AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67405

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67405.t1 MTR_6g034870 50.549 273 11 7 1 163 1 259 7.03e-25 103
MS.gene67405.t1 MTR_1g033130 56.019 216 30 13 85 248 610 812 9.20e-16 77.8
MS.gene67405.t1 MTR_1g033130 55.605 223 30 14 63 231 605 812 2.10e-14 73.6
MS.gene67405.t1 MTR_1g033130 52.804 214 26 13 30 180 611 812 1.02e-11 65.9
MS.gene67405.t1 MTR_1g094130 41.429 280 90 6 1 249 27 263 3.11e-13 68.9
MS.gene67405.t1 MTR_6g034905 85.393 89 3 1 1 89 1 79 1.08e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 148 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATTGTTTGCTGAAGTT+TGG 0.250438 6.1:-15266878 None:intergenic
GGAGAGTAGACGGGTGGAGG+TGG 0.286343 6.1:-15267335 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.300627 6.1:-15267182 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.300627 6.1:-15267386 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.319166 6.1:-15267233 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.319166 6.1:-15267284 None:intergenic
GGTGAGTAAACGGGTGGAGG+TGG 0.319332 6.1:-15267131 None:intergenic
CACCACCACCACCAGTTTAC+AGG 0.325155 6.1:+15267405 MS.gene67405:CDS
GCGTATTTGTATGGCTTAGA+TGG 0.355782 6.1:-15266921 None:intergenic
GGTGACTTGTACTTGTAAAC+TGG 0.361961 6.1:-15267518 None:intergenic
GGTGGAGAGTAGACGGGTGG+AGG 0.376600 6.1:-15267338 None:intergenic
GGTGACTTATATTTATAAAC+AGG 0.391402 6.1:-15267008 None:intergenic
TAAGAGTAATGGAGGCCATT+TGG 0.393938 6.1:-15266818 None:intergenic
GGTGGTGAGTAGACAGGTGG+GGG 0.401670 6.1:-15266981 None:intergenic
GTAATTGTTTGCTGAAGTTT+GGG 0.410378 6.1:-15266877 None:intergenic
GGGGACTTGTACTTGTAAAC+AGG 0.412356 6.1:-15267365 None:intergenic
GGTGAGTAAGCAGGAGGAGG+AGG 0.413816 6.1:-15267590 None:intergenic
GGGGACTTGTATTTGTAAAC+TGG 0.418805 6.1:-15267314 None:intergenic
GGGGACTTGTATTTGTAAAC+TGG 0.418805 6.1:-15267467 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.421070 6.1:-15266948 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.421961 6.1:-15267488 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6.1:-15267236 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6.1:-15267287 None:intergenic
TGGTGGAGGTGGTGAGTAAA+CGG 0.433460 6.1:-15267141 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.439184 6.1:-15266984 None:intergenic
GGTGGGGAAGCGTATTTGTA+TGG 0.439487 6.1:-15266930 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.441074 6.1:-15267185 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.441074 6.1:-15267389 None:intergenic
GGAGACTTATACTTGTAAAC+TGG 0.445660 6.1:-15267569 None:intergenic
GGAGGTGGAGAGTAGACGGG+TGG 0.446066 6.1:-15267341 None:intergenic
GGTGAGTAGACAGGTGGAGG+AGG 0.447436 6.1:-15267437 None:intergenic
GGTGACTTATACTTGTAAAC+AGG 0.447648 6.1:-15267059 None:intergenic
GGTGATTTATACTTGTAAAC+TGG 0.448161 6.1:-15266957 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.450883 6.1:-15267440 None:intergenic
GGTGAATAGACAGGAGGAGG+AGG 0.455905 6.1:-15267539 None:intergenic
GGAAAATATGAGGTTCCAAA+TGG 0.456109 6.1:+15266803 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.456794 6.1:-15267089 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6.1:-15267212 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6.1:-15267263 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6.1:-15267161 None:intergenic
