Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051201.t1 | XP_013463481.1 | 85.2 | 332 | 43 | 4 | 1 | 329 | 1 | 329 | 1.20E-160 | 575.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051201.t1 | P23472 | 50.0 | 302 | 141 | 7 | 4 | 300 | 3 | 299 | 2.9e-78 | 293.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051201.t1 | A0A072V7A7 | 85.2 | 332 | 43 | 4 | 1 | 329 | 1 | 329 | 8.8e-161 | 575.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene051201 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene051201 | 0.839037 | 2.01E-57 | -1.69E-46 |
| MS.gene050414 | MS.gene051201 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene051279 | 0.821441 | 4.03E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene052463 | 0.81145 | 6.96E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene052989 | 0.848498 | 5.90E-60 | -1.69E-46 |
| MS.gene051201 | MS.gene054178 | 0.8105 | 1.12E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene055229 | 0.816442 | 5.52E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene056082 | 0.818051 | 2.40E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene05686 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene057102 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene061564 | 0.838645 | 2.54E-57 | -1.69E-46 |
| MS.gene051201 | MS.gene061729 | 0.826078 | 3.30E-54 | -1.69E-46 |
| MS.gene051201 | MS.gene062183 | 0.820096 | 8.21E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene062184 | 0.813099 | 3.04E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene063478 | 0.827062 | 1.93E-54 | -1.69E-46 |
| MS.gene051201 | MS.gene064243 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene06469 | 0.803403 | 3.54E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene065055 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene066072 | 0.869447 | 3.07E-66 | -1.69E-46 |
| MS.gene051201 | MS.gene066196 | 0.837078 | 6.43E-57 | -1.69E-46 |
| MS.gene051201 | MS.gene066313 | 0.811604 | 6.44E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene066335 | 0.828274 | 9.84E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene068383 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene070301 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene07073 | 0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene071974 | 0.814718 | 1.34E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene072685 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene072887 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene07486 | 0.813787 | 2.14E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene07723 | 0.821928 | 3.11E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene07876 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene09600 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene09933 | 0.820405 | 6.98E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene20298 | 0.812945 | 3.28E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene20582 | 0.809649 | 1.70E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene22419 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene22522 | 0.983413 | 1.12E-157 | -1.69E-46 |
| MS.gene051201 | MS.gene25269 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene27646 | -0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene28611 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene29631 | 0.809194 | 2.13E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene30350 | 0.804468 | 2.13E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene32182 | 0.800547 | 1.37E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene32636 | 0.830372 | 3.05E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene32688 | 0.83455 | 2.81E-56 | -1.69E-46 |
| MS.gene051201 | MS.gene32861 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene33059 | 0.810377 | 1.19E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene33332 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene33511 | 0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene34266 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene34850 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene35530 | 0.83029 | 3.19E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene36334 | 0.801327 | 9.49E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene38679 | 0.831563 | 1.56E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene39046 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene39406 | 0.80134 | 9.43E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene40093 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene40871 | 0.807776 | 4.28E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene42653 | 0.840692 | 7.46E-58 | -1.69E-46 |
