Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67561.t1 | XP_024627141.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 4.10E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67561.t1 | Q9ZVL3 | 61.2 | 242 | 62 | 6 | 16 | 256 | 5 | 215 | 2.5e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67561.t1 | I3TAX9 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 3.0e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67561.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050859 | MS.gene67561 | 0.980531 | 1.96E-150 | -1.69E-46 |
| MS.gene050860 | MS.gene67561 | 0.987564 | 1.02E-170 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67561.t1 | MTR_7g113680 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| MS.gene67561.t1 | MTR_1g082660 | 83.539 | 243 | 36 | 1 | 1 | 243 | 1 | 239 | 4.58e-140 | 394 |
| MS.gene67561.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.38e-62 | 196 |
| MS.gene67561.t1 | MTR_3g099180 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.58e-62 | 196 |
| MS.gene67561.t1 | MTR_2g023340 | 49.468 | 188 | 70 | 8 | 82 | 259 | 66 | 238 | 8.70e-53 | 172 |
| MS.gene67561.t1 | MTR_2g081600 | 59.770 | 87 | 34 | 1 | 100 | 185 | 21 | 107 | 2.10e-31 | 112 |
| MS.gene67561.t1 | MTR_2g081630 | 61.446 | 83 | 31 | 1 | 100 | 181 | 21 | 103 | 8.60e-31 | 111 |
| MS.gene67561.t1 | MTR_3g012030 | 39.744 | 78 | 47 | 0 | 102 | 179 | 9 | 86 | 1.02e-11 | 63.9 |
| MS.gene67561.t1 | MTR_8g041420 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.90e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67561.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene67561.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene67561.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene67561.t1 | AT1G08970 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.74e-88 | 261 |
| MS.gene67561.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene67561.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene67561.t1 | AT1G54830 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.81e-87 | 259 |
| MS.gene67561.t1 | AT3G48590 | 68.790 | 157 | 44 | 3 | 83 | 238 | 47 | 199 | 1.70e-70 | 216 |
| MS.gene67561.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene67561.t1 | AT5G63470 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.00e-67 | 209 |
| MS.gene67561.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene67561.t1 | AT1G56170 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.31e-66 | 205 |
| MS.gene67561.t1 | AT5G50480 | 49.123 | 171 | 63 | 5 | 79 | 248 | 35 | 182 | 2.66e-46 | 154 |
| MS.gene67561.t1 | AT5G27910 | 45.349 | 172 | 72 | 8 | 77 | 248 | 15 | 164 | 4.55e-39 | 134 |
| MS.gene67561.t1 | AT5G50490 | 38.889 | 180 | 96 | 4 | 70 | 249 | 8 | 173 | 1.66e-34 | 123 |
| MS.gene67561.t1 | AT5G50470 | 39.560 | 182 | 71 | 8 | 79 | 251 | 44 | 195 | 9.52e-31 | 114 |
| MS.gene67561.t1 | AT5G38140 | 43.269 | 104 | 55 | 2 | 76 | 178 | 44 | 144 | 1.38e-25 | 100 |
| MS.gene67561.t1 | AT3G12480 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.28e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 7.3:-3321006 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 7.3:-3320542 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 7.3:+3320961 | MS.gene67561:CDS |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 7.3:+3320616 | MS.gene67561:CDS |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 7.3:-3320551 | None:intergenic |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 7.3:-3321214 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 7.3:-3321154 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 7.3:+3321103 | MS.gene67561:CDS |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 7.3:+3320576 | MS.gene67561:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 7.3:-3320556 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 7.3:-3320541 | None:intergenic |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 7.3:-3320572 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 7.3:+3321114 | MS.gene67561:CDS |
| CACAACCAGAATCCGCAAAT+GGG | 0.411828 | 7.3:+3320479 | MS.gene67561:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 7.3:+3321037 | MS.gene67561:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 7.3:+3320575 | MS.gene67561:CDS |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 7.3:+3320693 | MS.gene67561:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 7.3:-3321153 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 7.3:-3321235 | None:intergenic |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 7.3:-3320883 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 7.3:+3321195 | MS.gene67561:CDS |