GGTGGTGAGTAGACTGGTGG+AGG 0.460575 6.1:-15267032 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.465366 6.1:-15267181 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.465366 6.1:-15267385 None:intergenic
GGAGACTTGTACCTGTAAAC+TGG 0.467295 6.1:-15267416 None:intergenic
GGTGGTGAGTAAACGGGTGG+AGG 0.470662 6.1:-15267134 None:intergenic
GGTGGAGGTGGTGAGTAAGC+AGG 0.475649 6.1:-15267599 None:intergenic
GGTGGTGAGTAAGCAGGAGG+AGG 0.480025 6.1:-15267593 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.483587 6.1:-15267083 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6.1:-15267203 None:intergenic
TTGCTGAAGTTTGGGATGGC+AGG 0.487862 6.1:-15266869 None:intergenic
GGTGGAGGTGGTGAGTAAAC+GGG 0.491567 6.1:-15267140 None:intergenic
GGTGGTGAATAGACAGGAGG+AGG 0.492627 6.1:-15267542 None:intergenic
GTTGGTGAGTAGACGGGTGG+AGG 0.494251 6.1:-15267491 None:intergenic
GTGAGTAAACGGGTGGAGGT+GGG 0.494340 6.1:-15267130 None:intergenic
GAGGTGGTGAGTAGACAGGT+GGG 0.495523 6.1:-15266983 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.496080 6.1:-15267487 None:intergenic
GAGAGTAGACGGGTGGAGGT+GGG 0.500985 6.1:-15267334 None:intergenic
GGAGTTGGTGAGTAGACGGG+TGG 0.504102 6.1:-15267494 None:intergenic
GGTGAGTAGACAGGTGGAGG+TGG 0.506411 6.1:-15267080 None:intergenic
TACCTGTAAACTGGTGGTGG+TGG 0.508427 6.1:-15267407 None:intergenic
TATGGCTTAGATGGTGGTGG+TGG 0.508770 6.1:-15266912 None:intergenic
GGTGAGTAGACTGGTGGAGG+TGG 0.509653 6.1:-15267029 None:intergenic
TATTTATAAACAGGTGGAGG+TGG 0.516161 6.1:-15266999 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.516214 6.1:-15267180 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.516214 6.1:-15267384 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6.1:-15267152 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6.1:-15267254 None:intergenic
TAGATATAATGTGGTGGAGG+TGG 0.521642 6.1:-15267611 None:intergenic
TAGTAATGGTAAGGAGGAGG+TGG 0.525284 6.1:-15267641 None:intergenic
GTGAGTAGACGGGTGGAGGA+GGG 0.525831 6.1:-15267232 None:intergenic
GTGAGTAGACGGGTGGAGGA+GGG 0.525831 6.1:-15267283 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.526037 6.1:-15267486 None:intergenic
TGAGTAGACGGGTGGAGGAG+GGG 0.526670 6.1:-15267231 None:intergenic
TGAGTAGACGGGTGGAGGAG+GGG 0.526670 6.1:-15267282 None:intergenic
AGAGTAGACGGGTGGAGGTG+GGG 0.526670 6.1:-15267333 None:intergenic
GGTGGTGGTGGTGAGTAGAC+GGG 0.529501 6.1:-15267191 None:intergenic
GGTGGTGGTGGTGAGTAGAC+GGG 0.529501 6.1:-15267395 None:intergenic
TACTTGTAAACAGGTGGAGG+TGG 0.529739 6.1:-15267050 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6.1:-15267242 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6.1:-15267293 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6.1:-15267206 None:intergenic
CGTAAACCACCATTTAGTAA+TGG 0.534220 6.1:-15267655 None:intergenic
TTGTATGGCTTAGATGGTGG+TGG 0.534713 6.1:-15266915 None:intergenic
TGAGTAAACGGGTGGAGGTG+GGG 0.537423 6.1:-15267129 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.541551 6.1:-15266987 None:intergenic
ACCACCATTTAGTAATGGTA+AGG 0.543749 6.1:-15267650 None:intergenic
TGGTGGTGGTGGTGAGTAGA+CGG 0.545412 6.1:-15267192 None:intergenic
TGGTGGTGGTGGTGAGTAGA+CGG 0.545412 6.1:-15267396 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.545632 6.1:-15267560 None:intergenic
CAATGCAATAGTAAGAGTAA+TGG 0.551028 6.1:-15266829 None:intergenic
GACTTGTATTTGTAAACTGG+TGG 0.551063 6.1:-15267311 None:intergenic
GACTTGTATTTGTAAACTGG+TGG 0.551063 6.1:-15267464 None:intergenic
TACTTGTAAAGTGGTGGAGG+TGG 0.552152 6.1:-15267101 None:intergenic
TATTTGTAAACTGGTGGAGG+TGG 0.555899 6.1:-15267305 None:intergenic
