Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67335.t1 | XP_024627930.1 | 68.2 | 447 | 116 | 4 | 1 | 440 | 1 | 428 | 8.50E-143 | 517.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67335.t1 | A0A396I0R2 | 64.0 | 525 | 122 | 6 | 1 | 512 | 1 | 471 | 4.7e-135 | 491.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05351 | MS.gene67335 | 0.867926 | 9.54E-66 | -1.69E-46 |
MS.gene057814 | MS.gene67335 | 0.887265 | 1.66E-72 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67335.t1 | MTR_0029s0140 | 83.217 | 143 | 24 | 0 | 370 | 512 | 241 | 383 | 4.96e-66 | 223 |
MS.gene67335.t1 | MTR_0029s0140 | 83.333 | 78 | 13 | 0 | 162 | 239 | 162 | 239 | 9.50e-41 | 154 |
MS.gene67335.t1 | MTR_2g020090 | 69.231 | 156 | 47 | 1 | 357 | 512 | 49 | 203 | 3.25e-65 | 215 |
MS.gene67335.t1 | MTR_4g017750 | 83.099 | 142 | 20 | 1 | 371 | 512 | 110 | 247 | 3.80e-65 | 216 |
MS.gene67335.t1 | MTR_2g102860 | 83.704 | 135 | 22 | 0 | 378 | 512 | 13 | 147 | 6.71e-65 | 212 |
MS.gene67335.t1 | MTR_3g058800 | 73.759 | 141 | 36 | 1 | 372 | 512 | 10 | 149 | 1.78e-63 | 208 |
MS.gene67335.t1 | MTR_5g080310 | 81.560 | 141 | 22 | 1 | 372 | 512 | 122 | 258 | 1.28e-62 | 210 |
MS.gene67335.t1 | MTR_1g023240 | 74.051 | 158 | 35 | 1 | 353 | 510 | 17 | 168 | 1.12e-60 | 205 |
MS.gene67335.t1 | MTR_6g463490 | 84.071 | 113 | 18 | 0 | 400 | 512 | 3 | 115 | 7.24e-60 | 197 |
MS.gene67335.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 370 | 503 | 7 | 139 | 3.61e-59 | 196 |
MS.gene67335.t1 | MTR_8g027455 | 61.290 | 124 | 46 | 2 | 371 | 493 | 24 | 146 | 5.57e-41 | 155 |
MS.gene67335.t1 | MTR_1g077650 | 63.636 | 110 | 39 | 1 | 371 | 480 | 46 | 154 | 1.64e-38 | 141 |
MS.gene67335.t1 | MTR_7g035425 | 38.182 | 165 | 87 | 5 | 178 | 330 | 179 | 340 | 1.05e-24 | 106 |
MS.gene67335.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 283 | 492 | 17 | 196 | 5.13e-19 | 87.8 |
MS.gene67335.t1 | MTR_5g053700 | 83.333 | 48 | 4 | 1 | 464 | 511 | 1 | 44 | 4.33e-18 | 79.0 |
MS.gene67335.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 240 | 452 | 34 | 210 | 3.19e-17 | 82.8 |
MS.gene67335.t1 | MTR_2g435380 | 74.000 | 50 | 13 | 0 | 552 | 601 | 135 | 184 | 8.21e-16 | 80.1 |
MS.gene67335.t1 | MTR_2g435440 | 68.421 | 57 | 17 | 1 | 545 | 600 | 234 | 290 | 9.37e-16 | 82.0 |
MS.gene67335.t1 | MTR_2g065670 | 70.909 | 55 | 15 | 1 | 547 | 600 | 400 | 454 | 1.35e-13 | 74.7 |
MS.gene67335.t1 | MTR_2g435370 | 71.429 | 49 | 14 | 0 | 552 | 600 | 299 | 347 | 1.02e-12 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 2.3:+55494020 | MS.gene67335:CDS |
CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 2.3:-55496188 | None:intergenic |
TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 2.3:-55496380 | None:intergenic |
TTCATCCTTCAATTCGTTCT+AGG | 0.257304 | 2.3:+55499697 | MS.gene67335:CDS |
TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 2.3:-55493587 | None:intergenic |
GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 2.3:-55493588 | None:intergenic |
CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 2.3:-55496224 | None:intergenic |
TATGGCACCCTACCTCCTTA+TGG | 0.289334 | 2.3:+55493499 | MS.gene67335:CDS |
TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 2.3:-55493259 | None:intergenic |
ATAACTGCTATCATCACTTT+TGG | 0.303053 | 2.3:+55493962 | MS.gene67335:CDS |
