AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67678

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67678.t1 MTR_4g108260 91.459 281 6 1 3 283 78 340 0.0 521
MS.gene67678.t1 MTR_7g009930 56.940 281 116 2 5 280 77 357 3.61e-109 320
MS.gene67678.t1 MTR_6g011560 55.282 284 118 4 5 280 82 364 3.37e-103 306
MS.gene67678.t1 MTR_6g011550 53.873 284 122 4 5 280 82 364 8.43e-100 297
MS.gene67678.t1 MTR_6g069630 48.188 276 140 2 8 280 61 336 1.94e-91 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67678.t1 AT3G47800 61.786 280 107 0 3 282 78 357 8.84e-129 370
MS.gene67678.t1 AT5G15140 57.651 281 115 2 3 280 207 486 2.68e-111 330
MS.gene67678.t1 AT3G17940 47.500 280 142 2 8 282 62 341 9.88e-92 275
MS.gene67678.t1 AT3G01260 41.429 280 135 7 5 280 168 422 7.91e-58 191

Find 78 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTATCACCGAACCCTTTC+TGG 0.147008 8.4:+18789307 None:intergenic
ACTGGTGTGGGTTTGTTTAC+TGG 0.147997 8.4:+18788689 None:intergenic
GTCTACTTCGGTGGTCTTAT+TGG 0.151365 8.4:-18789541 MS.gene67678:CDS
TTAGGCTTATTCACAGAATC+TGG 0.255239 8.4:+18788245 None:intergenic
AATCACACCGTTCAAATCTT+TGG 0.273898 8.4:-18788608 MS.gene67678:CDS
GCATGTTGTGCTAGATTTAC+TGG 0.284935 8.4:+18788671 None:intergenic
ATTTGACTTCCAACTTGTTT+TGG 0.291351 8.4:+18788500 None:intergenic
ACCTGTCTCAGGAAGGAAAA+TGG 0.309640 8.4:-18788390 MS.gene67678:CDS
TCTACTTCGGTGGTCTTATT+GGG 0.313290 8.4:-18789540 MS.gene67678:CDS
CGGATTCGAGTTTGCCTGTT+GGG 0.319058 8.4:+18788552 None:intergenic
ACACTTACGTCAAGCTTTCC+AGG 0.329020 8.4:+18788764 None:intergenic
ACAATCTGAGATGGAAAGTT+AGG 0.353204 8.4:+18788227 None:intergenic
GTTGCTTGAAAAGAACATAT+TGG 0.382460 8.4:-18788732 MS.gene67678:CDS
TATCATGGTTTATCGATTCA+TGG 0.386506 8.4:-18788180 MS.gene67678:CDS
TTATTGGGCGTGTGGCAAAT+AGG 0.397686 8.4:-18789525 MS.gene67678:CDS
CAAGTATGGTGGCATTGCTT+TGG 0.405496 8.4:-18788282 MS.gene67678:CDS
TGTGGGTTTGTTTACTGGCT+TGG 0.409918 8.4:+18788694 None:intergenic
AGTCAAATTAATGACCTTCC+TGG 0.412379 8.4:-18788485 MS.gene67678:CDS
TTGCTTGAAAAGAACATATT+GGG 0.414739 8.4:-18788731 MS.gene67678:CDS
ATCTAGCACAACATGCATAC+TGG 0.440235 8.4:-18788664 MS.gene67678:CDS
CACCACTGTTGTGGCCTCCT+AGG 0.441891 8.4:+18788639 None:intergenic
CAACATGCATACTGGAACCT+AGG 0.444782 8.4:-18788656 MS.gene67678:CDS
GGAGCTACATATCACAAGTA+TGG 0.454827 8.4:-18788296 MS.gene67678:CDS
TTTGGTTTAAGGAAATCATA+TGG 0.455507 8.4:+18788518 None:intergenic
