AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68039.t1 MTR_3g048950 95.531 537 21 1 1 534 1 537 0.0 1018
MS.gene68039.t1 MTR_2g010180 33.937 442 253 10 87 519 179 590 1.03e-48 178
MS.gene68039.t1 MTR_2g010180 33.864 440 252 10 87 517 193 602 1.61e-48 177
MS.gene68039.t1 MTR_2g010180 33.864 440 252 10 87 517 179 588 2.05e-48 177
MS.gene68039.t1 MTR_3g096980 30.388 464 267 12 75 523 174 596 2.40e-45 169
MS.gene68039.t1 MTR_8g094740 30.416 457 263 12 82 523 181 597 3.37e-41 157
MS.gene68039.t1 MTR_8g080890 32.982 285 182 5 43 321 45 326 6.30e-35 137
MS.gene68039.t1 MTR_8g094740 30.357 392 232 9 82 469 181 535 1.86e-33 134
MS.gene68039.t1 MTR_8g080870 26.459 514 283 16 43 517 15 472 2.69e-33 132
MS.gene68039.t1 MTR_4g074030 26.476 525 291 15 34 517 29 499 4.25e-33 132
MS.gene68039.t1 MTR_8g080840 28.686 373 231 7 5 361 22 375 2.01e-32 130
MS.gene68039.t1 MTR_8g097220 29.904 311 203 6 17 321 21 322 1.36e-31 128
MS.gene68039.t1 MTR_8g080880 32.168 286 183 5 43 321 44 325 5.58e-31 126
MS.gene68039.t1 MTR_8g095600 31.429 245 152 4 40 279 163 396 1.60e-29 122
MS.gene68039.t1 MTR_8g095600 31.429 245 152 4 40 279 163 396 4.19e-29 122
MS.gene68039.t1 MTR_8g095600 31.429 245 152 4 40 279 179 412 5.10e-29 121
MS.gene68039.t1 MTR_8g095600 31.429 245 152 4 40 279 163 396 5.56e-29 121
MS.gene68039.t1 MTR_1g082750 46.429 112 60 0 138 249 63 174 1.43e-22 100
MS.gene68039.t1 MTR_4g094205 46.602 103 55 0 148 250 119 221 1.11e-19 92.8
MS.gene68039.t1 MTR_8g107280 39.640 111 67 0 140 250 101 211 2.26e-11 66.6
MS.gene68039.t1 MTR_8g107280 39.640 111 67 0 140 250 101 211 2.81e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68039.t1 AT3G25660 73.184 537 134 4 3 531 1 535 0.0 764
MS.gene68039.t1 AT5G64440 29.158 487 295 12 45 517 139 589 8.39e-47 172
MS.gene68039.t1 AT4G34880 27.711 498 298 15 40 517 45 500 2.28e-28 119
MS.gene68039.t1 AT5G07360 30.451 266 170 4 15 275 181 436 2.30e-28 120
MS.gene68039.t1 AT5G07360 30.451 266 170 4 15 275 181 436 2.30e-28 120
MS.gene68039.t1 AT5G07360 30.451 266 163 5 15 275 181 429 7.34e-27 115
MS.gene68039.t1 AT1G08980 45.299 117 64 0 138 254 64 180 5.02e-22 99.0
MS.gene68039.t1 AT5G09420 34.682 173 107 3 138 310 107 273 8.27e-19 90.5
MS.gene68039.t1 AT4G34880 23.780 492 279 15 40 517 45 454 1.69e-18 88.6
MS.gene68039.t1 AT3G17970 40.909 110 65 0 141 250 97 206 5.32e-16 81.3
MS.gene68039.t1 AT3G17970 41.905 105 61 0 146 250 102 206 6.39e-16 81.3

Find 189 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATAAGGAATAGCTTTA+AGG 0.196302 5.3:+12495455 MS.gene68039:CDS