TATTTGTAAACTGGTGGAGG+TGG 0.555899 6.1:-15267458 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.556465 6.1:-15267446 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6.1:-15267243 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6.1:-15267294 None:intergenic
GTGACTTGTACTTGTAAACT+GGG 0.563890 6.1:-15267517 None:intergenic
GGTGGAGGTGGTGAATAGAC+AGG 0.569201 6.1:-15267548 None:intergenic
CTTGTAAACTGGTGGTGGTG+GGG 0.574955 6.1:-15266946 None:intergenic
TTGTATTTGTAAACTGGTGG+AGG 0.576012 6.1:-15267308 None:intergenic
TTGTATTTGTAAACTGGTGG+AGG 0.576012 6.1:-15267461 None:intergenic
TTATACTTGTAAACTGGTGG+TGG 0.577426 6.1:-15266951 None:intergenic
GGTGGAGGTGGTGAGTAGAC+TGG 0.577950 6.1:-15267038 None:intergenic
TTATATTTATAAACAGGTGG+AGG 0.579141 6.1:-15267002 None:intergenic
GACTTATACTTGTAAACTGG+TGG 0.580181 6.1:-15267566 None:intergenic
CTTAGATGGTGGTGGTGGAG+AGG 0.582008 6.1:-15266907 None:intergenic
GACTTATATTTATAAACAGG+TGG 0.583330 6.1:-15267005 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6.1:-15267086 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6.1:-15267443 None:intergenic
GGTGGTGGTGAGTAGACGGG+TGG 0.586082 6.1:-15267188 None:intergenic
GGTGGTGGTGAGTAGACGGG+TGG 0.586082 6.1:-15267392 None:intergenic
TGCAATAGTAAGAGTAATGG+AGG 0.586366 6.1:-15266826 None:intergenic
TTATACTTGTAAACTGGTGG+AGG 0.588467 6.1:-15267563 None:intergenic
ACTTGTAAACTGGTGGTGGT+GGG 0.589086 6.1:-15266947 None:intergenic
GACTTGTACTTGTAAAGTGG+TGG 0.590287 6.1:-15267107 None:intergenic
ATTTAGTAATGGTAAGGAGG+AGG 0.592078 6.1:-15267644 None:intergenic
GAGTAGATATAATGTGGTGG+AGG 0.594587 6.1:-15267614 None:intergenic
GGAGGTGGTGAGTAAGCAGG+AGG 0.598069 6.1:-15267596 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6.1:-15267155 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6.1:-15267257 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.601010 6.1:-15267158 None:intergenic
GACTTATACTTGTAAACAGG+TGG 0.601528 6.1:-15267056 None:intergenic
TTATACTTGTAAACAGGTGG+AGG 0.603042 6.1:-15267053 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6.1:-15267239 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6.1:-15267290 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.604396 6.1:-15267260 None:intergenic
TTGTACTTGTAAAGTGGTGG+AGG 0.604923 6.1:-15267104 None:intergenic
GGAGGTGGTGAGTAGACTGG+TGG 0.605274 6.1:-15267035 None:intergenic
GGGGACTTGTACTTGTAAAG+TGG 0.605809 6.1:-15267110 None:intergenic
TTGTACCTGTAAACTGGTGG+TGG 0.609022 6.1:-15267410 None:intergenic
AGGTGGTGAGTAGACAGGTG+GGG 0.609414 6.1:-15266982 None:intergenic
ACCATTTAGTAATGGTAAGG+AGG 0.612519 6.1:-15267647 None:intergenic
GGAGGTGGTGAGTAAACGGG+TGG 0.620262 6.1:-15267137 None:intergenic
GGTGAAGAGTAGATATAATG+TGG 0.631465 6.1:-15267620 None:intergenic
GGAGGTGGTGAATAGACAGG+AGG 0.632836 6.1:-15267545 None:intergenic
TTGTTTGCTGAAGTTTGGGA+TGG 0.632960 6.1:-15266873 None:intergenic
GATTTATACTTGTAAACTGG+TGG 0.644397 6.1:-15266954 None:intergenic
GAAGAGTAGATATAATGTGG+TGG 0.646587 6.1:-15267617 None:intergenic
GGGACTTGTACTTGTAAACA+GGG 0.650324 6.1:-15267364 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.657109 6.1:-15267209 None:intergenic
GACTTGTACTTGTAAACAGG+GGG 0.669699 6.1:-15267362 None:intergenic
GACTTGTACTTGTAAACTGG+GGG 0.671843 6.1:-15267515 None:intergenic
TATTTGTATGGCTTAGATGG+TGG 0.691843 6.1:-15266918 None:intergenic
TGACTTGTACTTGTAAACTG+GGG 0.694353 6.1:-15267516 None:intergenic
