Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68003.t1 | XP_003618748.1 | 97 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 1.30E-86 | 328.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68003.t1 | G7KMS6 | 97.0 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 9.6e-87 | 328.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055206 | MS.gene68003 | -0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene68003 | -0.815752 | 7.87E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68003.t1 | MTR_6g018430 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 2.73e-119 | 334 |
| MS.gene68003.t1 | MTR_8g104210 | 49.669 | 151 | 65 | 4 | 28 | 168 | 14 | 163 | 4.77e-35 | 120 |
| MS.gene68003.t1 | MTR_8g104210 | 49.669 | 151 | 65 | 4 | 28 | 168 | 23 | 172 | 4.79e-35 | 120 |
| MS.gene68003.t1 | MTR_1g110760 | 46.203 | 158 | 68 | 5 | 27 | 168 | 4 | 160 | 1.99e-31 | 111 |
| MS.gene68003.t1 | MTR_6g084470 | 42.697 | 178 | 81 | 7 | 1 | 168 | 1 | 167 | 4.48e-30 | 108 |
| MS.gene68003.t1 | MTR_4g087400 | 44.318 | 176 | 55 | 5 | 1 | 168 | 1 | 141 | 2.50e-28 | 102 |
| MS.gene68003.t1 | MTR_1g051170 | 43.243 | 185 | 57 | 6 | 1 | 168 | 1 | 154 | 3.06e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68003.t1 | AT5G16110 | 53.005 | 183 | 66 | 5 | 1 | 168 | 67 | 244 | 4.35e-50 | 161 |
| MS.gene68003.t1 | AT3G02555 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.28e-44 | 144 |
| MS.gene68003.t1 | AT3G02555 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.28e-44 | 144 |
| MS.gene68003.t1 | AT1G68490 | 46.486 | 185 | 80 | 9 | 1 | 168 | 1 | 183 | 2.05e-40 | 135 |
| MS.gene68003.t1 | AT1G13390 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.72e-32 | 113 |
| MS.gene68003.t1 | AT1G13390 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.72e-32 | 113 |
Find 52 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCGGGATGCAGAATT+TGG | 0.163389 | 6.1:+4334764 | None:intergenic |
| CAGCAGGGACGCTTGAATTC+TGG | 0.294975 | 6.1:+4334663 | None:intergenic |
| CCGGCTGCCGTTAGAGTAGA+AGG | 0.314222 | 6.1:-4334710 | MS.gene68003:CDS |
| CCTAACACATCCACCTTTGC+GGG | 0.345952 | 6.1:+4334751 | None:intergenic |
| TTGGTCCAGGATGCTCGATT+TGG | 0.359597 | 6.1:-4334827 | MS.gene68003:CDS |
| TTTCCGTGTCTCCACCGGTC+AGG | 0.370731 | 6.1:-4334862 | MS.gene68003:CDS |
| AAGGGTTCGATTGCCTCAAC+AGG | 0.378556 | 6.1:-4334691 | MS.gene68003:CDS |
| GGATGTGTTAGGATGAGTTT+TGG | 0.398776 | 6.1:-4334740 | MS.gene68003:CDS |
| GTCCTAAGCCACGACGAGTC+GGG | 0.412417 | 6.1:-4336084 | MS.gene68003:CDS |
| TTCCGTGTCTCCACCGGTCA+GGG | 0.433361 | 6.1:-4334861 | MS.gene68003:CDS |
