AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67081

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67081.t1 MTR_1g021120 97.450 549 14 0 1 549 1 549 0.0 1098
MS.gene67081.t1 MTR_8g086520 57.534 511 217 0 35 545 12 522 0.0 614
MS.gene67081.t1 MTR_3g080390 57.977 514 215 1 33 545 5 518 0.0 607
MS.gene67081.t1 MTR_2g016460 54.314 510 233 0 36 545 13 522 0.0 593
MS.gene67081.t1 MTR_3g078270 51.852 513 245 1 36 546 19 531 0.0 542
MS.gene67081.t1 MTR_4g106750 50.464 539 249 4 12 546 7 531 0.0 538
MS.gene67081.t1 MTR_8g063220 51.076 511 248 1 38 546 22 532 0.0 532
MS.gene67081.t1 MTR_1g106085 51.556 514 243 3 36 546 16 526 0.0 527
MS.gene67081.t1 MTR_8g086520 57.788 443 187 0 35 477 12 454 0.0 527
MS.gene67081.t1 MTR_3g103230 49.231 520 254 4 32 546 39 553 1.81e-177 512
MS.gene67081.t1 MTR_5g035180 48.113 530 267 4 21 546 12 537 6.28e-177 510
MS.gene67081.t1 MTR_4g106750 51.240 484 230 3 67 546 1 482 4.55e-172 496
MS.gene67081.t1 MTR_8g086520 57.855 401 169 0 145 545 6 406 4.59e-172 493
MS.gene67081.t1 MTR_5g022110 49.708 513 249 3 38 546 39 546 1.01e-171 497
MS.gene67081.t1 MTR_8g086520 58.462 390 162 0 35 424 12 401 2.74e-162 468
MS.gene67081.t1 MTR_4g106750 51.226 367 177 1 182 546 13 379 8.95e-131 386
MS.gene67081.t1 MTR_2g084895 35.327 535 304 9 42 540 146 674 1.64e-101 321
MS.gene67081.t1 MTR_8g068550 32.083 533 326 4 42 542 225 753 2.26e-94 304
MS.gene67081.t1 MTR_4g055290 33.395 539 312 8 37 539 148 675 7.12e-93 298
MS.gene67081.t1 MTR_2g103510 34.291 522 297 11 43 547 94 586 2.34e-91 292
MS.gene67081.t1 MTR_5g032020 32.959 534 318 5 42 541 167 694 2.57e-89 290
MS.gene67081.t1 MTR_8g086535 65.000 100 35 0 325 424 18 117 1.23e-35 129
MS.gene67081.t1 MTR_5g042660 53.571 56 26 0 478 533 39 94 9.57e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67081.t1 AT2G26510 69.754 529 159 1 22 549 23 551 0.0 744
MS.gene67081.t1 AT2G34190 55.686 510 226 0 36 545 13 522 0.0 604
MS.gene67081.t1 AT2G05760 56.360 511 222 1 36 545 8 518 0.0 601
MS.gene67081.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene67081.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene67081.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene67081.t1 AT1G60030 49.053 528 264 2 21 546 13 537 0.0 530
MS.gene67081.t1 AT2G26510 70.557 377 111 0 22 398 23 399 0.0 523
MS.gene67081.t1 AT2G26510 70.879 364 106 0 22 385 23 386 2.98e-179 512
MS.gene67081.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene67081.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene67081.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene67081.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene67081.t1 AT1G10540 48.218 533 264 6 21 546 11 538 2.38e-176 509
MS.gene67081.t1 AT1G49960 50.489 511 251 1 38 546 15 525 6.63e-168 486
MS.gene67081.t1 AT1G65550 46.525 518 266 3 38 546 25 540 4.32e-164 478
MS.gene67081.t1 AT5G62890 50.429 466 219 1 12 477 7 460 1.40e-160 466
MS.gene67081.t1 AT1G10540 46.997 383 193 5 21 398 11 388 4.98e-119 357
MS.gene67081.t1 AT5G25420 40.995 422 181 5 38 459 37 390 2.13e-100 310
MS.gene67081.t1 AT2G27810 33.520 537 320 6 41 543 167 700 9.07e-93 299
MS.gene67081.t1 AT2G27810 32.086 561 320 7 41 543 167 724 2.65e-87 285
MS.gene67081.t1 AT4G38050 31.285 537 333 4 43 547 175 707 3.05e-81 268
MS.gene67081.t1 AT2G27810 36.085 424 252 3 41 446 167 589 9.30e-80 261
MS.gene67081.t1 AT2G27810 36.340 377 221 3 41 399 167 542 4.14e-68 229

Find 158 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGCCGCAGCCAGGCTTTC+TGG 0.141398 1.2:+3563721 MS.gene67081:CDS
TTATCTGCATTGCCGTTATT+TGG 0.173804 1.2:+3562774 MS.gene67081:CDS
GGACCACCACCTCAGAATTT+TGG 0.200219 1.2:+3560913 MS.gene67081:CDS
TTCAAGGCTTCCGGTGATTA+TGG 0.205728 1.2:+3561783 MS.gene67081:CDS
ATGTCTATTTCAGGTAAATT+TGG 0.226588 1.2:+3564400 MS.gene67081:intron
GCCGCTATCCTTACCGTTGC+TGG 0.267986 1.2:+3562803 MS.gene67081:CDS
CAGCCGAAGCATCGGGCTTC+AGG 0.280020 1.2:+3563771 MS.gene67081:CDS
TGCAGCTGAAGCATTGCTTT+TGG 0.280132 1.2:+3561433 MS.gene67081:intron
CTATCTCCTGCAGCTGCTAC+TGG 0.282930 1.2:+3564570 MS.gene67081:intron
TTCAAAGCTAGTCATGTCTT+TGG 0.283918 1.2:+3563287 MS.gene67081:CDS
GACATGACTAGCTTTGAATA+TGG 0.296354 1.2:-3563282 None:intergenic
TTCAGACTTGGTTTGGTTCA+AGG 0.300502 1.2:+3561767 MS.gene67081:CDS
AACTTTCGCATCTGAGAATC+AGG 0.310869 1.2:+3561864 MS.gene67081:CDS
TTCGGCTTAACCTTGTTTCT+CGG 0.314131 1.2:+3564645 MS.gene67081:CDS
TCTGTCCACAGCTGTTTGTT+TGG 0.324863 1.2:-3565046 None:intergenic
CAGTATATAGCAGCGAATAT+TGG 0.336373 1.2:-3564448 None:intergenic
TTGGTTTGGTTCAAGGCTTC+CGG 0.345806 1.2:+3561774 MS.gene67081:CDS
TATCTGCATTGCCGTTATTT+GGG 0.347060 1.2:+3562775 MS.gene67081:CDS
TCAAGGCTTCCGGTGATTAT+GGG 0.354222 1.2:+3561784 MS.gene67081:CDS
GCATCCATTCAAATCCTTCA+TGG 0.366156 1.2:+3560992 MS.gene67081:CDS
GAAAACATAGATATTCCTTA+TGG 0.375416 1.2:-3564625 None:intergenic
CAGACATTGTTGTTTATGTC+TGG 0.378631 1.2:+3561730 MS.gene67081:CDS
CATCCACCATTGGTTCTAAC+TGG 0.379887 1.2:-3564720 None:intergenic
GATTCTCAGATGCGAAAGTT+TGG 0.384482 1.2:-3561861 None:intergenic
GAGAGGAATTGATGCGAAAA+AGG 0.386029 1.2:-3564425 None:intergenic
AGTATATAGCAGCGAATATT+GGG 0.387392 1.2:-3564447 None:intergenic
AAGCAACCTTGTACCTCAAA+TGG 0.396389 1.2:+3561502 MS.gene67081:CDS
AGCACTTGTCACTTCTTTCG+AGG 0.406623 1.2:+3563322 MS.gene67081:CDS