| GCACAACCAGAATCCGCAAA+TGG | 0.451270 | 7.3:+3320478 | MS.gene67561:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 7.3:+3320754 | MS.gene67561:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 7.3:-3321049 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 7.3:-3320667 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 7.3:+3320853 | MS.gene67561:CDS |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 7.3:+3320873 | MS.gene67561:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 7.3:+3320605 | MS.gene67561:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 7.3:-3321181 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 7.3:-3320571 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 7.3:-3320708 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 7.3:+3320617 | MS.gene67561:CDS |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 7.3:-3321108 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 7.3:+3321115 | MS.gene67561:CDS |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 7.3:-3321176 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 7.3:+3320554 | MS.gene67561:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 7.3:-3321177 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 7.3:-3321193 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 7.3:-3321034 | None:intergenic |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 7.3:+3320897 | MS.gene67561:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 7.3:-3321182 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 7.3:-3321142 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 7.3:+3320545 | MS.gene67561:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 7.3:+3321094 | MS.gene67561:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 7.3:-3320766 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 7.3:-3320658 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 7.3:-3320620 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 7.3:+3320721 | MS.gene67561:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 7.3:+3320709 | MS.gene67561:CDS |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 7.3:+3320577 | MS.gene67561:CDS |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 7.3:-3321205 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 7.3:+3321003 | MS.gene67561:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 7.3:-3321175 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 7.3:-3321091 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 7.3:+3320546 | MS.gene67561:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 7.3:-3321107 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 7.3:+3320831 | MS.gene67561:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 7.3:-3321061 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 7.3:-3320836 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 7.3:+3321168 | MS.gene67561:CDS |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 7.3:-3320760 | None:intergenic |
| CAAAACAGAATGGATCATCA+AGG | 0.570283 | 7.3:+3320455 | None:intergenic |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 7.3:-3321229 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 7.3:+3320939 | MS.gene67561:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 7.3:+3320787 | MS.gene67561:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 7.3:-3321076 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 7.3:+3320759 | MS.gene67561:CDS |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 7.3:-3320609 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 7.3:+3321129 | MS.gene67561:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 7.3:-3320979 | None:intergenic |
| ACAACCAGAATCCGCAAATG+GGG | 0.594889 | 7.3:+3320480 | MS.gene67561:CDS |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 7.3:-3321226 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 7.3:-3320855 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 7.3:-3320527 | None:intergenic |
| AGCGGCAGTCAAATGCCGTA+CGG | 0.619913 | 7.3:+3320512 | MS.gene67561:CDS |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 7.3:-3320570 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 7.3:+3320832 | MS.gene67561:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 7.3:-3320770 | None:intergenic |
| AAAACAGAATGGATCATCAA+GGG | 0.625548 | 7.3:+3320456 | None:intergenic |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 7.3:-3321104 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 7.3:-3320882 | None:intergenic |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 7.3:+3321182 | MS.gene67561:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 7.3:-3321211 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 7.3:-3321094 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 7.3:-3320995 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 7.3:+3320778 | MS.gene67561:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 7.3:+3320578 | MS.gene67561:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 7.3:+3320982 | MS.gene67561:CDS |