| CCCGCAAAGGTGGATGTGTT+AGG | 0.445900 | 6.1:-4334751 | MS.gene68003:CDS |
| ACCCCGACTCGTCGTGGCTT+AGG | 0.455948 | 6.1:+4336082 | None:intergenic |
| GGCTGCCAATCCCTTGGTCC+AGG | 0.459812 | 6.1:-4334840 | MS.gene68003:CDS |
| TCCTAACACATCCACCTTTG+CGG | 0.472579 | 6.1:+4334750 | None:intergenic |
| TCCTTCAACAGGAGAGTCAC+GGG | 0.477973 | 6.1:-4334925 | MS.gene68003:intron |
| AAGGGATTGGCAGCCCTGAC+CGG | 0.489912 | 6.1:+4334848 | None:intergenic |
| AGCATCCTGGACCAAGGGAT+TGG | 0.490235 | 6.1:+4334835 | None:intergenic |
| TTGGAGATGGCAAGCCTGAT+GGG | 0.496255 | 6.1:+4334783 | None:intergenic |
| CGGGATGCAGAATTTGGAGA+TGG | 0.500725 | 6.1:+4334770 | None:intergenic |
| CCTTCTACTCTAACGGCAGC+CGG | 0.501686 | 6.1:+4334710 | None:intergenic |
| GGTCAGGGCTGCCAATCCCT+TGG | 0.502507 | 6.1:-4334846 | MS.gene68003:CDS |
| CGTTTCCAAATCGAGCATCC+TGG | 0.506071 | 6.1:+4334822 | None:intergenic |
| ATTATATCATCATCCCCATC+AGG | 0.516104 | 6.1:-4334797 | MS.gene68003:CDS |
| CATCTCTTCACAAGCTGCAA+AGG | 0.522362 | 6.1:+4336150 | None:intergenic |
| ATGGAATGTTAAGCGACAGC+AGG | 0.533461 | 6.1:+4334647 | None:intergenic |
| TTCCTTCAACAGGAGAGTCA+CGG | 0.541824 | 6.1:-4334926 | MS.gene68003:intron |
| TGAAATCTCAATTGTCGCAC+AGG | 0.546029 | 6.1:+4336046 | None:intergenic |
| TTTGGAGATGGCAAGCCTGA+TGG | 0.546888 | 6.1:+4334782 | None:intergenic |
| TCCTAAGCCACGACGAGTCG+GGG | 0.547817 | 6.1:-4336083 | MS.gene68003:CDS |
| AGCCCTGACCGGTGGAGACA+CGG | 0.552443 | 6.1:+4334859 | None:intergenic |
| TGTTCATAGTCAACAAGCTG+AGG | 0.552611 | 6.1:-4335932 | MS.gene68003:intron |
| GTTCATAGTCAACAAGCTGA+GGG | 0.558392 | 6.1:-4335931 | MS.gene68003:intron |
| ATCGAACCCTTCTACTCTAA+CGG | 0.568820 | 6.1:+4334703 | None:intergenic |
| AATTCTGGCGATCCCTGTTG+AGG | 0.572292 | 6.1:+4334678 | None:intergenic |
| AATTCTGCATCCCGCAAAGG+TGG | 0.573238 | 6.1:-4334761 | MS.gene68003:CDS |
| AGGCTCCTTGTGATCAGTAA+TGG | 0.576308 | 6.1:+4336114 | None:intergenic |
| TGTCCTAAGCCACGACGAGT+CGG | 0.584427 | 6.1:-4336085 | MS.gene68003:CDS |
| GGATTGGCAGCCCTGACCGG+TGG | 0.587907 | 6.1:+4334851 | None:intergenic |
| CCAAATTCTGCATCCCGCAA+AGG | 0.597293 | 6.1:-4334764 | MS.gene68003:CDS |
| AAATCGAGCATCCTGGACCA+AGG | 0.614921 | 6.1:+4334829 | None:intergenic |
| TGGAATGTTAAGCGACAGCA+GGG | 0.618138 | 6.1:+4334648 | None:intergenic |
| GCAGCTTGTGAAGAGATGAG+AGG | 0.621316 | 6.1:-4336145 | MS.gene68003:CDS |
| GACAAGACCCCGACTCGTCG+TGG | 0.623519 | 6.1:+4336076 | None:intergenic |
| CGTTCTGCTGAAGACTGTAA+CGG | 0.626857 | 6.1:+4336173 | None:intergenic |
| AATCGAGCATCCTGGACCAA+GGG | 0.628072 | 6.1:+4334830 | None:intergenic |
| GGGTTCTGATTCAAAAGCTG+CGG | 0.642823 | 6.1:-4335911 | MS.gene68003:CDS |