| MS.gene051201 | MS.gene44340 | 0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene44341 | 0.801234 | 9.91E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene45281 | 0.823927 | 1.06E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene46048 | 0.805319 | 1.41E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene47990 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene49613 | 0.817802 | 2.73E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene49642 | 0.814607 | 1.41E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene52849 | 0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene54731 | 0.808911 | 2.45E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene54824 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene54967 | 0.801891 | 7.27E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene55818 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene56169 | 0.816363 | 5.75E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene57576 | 0.811035 | 8.56E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene59241 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene59242 | 0.830552 | 2.75E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene60827 | 0.800422 | 1.45E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene60898 | 0.805275 | 1.44E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene61490 | 0.812766 | 3.59E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene62491 | 0.815794 | 7.70E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene64934 | 0.831748 | 1.40E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene66786 | 0.81212 | 4.97E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene66813 | 0.80884 | 2.54E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene67067 | 0.828713 | 7.72E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene67193 | 0.812405 | 4.31E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene67631 | 0.813774 | 2.16E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene68543 | 0.828603 | 8.20E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene72064 | 0.83085 | 2.33E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene73577 | 0.824402 | 8.23E-54 | -1.69E-46 |
| MS.gene051201 | MS.gene74537 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene74606 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene76227 | 0.832165 | 1.10E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene76276 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene76314 | 0.834988 | 2.18E-56 | -1.69E-46 |
| MS.gene051201 | MS.gene76518 | 0.806184 | 9.31E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene79105 | 0.810843 | 9.42E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene80201 | 0.8408 | 6.99E-58 | -1.69E-46 |
| MS.gene051201 | MS.gene80631 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene80687 | 0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene80724 | 0.808465 | 3.06E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene80729 | 0.827778 | 1.30E-54 | -1.69E-46 |
| MS.gene051201 | MS.gene80732 | 0.800033 | 1.74E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene82318 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene83630 | 0.96315 | 9.84E-122 | -1.69E-46 |
| MS.gene051201 | MS.gene84737 | 0.81432 | 1.64E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene85098 | 0.823397 | 1.42E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene85133 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene86512 | 0.810068 | 1.39E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene86799 | 0.812793 | 3.55E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene89985 | 0.814553 | 1.45E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene90260 | 0.819831 | 9.45E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene90591 | 0.803923 | 2.76E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene90880 | 0.810378 | 1.19E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene91820 | 0.803483 | 3.41E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene95712 | 0.810627 | 1.05E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene95728 | 0.802484 | 5.49E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene95778 | 0.802014 | 6.86E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene96792 | 0.822142 | 2.77E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene97017 | 0.802148 | 6.44E-49 | -1.69E-46 |