GAAATTGCAGGTGGCCAGAA+AGG 0.457841 8.4:-18789321 MS.gene67678:intron
AAATTGCCAGCTAATGATCA+TGG 0.472562 8.4:-18789463 MS.gene67678:CDS
ATCATATGGCGTGTTCTTCA+CGG 0.473462 8.4:+18788532 None:intergenic
GATGATAAACTCATCCCAAC+AGG 0.473597 8.4:-18788566 MS.gene67678:CDS
TTCTTTCACTATACAAACCT+TGG 0.474623 8.4:+18788412 None:intergenic
TTCCTTAAACCAAAACAAGT+TGG 0.480970 8.4:-18788509 MS.gene67678:CDS
CCATCTCAGATTGTGAAGCC+TGG 0.483704 8.4:-18788218 MS.gene67678:CDS
TGGAGGAGCTCAATTCACTT+TGG 0.490944 8.4:-18789500 MS.gene67678:CDS
ATATGCTTGTATGTCTCTCC+AGG 0.492010 8.4:+18788200 None:intergenic
GCAGGTGGCCAGAAAGGGTT+CGG 0.495854 8.4:-18789315 MS.gene67678:intron
TGTGCTAGATTTACTGGTGT+GGG 0.510614 8.4:+18788677 None:intergenic
GGAGCTCAATTCACTTTGGA+TGG 0.518150 8.4:-18789496 MS.gene67678:CDS
TATAGTATTGCAATCCAACT+TGG 0.523209 8.4:+18788354 None:intergenic
CCAGGCTTCACAATCTGAGA+TGG 0.524924 8.4:+18788218 None:intergenic
GGGCGTGTGGCAAATAGGAT+TGG 0.526639 8.4:-18789520 MS.gene67678:CDS
AAGGGTTCGGTGATAACGTA+TGG 0.530622 8.4:-18789302 MS.gene67678:CDS
AACTACGCAATTGACGTGAA+TGG 0.533501 8.4:-18788449 MS.gene67678:CDS
TAGGCTTATTCACAGAATCT+GGG 0.535737 8.4:+18788246 None:intergenic
GGGATGAGTTTATCATCTAC+CGG 0.542823 8.4:+18788572 None:intergenic
ATAGTGAAAGAACCTGTCTC+AGG 0.544121 8.4:-18788401 MS.gene67678:CDS
GTGTTCCCATGATCATTAGC+TGG 0.546884 8.4:+18789457 None:intergenic
TTGTGCTAGATTTACTGGTG+TGG 0.547703 8.4:+18788676 None:intergenic
AAATTGCAGGTGGCCAGAAA+GGG 0.548265 8.4:-18789320 MS.gene67678:intron
TGAAATTTGATGCAGACTGA+TGG 0.555921 8.4:-18789565 MS.gene67678:intron
ACTGATACTAAAGGAAAGGA+TGG 0.557269 8.4:-18788317 MS.gene67678:CDS
CGGTGGTCTTATTGGGCGTG+TGG 0.557522 8.4:-18789533 MS.gene67678:CDS
CGTGTGGCAAATAGGATTGG+AGG 0.564047 8.4:-18789517 MS.gene67678:CDS
ACGGATTCGAGTTTGCCTGT+TGG 0.566013 8.4:+18788551 None:intergenic
TAATTGTTCAACAATGGCTA+AGG 0.569688 8.4:-18790080 None:intergenic
GTTGACTGATACTAAAGGAA+AGG 0.576122 8.4:-18788321 MS.gene67678:CDS
TTTATCATCTACCGGTGTGA+TGG 0.578356 8.4:+18788580 None:intergenic
GATCATGGGAACACACTCCA+TGG 0.584348 8.4:-18789448 MS.gene67678:intron
GGCATTGCTTTGGAGACACA+AGG 0.585444 8.4:-18788272 MS.gene67678:CDS
AATTGCCAGCTAATGATCAT+GGG 0.589702 8.4:-18789462 MS.gene67678:CDS
GAGTTGTGGTCAAACCAAGT+TGG 0.590032 8.4:-18788368 MS.gene67678:CDS
AGAGACATACAAGCATATCA+TGG 0.596154 8.4:-18788195 MS.gene67678:CDS
TGGTCAAAATCATTTAACCA+AGG 0.602850 8.4:-18788429 MS.gene67678:CDS
