Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66760.t1 | XP_003606113.1 | 98.6 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 4.80E-234 | 820.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66760.t1 | Q9ZW88 | 72.3 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 1.1e-173 | 610.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66760.t1 | G7JIE1 | 98.6 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 3.4e-234 | 820.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66760 | MS.gene36809 | PPI |
| MS.gene36764 | MS.gene66760 | PPI |
| MS.gene66760 | MS.gene36943 | PPI |
| MS.gene66760 | MS.gene36807 | PPI |
| MS.gene66760 | MS.gene32300 | PPI |
| MS.gene66760 | MS.gene36810 | PPI |
| MS.gene36804 | MS.gene66760 | PPI |
| MS.gene66760 | MS.gene36942 | PPI |
| MS.gene66760 | MS.gene007794 | PPI |
| MS.gene66760 | MS.gene032379 | PPI |
| MS.gene66760 | MS.gene36763 | PPI |
| MS.gene66760 | MS.gene072244 | PPI |
| MS.gene32305 | MS.gene66760 | PPI |
| MS.gene66760 | MS.gene072231 | PPI |
| MS.gene66760 | MS.gene36752 | PPI |
| MS.gene66760 | MS.gene36743 | PPI |
| MS.gene66760 | MS.gene055754 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66760.t1 | MTR_4g053260 | 98.571 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 0.0 | 849 |
| MS.gene66760.t1 | MTR_1g060040 | 66.587 | 419 | 140 | 0 | 2 | 420 | 1 | 419 | 0.0 | 546 |
| MS.gene66760.t1 | MTR_7g104490 | 63.246 | 419 | 154 | 0 | 2 | 420 | 1 | 419 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66760.t1 | AT1G67190 | 72.315 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 0.0 | 610 |
| MS.gene66760.t1 | AT1G67190 | 72.315 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 0.0 | 610 |
Find 89 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4.3:+46861674 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4.3:-46861600 | MS.gene66760:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.290641 | 4.3:-46861480 | MS.gene66760:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4.3:+46862270 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4.3:+46861319 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4.3:-46861639 | MS.gene66760:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4.3:-46861640 | MS.gene66760:CDS |
| CAGCTTCCTGTTGAAGTGAT+TGG | 0.330061 | 4.3:-46862499 | MS.gene66760:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4.3:+46862079 | None:intergenic |
| TAAGCTGGAAGTACTTGATT+TGG | 0.354707 | 4.3:-46862128 | MS.gene66760:CDS |
| CTTCAAATTTAAAGAGGCTT+AGG | 0.375452 | 4.3:-46861646 | MS.gene66760:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4.3:-46862020 | MS.gene66760:CDS |
| CGGCGTCTGCTGTTATTGCT+TGG | 0.385178 | 4.3:-46862240 | MS.gene66760:CDS |
| TTTACAAGGCTCTTCTCATC+TGG | 0.390921 | 4.3:-46861498 | MS.gene66760:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4.3:-46862167 | MS.gene66760:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4.3:-46862108 | MS.gene66760:CDS |
| TGACTAGCTTCTTGAGAATA+GGG | 0.400290 | 4.3:+46861393 | None:intergenic |
| AGCTTCCTGTTGAAGTGATT+GGG | 0.400824 | 4.3:-46862498 | MS.gene66760:CDS |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.401648 | 4.3:-46862378 | MS.gene66760:CDS |