| MS.gene051201 | MS.gene97647 | 0.825606 | 4.28E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051201.t1 | MTR_2g040830 | 85.241 | 332 | 43 | 4 | 1 | 329 | 1 | 329 | 0.0 | 558 |
| MS.gene051201.t1 | MTR_2g040690 | 82.335 | 334 | 51 | 5 | 1 | 329 | 1 | 331 | 0.0 | 538 |
| MS.gene051201.t1 | MTR_2g040740 | 81.928 | 332 | 53 | 6 | 1 | 329 | 1 | 328 | 0.0 | 518 |
| MS.gene051201.t1 | MTR_2g040650 | 82.424 | 330 | 52 | 5 | 1 | 329 | 1 | 325 | 0.0 | 506 |
| MS.gene051201.t1 | MTR_5g043550 | 52.843 | 299 | 125 | 8 | 10 | 300 | 4 | 294 | 6.37e-97 | 288 |
| MS.gene051201.t1 | MTR_1g099310 | 51.475 | 305 | 134 | 8 | 1 | 300 | 1 | 296 | 2.04e-96 | 287 |
| MS.gene051201.t1 | MTR_0027s0260 | 49.013 | 304 | 140 | 8 | 5 | 300 | 2 | 298 | 8.77e-94 | 281 |
| MS.gene051201.t1 | MTR_8g055940 | 47.386 | 306 | 146 | 8 | 1 | 300 | 1 | 297 | 1.56e-90 | 273 |
| MS.gene051201.t1 | MTR_1g099290 | 48.973 | 292 | 138 | 6 | 11 | 297 | 10 | 295 | 1.21e-87 | 274 |
| MS.gene051201.t1 | MTR_1g099320 | 51.661 | 271 | 120 | 7 | 23 | 287 | 20 | 285 | 1.36e-86 | 262 |
| MS.gene051201.t1 | MTR_2g040880 | 83.673 | 147 | 23 | 1 | 183 | 329 | 1 | 146 | 1.40e-85 | 254 |
| MS.gene051201.t1 | MTR_7g116850 | 47.138 | 297 | 145 | 8 | 11 | 300 | 35 | 326 | 3.05e-80 | 247 |
| MS.gene051201.t1 | MTR_8g467650 | 47.508 | 301 | 142 | 10 | 8 | 300 | 6 | 298 | 1.41e-79 | 244 |
| MS.gene051201.t1 | MTR_7g116350 | 45.791 | 297 | 137 | 7 | 11 | 302 | 9 | 286 | 1.64e-79 | 258 |
| MS.gene051201.t1 | MTR_1g099350 | 47.761 | 268 | 127 | 7 | 24 | 286 | 19 | 278 | 3.63e-78 | 241 |
| MS.gene051201.t1 | MTR_2g102020 | 46.075 | 293 | 140 | 8 | 7 | 286 | 13 | 300 | 6.06e-77 | 239 |
| MS.gene051201.t1 | MTR_6g023340 | 45.105 | 286 | 142 | 9 | 24 | 300 | 23 | 302 | 4.77e-74 | 231 |
| MS.gene051201.t1 | MTR_2g040870 | 70.253 | 158 | 43 | 2 | 17 | 171 | 13 | 169 | 4.05e-72 | 221 |
| MS.gene051201.t1 | MTR_2g040900 | 59.355 | 155 | 61 | 2 | 176 | 329 | 17 | 170 | 3.32e-57 | 183 |
| MS.gene051201.t1 | MTR_2g040890 | 55.367 | 177 | 70 | 5 | 1 | 171 | 1 | 174 | 2.18e-56 | 181 |
| MS.gene051201.t1 | MTR_2g040850 | 53.595 | 153 | 57 | 4 | 1 | 142 | 1 | 150 | 2.35e-42 | 147 |
| MS.gene051201.t1 | MTR_2g040850 | 50.794 | 126 | 53 | 4 | 198 | 320 | 122 | 241 | 1.26e-26 | 105 |
| MS.gene051201.t1 | MTR_4g077310 | 42.105 | 95 | 49 | 3 | 204 | 298 | 3 | 91 | 5.47e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051201.t1 | AT5G24090 | 45.875 | 303 | 154 | 7 | 3 | 300 | 5 | 302 | 1.47e-88 | 268 |
Find 71 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTTTCCTCAATGTCTT+TGG | 0.217357 | 2.3:+48991100 | MS.gene051201:CDS |
| ATAAAACACTGTCAAGAAAA+AGG | 0.225882 | 2.3:+48991202 | MS.gene051201:CDS |
| CCCATGAAAACGGTATTATT+TGG | 0.251275 | 2.3:-48993653 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 2.3:+48991310 | MS.gene051201:CDS |
| ATAGTTGGAAGTTGGTTTAA+TGG | 0.284816 | 2.3:-48993753 | None:intergenic |
| ACCAAATGATCTCATTTCTA+AGG | 0.290925 | 2.3:+48993721 | MS.gene051201:CDS |
| TTACTTTCCCTCAGAGCATT+AGG | 0.302991 | 2.3:+48991235 | MS.gene051201:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 2.3:+48991377 | MS.gene051201:CDS |
| ATTAAACCAACTTCCAACTA+TGG | 0.306183 | 2.3:+48993755 | MS.gene051201:CDS |
| GTTAAAATCAACACCATCTA+AGG | 0.310593 | 2.3:-48991350 | None:intergenic |
| ATGGTGGCATTGCCGTCTAC+TGG | 0.329897 | 2.3:+48991011 | MS.gene051201:CDS |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.333989 | 2.3:+48991337 | MS.gene051201:CDS |
| CTCTATACTAACTTTCTTAG+TGG | 0.345832 | 2.3:+48991301 | MS.gene051201:CDS |
| AGCACAAAATGGATACAAAA+AGG | 0.354708 | 2.3:+48990924 | None:intergenic |
| TAATTTCGAGATTGTACTCT+TGG | 0.374143 | 2.3:+48991081 | MS.gene051201:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.380969 | 2.3:+48993512 | MS.gene051201:CDS |
| ACCTTAGAAATGAGATCATT+TGG | 0.385560 | 2.3:-48993722 | None:intergenic |
| CTATGGAGGAATTATGCTTT+GGG | 0.391332 | 2.3:+48993772 | MS.gene051201:CDS |
| GTAATCTGGCATATAACATT+GGG | 0.392231 | 2.3:-48993486 | None:intergenic |
| GCGTATAATATGATTTAATT+CGG | 0.393756 | 2.3:-48993932 | None:intergenic |
| ACTATGGAGGAATTATGCTT+TGG | 0.402308 | 2.3:+48993771 | MS.gene051201:CDS |
| TGGTGGCATTGCCGTCTACT+GGG | 0.405455 | 2.3:+48991012 | MS.gene051201:CDS |
| GCTTTCCTCAATGTCTTTGG+AGG | 0.413044 | 2.3:+48991103 | MS.gene051201:CDS |
| TGATTTGCAAAGTTCAAACT+TGG | 0.417925 | 2.3:-48991136 | None:intergenic |