TCAAAGCTAGTCATGTCTTT+GGG 0.407287 1.2:+3563288 MS.gene67081:CDS
GGCATTTGTGGCTCTATTGT+TGG 0.413169 1.2:+3563906 MS.gene67081:CDS
CCTGAACTGACGGTGGTGCT+TGG 0.414463 1.2:-3560879 None:intergenic
GACTTTCAAGGGGTCCCACT+TGG 0.421667 1.2:+3560935 MS.gene67081:CDS
CAGCACTACATTGTGATGCT+TGG 0.426352 1.2:+3561461 MS.gene67081:CDS
ACATTGCTTCAGACTTGGTT+TGG 0.426916 1.2:+3561760 MS.gene67081:CDS
TCGGCTTAACCTTGTTTCTC+GGG 0.432455 1.2:+3564646 MS.gene67081:CDS
ACATGACTAGCTTTGAATAT+GGG 0.438479 1.2:-3563281 None:intergenic
ACATGACTCCCACCCATTTG+AGG 0.442621 1.2:-3561515 None:intergenic
TAGTCATGTCTTTGGGATGA+TGG 0.446341 1.2:+3563295 MS.gene67081:CDS
CAGACATAAACAACAATGTC+TGG 0.448314 1.2:-3561729 None:intergenic
CCAACTGTGGCAATAATAGT+TGG 0.450422 1.2:+3564997 MS.gene67081:CDS
GGGTGTTGCACCAGAAAGCC+TGG 0.450632 1.2:-3563731 None:intergenic
GGTGGGTTCCTTTCCAGAAA+AGG 0.452846 1.2:+3565079 MS.gene67081:CDS
CCAAGCACCACCGTCAGTTC+AGG 0.456536 1.2:+3560879 MS.gene67081:CDS
ATGTGCTCAGCCGAAGCATC+GGG 0.457152 1.2:+3563764 MS.gene67081:CDS
TGAGGTGGTGGTCCCGGTGG+CGG 0.457958 1.2:-3560904 None:intergenic
TCTGCTGATTGTAACACAAC+AGG 0.459246 1.2:+3562614 MS.gene67081:CDS
ACTATTATTGCCACAGTTGG+TGG 0.463983 1.2:-3564994 None:intergenic
TACACAATTAGAACAATTCA+AGG 0.469316 1.2:+3562170 MS.gene67081:CDS
AGTTGGTGGAGATGAGAATA+TGG 0.469785 1.2:-3564980 None:intergenic
ATGCTGATTGAAGGCATTTG+TGG 0.474680 1.2:+3563894 MS.gene67081:CDS
TTGCAAATAACAATTCCATA+AGG 0.480068 1.2:+3564610 MS.gene67081:CDS
GTCAGTTCAGGCACCGCCAC+CGG 0.482612 1.2:+3560891 MS.gene67081:CDS
GTGGTATGTGTGGTTGGACT+CGG 0.482699 1.2:+3562429 MS.gene67081:CDS
TATCTCCTGCAGCTGCTACT+GGG 0.483276 1.2:+3564571 MS.gene67081:intron
TCACCTGAAGCCCGATGCTT+CGG 0.483967 1.2:-3563774 None:intergenic
CTGAGCACATGTGCCGGAGG+GGG 0.486945 1.2:-3563751 None:intergenic
GTACTTTCTTCGCCGCAGCC+AGG 0.487390 1.2:+3563713 MS.gene67081:CDS
GGCATTAGCATGCTGATTGA+AGG 0.489200 1.2:+3563885 MS.gene67081:CDS
ATCACTTGCTTTCTATCTAC+CGG 0.489632 1.2:+3561810 MS.gene67081:CDS
CTAACTGGACCATGACCATC+AGG 0.492436 1.2:-3564705 None:intergenic
CATGTGCTCAGCCGAAGCAT+CGG 0.494578 1.2:+3563763 MS.gene67081:CDS
TCAACACATTGCTTCAGACT+TGG 0.504520 1.2:+3561755 MS.gene67081:CDS
CGGCTGAGCACATGTGCCGG+AGG 0.507745 1.2:-3563754 None:intergenic
AAATTCTGAGGTGGTGGTCC+CGG 0.508298 1.2:-3560910 None:intergenic
AGCTGAAGAAGCTGTTCCGC+TGG 0.512891 1.2:-3560961 None:intergenic
TGCACCAGAAAGCCTGGCTG+CGG 0.513047 1.2:-3563725 None:intergenic
CAGTTAGAACCAATGGTGGA+TGG 0.514008 1.2:+3564721 MS.gene67081:CDS
TCCCATTGTCATTGTACCTG+TGG 0.514468 1.2:+3562410 MS.gene67081:CDS
GGCTGAGCACATGTGCCGGA+GGG 0.515040 1.2:-3563753 None:intergenic
CTTCGGCTGAGCACATGTGC+CGG 0.519002 1.2:-3563757 None:intergenic
TAGGAATATATTCAGACAAA+CGG 0.520368 1.2:-3565143 None:intergenic
CTTGGTGGTTATCTGTGTCA+TGG 0.520942 1.2:-3560861 None:intergenic
TATTCCTAGTAGATTTCTCT+AGG 0.521140 1.2:+3565158 MS.gene67081:CDS
ACCACAGGTACAATGACAAT+GGG 0.521905 1.2:-3562411 None:intergenic
TGGACTCGGTCTGTTCGCGA+GGG 0.523642 1.2:+3562443 MS.gene67081:CDS
TGCTACATACCATGGTGCAC+GGG 0.526388 1.2:-3562891 None:intergenic
GAACTGACGGTGGTGCTTGG+TGG 0.527613 1.2:-3560876 None:intergenic
AGCAACCTTGTACCTCAAAT+GGG 0.529370 1.2:+3561503 MS.gene67081:CDS
AGTCATGTCTTTGGGATGAT+GGG 0.533189 1.2:+3563296 MS.gene67081:CDS
TTGCTACATACCATGGTGCA+CGG 0.537859 1.2:-3562892 None:intergenic
TTTGAAGCACCTTCATGCTA+AGG 0.538653 1.2:+3562721 MS.gene67081:CDS
GTGACTTACCCATCCACCAT+TGG 0.539247 1.2:-3564730 None:intergenic
CATGACTAGCTTTGAATATG+GGG 0.540448 1.2:-3563280 None:intergenic
GTTCGCGAGGGGCTTTCCAA+TGG 0.542911 1.2:+3562455 MS.gene67081:CDS
ACCATGGTGCACGGGTCAGA+AGG 0.543944 1.2:-3562883 None:intergenic
ACAATCAGCAGAAGGAGCAT+AGG 0.544491 1.2:-3562603 None:intergenic
TTGGACTCGGTCTGTTCGCG+AGG 0.546006 1.2:+3562442 MS.gene67081:CDS
AGTGAAAATGTCGGTCTACT+CGG 0.546301 1.2:+3564226 MS.gene67081:intron
CAACTGTGGCAATAATAGTT+GGG 0.546683 1.2:+3564998 MS.gene67081:CDS
CATGGTCCAGTTAGAACCAA+TGG 0.547851 1.2:+3564714 MS.gene67081:CDS
TCCCACCCATTTGAGGTACA+AGG 0.549191 1.2:-3561508 None:intergenic
AGTCCAAAATTCTGAGGTGG+TGG 0.551027 1.2:-3560916 None:intergenic
GTACCTGTGGTATGTGTGGT+TGG 0.555163 1.2:+3562423 MS.gene67081:CDS
GCTGAGCACATGTGCCGGAG+GGG 0.557764 1.2:-3563752 None:intergenic
AGGCTTCCGGTGATTATGGG+TGG 0.559262 1.2:+3561787 MS.gene67081:CDS
ATATCTTCCTTGGATATAGT+AGG 0.561320 1.2:+3562219 MS.gene67081:CDS
TATTCCTAGAGAAATCTACT+AGG 0.561420 1.2:-3565162 None:intergenic
TCCTTGGATATAGTAGGACA+TGG 0.564119 1.2:+3562225 MS.gene67081:CDS
TACTCGGTCTCACACACATA+GGG 0.564279 1.2:+3564242 MS.gene67081:CDS
AACGCCATGAAGGATTTGAA+TGG 0.564370 1.2:-3560996 None:intergenic
GTACCCCACTGAAATGGGTA+TGG 0.565676 1.2:-3563257 None:intergenic
AGCGGCGAAAGCCCAAATAA+CGG 0.565764 1.2:-3562786 None:intergenic
CCAACTATTATTGCCACAGT+TGG 0.566946 1.2:-3564997 None:intergenic
TATGATGAGCCTTAGCATGA+AGG 0.568732 1.2:-3562730 None:intergenic
ATGTTCCATACCCATTTCAG+TGG 0.568754 1.2:+3563252 MS.gene67081:CDS
TCAGTTCAGGCACCGCCACC+GGG 0.569461 1.2:+3560892 MS.gene67081:CDS
AGTTAGAACCAATGGTGGAT+GGG 0.570107 1.2:+3564722 MS.gene67081:CDS
GGTGGCGGTGCCTGAACTGA+CGG 0.570549 1.2:-3560889 None:intergenic
CTACTCGGTCTCACACACAT+AGG 0.573563 1.2:+3564241 MS.gene67081:CDS
ACCTTGTACCTCAAATGGGT+GGG 0.574764 1.2:+3561507 MS.gene67081:CDS
AAAAGATACTAACGCCATGA+AGG 0.576140 1.2:-3561006 None:intergenic
