Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67193.t1 | XP_003599063.1 | 83.6 | 281 | 43 | 2 | 1 | 278 | 1 | 281 | 2.30E-120 | 441.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67193.t1 | P16270 | 58.0 | 274 | 97 | 9 | 1 | 270 | 1 | 260 | 7.5e-67 | 255.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67193.t1 | G7J1U2 | 83.6 | 281 | 43 | 2 | 1 | 278 | 1 | 281 | 1.7e-120 | 441.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051201 | MS.gene67193 | 0.812405 | 4.31E-51 | -1.69E-46 |
MS.gene052463 | MS.gene67193 | 0.82431 | 8.65E-54 | -1.69E-46 |
MS.gene05574 | MS.gene67193 | 0.830598 | 2.68E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67193.t1 | MTR_3g027280 | 83.630 | 281 | 43 | 2 | 1 | 278 | 1 | 281 | 6.41e-163 | 453 |
MS.gene67193.t1 | MTR_1g090957 | 78.495 | 279 | 49 | 3 | 1 | 278 | 1 | 269 | 2.68e-151 | 424 |
MS.gene67193.t1 | MTR_1g090930 | 69.314 | 277 | 77 | 4 | 1 | 273 | 1 | 273 | 1.94e-125 | 358 |
MS.gene67193.t1 | MTR_1g090937 | 64.000 | 275 | 91 | 4 | 1 | 273 | 1 | 269 | 2.04e-115 | 333 |
MS.gene67193.t1 | MTR_3g054170 | 49.434 | 265 | 112 | 10 | 6 | 262 | 3 | 253 | 4.17e-67 | 209 |
MS.gene67193.t1 | MTR_1g090973 | 48.399 | 281 | 125 | 13 | 1 | 273 | 1 | 269 | 4.05e-66 | 207 |
MS.gene67193.t1 | MTR_3g054180 | 48.689 | 267 | 113 | 10 | 6 | 262 | 7 | 259 | 4.85e-64 | 202 |
MS.gene67193.t1 | MTR_1g090943 | 46.241 | 266 | 130 | 8 | 1 | 261 | 1 | 258 | 1.03e-61 | 196 |
MS.gene67193.t1 | MTR_0163s0020 | 48.014 | 277 | 125 | 9 | 1 | 270 | 2 | 266 | 1.58e-61 | 196 |
MS.gene67193.t1 | MTR_0684s0020 | 48.014 | 277 | 125 | 9 | 1 | 270 | 1 | 265 | 2.06e-61 | 196 |
MS.gene67193.t1 | MTR_3g054200 | 47.744 | 266 | 115 | 10 | 6 | 262 | 3 | 253 | 4.19e-61 | 194 |
MS.gene67193.t1 | MTR_3g047140 | 47.312 | 279 | 124 | 12 | 1 | 269 | 1 | 266 | 5.32e-59 | 189 |
MS.gene67193.t1 | MTR_1g090960 | 38.596 | 285 | 117 | 9 | 1 | 273 | 1 | 239 | 8.89e-44 | 149 |
MS.gene67193.t1 | MTR_8g023510 | 38.462 | 260 | 133 | 13 | 13 | 259 | 10 | 255 | 1.91e-38 | 136 |
MS.gene67193.t1 | MTR_8g067980 | 39.419 | 241 | 125 | 12 | 36 | 262 | 25 | 258 | 2.86e-35 | 127 |
MS.gene67193.t1 | MTR_8g068050 | 39.098 | 266 | 132 | 13 | 14 | 262 | 20 | 272 | 4.32e-35 | 133 |
MS.gene67193.t1 | MTR_8g068040 | 39.313 | 262 | 118 | 17 | 23 | 262 | 18 | 260 | 3.80e-34 | 124 |
MS.gene67193.t1 | MTR_8g068030 | 37.594 | 266 | 121 | 16 | 23 | 262 | 18 | 264 | 1.87e-33 | 123 |
MS.gene67193.t1 | MTR_5g031120 | 36.594 | 276 | 128 | 15 | 23 | 262 | 14 | 278 | 3.14e-32 | 120 |