| TAGCTTCTTCTGGTGAGCTA+AGG | 0.426254 | 2.3:-48991261 | None:intergenic |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 2.3:+48993820 | MS.gene051201:CDS |
| CTACATTGCTCTTAAAATCA+TGG | 0.429928 | 2.3:+48993606 | MS.gene051201:CDS |
| TTCCTCAATGTCTTTGGAGG+AGG | 0.446588 | 2.3:+48991106 | MS.gene051201:CDS |
| AGCTTCTTCTGGTGAGCTAA+GGG | 0.448193 | 2.3:-48991260 | None:intergenic |
| TGGGATAGATTTCATGATGT+TGG | 0.451538 | 2.3:+48993791 | MS.gene051201:CDS |
| CAAGTTTCTGAGGCAATAGC+TGG | 0.454724 | 2.3:+48993878 | MS.gene051201:CDS |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 2.3:+48991422 | MS.gene051201:CDS |
| AAGCATAATTCCTCCATAGT+TGG | 0.460777 | 2.3:-48993768 | None:intergenic |
| TCTTAAAATCATGGAATGCT+TGG | 0.464778 | 2.3:+48993615 | MS.gene051201:CDS |
| ATTCCTCCATAGTTGGAAGT+TGG | 0.484513 | 2.3:-48993761 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 2.3:-48991417 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 2.3:-48993500 | None:intergenic |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 2.3:+48991392 | MS.gene051201:CDS |
| TTGGAAGTTGGTTTAATGGA+AGG | 0.522478 | 2.3:-48993749 | None:intergenic |
| AGTAATCTGGCATATAACAT+TGG | 0.524590 | 2.3:-48993487 | None:intergenic |
| GGAGCTGCATCAGGTGATGC+TGG | 0.526731 | 2.3:-48993680 | None:intergenic |
| CACTAAGAAAGTTAGTATAG+AGG | 0.529347 | 2.3:-48991300 | None:intergenic |
| TGCTGGTAGTCCCATGAAAA+CGG | 0.529775 | 2.3:-48993663 | None:intergenic |
| CCACCACTAGGAGCTGCATC+AGG | 0.548590 | 2.3:-48993689 | None:intergenic |
| GGCAATAGCTGGATGTATCT+CGG | 0.551848 | 2.3:+48993889 | MS.gene051201:CDS |
| TATGATTTAATTCGGAAACA+TGG | 0.564143 | 2.3:-48993924 | None:intergenic |
| GATTTGCAAAGTTCAAACTT+GGG | 0.564533 | 2.3:-48991135 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 2.3:+48991319 | MS.gene051201:CDS |
| AAGGGCTCCTAATGCTCTGA+GGG | 0.572834 | 2.3:-48991242 | None:intergenic |
| TTGAACTTTGCAAATCATTG+TGG | 0.576615 | 2.3:+48991142 | MS.gene051201:CDS |
| TTCCTCCTCCAAAGACATTG+AGG | 0.584718 | 2.3:-48991108 | None:intergenic |
| TGATGATGCTTTGATAGTGA+AGG | 0.585896 | 2.3:-48990984 | None:intergenic |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 2.3:+48991393 | MS.gene051201:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 2.3:+48991378 | MS.gene051201:CDS |
| TGGGGCCAAAACGTAAAAGA+AGG | 0.591748 | 2.3:+48991031 | MS.gene051201:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 2.3:-48991405 | None:intergenic |
| ATATTGTCAAGACTAACAAA+AGG | 0.600315 | 2.3:-48990958 | None:intergenic |
| TTAGAAATGAGATCATTTGG+TGG | 0.607316 | 2.3:-48993719 | None:intergenic |
| ATCAAAGCATCATCAAGTGA+TGG | 0.610130 | 2.3:+48990992 | MS.gene051201:CDS |
| TTGACATCAACATGTGACAC+TGG | 0.615620 | 2.3:+48991058 | MS.gene051201:CDS |
| GATGATGCTTTGATAGTGAA+GGG | 0.636457 | 2.3:-48990983 | None:intergenic |
| AAACCAACTTCCAACTATGG+AGG | 0.642148 | 2.3:+48993758 | MS.gene051201:CDS |
| AAAGCATCATCAAGTGATGG+TGG | 0.646449 | 2.3:+48990995 | MS.gene051201:CDS |
| TCACCTGATGCAGCTCCTAG+TGG | 0.649095 | 2.3:+48993686 | MS.gene051201:CDS |
| TAAGGGCTCCTAATGCTCTG+AGG | 0.652053 | 2.3:-48991243 | None:intergenic |
| CCTGATGCAGCTCCTAGTGG+TGG | 0.652514 | 2.3:+48993689 | MS.gene051201:CDS |
| GGTGGCATTGCCGTCTACTG+GGG | 0.654303 | 2.3:+48991013 | MS.gene051201:CDS |
| AGTGTCACATGTTGATGTCA+AGG | 0.656681 | 2.3:-48991056 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.690618 | 2.3:-48993701 | None:intergenic |
| TAATCTGGCATATAACATTG+GGG | 0.697221 | 2.3:-48993485 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 2.3:-48991334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAGAAAATATAATAT+AGG | + | chr2.3:48991979-48991998 | MS.gene051201:intron | 10.0% |
| !! | TAATAAATATTTACCATTTA+TGG | + | chr2.3:48993096-48993115 | MS.gene051201:intron | 10.0% |
| !!! | TATTTTTCTTTGAAAAAATA+TGG | - | chr2.3:48991872-48991891 | None:intergenic | 10.0% |
| !! | ATACTTATGTTACAAATATT+TGG | - | chr2.3:48992549-48992568 | None:intergenic | 15.0% |
| !! | TACTTATGTTACAAATATTT+GGG | - | chr2.3:48992548-48992567 | None:intergenic | 15.0% |
| !!! | GAAATGATGTTTTTTTTTAT+GGG | - | chr2.3:48993301-48993320 | None:intergenic | 15.0% |
| !!! | GGAAAATACTTTTTTTTTTA+GGG | - | chr2.3:48992583-48992602 | None:intergenic | 15.0% |
| !!! | TATCCATTCTAAAATTATTA+TGG | - | chr2.3:48992304-48992323 | None:intergenic | 15.0% |
| !!! | TGAAATGATGTTTTTTTTTA+TGG | - | chr2.3:48993302-48993321 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGATTTATGAC+AGG | - | chr2.3:48993219-48993238 | None:intergenic | 15.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | + | chr2.3:48991876-48991895 | MS.gene051201:intron | 15.0% |