GGTTCCTTTCCAGAAAAGGA+AGG 0.579848 1.2:+3565083 MS.gene67081:CDS
TGTATGCACCAGCAACGGTA+AGG 0.580085 1.2:-3562811 None:intergenic
TGTTCCATACCCATTTCAGT+GGG 0.582233 1.2:+3563253 MS.gene67081:CDS
AACCTTGTACCTCAAATGGG+TGG 0.584925 1.2:+3561506 MS.gene67081:CDS
TTCTGGAAAGGAACCCACCA+TGG 0.587333 1.2:-3565075 None:intergenic
TTCTGAGGTGGTGGTCCCGG+TGG 0.588875 1.2:-3560907 None:intergenic
CCTTGGATATAGTAGGACAT+GGG 0.589670 1.2:+3562226 MS.gene67081:CDS
CTTGCAGATTGTGTGCAGAT+CGG 0.590049 1.2:+3562576 MS.gene67081:CDS
GATAATTGTAGTGAAAATGT+CGG 0.591973 1.2:+3564217 MS.gene67081:intron
AGGCTCATCATATACTTGAG+AGG 0.595130 1.2:+3562741 MS.gene67081:CDS
TACCACAGGTACAATGACAA+TGG 0.595377 1.2:-3562412 None:intergenic
CCCATGTCCTACTATATCCA+AGG 0.596457 1.2:-3562226 None:intergenic
TCATTTATGATCGACATCAC+CGG 0.597681 1.2:-3561829 None:intergenic
GGACTCGGTCTGTTCGCGAG+GGG 0.599513 1.2:+3562444 MS.gene67081:CDS
TGGACAGAGGACTTCCATGG+TGG 0.609884 1.2:+3565061 MS.gene67081:CDS
GGACAGAGGACTTCCATGGT+GGG 0.611007 1.2:+3565062 MS.gene67081:CDS
AGTGATCCACCCATAATCAC+CGG 0.611658 1.2:-3561793 None:intergenic
CATTGTACCTGTGGTATGTG+TGG 0.617786 1.2:+3562419 MS.gene67081:CDS
AGTATTGTATGCACCAGCAA+CGG 0.621068 1.2:-3562816 None:intergenic
GGCTGCGGCGAAGAAAGTAC+CGG 0.621910 1.2:-3563710 None:intergenic
CTTGAAAGTCCAAAATTCTG+AGG 0.626530 1.2:-3560922 None:intergenic
GTTCCTTTCCAGAAAAGGAA+GGG 0.629131 1.2:+3565084 MS.gene67081:CDS
GGGTCCCACTTGGACTCCAG+CGG 0.630127 1.2:+3560945 MS.gene67081:CDS
ATAGCAGCGAATATTGGGAG+AGG 0.630706 1.2:-3564442 None:intergenic
CTGTTCCGCTGGAGTCCAAG+TGG 0.633722 1.2:-3560950 None:intergenic
CTGTGGACAGAGGACTTCCA+TGG 0.638844 1.2:+3565058 MS.gene67081:CDS
ACCAGCAACGGTAAGGATAG+CGG 0.639172 1.2:-3562804 None:intergenic
GTCATGAACACTGCACCTGA+TGG 0.642428 1.2:+3564690 MS.gene67081:CDS
GTGTTCATGACAAAATATTG+TGG 0.643236 1.2:-3564678 None:intergenic
TGTTCCGCTGGAGTCCAAGT+GGG 0.644188 1.2:-3560949 None:intergenic
CTTGGATATAGTAGGACATG+GGG 0.644457 1.2:+3562227 MS.gene67081:CDS
GGTCCAGTTAGAACCAATGG+TGG 0.646071 1.2:+3564717 MS.gene67081:CDS
ATTCTCATCTCCACCAACTG+TGG 0.646273 1.2:+3564984 MS.gene67081:CDS
AATTGAGATCCCGAGAAACA+AGG 0.647055 1.2:-3564655 None:intergenic
TGAAGCCAAACAAACAGCTG+TGG 0.648330 1.2:+3565041 MS.gene67081:CDS
GAAAGTCCAAAATTCTGAGG+TGG 0.648379 1.2:-3560919 None:intergenic
ACCTTCTGACCCGTGCACCA+TGG 0.650262 1.2:+3562882 MS.gene67081:CDS
AGTCCAACCACACATACCAC+AGG 0.653099 1.2:-3562426 None:intergenic
ACACATAGGGAGCAGAAGAG+TGG 0.656435 1.2:+3564255 MS.gene67081:CDS
AAACAAACAGCTGTGGACAG+AGG 0.674809 1.2:+3565048 MS.gene67081:CDS
GTTGTGTTACAATCAGCAGA+AGG 0.677477 1.2:-3562611 None:intergenic
AACACTGCACCTGATGGTCA+TGG 0.680577 1.2:+3564696 MS.gene67081:CDS
ATGACTAGCTTTGAATATGG+GGG 0.701834 1.2:-3563279 None:intergenic
GGCGGTGCCTGAACTGACGG+TGG 0.713228 1.2:-3560886 None:intergenic
GTTCCATACCCATTTCAGTG+GGG 0.714740 1.2:+3563254 MS.gene67081:CDS
ATATATTCAGACAAACGGAG+AGG 0.715929 1.2:-3565138 None:intergenic
AGAGTGGTGCAAATGTCATG+TGG 0.748681 1.2:+3564271 MS.gene67081:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTTT+GGG + chr1.2:3561357-3561376 MS.gene67081:intron 0.0%
!!! TTTTTTTATTTTTATTTTTT+TGG + chr1.2:3561356-3561375 MS.gene67081:intron 0.0%
!! AATTAAAAATACTAAGAATA+AGG - chr1.2:3563361-3563380 None:intergenic 10.0%
!!! AAATTGAAATTTTTAGAATT+TGG - chr1.2:3562003-3562022 None:intergenic 10.0%
!!! AATTGAAATTTTTAGAATTT+GGG - chr1.2:3562002-3562021 None:intergenic 10.0%
!!! ATAATTTTTTTTACAAGTTA+AGG - chr1.2:3561102-3561121 None:intergenic 10.0%
!! AATTAAGTTAATTCTTCAAA+TGG - chr1.2:3563815-3563834 None:intergenic 15.0%
!! AATTCTTAACAAATAATCAA+TGG - chr1.2:3564166-3564185 None:intergenic 15.0%
!! ACTATAATAAAAGTTTGAAA+TGG + chr1.2:3562518-3562537 MS.gene67081:intron 15.0%
!! ATATATATGAAAATGACAAA+AGG - chr1.2:3564821-3564840 None:intergenic 15.0%
!! TATATATGAAAATGACAAAA+GGG - chr1.2:3564820-3564839 None:intergenic 15.0%
!!! GTTTATTAGTTAATATCTTT+TGG + chr1.2:3562318-3562337 MS.gene67081:intron 15.0%
!!! TCTTAGTATTTTTAATTCTA+CGG + chr1.2:3563364-3563383 MS.gene67081:intron 15.0%
!!! TTAAATATTGATTATAGACA+TGG + chr1.2:3564138-3564157 MS.gene67081:intron 15.0%
!!! TTTCAAACTTTTATTATAGT+AGG - chr1.2:3562518-3562537 None:intergenic 15.0%
!!! TTTTTTAAAAAAAGTTGCTT+TGG + chr1.2:3561257-3561276 MS.gene67081:intron 15.0%
!! ATAAGTTTATATGTTTGTAG+AGG + chr1.2:3561961-3561980 MS.gene67081:intron 20.0%
!! ATAATTTAATGTGCATGTAA+TGG - chr1.2:3564507-3564526 None:intergenic 20.0%
!! ATATATGAAATCAACCAAAA+CGG - chr1.2:3564903-3564922 None:intergenic 20.0%
!! ATGAAAACATATTGTGATTT+CGG + chr1.2:3561902-3561921 MS.gene67081:intron 20.0%
!! CAAACATATAAACTTATGTT+CGG - chr1.2:3561958-3561977 None:intergenic 20.0%
!! TAGCAAAAGTAGTATATTTA+GGG + chr1.2:3562909-3562928 MS.gene67081:intron 20.0%
!!! AAATTTTTAGAATTTGGGTT+GGG - chr1.2:3561997-3562016 None:intergenic 20.0%
!!! AACAATTATGTTTTTATTCC+AGG + chr1.2:3563225-3563244 MS.gene67081:intron 20.0%
!!! ATAAGGAATATCTATGTTTT+CGG + chr1.2:3564627-3564646 MS.gene67081:CDS 20.0%
!!! ATGATTTTATGCTCTATTTT+TGG + chr1.2:3564298-3564317 MS.gene67081:CDS 20.0%
!!! ATTAAACTTTTTTTCCAAAC+AGG + chr1.2:3563151-3563170 MS.gene67081:intron 20.0%
!!! CTTATGTATAAGCTATTTTT+AGG - chr1.2:3563123-3563142 None:intergenic 20.0%