MS.gene67193.t1 | MTR_3g463370 | 33.203 | 256 | 112 | 6 | 18 | 261 | 12 | 220 | 1.77e-31 | 117 |
MS.gene67193.t1 | MTR_4g023810 | 36.929 | 241 | 128 | 13 | 30 | 261 | 27 | 252 | 1.01e-29 | 113 |
MS.gene67193.t1 | MTR_5g031090 | 36.255 | 251 | 133 | 12 | 34 | 264 | 32 | 275 | 1.13e-29 | 113 |
MS.gene67193.t1 | MTR_5g031100 | 34.909 | 275 | 133 | 15 | 23 | 262 | 14 | 277 | 1.90e-29 | 112 |
MS.gene67193.t1 | MTR_5g031140 | 34.589 | 292 | 144 | 17 | 5 | 262 | 7 | 285 | 2.35e-28 | 110 |
MS.gene67193.t1 | MTR_8g067990 | 36.486 | 222 | 122 | 11 | 54 | 261 | 41 | 257 | 3.53e-28 | 109 |
MS.gene67193.t1 | MTR_8g067940 | 36.264 | 273 | 137 | 16 | 15 | 261 | 18 | 279 | 9.84e-28 | 108 |
MS.gene67193.t1 | MTR_5g031160 | 33.865 | 251 | 134 | 15 | 34 | 262 | 46 | 286 | 7.38e-27 | 106 |
MS.gene67193.t1 | MTR_4g093080 | 32.824 | 262 | 147 | 12 | 18 | 262 | 9 | 258 | 1.16e-24 | 103 |
MS.gene67193.t1 | MTR_5g031030 | 35.223 | 247 | 137 | 12 | 34 | 264 | 35 | 274 | 1.43e-24 | 99.8 |
MS.gene67193.t1 | MTR_8g067960 | 37.445 | 227 | 117 | 12 | 54 | 264 | 24 | 241 | 6.07e-23 | 94.7 |
MS.gene67193.t1 | MTR_4g093040 | 33.333 | 273 | 152 | 12 | 1 | 256 | 1 | 260 | 1.27e-21 | 94.7 |
MS.gene67193.t1 | MTR_7g115740 | 34.848 | 264 | 129 | 15 | 24 | 262 | 14 | 259 | 1.41e-21 | 94.7 |
MS.gene67193.t1 | MTR_1g014240 | 34.483 | 261 | 134 | 15 | 35 | 272 | 37 | 283 | 1.79e-21 | 94.4 |
MS.gene67193.t1 | MTR_4g093110 | 36.296 | 270 | 114 | 20 | 23 | 262 | 22 | 263 | 1.81e-20 | 91.3 |
MS.gene67193.t1 | MTR_4g093040 | 37.640 | 178 | 93 | 7 | 95 | 256 | 3 | 178 | 3.25e-20 | 90.5 |
MS.gene67193.t1 | MTR_4g056320 | 33.452 | 281 | 133 | 13 | 1 | 271 | 1 | 237 | 5.48e-19 | 84.3 |
MS.gene67193.t1 | MTR_8g067720 | 28.839 | 267 | 152 | 12 | 23 | 270 | 17 | 264 | 6.97e-18 | 83.6 |
MS.gene67193.t1 | MTR_4g093070 | 34.959 | 246 | 128 | 14 | 36 | 262 | 33 | 265 | 1.97e-17 | 82.4 |
MS.gene67193.t1 | MTR_8g067735 | 30.451 | 266 | 150 | 15 | 18 | 262 | 26 | 277 | 5.14e-17 | 81.3 |
MS.gene67193.t1 | MTR_8g067930 | 30.627 | 271 | 157 | 11 | 22 | 273 | 11 | 269 | 7.96e-17 | 80.5 |
MS.gene67193.t1 | MTR_4g093050 | 29.740 | 269 | 149 | 12 | 21 | 263 | 12 | 266 | 2.28e-16 | 79.3 |
MS.gene67193.t1 | MTR_4g056360 | 31.250 | 272 | 131 | 14 | 1 | 259 | 1 | 229 | 8.60e-15 | 72.8 |
MS.gene67193.t1 | MTR_8g067630 | 30.435 | 230 | 126 | 11 | 35 | 245 | 30 | 244 | 2.11e-14 | 73.2 |
MS.gene67193.t1 | MTR_8g067690 | 32.642 | 193 | 114 | 8 | 86 | 262 | 101 | 293 | 4.48e-14 | 72.4 |