CAGACTGATGGAGTCTACTT+CGG 0.614831 8.4:-18789553 MS.gene67678:CDS
TGAAAGAACCTGTCTCAGGA+AGG 0.620515 8.4:-18788397 MS.gene67678:CDS
TTCACCATCAAAACTGTGGT+AGG 0.630989 8.4:+18789239 None:intergenic
GGAATGTTGACTGATACTAA+AGG 0.631864 8.4:-18788326 MS.gene67678:CDS
TAAGAATGTCACCACTGTTG+TGG 0.637458 8.4:+18788630 None:intergenic
CAGGAAGGAAAATGGAGTTG+TGG 0.640117 8.4:-18788382 MS.gene67678:CDS
GGATTGCAATACTATACTAG+TGG 0.642698 8.4:-18788347 MS.gene67678:CDS
TAATGTCGTATAAACCAGGA+AGG 0.653054 8.4:+18788471 None:intergenic
TAGTTAATGTCGTATAAACC+AGG 0.656726 8.4:+18788467 None:intergenic
CATGCATACTGGAACCTAGG+AGG 0.665406 8.4:-18788653 MS.gene67678:CDS
ACTGATGGAGTCTACTTCGG+TGG 0.669276 8.4:-18789550 MS.gene67678:CDS
GCTACATATCACAAGTATGG+TGG 0.672659 8.4:-18788293 MS.gene67678:CDS
AACCTAGGAGGCCACAACAG+TGG 0.673482 8.4:-18788641 MS.gene67678:CDS
CTTTGGTTCATCCATCACAC+CGG 0.680058 8.4:-18788591 MS.gene67678:CDS
CTTGTTCACCATCAAAACTG+TGG 0.689661 8.4:+18789235 None:intergenic
ATGGAAAGTAGCAGTTCACA+AGG 0.691394 8.4:-18789283 MS.gene67678:CDS
GGATGAACCAAAGATTTGAA+CGG 0.710916 8.4:+18788601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATATAAATATTAATG+TGG + chr8.4:18788402-18788421 None:intergenic 10.0%
!! GAATATTTAAATTATATATG+TGG + chr8.4:18789058-18789077 None:intergenic 10.0%
!!! TTCAAAATTTAAAATCAAAA+CGG + chr8.4:18789341-18789360 None:intergenic 10.0%
!!! TTTTATTTTATTTCATATCT+AGG - chr8.4:18788366-18788385 MS.gene67678:CDS 10.0%
!! ATAAATATTAATGTGGAATA+AGG + chr8.4:18788395-18788414 None:intergenic 15.0%
!! TAAATATTAATGTGGAATAA+GGG + chr8.4:18788394-18788413 None:intergenic 15.0%
!! TACTATATATAAGAGAAAAT+TGG - chr8.4:18788594-18788613 MS.gene67678:CDS 15.0%
!!! TTTTTTTATTTACTTTTCCA+GGG - chr8.4:18788424-18788443 MS.gene67678:CDS 15.0%
!!! TTTTTTTTATTTACTTTTCC+AGG - chr8.4:18788423-18788442 MS.gene67678:CDS 15.0%
!! ATATTAATATTAACGTACCA+TGG + chr8.4:18788811-18788830 None:intergenic 20.0%
!! ATTTAAATTATATATGTGGC+AGG + chr8.4:18789054-18789073 None:intergenic 20.0%
!! TACGATTCTTTGTAATATTA+AGG - chr8.4:18789183-18789202 MS.gene67678:intron 20.0%
!!! GGATTTTATGAGTTAAAAAA+AGG - chr8.4:18788265-18788284 MS.gene67678:CDS 20.0%
! TTAATCATTGATGAAATTGC+AGG - chr8.4:18788906-18788925 MS.gene67678:intron 25.0%
! TTGCTTGAAAAGAACATATT+GGG - chr8.4:18789508-18789527 MS.gene67678:CDS 25.0%
! TTTGCAAAATAAAACTCAAC+AGG - chr8.4:18789448-18789467 MS.gene67678:intron 25.0%