!!! GTAATTGTTGTTTTTTGTAA+CGG + chr1.2:3561603-3561622 MS.gene67081:intron 20.0%
! AAAAAATGTGAATTTGCCAA+TGG - chr1.2:3564070-3564089 None:intergenic 25.0%
! AAACTCATAAGTGAATGTTT+CGG - chr1.2:3562653-3562672 None:intergenic 25.0%
! AAATTTACCTGAAATAGACA+TGG - chr1.2:3564401-3564420 None:intergenic 25.0%
! AACTGATGATCTAATTAATC+TGG + chr1.2:3563654-3563673 MS.gene67081:intron 25.0%
! ACAATAACAACAACAAAATC+AGG - chr1.2:3561682-3561701 None:intergenic 25.0%
! ATCAACAATAATGGTAGTAT+AGG - chr1.2:3563622-3563641 None:intergenic 25.0%
! ATTACACTTCAATTCTTGTT+TGG + chr1.2:3564329-3564348 MS.gene67081:intron 25.0%
! GAAAACATAGATATTCCTTA+TGG - chr1.2:3564628-3564647 None:intergenic 25.0%
! GATAATTGTAGTGAAAATGT+CGG + chr1.2:3564217-3564236 MS.gene67081:intron 25.0%
! GATAGAGAGATAATTGTATA+AGG - chr1.2:3564555-3564574 None:intergenic 25.0%
! GTAGCAAAAGTAGTATATTT+AGG + chr1.2:3562908-3562927 MS.gene67081:intron 25.0%
! GTCTCTCATTATATGAAATA+AGG + chr1.2:3561931-3561950 MS.gene67081:intron 25.0%
! TAAGTAACATTTAAGTGCAA+TGG - chr1.2:3564361-3564380 None:intergenic 25.0%
! TACACAATTAGAACAATTCA+AGG + chr1.2:3562170-3562189 MS.gene67081:CDS 25.0%
! TAGGAATATATTCAGACAAA+CGG - chr1.2:3565146-3565165 None:intergenic 25.0%
! TATAGTAGGTAATTTATTCG+TGG - chr1.2:3562504-3562523 None:intergenic 25.0%
! TATTTAACCAAATAAAACCC+AGG - chr1.2:3564125-3564144 None:intergenic 25.0%
! TTGCAAATAACAATTCCATA+AGG + chr1.2:3564610-3564629 MS.gene67081:CDS 25.0%
!! ACTTATTTGAGTCTTTTCTT+TGG - chr1.2:3562843-3562862 None:intergenic 25.0%
!! ATGTCTATTTCAGGTAAATT+TGG + chr1.2:3564400-3564419 MS.gene67081:intron 25.0%
!! ATGTTACTAAAATACCGTTT+TGG + chr1.2:3564886-3564905 MS.gene67081:intron 25.0%
!! CTTGTAACTTTTGTGATATA+GGG + chr1.2:3563864-3563883 MS.gene67081:intron 25.0%
!! TAGTATATTTAGGGTCTATT+TGG + chr1.2:3562918-3562937 MS.gene67081:intron 25.0%
!! TTGAATCACCAATTTTATGT+TGG - chr1.2:3562108-3562127 None:intergenic 25.0%
!! TTTCTCTCTTTATCATCTTT+TGG + chr1.2:3562350-3562369 MS.gene67081:intron 25.0%
!!! AATTTTTAGAATTTGGGTTG+GGG - chr1.2:3561996-3562015 None:intergenic 25.0%
!!! ATGTTAGTATTGCTAGTTTT+TGG + chr1.2:3561629-3561648 MS.gene67081:intron 25.0%
!!! GAAATTTTTAGAATTTGGGT+TGG - chr1.2:3561998-3562017 None:intergenic 25.0%
!!! GCTATATACTGTGTTTTATT+CGG + chr1.2:3564460-3564479 MS.gene67081:CDS 25.0%
!!! TTTTTTTCTCTTTCTTTACC+AGG + chr1.2:3562379-3562398 MS.gene67081:intron 25.0%
AACTTGGAACAGTTAAATTG+AGG - chr1.2:3563178-3563197 None:intergenic 30.0%
AAGTTTCTACATGTCATATC+TGG - chr1.2:3563433-3563452 None:intergenic 30.0%
AATACGCTGAAAACAACTTA+TGG - chr1.2:3563026-3563045 None:intergenic 30.0%
ACAAAAGGGACTTGTAAAAA+GGG - chr1.2:3564806-3564825 None:intergenic 30.0%
AGTATATAGCAGCGAATATT+GGG - chr1.2:3564450-3564469 None:intergenic 30.0%
AGTTTATATGTTTGTAGAGG+TGG + chr1.2:3561964-3561983 MS.gene67081:intron 30.0%
ATATCTTCCTTGGATATAGT+AGG + chr1.2:3562219-3562238 MS.gene67081:CDS 30.0%
ATTTAATGTGCATGTAATGG+TGG - chr1.2:3564504-3564523 None:intergenic 30.0%
CCTATATCACAAAAGTTACA+AGG - chr1.2:3563866-3563885 None:intergenic 30.0%
GATCACTTGATGAAAAAGAT+TGG + chr1.2:3561551-3561570 MS.gene67081:intron 30.0%
GTGTTCATGACAAAATATTG+TGG - chr1.2:3564681-3564700 None:intergenic 30.0%
TAACAACGGATCAACAATAA+TGG - chr1.2:3563631-3563650 None:intergenic 30.0%
TATTCCTAGTAGATTTCTCT+AGG + chr1.2:3565158-3565177 MS.gene67081:CDS 30.0%
TCAGAAAGAGAATTTGAACT+TGG - chr1.2:3563194-3563213 None:intergenic 30.0%
TGCTTTGTCCAACATAAAAT+TGG + chr1.2:3562097-3562116 MS.gene67081:intron 30.0%
TTTAATGTAGCTACATGTGT+CGG + chr1.2:3563474-3563493 MS.gene67081:intron 30.0%
! AAATTTTGAATGCAGTCAAC+CGG + chr1.2:3563691-3563710 MS.gene67081:intron 30.0%
! AATTTTACAGCTTCATTCTC+TGG + chr1.2:3563573-3563592 MS.gene67081:intron 30.0%
! ACAACAACCTTTTACATTTC+CGG + chr1.2:3562688-3562707 MS.gene67081:intron 30.0%
! CCTTGTAACTTTTGTGATAT+AGG + chr1.2:3563863-3563882 MS.gene67081:intron 30.0%
! GATCATCAGTTTGATAACAA+CGG - chr1.2:3563645-3563664 None:intergenic 30.0%
! GATTTTTCCATGTCTATTTC+AGG + chr1.2:3564391-3564410 MS.gene67081:intron 30.0%
! TCAGAATTTTGGACTTTCAA+GGG + chr1.2:3560924-3560943 MS.gene67081:CDS 30.0%
! TCTTTTGTCAATATCTTCCT+TGG + chr1.2:3562209-3562228 MS.gene67081:CDS 30.0%
! TTATGTTTAGTGTTCTGAGT+AGG + chr1.2:3563979-3563998 MS.gene67081:intron 30.0%
!! ACATGACTAGCTTTGAATAT+GGG - chr1.2:3563284-3563303 None:intergenic 30.0%
!! TATTGTTTTGTAGCACGATA+AGG + chr1.2:3561696-3561715 MS.gene67081:intron 30.0%
!!! GTATTGCTAGTTTTTGGTAA+TGG + chr1.2:3561635-3561654 MS.gene67081:intron 30.0%
AAAAGATACTAACGCCATGA+AGG - chr1.2:3561009-3561028 None:intergenic 35.0%
AGTTAAATTGAGGTCCTGTT+TGG - chr1.2:3563168-3563187 None:intergenic 35.0%
ATATATTCAGACAAACGGAG+AGG - chr1.2:3565141-3565160 None:intergenic 35.0%
ATCACTTGCTTTCTATCTAC+CGG + chr1.2:3561810-3561829 MS.gene67081:CDS 35.0%
CAACTGTGGCAATAATAGTT+GGG + chr1.2:3564998-3565017 MS.gene67081:CDS 35.0%
CAATGGTATAACTAGACACT+AGG - chr1.2:3564053-3564072 None:intergenic 35.0%
CAGACATAAACAACAATGTC+TGG - chr1.2:3561732-3561751 None:intergenic 35.0%
CAGTATATAGCAGCGAATAT+TGG - chr1.2:3564451-3564470 None:intergenic 35.0%
CTAGTGTCTAGTTATACCAT+TGG + chr1.2:3564051-3564070 MS.gene67081:intron 35.0%
CTTGAAAGTCCAAAATTCTG+AGG - chr1.2:3560925-3560944 None:intergenic 35.0%
GAAAACAACTTATGGACATG+AGG - chr1.2:3563018-3563037 None:intergenic 35.0%