| !!! | TTTTTTTTATCATATTGACA+TGG | - | chr2.3:48993578-48993597 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATCTCTTGC+AGG | + | chr2.3:48993441-48993460 | MS.gene051201:intron | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | - | chr2.3:48991860-48991879 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | + | chr2.3:48991927-48991946 | MS.gene051201:intron | 20.0% |
| !! | AGCATAATGCTATAATATAT+TGG | + | chr2.3:48993151-48993170 | MS.gene051201:intron | 20.0% |
| !! | AGTATTATATGAACTAGTAT+TGG | + | chr2.3:48992374-48992393 | MS.gene051201:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | - | chr2.3:48991964-48991983 | None:intergenic | 20.0% |
| !! | ATCTTTAAATTAAAGTGTAC+CGG | + | chr2.3:48993189-48993208 | MS.gene051201:intron | 20.0% |
| !! | GCATAATGCTATAATATATT+GGG | + | chr2.3:48993152-48993171 | MS.gene051201:intron | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | - | chr2.3:48991716-48991735 | None:intergenic | 20.0% |
| !! | TAGAATGGATATAGTAAAAA+AGG | + | chr2.3:48992313-48992332 | MS.gene051201:intron | 20.0% |
| !!! | AAAAGGTTGATTTGTTAATT+AGG | - | chr2.3:48993399-48993418 | None:intergenic | 20.0% |
| !!! | AAAGGTTGATTTGTTAATTA+GGG | - | chr2.3:48993398-48993417 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTTTTTTGAGAG+AGG | - | chr2.3:48993436-48993455 | None:intergenic | 20.0% |
| !!! | CGGAAAATACTTTTTTTTTT+AGG | - | chr2.3:48992584-48992603 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTAGGGAAATA+CGG | - | chr2.3:48992575-48992594 | None:intergenic | 20.0% |
| !!! | TGCTTACTTTTATTTATGTT+TGG | - | chr2.3:48992141-48992160 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAGAAAGTAGAA+TGG | + | chr2.3:48992741-48992760 | MS.gene051201:intron | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | - | chr2.3:48991597-48991616 | None:intergenic | 20.0% |
| ! | ATAAAACACTGTCAAGAAAA+AGG | + | chr2.3:48991202-48991221 | MS.gene051201:CDS | 25.0% |
| ! | ATATTGTCAAGACTAACAAA+AGG | - | chr2.3:48990961-48990980 | None:intergenic | 25.0% |
| ! | TAAAACACTGTCAAGAAAAA+GGG | + | chr2.3:48991203-48991222 | MS.gene051201:CDS | 25.0% |
| ! | TAATATATTGGGAGTTTCTA+CGG | + | chr2.3:48993163-48993182 | MS.gene051201:intron | 25.0% |
| ! | TGCAAATAAACGGATATAAT+TGG | + | chr2.3:48992915-48992934 | MS.gene051201:intron | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | - | chr2.3:48991842-48991861 | None:intergenic | 25.0% |
| !! | CAAAATTTTTCACTTGTCTT+CGG | - | chr2.3:48992784-48992803 | None:intergenic | 25.0% |
| !! | GTTGAAATTTTACAATCTCA+GGG | + | chr2.3:48992937-48992956 | MS.gene051201:intron | 25.0% |
| !! | TATGCTAACTTGAGTTTTTA+AGG | - | chr2.3:48993137-48993156 | None:intergenic | 25.0% |
| !! | TTATATGAACTAGTATTGGA+TGG | + | chr2.3:48992378-48992397 | MS.gene051201:intron | 25.0% |
| !! | TTGAAATTTTACAATCTCAG+GGG | + | chr2.3:48992938-48992957 | MS.gene051201:intron | 25.0% |
| !! | TTTTATCATATTGACATGGA+GGG | - | chr2.3:48993574-48993593 | None:intergenic | 25.0% |
| !! | TTTTTATCATATTGACATGG+AGG | - | chr2.3:48993575-48993594 | None:intergenic | 25.0% |
| !!! | GCTCCATAATAATTTTAGAA+TGG | + | chr2.3:48992298-48992317 | MS.gene051201:intron | 25.0% |
| !!! | TTCTTGACAGTGTTTTATTT+CGG | - | chr2.3:48991200-48991219 | None:intergenic | 25.0% |
| AACTTTCTTAGTGGTCAATT+TGG | + | chr2.3:48991310-48991329 | MS.gene051201:CDS | 30.0% | |
| ACCAAATGATCTCATTTCTA+AGG | + | chr2.3:48993721-48993740 | MS.gene051201:CDS | 30.0% | |
| ACCTTAGAAATGAGATCATT+TGG | - | chr2.3:48993725-48993744 | None:intergenic | 30.0% | |
| AGTAATCTGGCATATAACAT+TGG | - | chr2.3:48993490-48993509 | None:intergenic | 30.0% | |
| ATTAAACCAACTTCCAACTA+TGG | + | chr2.3:48993755-48993774 | MS.gene051201:CDS | 30.0% | |
| ATTGGATGGACACAATATAA+GGG | + | chr2.3:48992392-48992411 | MS.gene051201:intron | 30.0% | |
| CACTAAGAAAGTTAGTATAG+AGG | - | chr2.3:48991303-48991322 | None:intergenic | 30.0% | |
| CACTTCAAATTAAGTTCTCA+GGG | - | chr2.3:48992682-48992701 | None:intergenic | 30.0% | |
| CATGTTAAGGATTCCATAAA+TGG | - | chr2.3:48993112-48993131 | None:intergenic | 30.0% | |
| CCCAGTTTGCATATTTAATA+CGG | - | chr2.3:48992604-48992623 | None:intergenic | 30.0% | |
| CCGTATTAAATATGCAAACT+GGG | + | chr2.3:48992601-48992620 | MS.gene051201:intron | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | + | chr2.3:48993606-48993625 | MS.gene051201:CDS | 30.0% | |