GACCATCGACCTTGGCTATC+AGG | 0.312423 | 2.3:+55501004 | MS.gene67335:CDS |
CCGGCCTATCTTTGGTGAAT+TGG | 0.312518 | 2.3:+55494272 | MS.gene67335:CDS |
TGGTGAATTGGTTAAGTATT+GGG | 0.326447 | 2.3:+55494284 | MS.gene67335:CDS |
TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 2.3:-55493253 | None:intergenic |
GACAATTGGGTGAGAACGTT+TGG | 0.332444 | 2.3:-55500906 | None:intergenic |
TCAAGACTAGGCGGGAAATA+TGG | 0.335697 | 2.3:-55500975 | None:intergenic |
TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 2.3:+55494124 | MS.gene67335:intron |
CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 2.3:-55494331 | None:intergenic |
CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 2.3:+55496039 | MS.gene67335:CDS |
TGGATTGGCCGGCCTATCTT+TGG | 0.360603 | 2.3:+55494264 | MS.gene67335:CDS |
CCAGTACATCCTGGATATTA+TGG | 0.365206 | 2.3:+55493481 | MS.gene67335:CDS |
TAATTTACAAACAACAGTTC+TGG | 0.368521 | 2.3:-55499643 | None:intergenic |
TGTAGTTATCCGAAGACAAT+TGG | 0.374370 | 2.3:-55500920 | None:intergenic |
GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 2.3:-55493582 | None:intergenic |
TCTTCTAGCCAGGGTTCACC+TGG | 0.380100 | 2.3:+55493391 | MS.gene67335:CDS |
CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 2.3:-55496231 | None:intergenic |
CGAGAATCTCTCGGATAATC+CGG | 0.382857 | 2.3:-55493784 | None:intergenic |
ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 2.3:-55496187 | None:intergenic |
TCTTCAAGTGATTGAGAAGA+TGG | 0.391736 | 2.3:-55499038 | None:intergenic |
ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 2.3:-55493580 | None:intergenic |
TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 2.3:-55494227 | None:intergenic |
GTCTTCGGATAACTACAAAA+AGG | 0.404464 | 2.3:+55500926 | MS.gene67335:CDS |
ATGGCACCCTACCTCCTTAT+GGG | 0.404620 | 2.3:+55493500 | MS.gene67335:CDS |
AGGAGCAGCTGGCACAGTTT+AGG | 0.406187 | 2.3:+55496352 | MS.gene67335:CDS |
GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 2.3:-55493576 | None:intergenic |
GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 2.3:+55494344 | MS.gene67335:CDS |
ATCTGCTACATCTTCTAGCC+AGG | 0.413120 | 2.3:+55493381 | MS.gene67335:CDS |
GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 2.3:+55496131 | MS.gene67335:CDS |
GATTGCTTCAGCAGCCGGTT+TGG | 0.416531 | 2.3:-55493926 | None:intergenic |
AGCGGCCACATTGGATTGGC+CGG | 0.417748 | 2.3:+55494253 | MS.gene67335:CDS |
TGAATATGGTGGTAAATGAT+AGG | 0.419203 | 2.3:-55493539 | None:intergenic |
TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 2.3:-55496243 | None:intergenic |
CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 2.3:+55494331 | MS.gene67335:CDS |
TTGGTGAATTGGTTAAGTAT+TGG | 0.427319 | 2.3:+55494283 | MS.gene67335:CDS |
GTTGTGGAGGGATTTGTTGT+AGG | 0.427635 | 2.3:-55493630 | None:intergenic |
TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 2.3:-55493658 | None:intergenic |
AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 2.3:+55494125 | MS.gene67335:intron |
GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 2.3:-55493657 | None:intergenic |
TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 2.3:+55496040 | MS.gene67335:CDS |
TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 2.3:+55496233 | MS.gene67335:CDS |
TCCTCCTCATCTACCGGATA+AGG | 0.441120 | 2.3:-55496435 | None:intergenic |