MS.gene67193.t1 | MTR_1g048360 | 26.820 | 261 | 158 | 10 | 27 | 261 | 7 | 260 | 1.75e-13 | 70.5 |
MS.gene67193.t1 | MTR_7g115740 | 33.702 | 181 | 93 | 12 | 24 | 191 | 14 | 180 | 4.50e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67193.t1 | AT5G10530 | 32.963 | 270 | 144 | 15 | 33 | 278 | 17 | 273 | 9.06e-20 | 89.4 |
MS.gene67193.t1 | AT5G65600 | 32.051 | 234 | 132 | 10 | 33 | 248 | 33 | 257 | 3.53e-18 | 84.7 |
Find 69 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGATTCCAATATGGTATT+TGG | 0.084014 | 1.2:+57762622 | None:intergenic |
CTATCTGGTGCTTCAGTAAC+TGG | 0.206482 | 1.2:-57762407 | MS.gene67193:CDS |
TCTTTCTCTATCCGAGGTTT+TGG | 0.212325 | 1.2:-57762803 | MS.gene67193:CDS |
CACGGTCTTGAGAGAAATTA+AGG | 0.252048 | 1.2:+57762592 | None:intergenic |
GAAGGAAACGTCTTAAGATT+TGG | 0.308405 | 1.2:+57762998 | None:intergenic |
TAACCCCACCTGTGTACCTT+TGG | 0.329476 | 1.2:-57762865 | MS.gene67193:CDS |
AAGGTTAGGTTTGGTCTATC+TGG | 0.336844 | 1.2:-57762422 | MS.gene67193:CDS |
CTGTGCTTCCCTACAAGGTT+AGG | 0.368255 | 1.2:-57762436 | MS.gene67193:CDS |
ATGATTCCAATATGGTATTT+GGG | 0.369555 | 1.2:+57762623 | None:intergenic |
AACCCCACCTGTGTACCTTT+GGG | 0.384292 | 1.2:-57762864 | MS.gene67193:CDS |
CTTCCCTACAAGGTTAGGTT+TGG | 0.384738 | 1.2:-57762431 | MS.gene67193:CDS |
AATCTTAAGACGTTTCCTTC+TGG | 0.386619 | 1.2:-57762995 | MS.gene67193:CDS |
GTATTTGGGATCATAACTAT+TGG | 0.389135 | 1.2:+57762637 | None:intergenic |
AGTTTACAATGATTCCAATA+TGG | 0.393739 | 1.2:+57762615 | None:intergenic |
TATGATCCCAAATACCATAT+TGG | 0.402198 | 1.2:-57762629 | MS.gene67193:CDS |
AACAACACTCAATGTGTTAG+AGG | 0.403074 | 1.2:+57762514 | None:intergenic |
AGATATTTACCTTCTGAGTT+GGG | 0.405689 | 1.2:+57762722 | None:intergenic |
AACTCAGAAGGTAAATATCT+TGG | 0.407763 | 1.2:-57762719 | MS.gene67193:CDS |
TTTCTCTCAAGACCGTGAAT+TGG | 0.421787 | 1.2:-57762586 | MS.gene67193:CDS |
CAACGCCTCAGACATGTTGC+AGG | 0.423076 | 1.2:-57762324 | MS.gene67193:CDS |
TAGACCAAACCTAACCTTGT+AGG | 0.424009 | 1.2:+57762427 | None:intergenic |
CTTAAGATTTGGAGTGAACT+TGG | 0.428673 | 1.2:+57763009 | None:intergenic |
TTGCACACGAAATCCATTCA+TGG | 0.429323 | 1.2:-57762382 | MS.gene67193:CDS |
AAGATATTTACCTTCTGAGT+TGG | 0.429951 | 1.2:+57762721 | None:intergenic |
GACAAAGCTAGCAACATTGC+CGG | 0.444134 | 1.2:+57762835 | None:intergenic |
GAAAACTGTGCTTCCCTACA+AGG | 0.451857 | 1.2:-57762441 | MS.gene67193:CDS |
GATCATAACTATTGGCATAA+AGG | 0.458277 | 1.2:+57762645 | None:intergenic |