| GTCGATCCTAAAATTCTTCA+AGG | 0.405823 | 4.3:+46861781 | None:intergenic |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4.3:-46862109 | MS.gene66760:CDS |
| AGAGATGGAGTTCTTCACTA+TGG | 0.408458 | 4.3:-46861521 | MS.gene66760:CDS |
| CAGTTTGGACAAGTTTATAG+TGG | 0.414679 | 4.3:-46861876 | MS.gene66760:CDS |
| AGCTTTGGAGCTTGTAAATC+CGG | 0.420803 | 4.3:-46861975 | MS.gene66760:CDS |
| CGAGATCTTCAAATTTAAAG+AGG | 0.423208 | 4.3:-46861652 | MS.gene66760:CDS |
| TCAGCAACTTCACAATCATT+TGG | 0.423879 | 4.3:-46861697 | MS.gene66760:CDS |
| TGATGATGAGGATGAGGTTG+TGG | 0.427773 | 4.3:-46861606 | MS.gene66760:CDS |
| ATGTTCCCAATCACTTCAAC+AGG | 0.428833 | 4.3:+46862493 | None:intergenic |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4.3:-46861990 | MS.gene66760:CDS |
| TAAGCAGCCCCTCGACCCAC+TGG | 0.433128 | 4.3:+46861423 | None:intergenic |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4.3:-46862156 | MS.gene66760:CDS |
| CCTCGGCAACATGCAAGAAA+TGG | 0.450786 | 4.3:-46862432 | MS.gene66760:CDS |
| ATGACTAGCTTCTTGAGAAT+AGG | 0.451924 | 4.3:+46861392 | None:intergenic |
| TTGAAGATCTCGAAATCATC+TGG | 0.455138 | 4.3:+46861663 | None:intergenic |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4.3:+46862163 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4.3:-46862157 | MS.gene66760:CDS |
| CGACCAATCATTCGAGCTAA+AGG | 0.471782 | 4.3:+46862375 | None:intergenic |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4.3:-46861891 | MS.gene66760:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4.3:+46861956 | None:intergenic |
| CTCAAGAAGCTAGTCATTCA+CGG | 0.479475 | 4.3:-46861386 | MS.gene66760:CDS |
| GGATGTGATGTTTGATGATG+AGG | 0.482977 | 4.3:-46861618 | MS.gene66760:CDS |
| CATCCCTTGCAGCCTTGAGA+TGG | 0.484957 | 4.3:+46862464 | None:intergenic |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.497092 | 4.3:+46861986 | None:intergenic |
| GTTCTTCACTATGGTTTACA+AGG | 0.499525 | 4.3:-46861512 | MS.gene66760:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.502995 | 4.3:-46862260 | MS.gene66760:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4.3:-46862143 | MS.gene66760:CDS |
| AAGTTTATAGTGGAGGCTGA+TGG | 0.512230 | 4.3:-46861866 | MS.gene66760:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4.3:-46861372 | MS.gene66760:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4.3:-46862225 | MS.gene66760:CDS |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4.3:-46861321 | MS.gene66760:CDS |
| AGTTTATAGTGGAGGCTGAT+GGG | 0.532800 | 4.3:-46861865 | MS.gene66760:CDS |
| CAATTGCCTCAGAGTCTCCC+TGG | 0.532959 | 4.3:+46862207 | None:intergenic |
| CCATTTCTTGCATGTTGCCG+AGG | 0.538491 | 4.3:+46862432 | None:intergenic |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4.3:+46861310 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4.3:-46861307 | MS.gene66760:CDS |
| ATCCCTTGCAGCCTTGAGAT+GGG | 0.542502 | 4.3:+46862465 | None:intergenic |
| ATCCCATCTCAAGGCTGCAA+GGG | 0.546912 | 4.3:-46862467 | MS.gene66760:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4.3:-46862107 | MS.gene66760:CDS |
| TCTCAAGGCTGCAAGGGATG+TGG | 0.548007 | 4.3:-46862461 | MS.gene66760:CDS |