GACAAAAGGGACTTGTAAAA+AGG - chr1.2:3564807-3564826 None:intergenic 35.0%
TATCTGCATTGCCGTTATTT+GGG + chr1.2:3562775-3562794 MS.gene67081:CDS 35.0%
TATGTAGCACTTCAGATCAA+AGG - chr1.2:3563535-3563554 None:intergenic 35.0%
TCAAAGCTAGTCATGTCTTT+GGG + chr1.2:3563288-3563307 MS.gene67081:CDS 35.0%
TCATTTATGATCGACATCAC+CGG - chr1.2:3561832-3561851 None:intergenic 35.0%
TTATCTGCATTGCCGTTATT+TGG + chr1.2:3562774-3562793 MS.gene67081:CDS 35.0%
TTCAAAGCTAGTCATGTCTT+TGG + chr1.2:3563287-3563306 MS.gene67081:CDS 35.0%
! CAGAATTTTGGACTTTCAAG+GGG + chr1.2:3560925-3560944 MS.gene67081:CDS 35.0%
! CTCAGAATTTTGGACTTTCA+AGG + chr1.2:3560923-3560942 MS.gene67081:CDS 35.0%
!! ACTACTTTTGCTACATACCA+TGG - chr1.2:3562902-3562921 None:intergenic 35.0%
!! ATGACTAGCTTTGAATATGG+GGG - chr1.2:3563282-3563301 None:intergenic 35.0%
!! CAGACATTGTTGTTTATGTC+TGG + chr1.2:3561730-3561749 MS.gene67081:CDS 35.0%
!! CATGACTAGCTTTGAATATG+GGG - chr1.2:3563283-3563302 None:intergenic 35.0%
!! GACATGACTAGCTTTGAATA+TGG - chr1.2:3563285-3563304 None:intergenic 35.0%
!! TGTGTTTTATTCGGCATTGT+CGG + chr1.2:3564469-3564488 MS.gene67081:CDS 35.0%
!!! GCTAGTTTTTGGTAATGGTA+GGG + chr1.2:3561640-3561659 MS.gene67081:intron 35.0%
!!! TGCTAGTTTTTGGTAATGGT+AGG + chr1.2:3561639-3561658 MS.gene67081:intron 35.0%
AACATGGAAAGGGTTATAGG+TGG + chr1.2:3564006-3564025 MS.gene67081:intron 40.0%
AACGCCATGAAGGATTTGAA+TGG - chr1.2:3560999-3561018 None:intergenic 40.0%
AACTTTCGCATCTGAGAATC+AGG + chr1.2:3561864-3561883 MS.gene67081:CDS 40.0%
AAGCAACCTTGTACCTCAAA+TGG + chr1.2:3561502-3561521 MS.gene67081:CDS 40.0%
AAGCTATCCTAGAGAGCTTA+TGG - chr1.2:3563050-3563069 None:intergenic 40.0%
AATAAAACCCAGGTTGTGCA+TGG - chr1.2:3564115-3564134 None:intergenic 40.0%
AATTGAGATCCCGAGAAACA+AGG - chr1.2:3564658-3564677 None:intergenic 40.0%
ACCACAGGTACAATGACAAT+GGG - chr1.2:3562414-3562433 None:intergenic 40.0%
ACGTGTGGTTTATGCTTGTT+TGG + chr1.2:3562057-3562076 MS.gene67081:intron 40.0%
ACTATTATTGCCACAGTTGG+TGG - chr1.2:3564997-3565016 None:intergenic 40.0%
AGCAACCTTGTACCTCAAAT+GGG + chr1.2:3561503-3561522 MS.gene67081:CDS 40.0%
AGGCTCATCATATACTTGAG+AGG + chr1.2:3562741-3562760 MS.gene67081:CDS 40.0%
AGTAGGAGTGAACATGGAAA+GGG + chr1.2:3563996-3564015 MS.gene67081:intron 40.0%
AGTATTGTATGCACCAGCAA+CGG - chr1.2:3562819-3562838 None:intergenic 40.0%
AGTGAAAATGTCGGTCTACT+CGG + chr1.2:3564226-3564245 MS.gene67081:intron 40.0%
ATGGAAATAGCAGTGGAGTA+TGG - chr1.2:3564096-3564115 None:intergenic 40.0%
ATGTTCCATACCCATTTCAG+TGG + chr1.2:3563252-3563271 MS.gene67081:CDS 40.0%
CCAACTATTATTGCCACAGT+TGG - chr1.2:3565000-3565019 None:intergenic 40.0%
CCAACTGTGGCAATAATAGT+TGG + chr1.2:3564997-3565016 MS.gene67081:CDS 40.0%
CCTTGGATATAGTAGGACAT+GGG + chr1.2:3562226-3562245 MS.gene67081:CDS 40.0%
CGTATTTCCATAAGCTCTCT+AGG + chr1.2:3563040-3563059 MS.gene67081:intron 40.0%
CTTGGATATAGTAGGACATG+GGG + chr1.2:3562227-3562246 MS.gene67081:CDS 40.0%
GAGAGGAATTGATGCGAAAA+AGG - chr1.2:3564428-3564447 None:intergenic 40.0%
GATTCTCAGATGCGAAAGTT+TGG - chr1.2:3561864-3561883 None:intergenic 40.0%
GCATCCATTCAAATCCTTCA+TGG + chr1.2:3560992-3561011 MS.gene67081:CDS 40.0%
GTCGCACAAATACTTACCAT+TGG - chr1.2:3562474-3562493 None:intergenic 40.0%
GTGAACATGGAAAGGGTTAT+AGG + chr1.2:3564003-3564022 MS.gene67081:intron 40.0%
GTTCCTTTCCAGAAAAGGAA+GGG + chr1.2:3565084-3565103 MS.gene67081:CDS 40.0%
GTTGTGTTACAATCAGCAGA+AGG - chr1.2:3562614-3562633 None:intergenic 40.0%
TACCACAGGTACAATGACAA+TGG - chr1.2:3562415-3562434 None:intergenic 40.0%
TACTGACATAAGCACTTGTG+TGG + chr1.2:3562962-3562981 MS.gene67081:intron 40.0%
TATGACACTTGCACTTGTAG+AGG + chr1.2:3562141-3562160 MS.gene67081:intron 40.0%
TATGATGAGCCTTAGCATGA+AGG - chr1.2:3562733-3562752 None:intergenic 40.0%
TCAACACATTGCTTCAGACT+TGG + chr1.2:3561755-3561774 MS.gene67081:CDS 40.0%
TCCTTGGATATAGTAGGACA+TGG + chr1.2:3562225-3562244 MS.gene67081:CDS 40.0%
TGGGTATGGAACATAAATCC+TGG - chr1.2:3563246-3563265 None:intergenic 40.0%
TGTTCCATACCCATTTCAGT+GGG + chr1.2:3563253-3563272 MS.gene67081:CDS 40.0%
TTGCCACACAAAACAAGACA+AGG - chr1.2:3564938-3564957 None:intergenic 40.0%
! ACATTGCTTCAGACTTGGTT+TGG + chr1.2:3561760-3561779 MS.gene67081:CDS 40.0%
! GAAAGTCCAAAATTCTGAGG+TGG - chr1.2:3560922-3560941 None:intergenic 40.0%
! TAACATCTCCCTTCCTTTTC+TGG - chr1.2:3565095-3565114 None:intergenic 40.0%
! TCTGCTGATTGTAACACAAC+AGG + chr1.2:3562614-3562633 MS.gene67081:CDS 40.0%
! TTCGGCTTAACCTTGTTTCT+CGG + chr1.2:3564645-3564664 MS.gene67081:CDS 40.0%
! TTTGAAGCACCTTCATGCTA+AGG + chr1.2:3562721-3562740 MS.gene67081:CDS 40.0%
! TTTTATTCGGCATTGTCGGT+AGG + chr1.2:3564473-3564492 MS.gene67081:intron 40.0%
!! AGTCATGTCTTTGGGATGAT+GGG + chr1.2:3563296-3563315 MS.gene67081:CDS 40.0%
!! AGTTAGAACCAATGGTGGAT+GGG + chr1.2:3564722-3564741 MS.gene67081:CDS 40.0%
!! AGTTGGTGGAGATGAGAATA+TGG - chr1.2:3564983-3565002 None:intergenic 40.0%
!! ATGCTGATTGAAGGCATTTG+TGG + chr1.2:3563894-3563913 MS.gene67081:CDS 40.0%
!! TAGTCATGTCTTTGGGATGA+TGG + chr1.2:3563295-3563314 MS.gene67081:CDS 40.0%
!! TTCAGACTTGGTTTGGTTCA+AGG + chr1.2:3561767-3561786 MS.gene67081:CDS 40.0%
!!! GTACCTTGTCTTGTTTTGTG+TGG + chr1.2:3564932-3564951 MS.gene67081:intron 40.0%
!!! TGCACAACCTGGGTTTTATT+TGG + chr1.2:3564115-3564134 MS.gene67081:intron 40.0%
AAACAAACAGCTGTGGACAG+AGG + chr1.2:3565048-3565067 MS.gene67081:CDS 45.0%