!! AGTTAAAAAAAGGAAGTATG+AGG - chr8.4:18788275-18788294 MS.gene67678:CDS 25.0%
!! GTTAAAAAAAGGAAGTATGA+GGG - chr8.4:18788276-18788295 MS.gene67678:CDS 25.0%
!! TTTGGTTTAAGGAAATCATA+TGG + chr8.4:18789724-18789743 None:intergenic 25.0%
!!! AGTTTTATTGCTACAAACAT+GGG + chr8.4:18789409-18789428 None:intergenic 25.0%
!!! TAGTTTTATTGCTACAAACA+TGG + chr8.4:18789410-18789429 None:intergenic 25.0%
!!! TTATTATTTTGTGTCCTCTT+GGG - chr8.4:18788187-18788206 MS.gene67678:CDS 25.0%
CAAAGAATCGTATACAAATG+AGG + chr8.4:18789175-18789194 None:intergenic 30.0%
CAAGAGGACACAAAATAATA+AGG + chr8.4:18788188-18788207 None:intergenic 30.0%
GTTGCTTGAAAAGAACATAT+TGG - chr8.4:18789507-18789526 MS.gene67678:CDS 30.0%
GTTTATGTACCTGATAAACA+TGG - chr8.4:18788334-18788353 MS.gene67678:CDS 30.0%
TAGTTAATGTCGTATAAACC+AGG + chr8.4:18789775-18789794 None:intergenic 30.0%
TATAGTATTGCAATCCAACT+TGG + chr8.4:18789888-18789907 None:intergenic 30.0%
TGGTCAAAATCATTTAACCA+AGG - chr8.4:18789810-18789829 MS.gene67678:intron 30.0%
TTCCTTAAACCAAAACAAGT+TGG - chr8.4:18789730-18789749 MS.gene67678:intron 30.0%
TTCTTTCACTATACAAACCT+TGG + chr8.4:18789830-18789849 None:intergenic 30.0%
! AGGGTTAATTTGACAAACTA+TGG - chr8.4:18788295-18788314 MS.gene67678:CDS 30.0%
! ATGCATTTGGTTCAAATTGT+GGG - chr8.4:18788628-18788647 MS.gene67678:CDS 30.0%
!! ATTTGACTTCCAACTTGTTT+TGG + chr8.4:18789742-18789761 None:intergenic 30.0%
!! CTTATTATTTTGTGTCCTCT+TGG - chr8.4:18788186-18788205 MS.gene67678:CDS 30.0%
!! GTTTTATTGCTACAAACATG+GGG + chr8.4:18789408-18789427 None:intergenic 30.0%
!! TATCATGGTTTATCGATTCA+TGG - chr8.4:18790059-18790078 MS.gene67678:intron 30.0%
!! TATTATTTTGTGTCCTCTTG+GGG - chr8.4:18788188-18788207 MS.gene67678:CDS 30.0%
!!! TTCCAACTTGTTTTGGTTTA+AGG + chr8.4:18789735-18789754 None:intergenic 30.0%
AAATTGCCAGCTAATGATCA+TGG - chr8.4:18788776-18788795 MS.gene67678:intron 35.0%
AATCACACCGTTCAAATCTT+TGG - chr8.4:18789631-18789650 MS.gene67678:intron 35.0%
AATTGCCAGCTAATGATCAT+GGG - chr8.4:18788777-18788796 MS.gene67678:intron 35.0%
ACTGATACTAAAGGAAAGGA+TGG - chr8.4:18789922-18789941 MS.gene67678:intron 35.0%
AGAGACATACAAGCATATCA+TGG - chr8.4:18790044-18790063 MS.gene67678:intron 35.0%
AGTCAAATTAATGACCTTCC+TGG - chr8.4:18789754-18789773 MS.gene67678:intron 35.0%
AGTGAGAAAAGTGAGAAGAT+TGG - chr8.4:18788244-18788263 MS.gene67678:CDS 35.0%
ATCATTGATGAAATTGCAGG+TGG - chr8.4:18788909-18788928 MS.gene67678:intron 35.0%