GACTTGTACCTGTAAACTGG+TGG 0.715479 6.1:-15267413 None:intergenic
GGACTTGTACTTGTAAACAG+GGG 0.759333 6.1:-15267363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GACTTATATTTATAAACAGG+TGG - chr6.1:15267008-15267027 None:intergenic 25.0%
! GGTGACTTATATTTATAAAC+AGG - chr6.1:15267011-15267030 None:intergenic 25.0%
! TTATATTTATAAACAGGTGG+AGG - chr6.1:15267005-15267024 None:intergenic 25.0%
CAATGCAATAGTAAGAGTAA+TGG - chr6.1:15266832-15266851 None:intergenic 30.0%
GATTTATACTTGTAAACTGG+TGG - chr6.1:15266957-15266976 None:intergenic 30.0%
GGTGATTTATACTTGTAAAC+TGG - chr6.1:15266960-15266979 None:intergenic 30.0%
! GTAATTGTTTGCTGAAGTTT+GGG - chr6.1:15266880-15266899 None:intergenic 30.0%
GAAGAGTAGATATAATGTGG+TGG - chr6.1:15267620-15267639 None:intergenic 35.0%
GACTTATACTTGTAAACAGG+TGG - chr6.1:15267059-15267078 None:intergenic 35.0%
GACTTATACTTGTAAACTGG+TGG - chr6.1:15267569-15267588 None:intergenic 35.0%
GACTTGTATTTGTAAACTGG+TGG - chr6.1:15267314-15267333 None:intergenic 35.0%
GGAGACTTATACTTGTAAAC+TGG - chr6.1:15267572-15267591 None:intergenic 35.0%
GGTGAAGAGTAGATATAATG+TGG - chr6.1:15267623-15267642 None:intergenic 35.0%
GGTGACTTATACTTGTAAAC+AGG - chr6.1:15267062-15267081 None:intergenic 35.0%
TATTTATAAACAGGTGGAGG+TGG - chr6.1:15267002-15267021 None:intergenic 35.0%
TATTTGTATGGCTTAGATGG+TGG - chr6.1:15266921-15266940 None:intergenic 35.0%
TGCAATAGTAAGAGTAATGG+AGG - chr6.1:15266829-15266848 None:intergenic 35.0%
TTATACTTGTAAACAGGTGG+AGG - chr6.1:15267056-15267075 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+AGG - chr6.1:15266954-15266973 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+TGG - chr6.1:15266954-15266973 None:intergenic 35.0%
TTGTATTTGTAAACTGGTGG+AGG - chr6.1:15267311-15267330 None:intergenic 35.0%
! CGTAATTGTTTGCTGAAGTT+TGG - chr6.1:15266881-15266900 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6.1:15267520-15267539 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6.1:15267519-15267538 None:intergenic 35.0%
GACTTGTACTTGTAAACAGG+GGG - chr6.1:15267365-15267384 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6.1:15267161-15267180 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6.1:15267161-15267180 None:intergenic 40.0%
GACTTGTACTTGTAAAGTGG+TGG - chr6.1:15267110-15267129 None:intergenic 40.0%
GAGTAGATATAATGTGGTGG+AGG - chr6.1:15267617-15267636 None:intergenic 40.0%
GCGTATTTGTATGGCTTAGA+TGG - chr6.1:15266924-15266943 None:intergenic 40.0%
GGACTTGTACTTGTAAACAG+GGG - chr6.1:15267366-15267385 None:intergenic 40.0%
GGGACTTGTACTTGTAAACA+GGG - chr6.1:15267367-15267386 None:intergenic 40.0%
GGGGACTTGTATTTGTAAAC+TGG - chr6.1:15267317-15267336 None:intergenic 40.0%
TATTTGTAAACTGGTGGAGG+TGG - chr6.1:15267308-15267327 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+AGG - chr6.1:15267158-15267177 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6.1:15267158-15267177 None:intergenic 40.0%
TTGTACTTGTAAAGTGGTGG+AGG - chr6.1:15267107-15267126 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6.1:15267521-15267540 None:intergenic 40.0%
! TAAGAGTAATGGAGGCCATT+TGG - chr6.1:15266821-15266840 None:intergenic 40.0%
! TAGATATAATGTGGTGGAGG+TGG - chr6.1:15267614-15267633 None:intergenic 40.0%
! TTGTTTGCTGAAGTTTGGGA+TGG - chr6.1:15266876-15266895 None:intergenic 40.0%
GACTTGTACCTGTAAACTGG+TGG - chr6.1:15267416-15267435 None:intergenic 45.0%