| CTTTAGCTCGAATGATTGGT+CGG | 0.556087 | 4.3:-46862374 | MS.gene66760:CDS |
| TATCCCATCTCAAGGCTGCA+AGG | 0.556217 | 4.3:-46862468 | MS.gene66760:CDS |
| GATGTTTGATGATGAGGATG+AGG | 0.563175 | 4.3:-46861612 | MS.gene66760:CDS |
| AAGCAGCCCCTCGACCCACT+GGG | 0.569654 | 4.3:+46861424 | None:intergenic |
| TGTGATCAAAATCTCAAGAC+GGG | 0.571900 | 4.3:+46862330 | None:intergenic |
| GGTCGAGAATCTTGAGAGTG+TGG | 0.574858 | 4.3:-46861723 | MS.gene66760:CDS |
| TTCTTCATCAGACTTAGCCT+CGG | 0.578132 | 4.3:+46861355 | None:intergenic |
| TTTGGACAAGTTTATAGTGG+AGG | 0.581640 | 4.3:-46861873 | MS.gene66760:CDS |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4.3:-46862035 | MS.gene66760:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4.3:+46862096 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4.3:-46861536 | MS.gene66760:CDS |
| ACATCTTGACATTGGTGAGA+CGG | 0.597711 | 4.3:-46861744 | MS.gene66760:CDS |
| AAGGGATGTGGTGATAGCCT+CGG | 0.602611 | 4.3:-46862449 | MS.gene66760:CDS |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4.3:+46861304 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4.3:+46861552 | None:intergenic |
| AGTGTTATACATCTTGACAT+TGG | 0.622017 | 4.3:-46861752 | MS.gene66760:CDS |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4.3:-46861951 | MS.gene66760:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4.3:+46862288 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4.3:-46862087 | MS.gene66760:CDS |
| AGAGATAAATGACTCAGGTG+TGG | 0.630363 | 4.3:+46861557 | None:intergenic |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4.3:+46862061 | None:intergenic |
| GTGTGATCAAAATCTCAAGA+CGG | 0.631778 | 4.3:+46862329 | None:intergenic |
| TCGAGCTAAAGGACAATGTG+TGG | 0.633617 | 4.3:+46862386 | None:intergenic |
| ACTCAGGTGTGGAAAACAAG+TGG | 0.646224 | 4.3:+46861568 | None:intergenic |
| GACGGGTCGTTGACAAATCG+CGG | 0.651253 | 4.3:+46862347 | None:intergenic |
| GAACATACTATCCCATCTCA+AGG | 0.653061 | 4.3:-46862476 | MS.gene66760:CDS |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4.3:-46862224 | MS.gene66760:CDS |
| CGTCGAGCTACTCAATTCAA+CGG | 0.669195 | 4.3:+46861925 | None:intergenic |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4.3:-46862213 | MS.gene66760:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4.3:-46862153 | MS.gene66760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | + | chr4.3:46862105-46862124 | None:intergenic | 25.0% |
| AACGAAAGTGATTTCAAACA+CGG | + | chr4.3:46861718-46861737 | None:intergenic | 30.0% | |
| AGTGTTATACATCTTGACAT+TGG | - | chr4.3:46862024-46862043 | MS.gene66760:CDS | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | + | chr4.3:46861616-46861635 | None:intergenic | 30.0% | |
| CGAGATCTTCAAATTTAAAG+AGG | - | chr4.3:46862124-46862143 | MS.gene66760:CDS | 30.0% | |
| CTTCAAATTTAAAGAGGCTT+AGG | - | chr4.3:46862130-46862149 | MS.gene66760:CDS | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | - | chr4.3:46861885-46861904 | MS.gene66760:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | - | chr4.3:46861964-46861983 | MS.gene66760:CDS | 30.0% |
| ! | TTAACATTCTGGAGATTTGT+GGG | - | chr4.3:46861620-46861639 | MS.gene66760:CDS | 30.0% |