GGTGGAATCACAGTGTTTAG+TGG | 0.461333 | 1.2:+57762743 | None:intergenic |
CTTGGTGAAATTGAAGGAAA+GGG | 0.464927 | 1.2:+57763027 | None:intergenic |
ATGCTCAGACGTTAAACAAT+GGG | 0.469712 | 1.2:-57762955 | MS.gene67193:CDS |
AAGTGGTCAATGACCATGAA+TGG | 0.471584 | 1.2:+57762369 | None:intergenic |
CCTTCTGGTATAGCCTTCCA+AGG | 0.477880 | 1.2:-57762980 | MS.gene67193:CDS |
GAGCATATGAGACTTCCTTC+TGG | 0.479629 | 1.2:-57762917 | MS.gene67193:CDS |
ACGCTCAAATTGCCAATTCA+CGG | 0.492234 | 1.2:+57762574 | None:intergenic |
CAAATCAACGATTTGAGCAA+TGG | 0.492987 | 1.2:+57762463 | None:intergenic |
GTTAAGATACGACCAGTACT+TGG | 0.494358 | 1.2:+57762884 | None:intergenic |
GTTGAACACCACCAATGGAT+TGG | 0.500638 | 1.2:-57762780 | MS.gene67193:CDS |
AGTGAACTTGGTGAAATTGA+AGG | 0.516116 | 1.2:+57763021 | None:intergenic |
CCTAAAACAAGTTCATGAGT+TGG | 0.516836 | 1.2:+57763106 | None:intergenic |
CTTCTGGTATAGCCTTCCAA+GGG | 0.517502 | 1.2:-57762979 | MS.gene67193:CDS |
TTTGGGTTGAACACCACCAA+TGG | 0.521121 | 1.2:-57762785 | MS.gene67193:CDS |
AGACCAAACCTAACCTTGTA+GGG | 0.535942 | 1.2:+57762428 | None:intergenic |
ACTTGGTGAAATTGAAGGAA+AGG | 0.544189 | 1.2:+57763026 | None:intergenic |
ACCTCGGATAGAGAAAGAAA+AGG | 0.546062 | 1.2:+57762808 | None:intergenic |
TTAACGTCTGAGCATCCCCT+TGG | 0.548177 | 1.2:+57762963 | None:intergenic |
TATTTACCTTCTGAGTTGGG+TGG | 0.549853 | 1.2:+57762725 | None:intergenic |
CATTGCCGGCATTGTCCCAA+AGG | 0.555239 | 1.2:+57762849 | None:intergenic |
GTGAATTGGCAATTTGAGCG+TGG | 0.558971 | 1.2:-57762572 | MS.gene67193:CDS |
AAAGAAGACCAATCCATTGG+TGG | 0.560701 | 1.2:+57762772 | None:intergenic |
GTGTACCTTTGGGACAATGC+CGG | 0.562788 | 1.2:-57762854 | MS.gene67193:CDS |
GTTGTTGTCACTTATGCCAA+TGG | 0.563705 | 1.2:-57762497 | MS.gene67193:CDS |
GGTACAACTAAACCAAGTAC+TGG | 0.564730 | 1.2:-57762896 | MS.gene67193:CDS |
TGAATTGGCAATTTGAGCGT+GGG | 0.572247 | 1.2:-57762571 | MS.gene67193:CDS |
CGTCTGAGCATCCCCTTGGA+AGG | 0.581798 | 1.2:+57762967 | None:intergenic |
TGTCCCAAAGGTACACAGGT+GGG | 0.581883 | 1.2:+57762861 | None:intergenic |
AATAAAGAAGACCAATCCAT+TGG | 0.585507 | 1.2:+57762769 | None:intergenic |
GTCCCAAAGGTACACAGGTG+GGG | 0.598027 | 1.2:+57762862 | None:intergenic |
GTGATTCCACCCAACTCAGA+AGG | 0.612160 | 1.2:-57762731 | MS.gene67193:CDS |
CTTGGTTTAGTTGTACCAGA+AGG | 0.612934 | 1.2:+57762902 | None:intergenic |
CCTTGGAAGGCTATACCAGA+AGG | 0.616936 | 1.2:+57762980 | None:intergenic |
GCATTGTCCCAAAGGTACAC+AGG | 0.624995 | 1.2:+57762857 | None:intergenic |
CATGAGTTGGAAGATTTGTG+CGG | 0.625970 | 1.2:+57763119 | None:intergenic |