| CTCTATACTAACTTTCTTAG+TGG | + | chr2.3:48991301-48991320 | MS.gene051201:CDS | 30.0% | |
| GATTTGCAAAGTTCAAACTT+GGG | - | chr2.3:48991138-48991157 | None:intergenic | 30.0% | |
| GGTGCAAAATAAATTTCTCA+GGG | + | chr2.3:48992884-48992903 | MS.gene051201:intron | 30.0% | |
| GTAATCTGGCATATAACATT+GGG | - | chr2.3:48993489-48993508 | None:intergenic | 30.0% | |
| GTTAAAATCAACACCATCTA+AGG | - | chr2.3:48991353-48991372 | None:intergenic | 30.0% | |
| TAATCTGGCATATAACATTG+GGG | - | chr2.3:48993488-48993507 | None:intergenic | 30.0% | |
| TAATTTCGAGATTGTACTCT+TGG | + | chr2.3:48991081-48991100 | MS.gene051201:CDS | 30.0% | |
| TATTGGATGGACACAATATA+AGG | + | chr2.3:48992391-48992410 | MS.gene051201:intron | 30.0% | |
| TCACTTCAAATTAAGTTCTC+AGG | - | chr2.3:48992683-48992702 | None:intergenic | 30.0% | |
| TCCGTATTAAATATGCAAAC+TGG | + | chr2.3:48992600-48992619 | MS.gene051201:intron | 30.0% | |
| TCTTAAAATCATGGAATGCT+TGG | + | chr2.3:48993615-48993634 | MS.gene051201:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | + | chr2.3:48993820-48993839 | MS.gene051201:CDS | 30.0% | |
| TGGTGCAAAATAAATTTCTC+AGG | + | chr2.3:48992883-48992902 | MS.gene051201:intron | 30.0% | |
| TTAGAAATGAGATCATTTGG+TGG | - | chr2.3:48993722-48993741 | None:intergenic | 30.0% | |
| TTGAACTTTGCAAATCATTG+TGG | + | chr2.3:48991142-48991161 | MS.gene051201:CDS | 30.0% | |
| ! | ACAATCTAAGACAACAAAAC+AGG | + | chr2.3:48991422-48991441 | MS.gene051201:CDS | 30.0% |
| ! | ACCAAATAATACCGTTTTCA+TGG | + | chr2.3:48993652-48993671 | MS.gene051201:CDS | 30.0% |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | - | chr2.3:48993756-48993775 | None:intergenic | 30.0% |
| ! | CCAAATAATACCGTTTTCAT+GGG | + | chr2.3:48993653-48993672 | MS.gene051201:CDS | 30.0% |
| ! | GGTTGAAATTTTACAATCTC+AGG | + | chr2.3:48992936-48992955 | MS.gene051201:intron | 30.0% |
| ! | TGAAATTTTACAATCTCAGG+GGG | + | chr2.3:48992939-48992958 | MS.gene051201:intron | 30.0% |
| ! | TGATTTGCAAAGTTCAAACT+TGG | - | chr2.3:48991139-48991158 | None:intergenic | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | - | chr2.3:48991420-48991439 | None:intergenic | 30.0% |
| !! | GTTGATTTTAACATTGAAGG+AGG | + | chr2.3:48991361-48991380 | MS.gene051201:CDS | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | - | chr2.3:48991506-48991525 | None:intergenic | 30.0% |
| !!! | AGTTTTTAAGGCACATGTTA+AGG | - | chr2.3:48993125-48993144 | None:intergenic | 30.0% |
| !!! | GGTGTTGATTTTAACATTGA+AGG | + | chr2.3:48991358-48991377 | MS.gene051201:CDS | 30.0% |
| !!! | TTTTAAGACACAAGTTTCTG+AGG | + | chr2.3:48993868-48993887 | MS.gene051201:CDS | 30.0% |
| AAATATGCAAACTGGGAACT+TGG | + | chr2.3:48992608-48992627 | MS.gene051201:intron | 35.0% | |
| AAGCATAATTCCTCCATAGT+TGG | - | chr2.3:48993771-48993790 | None:intergenic | 35.0% | |
| ACATGTTAAGGAACTTAAGG+TGG | + | chr2.3:48993013-48993032 | MS.gene051201:intron | 35.0% | |
| ACTATGGAGGAATTATGCTT+TGG | + | chr2.3:48993771-48993790 | MS.gene051201:CDS | 35.0% | |
| ATGACATGGAGATATCAGAA+AGG | - | chr2.3:48991702-48991721 | None:intergenic | 35.0% | |
| ATGATCAAGACTTTAGCACA+TGG | - | chr2.3:48992634-48992653 | None:intergenic | 35.0% | |
| CCCATGAAAACGGTATTATT+TGG | - | chr2.3:48993656-48993675 | None:intergenic | 35.0% | |
| CTATGGAGGAATTATGCTTT+GGG | + | chr2.3:48993772-48993791 | MS.gene051201:CDS | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | - | chr2.3:48991764-48991783 | None:intergenic | 35.0% | |
| CTTGACAAAGCTATCAAAAC+TGG | + | chr2.3:48993512-48993531 | MS.gene051201:CDS | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | + | chr2.3:48991762-48991781 | MS.gene051201:intron | 35.0% | |
| GAAGGTGAGATAAGAATAAC+TGG | + | chr2.3:48992827-48992846 | MS.gene051201:intron | 35.0% | |
| GTTAAATAAAACGTGGTGTC+TGG | - | chr2.3:48991835-48991854 | None:intergenic | 35.0% | |
| TGGGATAGATTTCATGATGT+TGG | + | chr2.3:48993791-48993810 | MS.gene051201:CDS | 35.0% | |
| TTGATTTATGACAGGTGTAC+CGG | - | chr2.3:48993211-48993230 | None:intergenic | 35.0% | |
| ! | AAGATGAAGAACCCTGTTTT+GGG | - | chr2.3:48991647-48991666 | None:intergenic | 35.0% |
| ! | AAGGAGGTACAAATCTTTAC+TGG | + | chr2.3:48991377-48991396 | MS.gene051201:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | + | chr2.3:48991378-48991397 | MS.gene051201:CDS | 35.0% |
| ! | ATCAAAGCATCATCAAGTGA+TGG | + | chr2.3:48990992-48991011 | MS.gene051201:CDS | 35.0% |
| ! | ATCAACCTTTTATCTCTTGC+AGG | + | chr2.3:48993408-48993427 | MS.gene051201:intron | 35.0% |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | - | chr2.3:48993752-48993771 | None:intergenic | 35.0% |
