | chr1.4:4757074-4757093 | None:intergenic | 70.0% | |
| CGCGGTGTGAGTCCTTGCCG+TGG | + | chr1.4:4757092-4757111 | MS.gene66444:CDS | 70.0% | |
| CTCAGTCGACGGAGCGGCAG+AGG | + | chr1.4:4756241-4756260 | MS.gene66444:CDS | 70.0% | |
| GAGCGGCAGAGGCAACGGCA+AGG | + | chr1.4:4756252-4756271 | MS.gene66444:CDS | 70.0% | |
| GCGCTTCGGTCGCTCCTGAG+AGG | - | chr1.4:4758535-4758554 | None:intergenic | 70.0% | |
| TCACCGAGGTCCCCTTCGCG+CGG | + | chr1.4:4757074-4757093 | MS.gene66444:CDS | 70.0% | |
| CTCTGCACCGTCGCTGGCGG+CGG | - | chr1.4:4756396-4756415 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4755958 | 4759911 | 4755958 | ID=MS.gene66444 |
| chr1.4 | mRNA | 4755958 | 4759911 | 4755958 | ID=MS.gene66444.t1;Parent=MS.gene66444 |
| chr1.4 | exon | 4755958 | 4757325 | 4755958 | ID=MS.gene66444.t1.exon1;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4755958 | 4757325 | 4755958 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| chr1.4 | exon | 4757953 | 4758072 | 4757953 | ID=MS.gene66444.t1.exon2;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4757953 | 4758072 | 4757953 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| chr1.4 | exon | 4758482 | 4758598 | 4758482 | ID=MS.gene66444.t1.exon3;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4758482 | 4758598 | 4758482 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| chr1.4 | exon | 4758735 | 4758824 | 4758735 | ID=MS.gene66444.t1.exon4;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4758735 | 4758824 | 4758735 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| chr1.4 | exon | 4759609 | 4759716 | 4759609 | ID=MS.gene66444.t1.exon5;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4759609 | 4759716 | 4759609 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| chr1.4 | exon | 4759846 | 4759911 | 4759846 | ID=MS.gene66444.t1.exon6;Parent=MS.gene66444.t1 |
| chr1.4 | CDS | 4759846 | 4759911 | 4759846 | ID=cds.MS.gene66444.t1;Parent=MS.gene66444.t1 |
| Gene Sequence |
| Protein sequence |