ATTTGTGCGGTAAAATGCCA+TGG | 0.629153 | 1.2:+57763132 | None:intergenic |
GATGCTCAGACGTTAAACAA+TGG | 0.639722 | 1.2:-57762956 | MS.gene67193:CDS |
TATAGCCTGCAACATGTCTG+AGG | 0.643802 | 1.2:+57762319 | None:intergenic |
TTGTCCCAAAGGTACACAGG+TGG | 0.671736 | 1.2:+57762860 | None:intergenic |
TGGTGTTCAACCCAAAACCT+CGG | 0.681598 | 1.2:+57762792 | None:intergenic |
TTCTGGTATAGCCTTCCAAG+GGG | 0.682421 | 1.2:-57762978 | MS.gene67193:CDS |
TGCTCAGACGTTAAACAATG+GGG | 0.710854 | 1.2:-57762954 | MS.gene67193:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTCTTACAATAATTTTGT+TGG | - | chr1.2:57762766-57762785 | MS.gene67193:CDS | 20.0% |
! | AATGATTCCAATATGGTATT+TGG | + | chr1.2:57762827-57762846 | None:intergenic | 25.0% |
! | AATGGTAGAAAAATTTCCAT+TGG | + | chr1.2:57762968-57762987 | None:intergenic | 25.0% |
! | AGTTTACAATGATTCCAATA+TGG | + | chr1.2:57762834-57762853 | None:intergenic | 25.0% |
! | ATGATTCCAATATGGTATTT+GGG | + | chr1.2:57762826-57762845 | None:intergenic | 25.0% |
AACTCAGAAGGTAAATATCT+TGG | - | chr1.2:57762727-57762746 | MS.gene67193:CDS | 30.0% | |
AAGATATTTACCTTCTGAGT+TGG | + | chr1.2:57762728-57762747 | None:intergenic | 30.0% | |
AATAAAGAAGACCAATCCAT+TGG | + | chr1.2:57762680-57762699 | None:intergenic | 30.0% | |
AGATATTTACCTTCTGAGTT+GGG | + | chr1.2:57762727-57762746 | None:intergenic | 30.0% | |
GATCATAACTATTGGCATAA+AGG | + | chr1.2:57762804-57762823 | None:intergenic | 30.0% | |
TATGATCCCAAATACCATAT+TGG | - | chr1.2:57762817-57762836 | MS.gene67193:CDS | 30.0% | |
! | GTATTTGGGATCATAACTAT+TGG | + | chr1.2:57762812-57762831 | None:intergenic | 30.0% |
AACAACACTCAATGTGTTAG+AGG | + | chr1.2:57762935-57762954 | None:intergenic | 35.0% | |
AATCTTAAGACGTTTCCTTC+TGG | - | chr1.2:57762451-57762470 | MS.gene67193:CDS | 35.0% | |
ATGCTCAGACGTTAAACAAT+GGG | - | chr1.2:57762491-57762510 | MS.gene67193:CDS | 35.0% | |
CAAATCAACGATTTGAGCAA+TGG | + | chr1.2:57762986-57763005 | None:intergenic | 35.0% | |
CCTAAAACAAGTTCATGAGT+TGG | + | chr1.2:57762343-57762362 | None:intergenic | 35.0% | |
CTTGGTGAAATTGAAGGAAA+GGG | + | chr1.2:57762422-57762441 | None:intergenic | 35.0% | |
GAAGGAAACGTCTTAAGATT+TGG | + | chr1.2:57762451-57762470 | None:intergenic | 35.0% | |
! | ACTTGGTGAAATTGAAGGAA+AGG | + | chr1.2:57762423-57762442 | None:intergenic | 35.0% |
! | AGTGAACTTGGTGAAATTGA+AGG | + | chr1.2:57762428-57762447 | None:intergenic | 35.0% |
! | CTTAAGATTTGGAGTGAACT+TGG | + | chr1.2:57762440-57762459 | None:intergenic | 35.0% |