| !! | GATGATGCTTTGATAGTGAA+GGG | - | chr2.3:48990986-48991005 | None:intergenic | 35.0% |
| !! | TGATGATGCTTTGATAGTGA+AGG | - | chr2.3:48990987-48991006 | None:intergenic | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | - | chr2.3:48993514-48993533 | None:intergenic | 35.0% |
| !!! | GAAACAGTTTTAGCTTCTTC+TGG | - | chr2.3:48991274-48991293 | None:intergenic | 35.0% |
| AAACCAACTTCCAACTATGG+AGG | + | chr2.3:48993758-48993777 | MS.gene051201:CDS | 40.0% | |
| AGGTACCTGCAAGAGATAAA+AGG | - | chr2.3:48993416-48993435 | None:intergenic | 40.0% | |
| AGTGTCACATGTTGATGTCA+AGG | - | chr2.3:48991059-48991078 | None:intergenic | 40.0% | |
| ATTCCTCCATAGTTGGAAGT+TGG | - | chr2.3:48993764-48993783 | None:intergenic | 40.0% | |
| CTCAAAGTGAAACAACATGC+TGG | + | chr2.3:48992863-48992882 | MS.gene051201:intron | 40.0% | |
| CTGTCAAGAAAAAGGGTTCA+AGG | + | chr2.3:48991210-48991229 | MS.gene051201:CDS | 40.0% | |
| GCGTAAAGAATAAGGTTGCT+TGG | + | chr2.3:48991770-48991789 | MS.gene051201:intron | 40.0% | |
| GCTTTGTCAAGGTAGTAATC+TGG | - | chr2.3:48993503-48993522 | None:intergenic | 40.0% | |
| GGCACATGTTAAGGAACTTA+AGG | + | chr2.3:48993010-48993029 | MS.gene051201:intron | 40.0% | |
| GGTGTGCAAGTGCAAATAAA+CGG | + | chr2.3:48992905-48992924 | MS.gene051201:intron | 40.0% | |
| TTGACATCAACATGTGACAC+TGG | + | chr2.3:48991058-48991077 | MS.gene051201:CDS | 40.0% | |
| ! | AAAGCATCATCAAGTGATGG+TGG | + | chr2.3:48990995-48991014 | MS.gene051201:CDS | 40.0% |
| ! | AGGTGCCTTCTTTTACGTTT+TGG | - | chr2.3:48991039-48991058 | None:intergenic | 40.0% |
| ! | CAGGTACTTTTACTTGTCTG+CGG | + | chr2.3:48993460-48993479 | MS.gene051201:intron | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | - | chr2.3:48991648-48991667 | None:intergenic | 40.0% |
| ! | TCTAAGGTAACACTTCCAAG+TGG | - | chr2.3:48991337-48991356 | None:intergenic | 40.0% |
| ! | TTACTTTCCCTCAGAGCATT+AGG | + | chr2.3:48991235-48991254 | MS.gene051201:CDS | 40.0% |
| ! | TTGGCTTTCCTCAATGTCTT+TGG | + | chr2.3:48991100-48991119 | MS.gene051201:CDS | 40.0% |
| !! | CGGATTCGAGTTTTGTACAA+GGG | - | chr2.3:48991180-48991199 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | + | chr2.3:48991337-48991356 | MS.gene051201:CDS | 40.0% |
| !! | TCGGATTCGAGTTTTGTACA+AGG | - | chr2.3:48991181-48991200 | None:intergenic | 40.0% |
| !! | TTAACTTGTGCTCTTAGCAG+TGG | + | chr2.3:48992008-48992027 | MS.gene051201:intron | 40.0% |
| AAAGAAACTGGCATCTGGCT+TGG | + | chr2.3:48991799-48991818 | MS.gene051201:intron | 45.0% | |
| AAGCCAGATGCCAGTTTCTT+TGG | - | chr2.3:48991800-48991819 | None:intergenic | 45.0% | |
| AGACCAAAGAAACTGGCATC+TGG | + | chr2.3:48991794-48991813 | MS.gene051201:intron | 45.0% | |
| AGCTTCTTCTGGTGAGCTAA+GGG | - | chr2.3:48991263-48991282 | None:intergenic | 45.0% | |
| AGTGGTCAATTTGGTCCACT+TGG | + | chr2.3:48991319-48991338 | MS.gene051201:CDS | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | + | chr2.3:48991633-48991652 | MS.gene051201:intron | 45.0% | |
| GCTTGGTAGACCAAAGAAAC+TGG | + | chr2.3:48991787-48991806 | MS.gene051201:intron | 45.0% | |
| GCTTTCCTCAATGTCTTTGG+AGG | + | chr2.3:48991103-48991122 | MS.gene051201:CDS | 45.0% | |
| GGCAATAGCTGGATGTATCT+CGG | + | chr2.3:48993889-48993908 | MS.gene051201:CDS | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | - | chr2.3:48993704-48993723 | None:intergenic | 45.0% | |
| TAGCTTCTTCTGGTGAGCTA+AGG | - | chr2.3:48991264-48991283 | None:intergenic | 45.0% | |
| TCACCTTCTGACGCATAAAG+AGG | - | chr2.3:48992815-48992834 | None:intergenic | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | + | chr2.3:48991632-48991651 | MS.gene051201:intron | 45.0% | |
| TGCTGGTAGTCCCATGAAAA+CGG | - | chr2.3:48993666-48993685 | None:intergenic | 45.0% | |
| TGGGGCCAAAACGTAAAAGA+AGG | + | chr2.3:48991031-48991050 | MS.gene051201:CDS | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | + | chr2.3:48991393-48991412 | MS.gene051201:CDS | 45.0% | |
| TTCCTCCTCCAAAGACATTG+AGG | - | chr2.3:48991111-48991130 | None:intergenic | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | + | chr2.3:48991392-48991411 | MS.gene051201:CDS | 45.0% | |
| ! | AAAACGTGGTGTCTGGTCTT+TGG | - | chr2.3:48991828-48991847 | None:intergenic | 45.0% |
| ! | AAGAAACTGGCATCTGGCTT+GGG | + | chr2.3:48991800-48991819 | MS.gene051201:intron | 45.0% |
| ! | TTCCTCAATGTCTTTGGAGG+AGG | + | chr2.3:48991106-48991125 | MS.gene051201:CDS | 45.0% |
| !! | CAAGTTTCTGAGGCAATAGC+TGG | + | chr2.3:48993878-48993897 | MS.gene051201:CDS | 45.0% |