CAACTCATTACAGGCTGTGC+AGG | 0.441729 | 2.3:+55499569 | MS.gene67335:intron |
GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 2.3:+55493244 | None:intergenic |
GCAGAAGCCGTCGCAGGAGC+AGG | 0.442516 | 2.3:-55493433 | None:intergenic |
CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 2.3:+55493803 | MS.gene67335:CDS |
TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 2.3:-55496223 | None:intergenic |
TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 2.3:-55493711 | None:intergenic |
GCACTGAAGGACAAAGGAAT+AGG | 0.449218 | 2.3:+55502111 | MS.gene67335:CDS |
AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 2.3:+55496117 | MS.gene67335:CDS |
CGTTCTCACCCAATTGTCTT+CGG | 0.451497 | 2.3:+55500911 | MS.gene67335:CDS |
CCTGCTGATGTTGTAGCAGC+TGG | 0.452348 | 2.3:+55498994 | MS.gene67335:CDS |
ACCGGATAAGGCTCAACATT+GGG | 0.453953 | 2.3:-55496423 | None:intergenic |
GTTGTTGTTGGGGTCGTGGT+GGG | 0.454837 | 2.3:-55493684 | None:intergenic |
CCATAATATCCAGGATGTAC+TGG | 0.458343 | 2.3:-55493481 | None:intergenic |
TTGTGGAGGGATTTGTTGTA+GGG | 0.460385 | 2.3:-55493629 | None:intergenic |
GGGATTTGTTGTAGGGAAGA+AGG | 0.460436 | 2.3:-55493622 | None:intergenic |
GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 2.3:-55493931 | None:intergenic |
TTAATTGCTCTTGCGTCAAA+CGG | 0.464925 | 2.3:-55496266 | None:intergenic |
AGGACCCTTCACCATGATTG+AGG | 0.467659 | 2.3:-55496200 | None:intergenic |
TTAACCAATTCACCAAAGAT+AGG | 0.468585 | 2.3:-55494276 | None:intergenic |
GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 2.3:-55493581 | None:intergenic |
AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 2.3:+55494221 | MS.gene67335:CDS |
CAGGAGCAGGTACACTAGCC+TGG | 0.474014 | 2.3:-55493420 | None:intergenic |
GGGTTCACCTGGGTCCTCCC+AGG | 0.480027 | 2.3:+55493402 | MS.gene67335:CDS |
AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 2.3:+55496123 | MS.gene67335:CDS |
TTTCCCGCCTAGTCTTGAAA+TGG | 0.482035 | 2.3:+55500980 | MS.gene67335:CDS |
GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 2.3:-55496335 | None:intergenic |
GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 2.3:-55493586 | None:intergenic |
TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 2.3:-55494582 | None:intergenic |
TTGATGCAACACTACCCTTC+CGG | 0.489648 | 2.3:-55496164 | None:intergenic |
CCAGCTGCTACAACATCAGC+AGG | 0.490436 | 2.3:-55498994 | None:intergenic |
CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 2.3:+55494401 | MS.gene67335:CDS |
CATAGCTTCCCAAGAACACT+TGG | 0.490648 | 2.3:-55494133 | None:intergenic |
TCCCAATGTTGAGCCTTATC+CGG | 0.490951 | 2.3:+55496422 | MS.gene67335:CDS |
ACCGTAGGAAACATCATGTT+CGG | 0.492323 | 2.3:-55500690 | None:intergenic |
TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 2.3:-55494535 | None:intergenic |
GTTGTTTGTAAATTACATCA+AGG | 0.493930 | 2.3:+55499651 | MS.gene67335:CDS |
GCGGTATAATACTCACTTAG+TGG | 0.494631 | 2.3:+55493291 | MS.gene67335:CDS |
GTAGTTATCCGAAGACAATT+GGG | 0.497495 | 2.3:-55500919 | None:intergenic |
CAAGATATACCTCGATTTGA+AGG | 0.500283 | 2.3:-55499086 | None:intergenic |
TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 2.3:+55494302 | MS.gene67335:CDS |
AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 2.3:+55494345 | MS.gene67335:CDS |
CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 2.3:-55493250 | None:intergenic |