CAAGACAAACCATGTTTATC+AGG + chr8.4:18788346-18788365 None:intergenic 35.0%
GGATGAACCAAAGATTTGAA+CGG + chr8.4:18789641-18789660 None:intergenic 35.0%
GGATTGCAATACTATACTAG+TGG - chr8.4:18789892-18789911 MS.gene67678:intron 35.0%
GTTGACTGATACTAAAGGAA+AGG - chr8.4:18789918-18789937 MS.gene67678:intron 35.0%
TAATGTCGTATAAACCAGGA+AGG + chr8.4:18789771-18789790 None:intergenic 35.0%
TAGGCTTATTCACAGAATCT+GGG + chr8.4:18789996-18790015 None:intergenic 35.0%
TCATACCTCATATTGCTCAA+TGG + chr8.4:18788481-18788500 None:intergenic 35.0%
TGAAATTTGATGCAGACTGA+TGG - chr8.4:18788674-18788693 MS.gene67678:CDS 35.0%
TGATTCCATTGAGCAATATG+AGG - chr8.4:18788473-18788492 MS.gene67678:CDS 35.0%
TTAGGCTTATTCACAGAATC+TGG + chr8.4:18789997-18790016 None:intergenic 35.0%
! ACAATCTGAGATGGAAAGTT+AGG + chr8.4:18790015-18790034 None:intergenic 35.0%
! CTTGGTTGTTCGTTTTATCA+CGG - chr8.4:18789239-18789258 MS.gene67678:CDS 35.0%
! GATGCATTTGGTTCAAATTG+TGG - chr8.4:18788627-18788646 MS.gene67678:CDS 35.0%
! GGAATGTTGACTGATACTAA+AGG - chr8.4:18789913-18789932 MS.gene67678:intron 35.0%
! GGATCAATAGTTGATGCATT+TGG - chr8.4:18788615-18788634 MS.gene67678:CDS 35.0%
! TAAAACTCAACAGGTTTTCC+TGG - chr8.4:18789457-18789476 MS.gene67678:CDS 35.0%
!! ATTTACTTTTCCAGGGAAAG+TGG - chr8.4:18788431-18788450 MS.gene67678:CDS 35.0%
!! TTTACCTACCACAGTTTTGA+TGG - chr8.4:18788996-18789015 MS.gene67678:intron 35.0%
AAAGTGGCTGATGTTGTTCT+TGG - chr8.4:18788447-18788466 MS.gene67678:CDS 40.0%
AACTACGCAATTGACGTGAA+TGG - chr8.4:18789790-18789809 MS.gene67678:intron 40.0%
AATGTGCATAAGTGTGAACC+AGG + chr8.4:18788216-18788235 None:intergenic 40.0%
ATAGTGAAAGAACCTGTCTC+AGG - chr8.4:18789838-18789857 MS.gene67678:intron 40.0%
ATATGCTTGTATGTCTCTCC+AGG + chr8.4:18790042-18790061 None:intergenic 40.0%
ATCATATGGCGTGTTCTTCA+CGG + chr8.4:18789710-18789729 None:intergenic 40.0%
ATCTAGCACAACATGCATAC+TGG - chr8.4:18789575-18789594 MS.gene67678:intron 40.0%
ATGGAAAGTAGCAGTTCACA+AGG - chr8.4:18788956-18788975 MS.gene67678:intron 40.0%
CGTGATAAAACGAACAACCA+AGG + chr8.4:18789241-18789260 None:intergenic 40.0%
CTTGTTCACCATCAAAACTG+TGG + chr8.4:18789007-18789026 None:intergenic 40.0%
GATGATAAACTCATCCCAAC+AGG - chr8.4:18789673-18789692 MS.gene67678:intron 40.0%
GCACTAACGGTGTGAATTTA+GGG + chr8.4:18789296-18789315 None:intergenic 40.0%
GCATGTTGTGCTAGATTTAC+TGG + chr8.4:18789571-18789590 None:intergenic 40.0%
GCTACATATCACAAGTATGG+TGG - chr8.4:18789946-18789965 MS.gene67678:intron 40.0%