| !! | GAGTTTTGTACAAGGGCTCT+CGG | - | chr2.3:48991173-48991192 | None:intergenic | 45.0% |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | - | chr2.3:48991641-48991660 | None:intergenic | 45.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | - | chr2.3:48991604-48991623 | None:intergenic | 5.0% |
| !!! | AATATCTTTTTTATAAAATT+GGG | - | chr2.3:48991603-48991622 | None:intergenic | 5.0% |
| AACATGTGCCCTAAGAGCCA+GGG | - | chr2.3:48993000-48993019 | None:intergenic | 50.0% | |
| AAGGGCTCCTAATGCTCTGA+GGG | - | chr2.3:48991245-48991264 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | - | chr2.3:48991744-48991763 | None:intergenic | 50.0% | |
| GATTGTCAAGGTCCCTAGCA+AGG | - | chr2.3:48991408-48991427 | None:intergenic | 50.0% | |
| GCACCTCTTTATGCGTCAGA+AGG | + | chr2.3:48992809-48992828 | MS.gene051201:intron | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | - | chr2.3:48991743-48991762 | None:intergenic | 50.0% | |
| GGCTCTTAGGGCACATGTTA+AGG | + | chr2.3:48993001-48993020 | MS.gene051201:intron | 50.0% | |
| TAACATGTGCCCTAAGAGCC+AGG | - | chr2.3:48993001-48993020 | None:intergenic | 50.0% | |
| TAAGGGCTCCTAATGCTCTG+AGG | - | chr2.3:48991246-48991265 | None:intergenic | 50.0% | |
| ! | TTTACAATCTCAGGGGGTGC+AGG | + | chr2.3:48992945-48992964 | MS.gene051201:intron | 50.0% |
| !! | TACGTTTTGGCCCCAGTAGA+CGG | - | chr2.3:48991026-48991045 | None:intergenic | 50.0% |
| ACATGTGCCCTAAGAGCCAG+GGG | - | chr2.3:48992999-48993018 | None:intergenic | 55.0% | |
| AGGTGCACACCCTCACTAAG+AGG | + | chr2.3:48992965-48992984 | MS.gene051201:intron | 55.0% | |
| AGTGGCGTATCCAGAACCCT+GGG | + | chr2.3:48992026-48992045 | MS.gene051201:intron | 55.0% | |
| ATGGTGGCATTGCCGTCTAC+TGG | + | chr2.3:48991011-48991030 | MS.gene051201:CDS | 55.0% | |
| GTATCCAGAACCCTGGGTCA+GGG | + | chr2.3:48992032-48992051 | MS.gene051201:intron | 55.0% | |
| TATCCAGAACCCTGGGTCAG+GGG | + | chr2.3:48992033-48992052 | MS.gene051201:intron | 55.0% | |
| TCACCTGATGCAGCTCCTAG+TGG | + | chr2.3:48993686-48993705 | MS.gene051201:CDS | 55.0% | |
| TGCACACCCTCACTAAGAGG+TGG | + | chr2.3:48992968-48992987 | MS.gene051201:intron | 55.0% | |
| TGGTGGCATTGCCGTCTACT+GGG | + | chr2.3:48991012-48991031 | MS.gene051201:CDS | 55.0% | |
| ATCCAGAACCCTGGGTCAGG+GGG | + | chr2.3:48992034-48992053 | MS.gene051201:intron | 60.0% | |
| CAGTGGCGTATCCAGAACCC+TGG | + | chr2.3:48992025-48992044 | MS.gene051201:intron | 60.0% | |
| CCACCACTAGGAGCTGCATC+AGG | - | chr2.3:48993692-48993711 | None:intergenic | 60.0% | |
| CCTGATGCAGCTCCTAGTGG+TGG | + | chr2.3:48993689-48993708 | MS.gene051201:CDS | 60.0% | |
| CGTATCCAGAACCCTGGGTC+AGG | + | chr2.3:48992031-48992050 | MS.gene051201:intron | 60.0% | |
| GCGGAGCCACCTCTTAGTGA+GGG | - | chr2.3:48992977-48992996 | None:intergenic | 60.0% | |
| GGAGCTGCATCAGGTGATGC+TGG | - | chr2.3:48993683-48993702 | None:intergenic | 60.0% | |
| GGTGGCATTGCCGTCTACTG+GGG | + | chr2.3:48991013-48991032 | MS.gene051201:CDS | 60.0% | |
| !! | GTCAGGGGGTGCGGAGTTTT+TGG | + | chr2.3:48992048-48992067 | MS.gene051201:intron | 60.0% |
| GGCGGAGCCACCTCTTAGTG+AGG | - | chr2.3:48992978-48992997 | None:intergenic | 65.0% | |
| TGTGCCCTAAGAGCCAGGGG+CGG | - | chr2.3:48992996-48993015 | None:intergenic | 65.0% | |
| AACTCCGCACCCCCTGACCC+AGG | - | chr2.3:48992046-48992065 | None:intergenic | 70.0% | |
| ACTCCGCACCCCCTGACCCA+GGG | - | chr2.3:48992045-48992064 | None:intergenic | 70.0% | |
| CACCCCCTGACCCAGGGTTC+TGG | - | chr2.3:48992039-48992058 | None:intergenic | 70.0% | |
| CTAAGAGGTGGCTCCGCCCC+TGG | + | chr2.3:48992980-48992999 | MS.gene051201:intron | 70.0% | |
| GAACCCTGGGTCAGGGGGTG+CGG | + | chr2.3:48992039-48992058 | MS.gene051201:intron | 70.0% | |
| ! | GGCTCCGCCCCTGGCTCTTA+GGG | + | chr2.3:48992989-48993008 | MS.gene051201:intron | 70.0% |
| ! | TGGCTCCGCCCCTGGCTCTT+AGG | + | chr2.3:48992988-48993007 | MS.gene051201:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 48990932 | 48993940 | 48990932 | ID=MS.gene051201 |
| chr2.3 | mRNA | 48990932 | 48993940 | 48990932 | ID=MS.gene051201.t1;Parent=MS.gene051201 |
| chr2.3 | exon | 48990932 | 48991443 | 48990932 | ID=MS.gene051201.t1.exon1;Parent=MS.gene051201.t1 |
| chr2.3 | CDS | 48990932 | 48991443 | 48990932 | ID=cds.MS.gene051201.t1;Parent=MS.gene051201.t1 |
| chr2.3 | exon | 48993463 | 48993940 | 48993463 | ID=MS.gene051201.t1.exon2;Parent=MS.gene051201.t1 |
| chr2.3 | CDS | 48993463 | 48993940 | 48993463 | ID=cds.MS.gene051201.t1;Parent=MS.gene051201.t1 |
| Gene Sequence |
| Protein sequence |