| AGTTACCATTACTGATCACA+AGG | 0.652918 | 6.1:-4336119 | MS.gene68003:CDS |
| TGGAGATGGCAAGCCTGATG+GGG | 0.657463 | 6.1:+4334784 | None:intergenic |
| CGGCTGCCGTTAGAGTAGAA+GGG | 0.675818 | 6.1:-4334709 | MS.gene68003:CDS |
| AGGGTTCGATTGCCTCAACA+GGG | 0.682124 | 6.1:-4334690 | MS.gene68003:CDS |
| CCTTCAACAGGAGAGTCACG+GGG | 0.682882 | 6.1:-4334924 | MS.gene68003:intron |
| CGTGGCTTAGGACAAATGAG+AGG | 0.704524 | 6.1:+4336094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTGATTTTGTTAAA+TGG | - | chr6.1:4335468-4335487 | MS.gene68003:intron | 10.0% |
| !! | CATTAAAATACTAAAATGAT+AGG | + | chr6.1:4335547-4335566 | None:intergenic | 15.0% |
| !!! | CTTTAATTTATACTGTTTTT+GGG | - | chr6.1:4335394-4335413 | MS.gene68003:intron | 15.0% |
| !!! | TATTTTAATGTTCTGATTTT+TGG | - | chr6.1:4335557-4335576 | MS.gene68003:intron | 15.0% |
| !!! | TCTTTAATTTATACTGTTTT+TGG | - | chr6.1:4335393-4335412 | MS.gene68003:intron | 15.0% |
| !! | AAACAAACATAACAAAATCA+TGG | + | chr6.1:4335684-4335703 | None:intergenic | 20.0% |
| !! | AGTATAAATTAAAGATAACC+AGG | + | chr6.1:4335388-4335407 | None:intergenic | 20.0% |
| !!! | AATTAATCGAAGTTTGAAAT+CGG | + | chr6.1:4335875-4335894 | None:intergenic | 20.0% |
| ! | ATTGACATTGAATATTGTTC+TGG | - | chr6.1:4334837-4334856 | MS.gene68003:CDS | 25.0% |
| ! | CCTATTTCATAAAGATAACT+GGG | + | chr6.1:4335268-4335287 | None:intergenic | 25.0% |
| ! | TCCTATTTCATAAAGATAAC+TGG | + | chr6.1:4335269-4335288 | None:intergenic | 25.0% |
| !! | ATGATTAGTAATTTTCCTGT+AGG | - | chr6.1:4335738-4335757 | MS.gene68003:intron | 25.0% |
| AAATGTCTGTGTGATAATCT+TGG | - | chr6.1:4335032-4335051 | MS.gene68003:intron | 30.0% | |
| AATTTGTCGAGCTCATATTT+AGG | - | chr6.1:4334994-4335013 | MS.gene68003:intron | 30.0% | |
| CAAAAATCACATTTACCTAC+AGG | + | chr6.1:4335756-4335775 | None:intergenic | 30.0% | |
| CCCAGTTATCTTTATGAAAT+AGG | - | chr6.1:4335265-4335284 | MS.gene68003:intron | 30.0% | |
| TAAAGATAACCAGGCAAAAA+AGG | + | chr6.1:4335379-4335398 | None:intergenic | 30.0% | |
| TGTTCTCTTAGAAAAAGAGT+TGG | - | chr6.1:4335493-4335512 | MS.gene68003:intron | 30.0% | |
| ! | CTGTAGGTAAATGTGATTTT+TGG | - | chr6.1:4335754-4335773 | MS.gene68003:intron | 30.0% |
| ! | GGATTCGTCTTATTATTAGT+CGG | - | chr6.1:4335514-4335533 | MS.gene68003:intron | 30.0% |
| !! | CTTATTAACGAAGGCATTAA+TGG | + | chr6.1:4335420-4335439 | None:intergenic | 30.0% |
| AAATAGGATTGCGAGATTCT+TGG | - | chr6.1:4335281-4335300 | MS.gene68003:intron | 35.0% | |
| AGTTACCATTACTGATCACA+AGG | - | chr6.1:4334714-4334733 | MS.gene68003:CDS | 35.0% | |
| ATTATATCATCATCCCCATC+AGG | - | chr6.1:4336036-4336055 | MS.gene68003:intron | 35.0% | |