| CAACCAGAATCCGCAAATGG+GGG | 0.676007 | 7.3:+3320481 | MS.gene67561:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 7.3:+3320900 | MS.gene67561:CDS |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 7.3:+3321019 | MS.gene67561:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 7.3:+3320547 | MS.gene67561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGATCAAGAAGATCATGA+AGG | + | chr7.3:3320778-3320797 | MS.gene67561:CDS | 35.0% | |
| ! | CAGTAACCTTTTCAATTTCC+TGG | - | chr7.3:3320730-3320749 | None:intergenic | 35.0% |
| ! | GACTGATATCTTTGATTTCC+TGG | + | chr7.3:3320961-3320980 | MS.gene67561:CDS | 35.0% |
| !! | TCATTTGGTTTGGCTGATAT+GGG | - | chr7.3:3320544-3320563 | None:intergenic | 35.0% |
| AAGCACCTGTCATATTTGCA+AGG | + | chr7.3:3320831-3320850 | MS.gene67561:CDS | 40.0% | |
| ACACTGAAGAGAACAAAAGG+AGG | + | chr7.3:3320900-3320919 | MS.gene67561:CDS | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | + | chr7.3:3320897-3320916 | MS.gene67561:CDS | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | + | chr7.3:3320832-3320851 | MS.gene67561:CDS | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | + | chr7.3:3320939-3320958 | MS.gene67561:CDS | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | + | chr7.3:3320546-3320565 | MS.gene67561:CDS | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | + | chr7.3:3320577-3320596 | MS.gene67561:CDS | 40.0% | |
| CCAGTACCAGGAAATTGAAA+AGG | + | chr7.3:3320721-3320740 | MS.gene67561:CDS | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | - | chr7.3:3320858-3320877 | None:intergenic | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | + | chr7.3:3320576-3320595 | MS.gene67561:CDS | 40.0% | |
| TATCAGCCAAACCAAATGAC+TGG | + | chr7.3:3320545-3320564 | MS.gene67561:CDS | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | - | chr7.3:3320724-3320743 | None:intergenic | 40.0% |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | - | chr7.3:3320901-3320920 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | - | chr7.3:3320545-3320564 | None:intergenic | 40.0% |
| !! | TGATATGGGTTAGATCCGTA+CGG | - | chr7.3:3320530-3320549 | None:intergenic | 40.0% |
| AACAACAGCTGCAATCCTTC+TGG | + | chr7.3:3320693-3320712 | MS.gene67561:CDS | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | - | chr7.3:3321009-3321028 | None:intergenic | 45.0% | |
| ACAACCAGAATCCGCAAATG+GGG | + | chr7.3:3320480-3320499 | MS.gene67561:CDS | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | - | chr7.3:3320575-3320594 | None:intergenic | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | - | chr7.3:3320773-3320792 | None:intergenic | 45.0% | |
| CACAACCAGAATCCGCAAAT+GGG | + | chr7.3:3320479-3320498 | MS.gene67561:CDS | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | - | chr7.3:3320574-3320593 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | + | chr7.3:3320787-3320806 | MS.gene67561:CDS | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | - | chr7.3:3321156-3321175 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | + | chr7.3:3320575-3320594 | MS.gene67561:CDS | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | + | chr7.3:3320853-3320872 | MS.gene67561:CDS | 45.0% | |
| TACATGTTTGGGTCCATCAC+AGG | - | chr7.3:3321145-3321164 | None:intergenic | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | + | chr7.3:3320547-3320566 | MS.gene67561:CDS | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | + | chr7.3:3320578-3320597 | MS.gene67561:CDS | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | - | chr7.3:3320573-3320592 | None:intergenic | 45.0% | |
| ! | CATAATGGGAAAGCCTGTGA+TGG | + | chr7.3:3321129-3321148 | MS.gene67561:CDS | 45.0% |
| !! | CACATTTGTGGTGCCATGTA+GGG | - | chr7.3:3321184-3321203 | None:intergenic | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | + | chr7.3:3321115-3321134 | MS.gene67561:CDS | 45.0% |
| !! | TGGAACTGCTGGTGTCATAA+TGG | + | chr7.3:3321114-3321133 | MS.gene67561:CDS | 45.0% |
| AATCCGCAAATGGGGGTTGT+CGG | + | chr7.3:3320488-3320507 | MS.gene67561:CDS | 50.0% | |
| AGAGGAACAATGCCTGTTGC+TGG | + | chr7.3:3321037-3321056 | MS.gene67561:CDS | 50.0% | |
| CAACCAGAATCCGCAAATGG+GGG | + | chr7.3:3320481-3320500 | MS.gene67561:CDS | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | - | chr7.3:3320839-3320858 | None:intergenic | 50.0% | |
| CCTACATGGCACCACAAATG+TGG | + | chr7.3:3321182-3321201 | MS.gene67561:CDS | 50.0% | |
| CTTCTGGTCAAACCAGTACC+AGG | + | chr7.3:3320709-3320728 | MS.gene67561:CDS | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | - | chr7.3:3321110-3321129 | None:intergenic | 50.0% | |
| GCACAACCAGAATCCGCAAA+TGG | + | chr7.3:3320478-3320497 | MS.gene67561:CDS | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | - | chr7.3:3320582-3320601 | None:intergenic | 50.0% | |