CCTTCAGCTGCTTATAAAAT+TGG 0.204129 5.3:+12495519 MS.gene68039:CDS
CACTGAAGCTTCTGCTTATC+AGG 0.236597 5.3:+12492250 MS.gene68039:CDS
CTTGATGCCATTGGCTGCTT+TGG 0.241283 5.3:+12494053 MS.gene68039:CDS
GGAGGTGCGGTGGCAGGTGG+GGG 0.254055 5.3:-12491843 None:intergenic
GGTTCATCGGTTGCTGATGC+TGG 0.274044 5.3:+12494074 MS.gene68039:CDS
CCAACCCGTGGGATGTTTCC+AGG 0.279284 5.3:+12493850 MS.gene68039:CDS
CTTAAAGCTATTCCTTATAA+TGG 0.283232 5.3:-12495454 None:intergenic
GAGGGAGGTGCGGTGGCAGG+TGG 0.318193 5.3:-12491846 None:intergenic
CCCTTGAAAGGTCTGAGAAT+TGG 0.320152 5.3:+12494418 MS.gene68039:CDS
TGTTGTTGGGAAGACGAATA+TGG 0.330954 5.3:+12492205 MS.gene68039:CDS
CCTGTTGGCCTGCAAATGAT+TGG 0.334314 5.3:+12496481 MS.gene68039:CDS
GGGAGGTGCGGTGGCAGGTG+GGG 0.334557 5.3:-12491844 None:intergenic
TATGGACGTGTCTCAAGATT+TGG 0.338893 5.3:+12494008 MS.gene68039:CDS
ATCTCTGCCGGCAAGGAAAT+TGG 0.341594 5.3:+12492038 MS.gene68039:CDS
TGTCTCGCTATGATGGTATT+AGG 0.343270 5.3:+12494747 MS.gene68039:CDS
TGGTGTTCTTGTTGCTGTTA+AGG 0.344765 5.3:+12492070 MS.gene68039:CDS
AAGGAAATTGGTCCTCTTGC+TGG 0.356463 5.3:+12492050 MS.gene68039:CDS
CCATGTGGATTTATTGAGAA+TGG 0.359058 5.3:+12496445 MS.gene68039:CDS
CGGCAGAGATTCTGCGGTCT+AGG 0.368547 5.3:-12492025 None:intergenic
TGTCTCAAGATTTGGACTTA+TGG 0.369848 5.3:+12494016 MS.gene68039:CDS
GATTCCCGAGCCAAAGGGTT+AGG 0.376718 5.3:+12494957 MS.gene68039:CDS
ATTGGTCGGAAGGGAGGTGG+AGG 0.381354 5.3:-12491980 None:intergenic
AGGGAGGTGCGGTGGCAGGT+GGG 0.381564 5.3:-12491845 None:intergenic
AAAGAGTGGAACGTGGAGTT+TGG 0.381955 5.3:-12491776 None:intergenic
ACCAATTCTCAGACCTTTCA+AGG 0.382570 5.3:-12494419 None:intergenic
CGGAGAGGGAGTTGGTGAGA+AGG 0.384523 5.3:-12491893 None:intergenic
AAGAGGACCAATTTCCTTGC+CGG 0.385027 5.3:-12492045 None:intergenic
CGAGGATACTTGAGGGTTAT+CGG 0.386311 5.3:+12492132 MS.gene68039:CDS
GGTGGAGGAAGGAACGGAGG+TGG 0.388259 5.3:-12491965 None:intergenic
ATGCTGCACCAATCATTTGC+AGG 0.388800 5.3:-12496489 None:intergenic
AAGACGAATATGGATGAGTT+TGG 0.396095 5.3:+12492215 MS.gene68039:CDS
CGGTGAGACGGAGGCGGGTG+AGG 0.400218 5.3:-12491938 None:intergenic
GGGATTGGTCGGAAGGGAGG+TGG 0.402642 5.3:-12491983 None:intergenic
CATTGGCTGCTTTGGTTCAT+CGG 0.403088 5.3:+12494061 MS.gene68039:CDS
GAGTTGGGTGGGATTGTTGT+TGG 0.403136 5.3:+12492191 MS.gene68039:CDS
AACAGGTGAGAACCATTATA+AGG 0.404504 5.3:+12495442 MS.gene68039:intron
ATACTTCTCCATGCAATTGC+TGG 0.405414 5.3:+12494098 MS.gene68039:CDS
GGAGAGGGAGTTGGTGAGAA+GGG 0.408597 5.3:-12491892 None:intergenic