!! | CCAACTCATGAACTTGTTTT+AGG | - | chr1.2:57762340-57762359 | MS.gene67193:CDS | 35.0% |
!!! | CGTTGTTTTCAAGTTTGAAG+TGG | + | chr1.2:57763097-57763116 | None:intergenic | 35.0% |
AAAGAAGACCAATCCATTGG+TGG | + | chr1.2:57762677-57762696 | None:intergenic | 40.0% | |
AAGTGGTCAATGACCATGAA+TGG | + | chr1.2:57763080-57763099 | None:intergenic | 40.0% | |
ACCTCGGATAGAGAAAGAAA+AGG | + | chr1.2:57762641-57762660 | None:intergenic | 40.0% | |
ACGCTCAAATTGCCAATTCA+CGG | + | chr1.2:57762875-57762894 | None:intergenic | 40.0% | |
AGACCAAACCTAACCTTGTA+GGG | + | chr1.2:57763021-57763040 | None:intergenic | 40.0% | |
CACGGTCTTGAGAGAAATTA+AGG | + | chr1.2:57762857-57762876 | None:intergenic | 40.0% | |
CTTGGTTTAGTTGTACCAGA+AGG | + | chr1.2:57762547-57762566 | None:intergenic | 40.0% | |
GATGCTCAGACGTTAAACAA+TGG | - | chr1.2:57762490-57762509 | MS.gene67193:CDS | 40.0% | |
GGTACAACTAAACCAAGTAC+TGG | - | chr1.2:57762550-57762569 | MS.gene67193:CDS | 40.0% | |
GTTAAGATACGACCAGTACT+TGG | + | chr1.2:57762565-57762584 | None:intergenic | 40.0% | |
TAGACCAAACCTAACCTTGT+AGG | + | chr1.2:57763022-57763041 | None:intergenic | 40.0% | |
TGAATTGGCAATTTGAGCGT+GGG | - | chr1.2:57762875-57762894 | MS.gene67193:CDS | 40.0% | |
TGCTCAGACGTTAAACAATG+GGG | - | chr1.2:57762492-57762511 | MS.gene67193:CDS | 40.0% | |
TTGCACACGAAATCCATTCA+TGG | - | chr1.2:57763064-57763083 | MS.gene67193:CDS | 40.0% | |
TTTCTCTCAAGACCGTGAAT+TGG | - | chr1.2:57762860-57762879 | MS.gene67193:CDS | 40.0% | |
! | AAGGTTAGGTTTGGTCTATC+TGG | - | chr1.2:57763024-57763043 | MS.gene67193:CDS | 40.0% |
! | CATGAGTTGGAAGATTTGTG+CGG | + | chr1.2:57762330-57762349 | None:intergenic | 40.0% |
! | CTTTCTCTATCCGAGGTTTT+GGG | - | chr1.2:57762644-57762663 | MS.gene67193:CDS | 40.0% |
! | GTTGTTGTCACTTATGCCAA+TGG | - | chr1.2:57762949-57762968 | MS.gene67193:CDS | 40.0% |
! | TATTTACCTTCTGAGTTGGG+TGG | + | chr1.2:57762724-57762743 | None:intergenic | 40.0% |
! | TCCTTTTCTTTCTCTATCCG+AGG | - | chr1.2:57762637-57762656 | MS.gene67193:CDS | 40.0% |
! | TCTTTCTCTATCCGAGGTTT+TGG | - | chr1.2:57762643-57762662 | MS.gene67193:CDS | 40.0% |
CTATCTGGTGCTTCAGTAAC+TGG | - | chr1.2:57763039-57763058 | MS.gene67193:CDS | 45.0% | |
CTTCCCTACAAGGTTAGGTT+TGG | - | chr1.2:57763015-57763034 | MS.gene67193:CDS | 45.0% | |
CTTCTGGTATAGCCTTCCAA+GGG | - | chr1.2:57762467-57762486 | MS.gene67193:CDS | 45.0% | |
GAAAACTGTGCTTCCCTACA+AGG | - | chr1.2:57763005-57763024 | MS.gene67193:CDS | 45.0% | |