| AACTCAGAGATAAATGACTC+AGG | + | chr4.3:46862227-46862246 | None:intergenic | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | + | chr4.3:46861509-46861528 | None:intergenic | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | - | chr4.3:46862136-46862155 | MS.gene66760:CDS | 35.0% | |
| CAGTTTGGACAAGTTTATAG+TGG | - | chr4.3:46861900-46861919 | MS.gene66760:CDS | 35.0% | |
| GTCGATCCTAAAATTCTTCA+AGG | + | chr4.3:46861998-46862017 | None:intergenic | 35.0% | |
| GTGTGATCAAAATCTCAAGA+CGG | + | chr4.3:46861450-46861469 | None:intergenic | 35.0% | |
| GTTCTTCACTATGGTTTACA+AGG | - | chr4.3:46862264-46862283 | MS.gene66760:CDS | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | - | chr4.3:46861609-46861628 | MS.gene66760:CDS | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | - | chr4.3:46862079-46862098 | MS.gene66760:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | - | chr4.3:46861668-46861687 | MS.gene66760:CDS | 35.0% | |
| TGTGATCAAAATCTCAAGAC+GGG | + | chr4.3:46861449-46861468 | None:intergenic | 35.0% | |
| TTGAAGATCTCGAAATCATC+TGG | + | chr4.3:46862116-46862135 | None:intergenic | 35.0% | |
| TTGGAGCATAATTCCATTGT+TGG | - | chr4.3:46861667-46861686 | MS.gene66760:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | - | chr4.3:46861741-46861760 | MS.gene66760:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | - | chr4.3:46862137-46862156 | MS.gene66760:CDS | 35.0% | |
| TTTGGACAAGTTTATAGTGG+AGG | - | chr4.3:46861903-46861922 | MS.gene66760:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | - | chr4.3:46861969-46861988 | MS.gene66760:CDS | 35.0% |
| ! | GTTAACATTCTGGAGATTTG+TGG | - | chr4.3:46861619-46861638 | MS.gene66760:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | - | chr4.3:46861970-46861989 | MS.gene66760:CDS | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | - | chr4.3:46862338-46862357 | MS.gene66760:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | - | chr4.3:46862337-46862356 | MS.gene66760:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | - | chr4.3:46861971-46861990 | MS.gene66760:CDS | 35.0% |
| !! | AGACTATTTTTCAGACATCC+GGG | - | chr4.3:46861470-46861489 | MS.gene66760:CDS | 35.0% |
| !! | ATGACTAGCTTCTTGAGAAT+AGG | + | chr4.3:46862387-46862406 | None:intergenic | 35.0% |
| !! | CAGACTATTTTTCAGACATC+CGG | - | chr4.3:46861469-46861488 | MS.gene66760:CDS | 35.0% |
| !! | TAAGCTGGAAGTACTTGATT+TGG | - | chr4.3:46861648-46861667 | MS.gene66760:CDS | 35.0% |
| !! | TGACTAGCTTCTTGAGAATA+GGG | + | chr4.3:46862386-46862405 | None:intergenic | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | - | chr4.3:46862303-46862322 | MS.gene66760:CDS | 35.0% |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | - | chr4.3:46862296-46862315 | MS.gene66760:CDS | 35.0% |
| AACCATGGATGTGGTGAAAT+TGG | + | chr4.3:46862460-46862479 | None:intergenic | 40.0% | |
| ACATCTTGACATTGGTGAGA+CGG | - | chr4.3:46862032-46862051 | MS.gene66760:CDS | 40.0% | |
| AGAGATAAATGACTCAGGTG+TGG | + | chr4.3:46862222-46862241 | None:intergenic | 40.0% | |
| AGAGATGGAGTTCTTCACTA+TGG | - | chr4.3:46862255-46862274 | MS.gene66760:CDS | 40.0% | |