| CTAATCATATTCAACAAGCG+TGG | + | chr6.1:4335726-4335745 | None:intergenic | 35.0% | |
| CTTCTAGTCAAACTGAGATT+TGG | + | chr6.1:4335817-4335836 | None:intergenic | 35.0% | |
| TAAAGATAACTGGGCAAATC+AGG | + | chr6.1:4335259-4335278 | None:intergenic | 35.0% | |
| TAAGTTGTGTTGTCAATTGC+AGG | + | chr6.1:4335603-4335622 | None:intergenic | 35.0% | |
| TCAAATTACACTGCACTACT+AGG | + | chr6.1:4335061-4335080 | None:intergenic | 35.0% | |
| ! | AATAAGACACACGGTTTGTT+TGG | - | chr6.1:4335434-4335453 | MS.gene68003:intron | 35.0% |
| ! | TTGCATTCTTTTCCTTCAAC+AGG | - | chr6.1:4335897-4335916 | MS.gene68003:CDS | 35.0% |
| !! | GCTTGACATGATTTTTGAGA+AGG | - | chr6.1:4334952-4334971 | MS.gene68003:intron | 35.0% |
| !! | TATTGTTCTGGATGCCTTTT+AGG | - | chr6.1:4334849-4334868 | MS.gene68003:CDS | 35.0% |
| !!! | CAAGTGTATGTTTTGATGCA+CGG | - | chr6.1:4335625-4335644 | MS.gene68003:intron | 35.0% |
| !!! | GATGAGTTTTGGACTTAAAC+CGG | - | chr6.1:4336104-4336123 | MS.gene68003:CDS | 35.0% |
| !!! | TATGTTTTGATGCACGGTTA+AGG | - | chr6.1:4335631-4335650 | MS.gene68003:intron | 35.0% |
| ATCGAACCCTTCTACTCTAA+CGG | + | chr6.1:4336133-4336152 | None:intergenic | 40.0% | |
| GCCTTCGTTAATAAGACACA+CGG | - | chr6.1:4335425-4335444 | MS.gene68003:intron | 40.0% | |
| GCTGCATATGTTGTCAATCA+TGG | + | chr6.1:4335135-4335154 | None:intergenic | 40.0% | |
| GGAAAAATATGGAGGAGATG+AGG | + | chr6.1:4335956-4335975 | None:intergenic | 40.0% | |
| GTTCATAGTCAACAAGCTGA+GGG | - | chr6.1:4334902-4334921 | MS.gene68003:CDS | 40.0% | |
| TCGAGCTCATATTTAGGCTT+AGG | - | chr6.1:4335000-4335019 | MS.gene68003:intron | 40.0% | |
| TGAAATCTCAATTGTCGCAC+AGG | + | chr6.1:4334790-4334809 | None:intergenic | 40.0% | |
| TGTTCATAGTCAACAAGCTG+AGG | - | chr6.1:4334901-4334920 | MS.gene68003:CDS | 40.0% | |
| TTACAGATCAGCCACCTAAA+AGG | + | chr6.1:4334866-4334885 | None:intergenic | 40.0% | |
| ! | ACCGTGTGTCTTATTAACGA+AGG | + | chr6.1:4335429-4335448 | None:intergenic | 40.0% |
| ! | ATATTTTTCCGTGTCTCCAC+CGG | - | chr6.1:4335966-4335985 | MS.gene68003:intron | 40.0% |
| ! | CTCATTTACTCCGTGCATTT+TGG | - | chr6.1:4335227-4335246 | MS.gene68003:intron | 40.0% |
| ! | GGATGTGTTAGGATGAGTTT+TGG | - | chr6.1:4336093-4336112 | MS.gene68003:CDS | 40.0% |
| AGGCTCCTTGTGATCAGTAA+TGG | + | chr6.1:4334722-4334741 | None:intergenic | 45.0% | |
| CAGGTATTCGCCAAAATGCA+CGG | + | chr6.1:4335240-4335259 | None:intergenic | 45.0% | |
| CATCTCTTCACAAGCTGCAA+AGG | + | chr6.1:4334686-4334705 | None:intergenic | 45.0% | |
| CGTTCTGCTGAAGACTGTAA+CGG | + | chr6.1:4334663-4334682 | None:intergenic | 45.0% | |
| GAACACGATTGCGAGAATCT+TGG | - | chr6.1:4335168-4335187 | MS.gene68003:intron | 45.0% | |