GGAGCTACATATCACAAGTA+TGG - chr8.4:18789943-18789962 MS.gene67678:intron 40.0%
GGGATGAGTTTATCATCTAC+CGG + chr8.4:18789670-18789689 None:intergenic 40.0%
GTATACAAATGAGGCTGATG+TGG + chr8.4:18789166-18789185 None:intergenic 40.0%
GTTACCACAATCGAAAACCT+TGG - chr8.4:18789221-18789240 MS.gene67678:intron 40.0%
TAAGAATGTCACCACTGTTG+TGG + chr8.4:18789612-18789631 None:intergenic 40.0%
TGCACTAACGGTGTGAATTT+AGG + chr8.4:18789297-18789316 None:intergenic 40.0%
TGTGCTAGATTTACTGGTGT+GGG + chr8.4:18789565-18789584 None:intergenic 40.0%
TTCACCATCAAAACTGTGGT+AGG + chr8.4:18789003-18789022 None:intergenic 40.0%
TTGTGCTAGATTTACTGGTG+TGG + chr8.4:18789566-18789585 None:intergenic 40.0%
TTTATCATCTACCGGTGTGA+TGG + chr8.4:18789662-18789681 None:intergenic 40.0%
! ACAACCAAGGTTTTCGATTG+TGG + chr8.4:18789228-18789247 None:intergenic 40.0%
!! TCTACTTCGGTGGTCTTATT+GGG - chr8.4:18788699-18788718 MS.gene67678:CDS 40.0%
!!! CACAGTTTTGATGGTGAACA+AGG - chr8.4:18789005-18789024 MS.gene67678:intron 40.0%
AAATTGCAGGTGGCCAGAAA+GGG - chr8.4:18788919-18788938 MS.gene67678:intron 45.0%
ACACTTACGTCAAGCTTTCC+AGG + chr8.4:18789478-18789497 None:intergenic 45.0%
ACCTGTCTCAGGAAGGAAAA+TGG - chr8.4:18789849-18789868 MS.gene67678:intron 45.0%
CAACATGCATACTGGAACCT+AGG - chr8.4:18789583-18789602 MS.gene67678:intron 45.0%
CAAGTATGGTGGCATTGCTT+TGG - chr8.4:18789957-18789976 MS.gene67678:intron 45.0%
CAGACTGATGGAGTCTACTT+CGG - chr8.4:18788686-18788705 MS.gene67678:CDS 45.0%
CAGGAAGGAAAATGGAGTTG+TGG - chr8.4:18789857-18789876 MS.gene67678:intron 45.0%
GACAGTCATCGATGCACTAA+CGG + chr8.4:18789309-18789328 None:intergenic 45.0%
GAGTTGTGGTCAAACCAAGT+TGG - chr8.4:18789871-18789890 MS.gene67678:intron 45.0%
GGAGCTCAATTCACTTTGGA+TGG - chr8.4:18788743-18788762 MS.gene67678:CDS 45.0%
GTGTTCCCATGATCATTAGC+TGG + chr8.4:18788785-18788804 None:intergenic 45.0%
TGAAAGAACCTGTCTCAGGA+AGG - chr8.4:18789842-18789861 MS.gene67678:intron 45.0%
TGGAGGAGCTCAATTCACTT+TGG - chr8.4:18788739-18788758 MS.gene67678:CDS 45.0%
TTATTGGGCGTGTGGCAAAT+AGG - chr8.4:18788714-18788733 MS.gene67678:CDS 45.0%
! ACTGGTGTGGGTTTGTTTAC+TGG + chr8.4:18789553-18789572 None:intergenic 45.0%
! CTTTGGTTCATCCATCACAC+CGG - chr8.4:18789648-18789667 MS.gene67678:intron 45.0%
! TCCATTTTCCTTCCTGAGAC+AGG + chr8.4:18789853-18789872 None:intergenic 45.0%
! TGTGGGTTTGTTTACTGGCT+TGG + chr8.4:18789548-18789567 None:intergenic 45.0%