| AGCTTCCTGTTGAAGTGATT+GGG | - | chr4.3:46861278-46861297 | MS.gene66760:CDS | 40.0% | |
| ATGTTCCCAATCACTTCAAC+AGG | + | chr4.3:46861286-46861305 | None:intergenic | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | + | chr4.3:46861700-46861719 | None:intergenic | 40.0% | |
| CTCAAGAAGCTAGTCATTCA+CGG | - | chr4.3:46862390-46862409 | MS.gene66760:CDS | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | - | chr4.3:46862240-46862259 | MS.gene66760:CDS | 40.0% | |
| GAACATACTATCCCATCTCA+AGG | - | chr4.3:46861300-46861319 | MS.gene66760:CDS | 40.0% | |
| GATTGCAATGTCTGATGCAA+TGG | - | chr4.3:46861825-46861844 | MS.gene66760:CDS | 40.0% | |
| GGAAGATGTCGATGAATTCT+CGG | - | chr4.3:46861516-46861535 | MS.gene66760:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | - | chr4.3:46861669-46861688 | MS.gene66760:CDS | 40.0% | |
| TTCTTCATCAGACTTAGCCT+CGG | + | chr4.3:46862424-46862443 | None:intergenic | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | - | chr4.3:46862278-46862297 | MS.gene66760:CDS | 40.0% | |
| ! | AAGTTTATAGTGGAGGCTGA+TGG | - | chr4.3:46861910-46861929 | MS.gene66760:CDS | 40.0% |
| ! | AGGGGACCTTGAAGAATTTT+AGG | - | chr4.3:46861989-46862008 | MS.gene66760:CDS | 40.0% |
| ! | AGTTTATAGTGGAGGCTGAT+GGG | - | chr4.3:46861911-46861930 | MS.gene66760:CDS | 40.0% |
| ! | CTTTAGCTCGAATGATTGGT+CGG | - | chr4.3:46861402-46861421 | MS.gene66760:CDS | 40.0% |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | - | chr4.3:46861756-46861775 | MS.gene66760:CDS | 40.0% |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | - | chr4.3:46861398-46861417 | MS.gene66760:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTAAATC+CGG | - | chr4.3:46861801-46861820 | MS.gene66760:CDS | 40.0% |
| !! | GATGTTTGATGATGAGGATG+AGG | - | chr4.3:46862164-46862183 | MS.gene66760:CDS | 40.0% |
| !! | GGATGTGATGTTTGATGATG+AGG | - | chr4.3:46862158-46862177 | MS.gene66760:CDS | 40.0% |
| ACTCAGGTGTGGAAAACAAG+TGG | + | chr4.3:46862211-46862230 | None:intergenic | 45.0% | |
| AGCCAATTTCACCACATCCA+TGG | - | chr4.3:46862455-46862474 | MS.gene66760:CDS | 45.0% | |
| AGCTCCAAAGCTTCAATCCT+CGG | + | chr4.3:46861793-46861812 | None:intergenic | 45.0% | |
| CAGCTTCCTGTTGAAGTGAT+TGG | - | chr4.3:46861277-46861296 | MS.gene66760:CDS | 45.0% | |
| CGACCAATCATTCGAGCTAA+AGG | + | chr4.3:46861404-46861423 | None:intergenic | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | + | chr4.3:46861854-46861873 | None:intergenic | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | + | chr4.3:46861823-46861842 | None:intergenic | 45.0% | |
| TCGAGCTAAAGGACAATGTG+TGG | + | chr4.3:46861393-46861412 | None:intergenic | 45.0% | |
| TGAGGATGAGGTTGTGGATT+TGG | - | chr4.3:46862176-46862195 | MS.gene66760:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | - | chr4.3:46861552-46861571 | MS.gene66760:CDS | 45.0% | |
| TTGCTTGGCTTATGTACACC+AGG | - | chr4.3:46861551-46861570 | MS.gene66760:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | - | chr4.3:46861623-46861642 | MS.gene66760:CDS | 45.0% |