| GGAGACACGGAAAAATATGG+AGG | + | chr6.1:4335964-4335983 | None:intergenic | 45.0% | |
| GGTGGAGACACGGAAAAATA+TGG | + | chr6.1:4335967-4335986 | None:intergenic | 45.0% | |
| TCCTAACACATCCACCTTTG+CGG | + | chr6.1:4336086-4336105 | None:intergenic | 45.0% | |
| TTCCTTCAACAGGAGAGTCA+CGG | - | chr6.1:4335907-4335926 | MS.gene68003:CDS | 45.0% | |
| TTGCGAGAATCTTGGATGAG+TGG | - | chr6.1:4335176-4335195 | MS.gene68003:intron | 45.0% | |
| TTGCGAGATTCTTGGATGAG+TGG | - | chr6.1:4335289-4335308 | MS.gene68003:intron | 45.0% | |
| ! | GGGTTCTGATTCAAAAGCTG+CGG | - | chr6.1:4334922-4334941 | MS.gene68003:intron | 45.0% |
| !! | TGTTCTGGATGCCTTTTAGG+TGG | - | chr6.1:4334852-4334871 | MS.gene68003:CDS | 45.0% |
| !!! | TGGGGAATACCTTTTTTGCC+TGG | - | chr6.1:4335367-4335386 | MS.gene68003:intron | 45.0% |
| AAATCGAGCATCCTGGACCA+AGG | + | chr6.1:4336007-4336026 | None:intergenic | 50.0% | |
| AAGGGTTCGATTGCCTCAAC+AGG | - | chr6.1:4336142-4336161 | MS.gene68003:CDS | 50.0% | |
| AATCGAGCATCCTGGACCAA+GGG | + | chr6.1:4336006-4336025 | None:intergenic | 50.0% | |
| AATTCTGCATCCCGCAAAGG+TGG | - | chr6.1:4336072-4336091 | MS.gene68003:CDS | 50.0% | |
| AATTCTGGCGATCCCTGTTG+AGG | + | chr6.1:4336158-4336177 | None:intergenic | 50.0% | |
| AGGGTTCGATTGCCTCAACA+GGG | - | chr6.1:4336143-4336162 | MS.gene68003:CDS | 50.0% | |
| ATGCACTTTCCGCGCATTCT+GGG | - | chr6.1:4335348-4335367 | MS.gene68003:intron | 50.0% | |
| CCAAATTCTGCATCCCGCAA+AGG | - | chr6.1:4336069-4336088 | MS.gene68003:CDS | 50.0% | |
| CCTAACACATCCACCTTTGC+GGG | + | chr6.1:4336085-4336104 | None:intergenic | 50.0% | |
| CCTTTGCGGGATGCAGAATT+TGG | + | chr6.1:4336072-4336091 | None:intergenic | 50.0% | |
| CGGGATGCAGAATTTGGAGA+TGG | + | chr6.1:4336066-4336085 | None:intergenic | 50.0% | |
| CGTGGCTTAGGACAAATGAG+AGG | + | chr6.1:4334742-4334761 | None:intergenic | 50.0% | |
| CGTTTCCAAATCGAGCATCC+TGG | + | chr6.1:4336014-4336033 | None:intergenic | 50.0% | |
| GCAGCTTGTGAAGAGATGAG+AGG | - | chr6.1:4334688-4334707 | MS.gene68003:CDS | 50.0% | |
| TATGCACTTTCCGCGCATTC+TGG | - | chr6.1:4335347-4335366 | MS.gene68003:intron | 50.0% | |
| TCCTTCAACAGGAGAGTCAC+GGG | - | chr6.1:4335908-4335927 | MS.gene68003:CDS | 50.0% | |
| TTGGAGATGGCAAGCCTGAT+GGG | + | chr6.1:4336053-4336072 | None:intergenic | 50.0% | |
| TTGGTCCAGGATGCTCGATT+TGG | - | chr6.1:4336006-4336025 | MS.gene68003:intron | 50.0% | |
| TTTGGAGATGGCAAGCCTGA+TGG | + | chr6.1:4336054-4336073 | None:intergenic | 50.0% | |
| ! | AAGGTATTCCCCAGAATGCG+CGG | + | chr6.1:4335360-4335379 | None:intergenic | 50.0% |
| AGCATCCTGGACCAAGGGAT+TGG | + | chr6.1:4336001-4336020 | None:intergenic | 55.0% | |