GGAGACTTGTACCTGTAAAC+TGG - chr6.1:15267419-15267438 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+AGG - chr6.1:15267164-15267183 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6.1:15267164-15267183 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAG+TGG - chr6.1:15267113-15267132 None:intergenic 45.0%
TACTTGTAAACAGGTGGAGG+TGG - chr6.1:15267053-15267072 None:intergenic 45.0%
TACTTGTAAACTGGGGGAGT+TGG - chr6.1:15267512-15267531 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6.1:15267155-15267174 None:intergenic 45.0%
TAGTAATGGTAAGGAGGAGG+TGG - chr6.1:15267644-15267663 None:intergenic 45.0%
TTGTACCTGTAAACTGGTGG+TGG - chr6.1:15267413-15267432 None:intergenic 45.0%
TTGTACTTGTAAACAGGGGG+AGG - chr6.1:15267362-15267381 None:intergenic 45.0%
! TACTTGTAAAGTGGTGGAGG+TGG - chr6.1:15267104-15267123 None:intergenic 45.0%
! TTGTATGGCTTAGATGGTGG+TGG - chr6.1:15266918-15266937 None:intergenic 45.0%
!! ACTTGTAAACTGGTGGTGGT+GGG - chr6.1:15266950-15266969 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6.1:15266951-15266970 None:intergenic 45.0%
TACTTGTAAACAGGGGGAGG+TGG - chr6.1:15267359-15267378 None:intergenic 50.0%
TGGTGGAGGTGGTGAGTAAA+CGG - chr6.1:15267144-15267163 None:intergenic 50.0%
! GGTGGGGAAGCGTATTTGTA+TGG - chr6.1:15266933-15266952 None:intergenic 50.0%
! TTGCTGAAGTTTGGGATGGC+AGG - chr6.1:15266872-15266891 None:intergenic 50.0%
!! CTTGTAAACTGGTGGTGGTG+GGG - chr6.1:15266949-15266968 None:intergenic 50.0%
!! TACCTGTAAACTGGTGGTGG+TGG - chr6.1:15267410-15267429 None:intergenic 50.0%
!! TATGGCTTAGATGGTGGTGG+TGG - chr6.1:15266915-15266934 None:intergenic 50.0%
AGGTGGTGAGTAGACAGGTG+GGG - chr6.1:15266985-15267004 None:intergenic 55.0%
CACCACCACCACCAGTTTAC+AGG + chr6.1:15267201-15267220 MS.gene67405:CDS 55.0%
GAGGTGGTGAGTAGACAGGT+GGG - chr6.1:15266986-15267005 None:intergenic 55.0%
GGAGGTGGTGAATAGACAGG+AGG - chr6.1:15267548-15267567 None:intergenic 55.0%
GGTGAATAGACAGGAGGAGG+AGG - chr6.1:15267542-15267561 None:intergenic 55.0%
GGTGGAGGTGGTGAATAGAC+AGG - chr6.1:15267551-15267570 None:intergenic 55.0%
GGTGGAGGTGGTGAGTAAAC+GGG - chr6.1:15267143-15267162 None:intergenic 55.0%
GGTGGTGAATAGACAGGAGG+AGG - chr6.1:15267545-15267564 None:intergenic 55.0%
GTGAGTAAACGGGTGGAGGT+GGG - chr6.1:15267133-15267152 None:intergenic 55.0%
TGAGTAAACGGGTGGAGGTG+GGG - chr6.1:15267132-15267151 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6.1:15267093-15267112 None:intergenic 55.0%
!! CTTAGATGGTGGTGGTGGAG+AGG - chr6.1:15266910-15266929 None:intergenic 55.0%
!! TGGGGGAGTTGGTGAGTAGA+CGG - chr6.1:15267501-15267520 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+CGG - chr6.1:15267195-15267214 None:intergenic 55.0%
AGAGTAGACGGGTGGAGGTG+GGG - chr6.1:15267336-15267355 None:intergenic 60.0%
AGGGGGAGGTGGAGAGTAGA+CGG - chr6.1:15267348-15267367 None:intergenic 60.0%
GAGAGTAGACGGGTGGAGGT+GGG - chr6.1:15267337-15267356 None:intergenic 60.0%
GGAGGTGGTGAGTAAACGGG+TGG - chr6.1:15267140-15267159 None:intergenic 60.0%
GGAGGTGGTGAGTAAGCAGG+AGG - chr6.1:15267599-15267618 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6.1:15266987-15267006 None:intergenic 60.0%
GGAGGTGGTGAGTAGACTGG+TGG - chr6.1:15267038-15267057 None:intergenic 60.0%
GGTGAGTAAACGGGTGGAGG+TGG - chr6.1:15267134-15267153 None:intergenic 60.0%
GGTGAGTAAGCAGGAGGAGG+AGG - chr6.1:15267593-15267612 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+AGG - chr6.1:15267083-15267102 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+TGG - chr6.1:15267083-15267102 None:intergenic 60.0%