GCTAGCCTAGAACGAATTGA+AGG | 0.503264 | 2.3:-55499702 | None:intergenic |
GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 2.3:+55493266 | MS.gene67335:CDS |
CGAAGAGGGTGGTGGAGAGC+TGG | 0.506575 | 2.3:+55493741 | MS.gene67335:CDS |
GCAGTAGAAATGACAGGCAT+CGG | 0.507512 | 2.3:-55493340 | None:intergenic |
ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 2.3:+55496076 | MS.gene67335:CDS |
TCAATTCGTTCTAGGCTAGC+TGG | 0.510886 | 2.3:+55499705 | MS.gene67335:CDS |
AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 2.3:+55496322 | MS.gene67335:CDS |
GTCACAAGGCAAGGAATGAC+GGG | 0.512315 | 2.3:+55502060 | MS.gene67335:CDS |
TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 2.3:-55493439 | None:intergenic |
TGTTGTTGTTGGGGTCGTGG+TGG | 0.514983 | 2.3:-55493685 | None:intergenic |
AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 2.3:+55494584 | MS.gene67335:CDS |
TTTGTTGTAGGGAAGAAGGT+GGG | 0.521691 | 2.3:-55493618 | None:intergenic |
TCCGAACATGATGTTTCCTA+CGG | 0.522866 | 2.3:+55500689 | MS.gene67335:CDS |
GGCACAGTTTAGGCAAGCCC+AGG | 0.523133 | 2.3:+55496362 | MS.gene67335:CDS |
ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 2.3:-55493953 | None:intergenic |
GCTTCAGCAGCCGGTTTGGA+AGG | 0.524446 | 2.3:-55493922 | None:intergenic |
AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 2.3:+55494244 | MS.gene67335:CDS |
GACAAAGGAATAGGAAAGCA+AGG | 0.524652 | 2.3:+55502120 | MS.gene67335:CDS |
GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 2.3:-55496379 | None:intergenic |
TATGGTGGTAAATGATAGGT+CGG | 0.525246 | 2.3:-55493535 | None:intergenic |
GGAGGAAGGAAGGTCCCATA+AGG | 0.527593 | 2.3:-55493514 | None:intergenic |
ACAACATCAGCAGGGGTTGG+AGG | 0.527658 | 2.3:-55498985 | None:intergenic |
GTCGAAGATTCCTCATTGCC+CGG | 0.529164 | 2.3:+55499062 | MS.gene67335:CDS |
AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 2.3:+55494249 | MS.gene67335:CDS |
GGACCCTTCACCATGATTGA+GGG | 0.531656 | 2.3:-55496199 | None:intergenic |
TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 2.3:-55493464 | None:intergenic |
GGTCACAAGGCAAGGAATGA+CGG | 0.536242 | 2.3:+55502059 | MS.gene67335:CDS |
CAGTAGAAATGACAGGCATC+GGG | 0.537420 | 2.3:-55493339 | None:intergenic |
CTGCTGATGTTGTAGCAGCT+GGG | 0.539288 | 2.3:+55498995 | MS.gene67335:CDS |
TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 2.3:+55496332 | MS.gene67335:CDS |
TTCGTTCTAGGCTAGCTGGC+AGG | 0.541806 | 2.3:+55499709 | MS.gene67335:CDS |
AGGAAGATCATCAGCACTGA+AGG | 0.544077 | 2.3:+55502098 | MS.gene67335:CDS |
GGTAGGGTGCCATAATATCC+AGG | 0.544917 | 2.3:-55493490 | None:intergenic |
GCTACAACATCAGCAGGGGT+TGG | 0.545013 | 2.3:-55498988 | None:intergenic |
TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 2.3:-55496398 | None:intergenic |
AAGGTCATATGAGGAGCAGC+TGG | 0.546890 | 2.3:+55496341 | MS.gene67335:CDS |
AGGAGCAGGTACACTAGCCT+GGG | 0.550263 | 2.3:-55493419 | None:intergenic |
CCAATTCACCAAAGATAGGC+CGG | 0.550935 | 2.3:-55494272 | None:intergenic |
CTTCAAGTGATTGAGAAGAT+GGG | 0.551038 | 2.3:-55499037 | None:intergenic |
TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 2.3:-55496397 | None:intergenic |
CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 2.3:+55496232 | MS.gene67335:CDS |
CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 2.3:+55493727 | MS.gene67335:CDS |
AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 2.3:-55496032 | None:intergenic |
ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 2.3:+55493472 | MS.gene67335:CDS |
CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 2.3:+55494594 | MS.gene67335:CDS |
AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 2.3:+55496104 | MS.gene67335:CDS |
TACCGGATAAGGCTCAACAT+TGG | 0.558734 | 2.3:-55496424 | None:intergenic |
GGGAGGACCCAGGTGAACCC+TGG | 0.559461 | 2.3:-55493399 | None:intergenic |
ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 2.3:+55494510 | MS.gene67335:intron |
TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 2.3:+55496369 | MS.gene67335:CDS |
GTAGCAGCTGGGATGGTGAA+TGG | 0.562081 | 2.3:+55499006 | MS.gene67335:CDS |
TATACCTCGATTTGAAGGAC+CGG | 0.562133 | 2.3:-55499081 | None:intergenic |
CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 2.3:+55496189 | MS.gene67335:CDS |
GGAAGGTCCCATAAGGAGGT+AGG | 0.563395 | 2.3:-55493507 | None:intergenic |
GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 2.3:+55493272 | MS.gene67335:CDS |
GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 2.3:+55496145 | MS.gene67335:CDS |
ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 2.3:-55494578 | None:intergenic |
ATGGTCACCATTTCAAGACT+AGG | 0.570770 | 2.3:-55500987 | None:intergenic |
TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 2.3:-55494226 | None:intergenic |
AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 2.3:+55493733 | MS.gene67335:CDS |
GTCATGATGGTCACAAGGCA+AGG | 0.572837 | 2.3:+55502051 | MS.gene67335:CDS |
TCTGCTACATCTTCTAGCCA+GGG | 0.575189 | 2.3:+55493382 | MS.gene67335:CDS |
ATGATAGGTCGGAGGAAGGA+AGG | 0.575427 | 2.3:-55493524 | None:intergenic |
GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 2.3:+55494293 | MS.gene67335:CDS |
TCACAACTAGTCAATGAGAA+TGG | 0.578538 | 2.3:+55500951 | MS.gene67335:CDS |
CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 2.3:+55493306 | MS.gene67335:CDS |
AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 2.3:+55494338 | MS.gene67335:CDS |
AAGTGATTGAGAAGATGGGA+AGG | 0.586083 | 2.3:-55499033 | None:intergenic |
TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 2.3:+55496013 | MS.gene67335:intron |
GTAAATGATAGGTCGGAGGA+AGG | 0.587191 | 2.3:-55493528 | None:intergenic |
AGGATCAACTGTGACAAGCA+TGG | 0.587668 | 2.3:+55499671 | MS.gene67335:CDS |
CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 2.3:+55496195 | MS.gene67335:CDS |
GAAATGGTGACCATCGACCT+TGG | 0.589422 | 2.3:+55500996 | MS.gene67335:CDS |
TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 2.3:-55493826 | None:intergenic |
GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 2.3:-55493457 | None:intergenic |
GTAGATGCAGTAGAAATGAC+AGG | 0.591240 | 2.3:-55493346 | None:intergenic |
TGATGTTGTAGCAGCTGGGA+TGG | 0.591600 | 2.3:+55498999 | MS.gene67335:CDS |
AGGTGATGGTTGAGGTGTAA+CGG | 0.591630 | 2.3:-55499601 | None:intergenic |
GAAGGTCCCATAAGGAGGTA+GGG | 0.591901 | 2.3:-55493506 | None:intergenic |
AGAGCAATTAACGCAACAGA+TGG | 0.592019 | 2.3:+55496278 | MS.gene67335:CDS |
TCATCAAACAACCTAGGTGA+TGG | 0.593171 | 2.3:-55499615 | None:intergenic |
GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 2.3:+55493255 | MS.gene67335:CDS |
GAGAATCTCTCGGATAATCC+GGG | 0.595824 | 2.3:-55493783 | None:intergenic |