AACCTTGTACCTCAAATGGG+TGG + chr1.2:3561506-3561525 MS.gene67081:CDS 45.0%
ACCTTGTACCTCAAATGGGT+GGG + chr1.2:3561507-3561526 MS.gene67081:CDS 45.0%
AGAGTGGTGCAAATGTCATG+TGG + chr1.2:3564271-3564290 MS.gene67081:CDS 45.0%
AGTGATCCACCCATAATCAC+CGG - chr1.2:3561796-3561815 None:intergenic 45.0%
ATAGCAGCGAATATTGGGAG+AGG - chr1.2:3564445-3564464 None:intergenic 45.0%
ATTCTCATCTCCACCAACTG+TGG + chr1.2:3564984-3565003 MS.gene67081:CDS 45.0%
CAGCACTACATTGTGATGCT+TGG + chr1.2:3561461-3561480 MS.gene67081:CDS 45.0%
CATGGTCCAGTTAGAACCAA+TGG + chr1.2:3564714-3564733 MS.gene67081:CDS 45.0%
CATTGTACCTGTGGTATGTG+TGG + chr1.2:3562419-3562438 MS.gene67081:CDS 45.0%
CCCATGTCCTACTATATCCA+AGG - chr1.2:3562229-3562248 None:intergenic 45.0%
CTTGCAGATTGTGTGCAGAT+CGG + chr1.2:3562576-3562595 MS.gene67081:CDS 45.0%
GACAATGGGACTAAACAACC+TGG - chr1.2:3562400-3562419 None:intergenic 45.0%
GAGTAGGAGTGAACATGGAA+AGG + chr1.2:3563995-3564014 MS.gene67081:intron 45.0%
GGACTTGTAAAAAGGGACTG+AGG - chr1.2:3564799-3564818 None:intergenic 45.0%
GGTTCCTTTCCAGAAAAGGA+AGG + chr1.2:3565083-3565102 MS.gene67081:CDS 45.0%
GTCAACTGAATTGCTACGTG+TGG + chr1.2:3562042-3562061 MS.gene67081:intron 45.0%
GTTCCATACCCATTTCAGTG+GGG + chr1.2:3563254-3563273 MS.gene67081:CDS 45.0%
GTTGTGCATGGAAATAGCAG+TGG - chr1.2:3564103-3564122 None:intergenic 45.0%
TACTCGGTCTCACACACATA+GGG + chr1.2:3564242-3564261 MS.gene67081:CDS 45.0%
TCAAGGCTTCCGGTGATTAT+GGG + chr1.2:3561784-3561803 MS.gene67081:CDS 45.0%
TCCCATTGTCATTGTACCTG+TGG + chr1.2:3562410-3562429 MS.gene67081:CDS 45.0%
TCTGTCCACAGCTGTTTGTT+TGG - chr1.2:3565049-3565068 None:intergenic 45.0%
TGAAGCCAAACAAACAGCTG+TGG + chr1.2:3565041-3565060 MS.gene67081:CDS 45.0%
TGCAGGACCGGAAATGTAAA+AGG - chr1.2:3562698-3562717 None:intergenic 45.0%
TGCTTCAAATACTGCAGGAC+CGG - chr1.2:3562710-3562729 None:intergenic 45.0%
TGGAAAGGGTTATAGGTGGA+AGG + chr1.2:3564010-3564029 MS.gene67081:intron 45.0%
TGTCGGACACTAAGACATGT+TGG + chr1.2:3563497-3563516 MS.gene67081:intron 45.0%
TTCAAGGCTTCCGGTGATTA+TGG + chr1.2:3561783-3561802 MS.gene67081:CDS 45.0%
TTGCTACATACCATGGTGCA+CGG - chr1.2:3562895-3562914 None:intergenic 45.0%
! ACAATCAGCAGAAGGAGCAT+AGG - chr1.2:3562606-3562625 None:intergenic 45.0%
! AGCACTTGTCACTTCTTTCG+AGG + chr1.2:3563322-3563341 MS.gene67081:CDS 45.0%
! CAGTTAGAACCAATGGTGGA+TGG + chr1.2:3564721-3564740 MS.gene67081:CDS 45.0%
! CTTGGTGGTTATCTGTGTCA+TGG - chr1.2:3560864-3560883 None:intergenic 45.0%
! GCTATTTCCATGCACAACCT+GGG + chr1.2:3564105-3564124 MS.gene67081:intron 45.0%
! GGCATTAGCATGCTGATTGA+AGG + chr1.2:3563885-3563904 MS.gene67081:CDS 45.0%
! GGCATTTGTGGCTCTATTGT+TGG + chr1.2:3563906-3563925 MS.gene67081:CDS 45.0%
! GTTCTGAGTAGGAGTGAACA+TGG + chr1.2:3563990-3564009 MS.gene67081:intron 45.0%
! TCGGCTTAACCTTGTTTCTC+GGG + chr1.2:3564646-3564665 MS.gene67081:CDS 45.0%
!! AGTCCAAAATTCTGAGGTGG+TGG - chr1.2:3560919-3560938 None:intergenic 45.0%
!! CATCCACCATTGGTTCTAAC+TGG - chr1.2:3564723-3564742 None:intergenic 45.0%
!! GAAGGTGCTTCAAATACTGC+AGG - chr1.2:3562715-3562734 None:intergenic 45.0%
!! TCTCCCTTCCTTTTCTGGAA+AGG - chr1.2:3565090-3565109 None:intergenic 45.0%
!! TGCTATTTCCATGCACAACC+TGG + chr1.2:3564104-3564123 MS.gene67081:intron 45.0%
!! TTGGTTTGGTTCAAGGCTTC+CGG + chr1.2:3561774-3561793 MS.gene67081:CDS 45.0%
!!! TGCAGCTGAAGCATTGCTTT+TGG + chr1.2:3561433-3561452 MS.gene67081:intron 45.0%
AACACTGCACCTGATGGTCA+TGG + chr1.2:3564696-3564715 MS.gene67081:CDS 50.0%
ACACATAGGGAGCAGAAGAG+TGG + chr1.2:3564255-3564274 MS.gene67081:CDS 50.0%
ACATGACTCCCACCCATTTG+AGG - chr1.2:3561518-3561537 None:intergenic 50.0%
ACCAGCAACGGTAAGGATAG+CGG - chr1.2:3562807-3562826 None:intergenic 50.0%
AGCGGCGAAAGCCCAAATAA+CGG - chr1.2:3562789-3562808 None:intergenic 50.0%
AGTCCAACCACACATACCAC+AGG - chr1.2:3562429-3562448 None:intergenic 50.0%
CACACAATCTGCAAGCTGCA+TGG - chr1.2:3562571-3562590 None:intergenic 50.0%
CTAACTGGACCATGACCATC+AGG - chr1.2:3564708-3564727 None:intergenic 50.0%
CTACTCGGTCTCACACACAT+AGG + chr1.2:3564241-3564260 MS.gene67081:CDS 50.0%
GGTCCAGTTAGAACCAATGG+TGG + chr1.2:3564717-3564736 MS.gene67081:CDS 50.0%
GTACCCCACTGAAATGGGTA+TGG - chr1.2:3563260-3563279 None:intergenic 50.0%
GTACCTGTGGTATGTGTGGT+TGG + chr1.2:3562423-3562442 MS.gene67081:CDS 50.0%
GTCATGAACACTGCACCTGA+TGG + chr1.2:3564690-3564709 MS.gene67081:CDS 50.0%
GTGACTTACCCATCCACCAT+TGG - chr1.2:3564733-3564752 None:intergenic 50.0%
GTGGTATGTGTGGTTGGACT+CGG + chr1.2:3562429-3562448 MS.gene67081:CDS 50.0%
TATCTCCTGCAGCTGCTACT+GGG + chr1.2:3564571-3564590 MS.gene67081:intron 50.0%
TGCTACATACCATGGTGCAC+GGG - chr1.2:3562894-3562913 None:intergenic 50.0%
TGTATGCACCAGCAACGGTA+AGG - chr1.2:3562814-3562833 None:intergenic 50.0%
! GGACCACCACCTCAGAATTT+TGG + chr1.2:3560913-3560932 MS.gene67081:CDS 50.0%
! GGTGGGTTCCTTTCCAGAAA+AGG + chr1.2:3565079-3565098 MS.gene67081:CDS 50.0%
! GTAGCTACATGTGTCGGTGT+CGG + chr1.2:3563480-3563499 MS.gene67081:intron 50.0%
! TCCCACCCATTTGAGGTACA+AGG - chr1.2:3561511-3561530 None:intergenic 50.0%
! TTCTGGAAAGGAACCCACCA+TGG - chr1.2:3565078-3565097 None:intergenic 50.0%
!! AAATTCTGAGGTGGTGGTCC+CGG - chr1.2:3560913-3560932 None:intergenic 50.0%
AGCTGAAGAAGCTGTTCCGC+TGG - chr1.2:3560964-3560983 None:intergenic 55.0%
AGGCTTCCGGTGATTATGGG+TGG + chr1.2:3561787-3561806 MS.gene67081:CDS 55.0%