GGAGGCGGGTGAGGTGGGAT+TGG 0.414605 5.3:-12491929 None:intergenic
GAAGGAACGGAGGTGGGGTT+CGG 0.415482 5.3:-12491958 None:intergenic
TGAGAGGGAGGTGCGGTGGC+AGG 0.415744 5.3:-12491849 None:intergenic
GGGGTTCGGTGAGACGGAGG+CGG 0.420001 5.3:-12491944 None:intergenic
AACTGCAGCTGCCGATCCTC+CGG 0.421581 5.3:-12493889 None:intergenic
AGTTGGGTGGGATTGTTGTT+GGG 0.424283 5.3:+12492192 MS.gene68039:CDS
CCAATCATTTGCAGGCCAAC+AGG 0.424765 5.3:-12496481 None:intergenic
CACCATCTTCAATAGTTTCA+CGG 0.431389 5.3:-12494447 None:intergenic
GTGGAGGAAGGAACGGAGGT+GGG 0.435354 5.3:-12491964 None:intergenic
GAGGTGCGGTGGCAGGTGGG+GGG 0.437698 5.3:-12491842 None:intergenic
TGGGATGTTTCCAGGGTGCC+AGG 0.440289 5.3:+12493858 MS.gene68039:CDS
GATCCTCCGGATGATCCTCC+TGG 0.440465 5.3:-12493876 None:intergenic
TACAGATTTGTTCCACCAAT+CGG 0.443443 5.3:+12497445 MS.gene68039:CDS
CTAGCTCATCAGCATAAACT+TGG 0.445051 5.3:-12494920 None:intergenic
CAGGTTAATGTCAACCTAGC+TGG 0.445133 5.3:+12496403 MS.gene68039:intron
GGAGGTGGAGGAAGGAACGG+AGG 0.445202 5.3:-12491968 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.451615 5.3:+12493990 MS.gene68039:CDS
GGGGTGTGTAAGAGTAGCTT+GGG 0.452977 5.3:-12491823 None:intergenic
GATGAGCTAGACTCTCTCTA+TGG 0.453282 5.3:+12494933 MS.gene68039:CDS
TTAAAATGAGATAGAAAGTT+GGG 0.454413 5.3:-12494370 None:intergenic
GAGCTGATAGCGTTGAATAA+CGG 0.457511 5.3:+12497467 MS.gene68039:CDS
TGAGACGGAGGCGGGTGAGG+TGG 0.460578 5.3:-12491935 None:intergenic
GGGACATATGCCCTTTCAGC+TGG 0.466577 5.3:+12495154 MS.gene68039:CDS
TACCTCAGAACCTAACCCTT+TGG 0.473794 5.3:-12494967 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 5.3:+12493930 MS.gene68039:CDS
TCCAACTTGTCTCGCTATGA+TGG 0.480589 5.3:+12494740 MS.gene68039:CDS
GATGAGGTCGGTGGCGGAGA+GGG 0.480626 5.3:-12491907 None:intergenic
GTGAAGAGAGTTAAGGAGTT+GGG 0.481622 5.3:+12492176 MS.gene68039:CDS
CAGGCAGTGCGTTGTATCGT+TGG 0.481874 5.3:+12493917 MS.gene68039:CDS
CGGCAGCTGCAGTTTCTGCC+AGG 0.482175 5.3:+12493898 MS.gene68039:CDS
TTCACCGCCGTCGCATCAAA+AGG 0.483739 5.3:-12492158 None:intergenic
GGGTTCGGTGAGACGGAGGC+GGG 0.484229 5.3:-12491943 None:intergenic
GAGTAGCTTGGGTGGATGAT+GGG 0.484757 5.3:-12491812 None:intergenic
GAGACGGAGGCGGGTGAGGT+GGG 0.484958 5.3:-12491934 None:intergenic
GTGTGTAAGAGTAGCTTGGG+TGG 0.486398 5.3:-12491820 None:intergenic
GTTAAAATGAGATAGAAAGT+TGG 0.486758 5.3:-12494371 None:intergenic
AGGCAGTGCGTTGTATCGTT+GGG 0.487647 5.3:+12493918 MS.gene68039:CDS
GTCGGTGGCGGAGAGGGAGT+TGG 0.490976 5.3:-12491901 None:intergenic
AGGGTGCCAGGAGGATCATC+CGG 0.492708 5.3:+12493870 MS.gene68039:CDS