TAGTGTACCTGCTCCTGCGA+CGG | 0.598519 | 2.3:+55493426 | MS.gene67335:CDS |
AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 2.3:-55496394 | None:intergenic |
AACAACCTAGGTGATGGTTG+AGG | 0.600543 | 2.3:-55499609 | None:intergenic |
GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 2.3:+55496026 | MS.gene67335:CDS |
CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 2.3:+55493811 | MS.gene67335:CDS |
CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 2.3:+55494332 | MS.gene67335:CDS |
CTTCTAGCCAGGGTTCACCT+GGG | 0.603050 | 2.3:+55493392 | MS.gene67335:CDS |
GAAAGTTCATCAAACAACCT+AGG | 0.609222 | 2.3:-55499621 | None:intergenic |
ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 2.3:+55493726 | MS.gene67335:CDS |
ATTTGTTGTAGGGAAGAAGG+TGG | 0.610524 | 2.3:-55493619 | None:intergenic |
TCACCATTTCAAGACTAGGC+GGG | 0.613070 | 2.3:-55500983 | None:intergenic |
ACGGGCGTCACGCATTGTCA+AGG | 0.614447 | 2.3:+55502078 | MS.gene67335:CDS |
TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 2.3:+55494214 | MS.gene67335:CDS |
GGAAGGAAGGTCCCATAAGG+AGG | 0.617014 | 2.3:-55493511 | None:intergenic |
GATGTTTAATGATGTTTACC+CGG | 0.618633 | 2.3:+55493765 | MS.gene67335:CDS |
AACCTGATAGCCAAGGTCGA+TGG | 0.620869 | 2.3:-55501006 | None:intergenic |
ATACCTCGATTTGAAGGACC+GGG | 0.622897 | 2.3:-55499080 | None:intergenic |
TAATATCCAGGATGTACTGG+AGG | 0.622903 | 2.3:-55493478 | None:intergenic |
CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 2.3:+55496149 | MS.gene67335:CDS |
TCATCAGCACTGAAGGACAA+AGG | 0.626993 | 2.3:+55502105 | MS.gene67335:CDS |
AAAAGGTCATGATGGTCACA+AGG | 0.628663 | 2.3:+55502046 | MS.gene67335:CDS |
GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 2.3:+55496105 | MS.gene67335:CDS |
AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 2.3:+55494509 | MS.gene67335:intron |
AATCGACGACGAGAATCTCT+CGG | 0.634346 | 2.3:-55493793 | None:intergenic |
TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 2.3:+55496196 | MS.gene67335:CDS |
TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 2.3:-55493550 | None:intergenic |
CATGTGACAAATAGGCTAGG+AGG | 0.639349 | 2.3:+55494500 | MS.gene67335:intron |
ATTTGAAGGACCGGGCAATG+AGG | 0.641604 | 2.3:-55499072 | None:intergenic |
AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 2.3:+55493256 | MS.gene67335:CDS |
AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 2.3:-55496043 | None:intergenic |
ACACTAGCCTGGGAGGACCC+AGG | 0.645467 | 2.3:-55493409 | None:intergenic |
GGTGGTAAATGATAGGTCGG+AGG | 0.646104 | 2.3:-55493532 | None:intergenic |
ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 2.3:+55494381 | MS.gene67335:CDS |
CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 2.3:-55496220 | None:intergenic |
TTGGAAGACATATGGTGATG+TGG | 0.652180 | 2.3:+55493981 | MS.gene67335:CDS |
AGCTGCTACAACATCAGCAG+GGG | 0.652777 | 2.3:-55498992 | None:intergenic |
CAGCTGCTACAACATCAGCA+GGG | 0.653742 | 2.3:-55498993 | None:intergenic |
TCAACATTGGGACTTAAAAG+CGG | 0.654070 | 2.3:-55496411 | None:intergenic |
AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 2.3:-55496393 | None:intergenic |
AGCAGGTACACTAGCCTGGG+AGG | 0.658527 | 2.3:-55493416 | None:intergenic |
TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 2.3:+55496150 | MS.gene67335:CDS |