GGTGAGTAGACTGGTGGAGG+TGG - chr6.1:15267032-15267051 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAAGC+AGG - chr6.1:15267602-15267621 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6.1:15266990-15267009 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6.1:15266990-15267009 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+TGG - chr6.1:15266990-15267009 None:intergenic 60.0%
GGTGGTGAGTAAACGGGTGG+AGG - chr6.1:15267137-15267156 None:intergenic 60.0%
GGTGGTGAGTAAGCAGGAGG+AGG - chr6.1:15267596-15267615 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+AGG - chr6.1:15266984-15267003 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6.1:15266984-15267003 None:intergenic 60.0%
GGTGGTGAGTAGACTGGTGG+AGG - chr6.1:15267035-15267054 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGA+GGG - chr6.1:15267235-15267254 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6.1:15267184-15267203 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGAG+GGG - chr6.1:15267234-15267253 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6.1:15267183-15267202 None:intergenic 60.0%
! GTTGGTGAGTAGACGGGTGG+AGG - chr6.1:15267494-15267513 None:intergenic 60.0%
!! GGAGTTGGTGAGTAGACGGG+TGG - chr6.1:15267497-15267516 None:intergenic 60.0%
!! GGGGGAGTTGGTGAGTAGAC+GGG - chr6.1:15267500-15267519 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+GGG - chr6.1:15267194-15267213 None:intergenic 60.0%
GGAGAGTAGACGGGTGGAGG+TGG - chr6.1:15267338-15267357 None:intergenic 65.0%
GGAGGTGGAGAGTAGACGGG+TGG - chr6.1:15267344-15267363 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6.1:15267242-15267261 None:intergenic 65.0%
GGGGGAGGTGGAGAGTAGAC+GGG - chr6.1:15267347-15267366 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6.1:15266981-15267000 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6.1:15267185-15267204 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6.1:15267185-15267204 None:intergenic 65.0%
GGTGGAGAGTAGACGGGTGG+AGG - chr6.1:15267341-15267360 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6.1:15267188-15267207 None:intergenic 65.0%
! GGTGGTGGTGAGTAGACGGG+TGG - chr6.1:15267191-15267210 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 15266810 15267664 15266810 ID=MS.gene67405
chr6.1 mRNA 15266810 15267664 15266810 ID=MS.gene67405.t1;Parent=MS.gene67405
chr6.1 exon 15266810 15267664 15266810 ID=MS.gene67405.t1.exon1;Parent=MS.gene67405.t1
chr6.1 CDS 15266810 15267664 15266810 ID=cds.MS.gene67405.t1;Parent=MS.gene67405.t1
Gene Sequence

>MS.gene67405

ATGAGGTTCCAAATGGCCTCCATTACTCTTACTATTGCATTGACAATAATCTCTCTTAGCCTGCCATCCCAAACTTCAGCAAACAATTACGTCTATTCCTCTCCACCACCACCATCTAAGCCATACAAATACGCTTCCCCACCACCACCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATATAAGTCACCACCTCCACCAGTCTACTCACCACCTCCACCTGTTTACAAGTATAAGTCACCACCTCCACCTGTCTACTCACCACCTCCACCACTTTACAAGTACAAGTCCCCACCTCCACCCGTTTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCTCCACCTCCCCCTGTTTACAAGTACAAGTCCCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAGGTACAAGTCTCCTCCTCCACCTGTCTACTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCACCAACTCCCCCAGTTTACAAGTACAAGTCACCTCCTCCTCCTGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTGCTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCATTACTAA
Protein sequence

>MS.gene67405.t1

MRFQMASITLTIALTIISLSLPSQTSANNYVYSSPPPPSKPYKYASPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPLYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYRYKSPPPPVYSPPPPVYKYKSPPPPVYSPTPPVYKYKSPPPPVYSPPPPVYKYKSPPPPAYSPPPPHYIYSSPPPPYHY