| ! | TGATGATGAGGATGAGGTTG+TGG | - | chr4.3:46862170-46862189 | MS.gene66760:CDS | 45.0% |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | - | chr4.3:46861495-46861514 | MS.gene66760:CDS | 45.0% |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | - | chr4.3:46862307-46862326 | MS.gene66760:CDS | 45.0% |
| AAGGGATGTGGTGATAGCCT+CGG | - | chr4.3:46861327-46861346 | MS.gene66760:CDS | 50.0% | |
| AATGGAAAGCGACTGCAACC+CGG | + | chr4.3:46861491-46861510 | None:intergenic | 50.0% | |
| ATCCCATCTCAAGGCTGCAA+GGG | - | chr4.3:46861309-46861328 | MS.gene66760:CDS | 50.0% | |
| ATCCCTTGCAGCCTTGAGAT+GGG | + | chr4.3:46861314-46861333 | None:intergenic | 50.0% | |
| ATTCGGCTCAACCCCAACAA+TGG | + | chr4.3:46861683-46861702 | None:intergenic | 50.0% | |
| CATCAGCTCAACCATGGATG+TGG | + | chr4.3:46862469-46862488 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | - | chr4.3:46862469-46862488 | MS.gene66760:CDS | 50.0% | |
| CCATTTCTTGCATGTTGCCG+AGG | + | chr4.3:46861347-46861366 | None:intergenic | 50.0% | |
| CCTCGGCAACATGCAAGAAA+TGG | - | chr4.3:46861344-46861363 | MS.gene66760:CDS | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | - | chr4.3:46861689-46861708 | MS.gene66760:CDS | 50.0% | |
| GGTCGAGAATCTTGAGAGTG+TGG | - | chr4.3:46862053-46862072 | MS.gene66760:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | - | chr4.3:46861786-46861805 | MS.gene66760:CDS | 50.0% | |
| TATCCCATCTCAAGGCTGCA+AGG | - | chr4.3:46861308-46861327 | MS.gene66760:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | + | chr4.3:46862475-46862494 | None:intergenic | 50.0% | |
| ! | GATTTGTGGGAGGCATAAGC+TGG | - | chr4.3:46861633-46861652 | MS.gene66760:CDS | 50.0% |
| !! | CATTCACGGTGTTGTTTCCG+AGG | - | chr4.3:46862404-46862423 | MS.gene66760:CDS | 50.0% |
| CAATTGCCTCAGAGTCTCCC+TGG | + | chr4.3:46861572-46861591 | None:intergenic | 55.0% | |
| CATCCCTTGCAGCCTTGAGA+TGG | + | chr4.3:46861315-46861334 | None:intergenic | 55.0% | |
| CGGCGTCTGCTGTTATTGCT+TGG | - | chr4.3:46861536-46861555 | MS.gene66760:CDS | 55.0% | |
| GACGGGTCGTTGACAAATCG+CGG | + | chr4.3:46861432-46861451 | None:intergenic | 55.0% | |
| TCTCAAGGCTGCAAGGGATG+TGG | - | chr4.3:46861315-46861334 | MS.gene66760:CDS | 55.0% | |
| TGTACACCAGGGAGACTCTG+AGG | - | chr4.3:46861563-46861582 | MS.gene66760:CDS | 55.0% | |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | - | chr4.3:46862345-46862364 | MS.gene66760:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | - | chr4.3:46862344-46862363 | MS.gene66760:CDS | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | - | chr4.3:46862346-46862365 | MS.gene66760:CDS | 55.0% |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | - | chr4.3:46861773-46861792 | MS.gene66760:CDS | 55.0% |
| AAGCAGCCCCTCGACCCACT+GGG | + | chr4.3:46862355-46862374 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | + | chr4.3:46862356-46862375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46861268 | 46862530 | 46861268 | ID=MS.gene66760 |
| chr4.3 | mRNA | 46861268 | 46862530 | 46861268 | ID=MS.gene66760.t1;Parent=MS.gene66760 |
| chr4.3 | exon | 46861268 | 46862530 | 46861268 | ID=MS.gene66760.t1.exon1;Parent=MS.gene66760.t1 |
| chr4.3 | CDS | 46861268 | 46862530 | 46861268 | ID=cds.MS.gene66760.t1;Parent=MS.gene66760.t1 |
| Gene Sequence |
| Protein sequence |