!! AAGGGTTCGGTGATAACGTA+TGG - chr8.4:18788937-18788956 MS.gene67678:intron 45.0%
!! GTCTACTTCGGTGGTCTTAT+TGG - chr8.4:18788698-18788717 MS.gene67678:CDS 45.0%
ACTGATGGAGTCTACTTCGG+TGG - chr8.4:18788689-18788708 MS.gene67678:CDS 50.0%
CATGCATACTGGAACCTAGG+AGG - chr8.4:18789586-18789605 MS.gene67678:intron 50.0%
CCAGGCTTCACAATCTGAGA+TGG + chr8.4:18790024-18790043 None:intergenic 50.0%
CCATCTCAGATTGTGAAGCC+TGG - chr8.4:18790021-18790040 MS.gene67678:intron 50.0%
CGTGTGGCAAATAGGATTGG+AGG - chr8.4:18788722-18788741 MS.gene67678:CDS 50.0%
CGTTATCACCGAACCCTTTC+TGG + chr8.4:18788935-18788954 None:intergenic 50.0%
GAAATTGCAGGTGGCCAGAA+AGG - chr8.4:18788918-18788937 MS.gene67678:intron 50.0%
GATCATGGGAACACACTCCA+TGG - chr8.4:18788791-18788810 MS.gene67678:intron 50.0%
TGTTGCTGCGACTGCGTTTA+AGG - chr8.4:18789140-18789159 MS.gene67678:intron 50.0%
! ACAACATCAGCCACTTTCCC+TGG + chr8.4:18788444-18788463 None:intergenic 50.0%
! ACGGATTCGAGTTTGCCTGT+TGG + chr8.4:18789691-18789710 None:intergenic 50.0%
! CGGATTCGAGTTTGCCTGTT+GGG + chr8.4:18789690-18789709 None:intergenic 50.0%
!! GGCATTGCTTTGGAGACACA+AGG - chr8.4:18789967-18789986 MS.gene67678:intron 50.0%
AACCTAGGAGGCCACAACAG+TGG - chr8.4:18789598-18789617 MS.gene67678:intron 55.0%
GGGCGTGTGGCAAATAGGAT+TGG - chr8.4:18788719-18788738 MS.gene67678:CDS 55.0%
CACCACTGTTGTGGCCTCCT+AGG + chr8.4:18789603-18789622 None:intergenic 60.0%
GCAGGTGGCCAGAAAGGGTT+CGG - chr8.4:18788924-18788943 MS.gene67678:intron 60.0%
TGTGAACCAGGAGCCCCAAG+AGG + chr8.4:18788204-18788223 None:intergenic 60.0%
TTGTGTCCTCTTGGGGCTCC+TGG - chr8.4:18788195-18788214 MS.gene67678:CDS 60.0%
!! CGGTGGTCTTATTGGGCGTG+TGG - chr8.4:18788706-18788725 MS.gene67678:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 18788172 18790089 18788172 ID=MS.gene67678
chr8.4 mRNA 18788172 18790089 18788172 ID=MS.gene67678.t1;Parent=MS.gene67678
chr8.4 exon 18790081 18790089 18790081 ID=MS.gene67678.t1.exon1;Parent=MS.gene67678.t1
chr8.4 CDS 18790081 18790089 18790081 ID=cds.MS.gene67678.t1;Parent=MS.gene67678.t1
chr8.4 exon 18789449 18789572 18789449 ID=MS.gene67678.t1.exon2;Parent=MS.gene67678.t1
chr8.4 CDS 18789449 18789572 18789449 ID=cds.MS.gene67678.t1;Parent=MS.gene67678.t1
chr8.4 exon 18789235 18789333 18789235 ID=MS.gene67678.t1.exon3;Parent=MS.gene67678.t1
chr8.4 CDS 18789235 18789333 18789235 ID=cds.MS.gene67678.t1;Parent=MS.gene67678.t1