GGAGGATGCATTCACACTGG+TGG | 0.660778 | 2.3:+55494366 | MS.gene67335:CDS |
GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 2.3:+55493730 | MS.gene67335:CDS |
GCAACAGATGGCAAGTCAAG+CGG | 0.662263 | 2.3:+55496290 | MS.gene67335:CDS |
CAAGACAAACCTGATAGCCA+AGG | 0.662579 | 2.3:-55501013 | None:intergenic |
AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 2.3:+55494348 | MS.gene67335:CDS |
TTGCCCGGTCCTTCAAATCG+AGG | 0.665475 | 2.3:+55499077 | MS.gene67335:CDS |
ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 2.3:+55493717 | MS.gene67335:CDS |
GTCACCATTTCAAGACTAGG+CGG | 0.670563 | 2.3:-55500984 | None:intergenic |
AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 2.3:+55494363 | MS.gene67335:CDS |
AATATCCAGGATGTACTGGA+GGG | 0.686056 | 2.3:-55493477 | None:intergenic |
TTACACCTCAACCATCACCT+AGG | 0.702450 | 2.3:+55499604 | MS.gene67335:CDS |
ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 2.3:-55493463 | None:intergenic |
ATAGGCCGGCCAATCCAATG+TGG | 0.744808 | 2.3:-55494258 | None:intergenic |
GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 2.3:+55494235 | MS.gene67335:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 55493247 | 55502148 | 55493247 | ID=MS.gene67335 |
chr2.3 | mRNA | 55493247 | 55502148 | 55493247 | ID=MS.gene67335.t1;Parent=MS.gene67335 |
chr2.3 | exon | 55493247 | 55493839 | 55493247 | ID=MS.gene67335.t1.exon1;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55493247 | 55493839 | 55493247 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55493915 | 55494041 | 55493915 | ID=MS.gene67335.t1.exon2;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55493915 | 55494041 | 55493915 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55494132 | 55494422 | 55494132 | ID=MS.gene67335.t1.exon3;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55494132 | 55494422 | 55494132 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55494514 | 55494615 | 55494514 | ID=MS.gene67335.t1.exon4;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55494514 | 55494615 | 55494514 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55496021 | 55496443 | 55496021 | ID=MS.gene67335.t1.exon5;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55496021 | 55496443 | 55496021 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55498979 | 55499098 | 55498979 | ID=MS.gene67335.t1.exon6;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55498979 | 55499098 | 55498979 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55499582 | 55499730 | 55499582 | ID=MS.gene67335.t1.exon7;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55499582 | 55499730 | 55499582 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55500658 | 55500710 | 55500658 | ID=MS.gene67335.t1.exon8;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55500658 | 55500710 | 55500658 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55500901 | 55501025 | 55500901 | ID=MS.gene67335.t1.exon9;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55500901 | 55501025 | 55500901 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
chr2.3 | exon | 55502017 | 55502148 | 55502017 | ID=MS.gene67335.t1.exon10;Parent=MS.gene67335.t1 |
chr2.3 | CDS | 55502017 | 55502148 | 55502017 | ID=cds.MS.gene67335.t1;Parent=MS.gene67335.t1 |
Gene Sequence |
Protein sequence |