CATGTGCTCAGCCGAAGCAT+CGG + chr1.2:3563763-3563782 MS.gene67081:CDS 55.0%
CTATCTCCTGCAGCTGCTAC+TGG + chr1.2:3564570-3564589 MS.gene67081:intron 55.0%
CTGTGGACAGAGGACTTCCA+TGG + chr1.2:3565058-3565077 MS.gene67081:CDS 55.0%
GACTTTCAAGGGGTCCCACT+TGG + chr1.2:3560935-3560954 MS.gene67081:CDS 55.0%
GGACAGAGGACTTCCATGGT+GGG + chr1.2:3565062-3565081 MS.gene67081:CDS 55.0%
GTGGCTGTTTGAGAGAGCTC+AGG + chr1.2:3562981-3563000 MS.gene67081:intron 55.0%
TCACCTGAAGCCCGATGCTT+CGG - chr1.2:3563777-3563796 None:intergenic 55.0%
TGGACAGAGGACTTCCATGG+TGG + chr1.2:3565061-3565080 MS.gene67081:CDS 55.0%
TGTTCCGCTGGAGTCCAAGT+GGG - chr1.2:3560952-3560971 None:intergenic 55.0%
! ATGTGCTCAGCCGAAGCATC+GGG + chr1.2:3563764-3563783 MS.gene67081:CDS 55.0%
!! ATGGGGGTACCCCACTGAAA+TGG - chr1.2:3563266-3563285 None:intergenic 55.0%
!! TGGGGGTACCCCACTGAAAT+GGG - chr1.2:3563265-3563284 None:intergenic 55.0%
ACCATGGTGCACGGGTCAGA+AGG - chr1.2:3562886-3562905 None:intergenic 60.0%
ACCTTCTGACCCGTGCACCA+TGG + chr1.2:3562882-3562901 MS.gene67081:CDS 60.0%
CCAAGCACCACCGTCAGTTC+AGG + chr1.2:3560879-3560898 MS.gene67081:CDS 60.0%
CCTGAACTGACGGTGGTGCT+TGG - chr1.2:3560882-3560901 None:intergenic 60.0%
CTGTTCCGCTGGAGTCCAAG+TGG - chr1.2:3560953-3560972 None:intergenic 60.0%
CTTCGGCTGAGCACATGTGC+CGG - chr1.2:3563760-3563779 None:intergenic 60.0%
GAACTGACGGTGGTGCTTGG+TGG - chr1.2:3560879-3560898 None:intergenic 60.0%
GAGATCCCAGTAGCAGCTGC+AGG - chr1.2:3564579-3564598 None:intergenic 60.0%
GCCGCTATCCTTACCGTTGC+TGG + chr1.2:3562803-3562822 MS.gene67081:CDS 60.0%
GTACTTTCTTCGCCGCAGCC+AGG + chr1.2:3563713-3563732 MS.gene67081:CDS 60.0%
GTTCGCGAGGGGCTTTCCAA+TGG + chr1.2:3562455-3562474 MS.gene67081:CDS 60.0%
TGCACCAGAAAGCCTGGCTG+CGG - chr1.2:3563728-3563747 None:intergenic 60.0%
TTCTGGTGCAACACCCCCTC+CGG + chr1.2:3563738-3563757 MS.gene67081:CDS 60.0%
! GGCTGCGGCGAAGAAAGTAC+CGG - chr1.2:3563713-3563732 None:intergenic 60.0%
! GGGTGTTGCACCAGAAAGCC+TGG - chr1.2:3563734-3563753 None:intergenic 60.0%
! TGGACTCGGTCTGTTCGCGA+GGG + chr1.2:3562443-3562462 MS.gene67081:CDS 60.0%
! TTGGACTCGGTCTGTTCGCG+AGG + chr1.2:3562442-3562461 MS.gene67081:CDS 60.0%
CTGAGCACATGTGCCGGAGG+GGG - chr1.2:3563754-3563773 None:intergenic 65.0%
GCTGAGCACATGTGCCGGAG+GGG - chr1.2:3563755-3563774 None:intergenic 65.0%
GGCTGAGCACATGTGCCGGA+GGG - chr1.2:3563756-3563775 None:intergenic 65.0%
GGGTCCCACTTGGACTCCAG+CGG + chr1.2:3560945-3560964 MS.gene67081:CDS 65.0%
TTCGCCGCAGCCAGGCTTTC+TGG + chr1.2:3563721-3563740 MS.gene67081:CDS 65.0%
! GGACTCGGTCTGTTCGCGAG+GGG + chr1.2:3562444-3562463 MS.gene67081:CDS 65.0%
! GGTGGCGGTGCCTGAACTGA+CGG - chr1.2:3560892-3560911 None:intergenic 65.0%
! GTCAGTTCAGGCACCGCCAC+CGG + chr1.2:3560891-3560910 MS.gene67081:CDS 65.0%
! TCAGTTCAGGCACCGCCACC+GGG + chr1.2:3560892-3560911 MS.gene67081:CDS 65.0%
!! CAGCCGAAGCATCGGGCTTC+AGG + chr1.2:3563771-3563790 MS.gene67081:CDS 65.0%
!! TTCTGAGGTGGTGGTCCCGG+TGG - chr1.2:3560910-3560929 None:intergenic 65.0%
CGGCTGAGCACATGTGCCGG+AGG - chr1.2:3563757-3563776 None:intergenic 70.0%
GGCGGTGCCTGAACTGACGG+TGG - chr1.2:3560889-3560908 None:intergenic 70.0%
! TGAGGTGGTGGTCCCGGTGG+CGG - chr1.2:3560907-3560926 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3560856 3565179 3560856 ID=MS.gene67081
chr1.2 mRNA 3560856 3565179 3560856 ID=MS.gene67081.t1;Parent=MS.gene67081
chr1.2 exon 3560856 3561015 3560856 ID=MS.gene67081.t1.exon1;Parent=MS.gene67081.t1
chr1.2 CDS 3560856 3561015 3560856 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3561438 3561535 3561438 ID=MS.gene67081.t1.exon2;Parent=MS.gene67081.t1
chr1.2 CDS 3561438 3561535 3561438 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3561709 3561885 3561709 ID=MS.gene67081.t1.exon3;Parent=MS.gene67081.t1
chr1.2 CDS 3561709 3561885 3561709 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3562161 3562261 3562161 ID=MS.gene67081.t1.exon4;Parent=MS.gene67081.t1
chr1.2 CDS 3562161 3562261 3562161 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3562401 3562476 3562401 ID=MS.gene67081.t1.exon5;Parent=MS.gene67081.t1
chr1.2 CDS 3562401 3562476 3562401 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3562576 3562635 3562576 ID=MS.gene67081.t1.exon6;Parent=MS.gene67081.t1
chr1.2 CDS 3562576 3562635 3562576 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3562719 3562903 3562719 ID=MS.gene67081.t1.exon7;Parent=MS.gene67081.t1
chr1.2 CDS 3562719 3562903 3562719 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3563247 3563343 3563247 ID=MS.gene67081.t1.exon8;Parent=MS.gene67081.t1
chr1.2 CDS 3563247 3563343 3563247 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3563706 3563792 3563706 ID=MS.gene67081.t1.exon9;Parent=MS.gene67081.t1
chr1.2 CDS 3563706 3563792 3563706 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3563885 3563943 3563885 ID=MS.gene67081.t1.exon10;Parent=MS.gene67081.t1
chr1.2 CDS 3563885 3563943 3563885 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3564228 3564319 3564228 ID=MS.gene67081.t1.exon11;Parent=MS.gene67081.t1
chr1.2 CDS 3564228 3564319 3564228 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3564413 3564490 3564413 ID=MS.gene67081.t1.exon12;Parent=MS.gene67081.t1
chr1.2 CDS 3564413 3564490 3564413 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3564583 3564743 3564583 ID=MS.gene67081.t1.exon13;Parent=MS.gene67081.t1