GACAAAGCTAGCAACATTGC+CGG | + | chr1.2:57762614-57762633 | None:intergenic | 45.0% | |
GAGCATATGAGACTTCCTTC+TGG | - | chr1.2:57762529-57762548 | MS.gene67193:CDS | 45.0% | |
GGTGGAATCACAGTGTTTAG+TGG | + | chr1.2:57762706-57762725 | None:intergenic | 45.0% | |
GTGAATTGGCAATTTGAGCG+TGG | - | chr1.2:57762874-57762893 | MS.gene67193:CDS | 45.0% | |
GTTGAACACCACCAATGGAT+TGG | - | chr1.2:57762666-57762685 | MS.gene67193:CDS | 45.0% | |
TATAGCCTGCAACATGTCTG+AGG | + | chr1.2:57763130-57763149 | None:intergenic | 45.0% | |
TGGTGTTCAACCCAAAACCT+CGG | + | chr1.2:57762657-57762676 | None:intergenic | 45.0% | |
TTCTGGTATAGCCTTCCAAG+GGG | - | chr1.2:57762468-57762487 | MS.gene67193:CDS | 45.0% | |
!! | TTTGGGTTGAACACCACCAA+TGG | - | chr1.2:57762661-57762680 | MS.gene67193:CDS | 45.0% |
AACCCCACCTGTGTACCTTT+GGG | - | chr1.2:57762582-57762601 | MS.gene67193:CDS | 50.0% | |
CCTTCTGGTATAGCCTTCCA+AGG | - | chr1.2:57762466-57762485 | MS.gene67193:CDS | 50.0% | |
CCTTGGAAGGCTATACCAGA+AGG | + | chr1.2:57762469-57762488 | None:intergenic | 50.0% | |
CTGTGCTTCCCTACAAGGTT+AGG | - | chr1.2:57763010-57763029 | MS.gene67193:CDS | 50.0% | |
GTGATTCCACCCAACTCAGA+AGG | - | chr1.2:57762715-57762734 | MS.gene67193:CDS | 50.0% | |
TAACCCCACCTGTGTACCTT+TGG | - | chr1.2:57762581-57762600 | MS.gene67193:CDS | 50.0% | |
TTAACGTCTGAGCATCCCCT+TGG | + | chr1.2:57762486-57762505 | None:intergenic | 50.0% | |
! | GCATTGTCCCAAAGGTACAC+AGG | + | chr1.2:57762592-57762611 | None:intergenic | 50.0% |
! | TGTCCCAAAGGTACACAGGT+GGG | + | chr1.2:57762588-57762607 | None:intergenic | 50.0% |
! | TTGTCCCAAAGGTACACAGG+TGG | + | chr1.2:57762589-57762608 | None:intergenic | 50.0% |
!! | GTGTACCTTTGGGACAATGC+CGG | - | chr1.2:57762592-57762611 | MS.gene67193:CDS | 50.0% |
CAACGCCTCAGACATGTTGC+AGG | - | chr1.2:57763122-57763141 | MS.gene67193:CDS | 55.0% | |
CATTGCCGGCATTGTCCCAA+AGG | + | chr1.2:57762600-57762619 | None:intergenic | 55.0% | |
! | GTCCCAAAGGTACACAGGTG+GGG | + | chr1.2:57762587-57762606 | None:intergenic | 55.0% |
CGTCTGAGCATCCCCTTGGA+AGG | + | chr1.2:57762482-57762501 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 57762316 | 57763152 | 57762316 | ID=MS.gene67193 |
chr1.2 | mRNA | 57762316 | 57763152 | 57762316 | ID=MS.gene67193.t1;Parent=MS.gene67193 |
chr1.2 | exon | 57762316 | 57763152 | 57762316 | ID=MS.gene67193.t1.exon1;Parent=MS.gene67193.t1 |
chr1.2 | CDS | 57762316 | 57763152 | 57762316 | ID=cds.MS.gene67193.t1;Parent=MS.gene67193.t1 |
Gene Sequence |
Protein sequence |