chr8.4 exon 18788172 18788791 18788172 ID=MS.gene67678.t1.exon4;Parent=MS.gene67678.t1
chr8.4 CDS 18788172 18788791 18788172 ID=cds.MS.gene67678.t1;Parent=MS.gene67678.t1
Gene Sequence

>MS.gene67678

ATGGCTAAGGTATCCTTATTATTTTGTGTCCTCTTGGGGCTCCTGGTTCACACTTATGCACATTCACATAAAAGTGAGAAAAGTGAGAAGATTGGATTTTATGAGTTAAAAAAAGGAAGTATGAGGGTTAATTTGACAAACTATGGTGCTTCAATTGTCGCTGTTTATGTACCTGATAAACATGGTTTGTCTTGTTTTATTTTATTTCATATCTAGGATCCCTTATTCCACATTAATATTTATATAACTTTTTTTTTTTATTTACTTTTCCAGGGAAAGTGGCTGATGTTGTTCTTGGCTATGATTCCATTGAGCAATATGAGGTATGATTAATTCATTGTTCTTTTCTTTAATTTGATAAATTGAAAATGAAAATGTAAAATATAATTCAAAATAAATAAATATTATTAGAACTAATTTGATACTATATATAAGAGAAAATTGGATCAATAGTTGATGCATTTGGTTCAAATTGTGGGAGATTAAATACACAAAATGATGTTGAAATTTGATGCAGACTGATGGAGTCTACTTCGGTGGTCTTATTGGGCGTGTGGCAAATAGGATTGGAGGAGCTCAATTCACTTTGGATGGTAAAACATACAAATTGCCAGCTAATGATCATGGGAACACACTCCATGGTACGTTAATATTAATATATTTAAGTTTCTGATAAATAATTTACATACACACATTACAAATTCATGCAATGATGCATTATTTACATTTTCTTATTAATCATTGATGAAATTGCAGGTGGCCAGAAAGGGTTCGGTGATAACGTATGGAAAGTAGCAGTTCACAAGGATGATAGTCATGTAACATTTACCTACCACAGTTTTGATGGTGAACAAGGTTTGTACTTTCATTTAATTACTGCCTGCCACATATATAATTTAAATATTCAGAGTCTTTAAAAAAGTTCTTGAATGCAATTTGCAAATTGCAATGTGACATCAAGATTTTGATGTTGCTGCGACTGCGTTTAAGGCCACATCAGCCTCATTTGTATACGATTCTTTGTAATATTAAGGATCACGACACAGACTGTTACCACAATCGAAAACCTTGGTTGTTCGTTTTATCACGGCAACATTGATCAAGATTCTCTGATCAAAATACCCTAAATTCACACCGTTAGTGCATCGATGACTGTCAAGATTAAACCGTTTTGATTTTAAATTTTGAAGAAAAAAATTAAAATCTGCATATTTTGTAAAGTATCTGATGCAGCCCCATGTTTGTAGCAATAAAACTAACATTTTGCATTATTTTCTTTGCAAAATAAAACTCAACAGGTTTTCCTGGAAAGCTTGACGTAAGTGTGACATACATGTTGCTTGAAAAGAACATATTGGGTGTGAAAATGACTGCCAAGCCAGTAAACAAACCCACACCAGTAAATCTAGCACAACATGCATACTGGAACCTAGGAGGCCACAACAGTGGTGACATTCTTAATCACACCGTTCAAATCTTTGGTTCATCCATCACACCGGTAGATGATAAACTCATCCCAACAGGCAAACTCGAATCCGTGAAGAACACGCCATATGATTTCCTTAAACCAAAACAAGTTGGAAGTCAAATTAATGACCTTCCTGGTTTATACGACATTAACTACGCAATTGACGTGAATGGTCAAAATCATTTAACCAAGGTTTGTATAGTGAAAGAACCTGTCTCAGGAAGGAAAATGGAGTTGTGGTCAAACCAAGTTGGATTGCAATACTATACTAGTGGAATGTTGACTGATACTAAAGGAAAGGATGGAGCTACATATCACAAGTATGGTGGCATTGCTTTGGAGACACAAGGTTTCCCAGATTCTGTGAATAAGCCTAACTTTCCATCTCAGATTGTGAAGCCTGGAGAGACATACAAGCATATCATGGTTTATCGATTCATGGCTAGCTAG
Protein sequence

>MS.gene67678.t1

MAKTDGVYFGGLIGRVANRIGGAQFTLDGKTYKLPANDHGNTLHGGQKGFGDNVWKVAVHKDDSHVTFTYHSFDGEQGFPGKLDVSVTYMLLEKNILGVKMTAKPVNKPTPVNLAQHAYWNLGGHNSGDILNHTVQIFGSSITPVDDKLIPTGKLESVKNTPYDFLKPKQVGSQINDLPGLYDINYAIDVNGQNHLTKVCIVKEPVSGRKMELWSNQVGLQYYTSGMLTDTKGKDGATYHKYGGIALETQGFPDSVNKPNFPSQIVKPGETYKHIMVYRFMAS