| GGACCTGAAAGATGAAGTGC+TGG | + | chr7.3:3321003-3321022 | MS.gene67561:CDS | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | - | chr7.3:3321157-3321176 | None:intergenic | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | - | chr7.3:3320769-3320788 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | - | chr7.3:3321111-3321130 | None:intergenic | 50.0% | |
| TGAGGTGGCATGTAGCAGTA+AGG | - | chr7.3:3321079-3321098 | None:intergenic | 50.0% | |
| ! | GCAACAGGCATTGTTCCTCT+TGG | - | chr7.3:3321037-3321056 | None:intergenic | 50.0% |
| ! | GTTGCTGCTGATGGATATGC+TGG | - | chr7.3:3320661-3320680 | None:intergenic | 50.0% |
| ! | TCATCTTTCAGGTCCTCACG+AGG | - | chr7.3:3320998-3321017 | None:intergenic | 50.0% |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | - | chr7.3:3321064-3321083 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | - | chr7.3:3321185-3321204 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | - | chr7.3:3320711-3320730 | None:intergenic | 50.0% |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | + | chr7.3:3321019-3321038 | MS.gene67561:CDS | 50.0% |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | - | chr7.3:3321179-3321198 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | - | chr7.3:3321180-3321199 | None:intergenic | 50.0% |
| ACAAATGTGGCCACAGCCTC+CGG | + | chr7.3:3321195-3321214 | MS.gene67561:CDS | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | - | chr7.3:3321107-3321126 | None:intergenic | 55.0% | |
| AGCGGCAGTCAAATGCCGTA+CGG | + | chr7.3:3320512-3320531 | MS.gene67561:CDS | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | - | chr7.3:3320885-3320904 | None:intergenic | 55.0% | |
| CAAATGGGGGTTGTCGGTAG+CGG | + | chr7.3:3320494-3320513 | MS.gene67561:CDS | 55.0% | |
| CAACCCCCATTTGCGGATTC+TGG | - | chr7.3:3320487-3320506 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | + | chr7.3:3320754-3320773 | MS.gene67561:CDS | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | - | chr7.3:3320982-3321001 | None:intergenic | 55.0% | |
| CTACCGACAACCCCCATTTG+CGG | - | chr7.3:3320494-3320513 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | + | chr7.3:3320982-3321001 | MS.gene67561:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | - | chr7.3:3320670-3320689 | None:intergenic | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | + | chr7.3:3320873-3320892 | MS.gene67561:CDS | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | - | chr7.3:3321178-3321197 | None:intergenic | 55.0% |
| AACCAAATGACTGGGGCCCC+AGG | + | chr7.3:3320554-3320573 | MS.gene67561:CDS | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | + | chr7.3:3320759-3320778 | MS.gene67561:CDS | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | - | chr7.3:3320559-3320578 | None:intergenic | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | + | chr7.3:3320617-3320636 | MS.gene67561:CDS | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | + | chr7.3:3320605-3320624 | MS.gene67561:CDS | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | - | chr7.3:3320886-3320905 | None:intergenic | 60.0% | |
| CCTCAGCATGCCTCCCAAGT+TGG | + | chr7.3:3321094-3321113 | MS.gene67561:CDS | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | - | chr7.3:3321052-3321071 | None:intergenic | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | - | chr7.3:3321196-3321215 | None:intergenic | 60.0% | |
| GGGGCCCCAGTCATTTGGTT+TGG | - | chr7.3:3320554-3320573 | None:intergenic | 60.0% | |
| TCAACCTGCTGGAGCTCAGC+TGG | + | chr7.3:3320616-3320635 | MS.gene67561:CDS | 60.0% | |
| TCAGCAGCCCCATCCCTACA+TGG | + | chr7.3:3321168-3321187 | MS.gene67561:CDS | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | - | chr7.3:3320763-3320782 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | - | chr7.3:3321094-3321113 | None:intergenic | 60.0% |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | - | chr7.3:3320612-3320631 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | - | chr7.3:3321097-3321116 | None:intergenic | 60.0% |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | + | chr7.3:3321103-3321122 | MS.gene67561:CDS | 60.0% |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | - | chr7.3:3321217-3321236 | None:intergenic | 60.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | - | chr7.3:3320623-3320642 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | - | chr7.3:3321214-3321233 | None:intergenic | 65.0% |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | + | chr7.3:3320593-3320612 | MS.gene67561:CDS | 65.0% |
| GGTCGCTGTTCCGGAGGCTG+TGG | - | chr7.3:3321208-3321227 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3320464 | 3321246 | 3320464 | ID=MS.gene67561 |
| chr7.3 | mRNA | 3320464 | 3321246 | 3320464 | ID=MS.gene67561.t1;Parent=MS.gene67561 |
| chr7.3 | exon | 3320464 | 3321246 | 3320464 | ID=MS.gene67561.t1.exon1;Parent=MS.gene67561.t1 |
| chr7.3 | CDS | 3320464 | 3321246 | 3320464 | ID=cds.MS.gene67561.t1;Parent=MS.gene67561.t1 |
| Gene Sequence |
| Protein sequence |