chr1.2 CDS 3564583 3564743 3564583 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
chr1.2 exon 3564961 3565179 3564961 ID=MS.gene67081.t1.exon14;Parent=MS.gene67081.t1
chr1.2 CDS 3564961 3565179 3564961 ID=cds.MS.gene67081.t1;Parent=MS.gene67081.t1
Gene Sequence

>MS.gene67081

ATGGGCCATGACACAGATAACCACCAAGCACCACCGTCAGTTCAGGCACCGCCACCGGGACCACCACCTCAGAATTTTGGACTTTCAAGGGGTCCCACTTGGACTCCAGCGGAACAGCTTCTTCAGCTTCATTATTGCATCCATTCAAATCCTTCATGGCGTTAGTATCTTTTTCAATCTTTCAACTTGATTTGATTCTTCATTTTTTATTTTATTTTTACTTTTTTTGATTCATTTTTTATGCCTTAACTTGTAAAAAAAATTATGCTTGATGTTAAAAGTAGTTGAGAATCTTATGTCAAAGAGTTGTTGTAATTTTTATTTTTTTAGTTCAGTTTAGTTTATTTGTTGATTATTATTTATTACTTTTTGTTAACTTTATTCTAGTTTGATTCTGTTTTTTTTTTAAAAAAAGTTGCTTTGGATTTTGTTTTTGTCATTTGTATGAATCTTTTGTTAGATTCAGTATGTAAAAGTGAAGTGAAACAAGTTTTGATATTTTTTTTTATTTTTATTTTTTTGGGTTTGAAGTTAAAAAATTCATCTTTTGTTTACAACAATTTTTTATTTTTCATTTTGCAGCTGAAGCATTGCTTTTGGCTTTTCAGCACTACATTGTGATGCTTGGAACAACTGTTCTGATTGCAAGCAACCTTGTACCTCAAATGGGTGGGAGTCATGTAAGTATAAACTGAGATCACTTGATGAAAAAGATTGGTACTTGTTATGTATTTGTGTGATGAATCTGTAATTGTTGTTTTTTGTAACGGCAAATGTTAGTATTGCTAGTTTTTGGTAATGGTAGGGATCGAACGCTCAACGTCCTGATTTTGTTGTTGTTATTGTTTTGTAGCACGATAAGGCTTGTGTGATCCAGACATTGTTGTTTATGTCTGGTATCAACACATTGCTTCAGACTTGGTTTGGTTCAAGGCTTCCGGTGATTATGGGTGGATCACTTGCTTTCTATCTACCGGTGATGTCGATCATAAATGATTACAATGACCAAACTTTCGCATCTGAGAATCAGGTTTGTTTATTTCAAAATGAAAACATATTGTGATTTCGGTTAAGAGTCTCTCATTATATGAAATAAGGTCCGAACATAAGTTTATATGTTTGTAGAGGTGGTTTTAGCCCCAACCCAAATTCTAAAAATTTCAATTTTTGATGTATTTATTTCTTTGTCAACTGAATTGCTACGTGTGGTTTATGCTTGTTTGGTTGTTTGTTAACTGAATTGCTTTGTCCAACATAAAATTGGTGATTCAAATCGCTAATCGATTATGACACTTGCACTTGTAGAGGTTTCGCTACACAATTAGAACAATTCAAGGATCTCTCATTGTTTCTTCTTTTGTCAATATCTTCCTTGGATATAGTAGGACATGGGGAAATTTAACAAAGTAAGTTCATGTCAATCTTCAATGTTAGTTTTATTTCACTATTAGTTAATTATTATGTTTATTAGTTAATATCTTTTGGTTAATTTTTTTTCTCTCTTTATCATCTTTTGGTTAATCTTTTTTTCTCTTTCTTTACCAGGTTGTTTAGTCCCATTGTCATTGTACCTGTGGTATGTGTGGTTGGACTCGGTCTGTTCGCGAGGGGCTTTCCAATGGTAAGTATTTGTGCGACGTCACATCCACGAATAAATTACCTACTATAATAAAAGTTTGAAATGGAAAGTTCATAAACTCAGTTATGTTCTTCCATGCAGCTTGCAGATTGTGTGCAGATCGGACTACCTATGCTCCTTCTGCTGATTGTAACACAACAGGTTTTATTTCTAATCCGAAACATTCACTTATGAGTTTTATTCTCTTATACTAACAACAACCTTTTACATTTCCGGTCCTGCAGTATTTGAAGCACCTTCATGCTAAGGCTCATCATATACTTGAGAGGTTTGCTTTACTTATCTGCATTGCCGTTATTTGGGCTTTCGCCGCTATCCTTACCGTTGCTGGTGCATACAATACTTCCAAAGAAAAGACTCAAATAAGTTGTCGCACAGATCGTTCGTACCTTCTGACCCGTGCACCATGGTATGTAGCAAAAGTAGTATATTTAGGGTCTATTTGGATTGACTTATGTCAGCTTAACTACTGACATAAGCACTTGTGTGGCTGTTTGAGAGAGCTCAGGAAAACAGTTTACCTCATGTCCATAAGTTGTTTTCAGCGTATTTCCATAAGCTCTCTAGGATAGCTTATGAAAATAGTTTAAAGCTTATATGAAAACAATTTGTTTTTATGTTATCTCCTAAAAATAGCTTATACATAAGCACTTTTAATTAAACTTTTTTTCCAAACAGGACCTCAATTTAACTGTTCCAAGTTCAAATTCTCTTTCTGAAATTTTATGATAACAATTATGTTTTTATTCCAGGATTTATGTTCCATACCCATTTCAGTGGGGTACCCCCATATTCAAAGCTAGTCATGTCTTTGGGATGATGGGAGCAGCACTTGTCACTTCTTTCGAGGTTTAGCAACTATTCCTTATTCTTAGTATTTTTAATTCTACGGATTGTTCTTATAATTTATATGCTATGAAGCGCTGACACATACACCAGATATGACATGTAGAAACTTATAATATAAGAATTAAAGTAATTTAATGTAGCTACATGTGTCGGTGTCGGACACTAAGACATGTTGGACACAAGACACACCTTTGATCTGAAGTGCTACATAGTTTATACGTTCATTCTCAATTTTACAGCTTCATTCTCTGGAAAATGATCTTAATTTCTTTAAGCCTATACTACCATTATTGTTGATCCGTTGTTATCAAACTGATGATCTAATTAATCTGGATCATTTTTTAATGAAATTTTGAATGCAGTCAACCGGTACTTTCTTCGCCGCAGCCAGGCTTTCTGGTGCAACACCCCCTCCGGCACATGTGCTCAGCCGAAGCATCGGGCTTCAGGTGAAGTTTAATCATCTCGCCATTTGAAGAATTAACTTAATTATTCTCTTACATTACAAAATCTTGATGTCCTTGTAACTTTTGTGATATAGGGCATTAGCATGCTGATTGAAGGCATTTGTGGCTCTATTGTTGGTACTACAGCATCTGTGTAAGAAAGCAATATTTTAACTACTTTTGTTTTGTTTATGTTTAGTGTTCTGAGTAGGAGTGAACATGGAAAGGGTTATAGGTGGAAGGAATAAAATTTAAGCGTACCTAGTGTCTAGTTATACCATTGGCAAATTCACATTTTTTGTGCCATACTCCACTGCTATTTCCATGCACAACCTGGGTTTTATTTGGTTAAATATTGATTATAGACATGGATCCATTGATTATTTGTTAAGAATTCTATATACGTGATAATCTCACTAATCTGTTTGATAATTGTAGTGAAAATGTCGGTCTACTCGGTCTCACACACATAGGGAGCAGAAGAGTGGTGCAAATGTCATGTGGTTTCATGATTTTATGCTCTATTTTTGGTACAATATATTACACTTCAATTCTTGTTTGGAGAGTTCCATTGCACTTAAATGTTACTTATGTAATTAATGATTTTTCCATGTCTATTTCAGGTAAATTTGGAGCCTTTTTCGCATCAATTCCTCTCCCAATATTCGCTGCTATATACTGTGTTTTATTCGGCATTGTCGGTAGGTGTTGCCACCATTACATGCACATTAAATTATTATAATTTTGACATGTAGATGCATACCTTATACAATTATCTCTCTATCTCCTGCAGCTGCTACTGGGATCTCATTTATACAGTTTGCAAATAACAATTCCATAAGGAATATCTATGTTTTCGGCTTAACCTTGTTTCTCGGGATCTCAATTCCACAATATTTTGTCATGAACACTGCACCTGATGGTCATGGTCCAGTTAGAACCAATGGTGGATGGGTAAGTCACTTATTAAGTCTTTAGAACATTAAACGATTTTATTCTTATACTACCTCAGTCCCTTTTTACAAGTCCCTTTTGTCATTTTCATATATATTAAGAAAAGTAGCCGGTGTATTTATCGTGTCTATTTTATGTATGAATGTTACTAAAATACCGTTTTGGTTGATTTCATATATCTGATTTGTGTACCTTGTCTTGTTTTGTGTGGCAACAGTTTAATGACATATTGAACACCATATTCTCATCTCCACCAACTGTGGCAATAATAGTTGGGACAGTTCTTGACAACACACTTGAAGCCAAACAAACAGCTGTGGACAGAGGACTTCCATGGTGGGTTCCTTTCCAGAAAAGGAAGGGAGATGTTAGAAATGATGAATTTTATCGCTTTCCTCTCCGTTTGTCTGAATATATTCCTAGTAGATTTCTCTAG
Protein sequence

>MS.gene67081.t1

MGHDTDNHQAPPSVQAPPPGPPPQNFGLSRGPTWTPAEQLLQLHYCIHSNPSWPEALLLAFQHYIVMLGTTVLIASNLVPQMGGSHHDKACVIQTLLFMSGINTLLQTWFGSRLPVIMGGSLAFYLPVMSIINDYNDQTFASENQRFRYTIRTIQGSLIVSSFVNIFLGYSRTWGNLTKLFSPIVIVPVVCVVGLGLFARGFPMLADCVQIGLPMLLLLIVTQQYLKHLHAKAHHILERFALLICIAVIWAFAAILTVAGAYNTSKEKTQISCRTDRSYLLTRAPWIYVPYPFQWGTPIFKASHVFGMMGAALVTSFESTGTFFAAARLSGATPPPAHVLSRSIGLQGISMLIEGICGSIVGTTASVENVGLLGLTHIGSRRVVQMSCGFMILCSIFGKFGAFFASIPLPIFAAIYCVLFGIVAATGISFIQFANNNSIRNIYVFGLTLFLGISIPQYFVMNTAPDGHGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLEAKQTAVDRGLPWWVPFQKRKGDVRNDEFYRFPLRLSEYIPSRFL