| CAGCAGGGACGCTTGAATTC+TGG | + | chr6.1:4336173-4336192 | None:intergenic | 55.0% | |
| CCCGCAAAGGTGGATGTGTT+AGG | - | chr6.1:4336082-4336101 | MS.gene68003:CDS | 55.0% | |
| CCTTCAACAGGAGAGTCACG+GGG | - | chr6.1:4335909-4335928 | MS.gene68003:CDS | 55.0% | |
| CCTTCTACTCTAACGGCAGC+CGG | + | chr6.1:4336126-4336145 | None:intergenic | 55.0% | |
| CGGCTGCCGTTAGAGTAGAA+GGG | - | chr6.1:4336124-4336143 | MS.gene68003:CDS | 55.0% | |
| TGCACTTTCCGCGCATTCTG+GGG | - | chr6.1:4335349-4335368 | MS.gene68003:intron | 55.0% | |
| TGGAGATGGCAAGCCTGATG+GGG | + | chr6.1:4336052-4336071 | None:intergenic | 55.0% | |
| TGTCCTAAGCCACGACGAGT+CGG | - | chr6.1:4334748-4334767 | MS.gene68003:CDS | 55.0% | |
| CCCCGTGACTCTCCTGTTGA+AGG | + | chr6.1:4335912-4335931 | None:intergenic | 60.0% | |
| CCGGCTGCCGTTAGAGTAGA+AGG | - | chr6.1:4336123-4336142 | MS.gene68003:CDS | 60.0% | |
| GTCCTAAGCCACGACGAGTC+GGG | - | chr6.1:4334749-4334768 | MS.gene68003:CDS | 60.0% | |
| TCCTAAGCCACGACGAGTCG+GGG | - | chr6.1:4334750-4334769 | MS.gene68003:CDS | 60.0% | |
| TTCCGTGTCTCCACCGGTCA+GGG | - | chr6.1:4335972-4335991 | MS.gene68003:intron | 60.0% | |
| TTTCCGTGTCTCCACCGGTC+AGG | - | chr6.1:4335971-4335990 | MS.gene68003:intron | 60.0% | |
| ! | AAGGGATTGGCAGCCCTGAC+CGG | + | chr6.1:4335988-4336007 | None:intergenic | 60.0% |
| AGCCCTGACCGGTGGAGACA+CGG | + | chr6.1:4335977-4335996 | None:intergenic | 65.0% | |
| GGCTGCCAATCCCTTGGTCC+AGG | - | chr6.1:4335993-4336012 | MS.gene68003:intron | 65.0% | |
| GGTCAGGGCTGCCAATCCCT+TGG | - | chr6.1:4335987-4336006 | MS.gene68003:intron | 65.0% | |
| ! | ACCCCGACTCGTCGTGGCTT+AGG | + | chr6.1:4334754-4334773 | None:intergenic | 65.0% |
| ! | GACAAGACCCCGACTCGTCG+TGG | + | chr6.1:4334760-4334779 | None:intergenic | 65.0% |
| ! | GGATTGGCAGCCCTGACCGG+TGG | + | chr6.1:4335985-4336004 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 4334655 | 4336200 | 4334655 | ID=MS.gene68003 |
| chr6.1 | mRNA | 4334655 | 4336200 | 4334655 | ID=MS.gene68003.t1;Parent=MS.gene68003 |
| chr6.1 | exon | 4336040 | 4336200 | 4336040 | ID=MS.gene68003.t1.exon1;Parent=MS.gene68003.t1 |
| chr6.1 | CDS | 4336040 | 4336200 | 4336040 | ID=cds.MS.gene68003.t1;Parent=MS.gene68003.t1 |
| chr6.1 | exon | 4335882 | 4335945 | 4335882 | ID=MS.gene68003.t1.exon2;Parent=MS.gene68003.t1 |
| chr6.1 | CDS | 4335882 | 4335945 | 4335882 | ID=cds.MS.gene68003.t1;Parent=MS.gene68003.t1 |
| chr6.1 | exon | 4334655 | 4334936 | 4334655 | ID=MS.gene68003.t1.exon3;Parent=MS.gene68003.t1 |
| chr6.1 | CDS | 4334655 | 4334936 | 4334655 | ID=cds.MS.gene68003.t1;Parent=MS.gene68003.t1 |
| Gene Sequence |
| Protein sequence |