GAATAGCTTTAAGGAAGCAC+TGG 0.494423 5.3:+12495464 MS.gene68039:CDS
GAATATGGATGAGTTTGGTA+TGG 0.494732 5.3:+12492220 MS.gene68039:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 5.3:+12494457 MS.gene68039:CDS
AGTTGGTGAGAAGGGAGTGA+CGG 0.496681 5.3:-12491884 None:intergenic
GGGTGAGGTGGGATTGGATG+AGG 0.497563 5.3:-12491923 None:intergenic
AGAGTAGCTTGGGTGGATGA+TGG 0.500080 5.3:-12491813 None:intergenic
CAACGATACAACGCACTGCC+TGG 0.500607 5.3:-12493916 None:intergenic
TGCTGGCAACCCAAGCGAAA+AGG 0.500977 5.3:-12494687 None:intergenic
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 5.3:-12495510 None:intergenic
GGATTGGATGAGGTCGGTGG+CGG 0.503997 5.3:-12491913 None:intergenic
GGAGGTGGGGTTCGGTGAGA+CGG 0.506358 5.3:-12491950 None:intergenic
GTGATACTGGTGGAAGTATG+AGG 0.508405 5.3:+12493943 MS.gene68039:CDS
AGAACCTAACCCTTTGGCTC+GGG 0.508452 5.3:-12494961 None:intergenic
GGTGGGGTTCGGTGAGACGG+AGG 0.508984 5.3:-12491947 None:intergenic
CCTAGCTGGACTACCTGCCT+TGG 0.511239 5.3:+12496417 MS.gene68039:CDS
GTGCTTGAGCGATGAGGGAT+TGG 0.513135 5.3:-12491998 None:intergenic
ACGCTATCAGCTCCGATTGG+TGG 0.515905 5.3:-12497457 None:intergenic
ATCATAGTAACCAGCTGAAA+GGG 0.518202 5.3:-12495164 None:intergenic
TAGCTTGGGTGGATGATGGG+AGG 0.520873 5.3:-12491809 None:intergenic
TGGTGAGAAGGGAGTGACGG+AGG 0.521192 5.3:-12491881 None:intergenic
GTTCATCGGTTGCTGATGCT+GGG 0.522970 5.3:+12494075 MS.gene68039:CDS
TGTTAAGGATAATATTTGTA+CGG 0.523699 5.3:+12492085 MS.gene68039:CDS
TGGAGGAAGGAACGGAGGTG+GGG 0.527467 5.3:-12491963 None:intergenic
ACGGAGGGTGAGAATTTGAG+AGG 0.528139 5.3:-12491865 None:intergenic
ACGGCTGACATGCCGTCCAC+TGG 0.529078 5.3:+12492104 MS.gene68039:CDS
AGGAGGATCATCCGGAGGAT+CGG 0.529125 5.3:+12493878 MS.gene68039:CDS
TTGGAAAGTAAGCCCTTGAA+AGG 0.529759 5.3:+12494406 MS.gene68039:CDS
TTTATTGAGAATGGACCGAC+AGG 0.531528 5.3:+12496454 MS.gene68039:CDS
ACCATCATAGCGAGACAAGT+TGG 0.538119 5.3:-12494741 None:intergenic
CATCATAGTAACCAGCTGAA+AGG 0.540452 5.3:-12495165 None:intergenic
ATGGAGATTCCCGAGCCAAA+GGG 0.540501 5.3:+12494952 MS.gene68039:CDS
CCAATTCTCAGACCTTTCAA+GGG 0.542138 5.3:-12494418 None:intergenic
GGTGAGAAGGGAGTGACGGA+GGG 0.542284 5.3:-12491880 None:intergenic
CAACCCGTGGGATGTTTCCA+GGG 0.543202 5.3:+12493851 MS.gene68039:CDS
TATCATGACCAGCAATTGCA+TGG 0.543365 5.3:-12494106 None:intergenic
CTTGAGACACGTCCATATGT+TGG 0.543787 5.3:-12494002 None:intergenic
AAGAGAGTTAAGGAGTTGGG+TGG 0.544145 5.3:+12492179 MS.gene68039:CDS
GTCATGTGCTTGAGCGATGA+GGG 0.545346 5.3:-12492003 None:intergenic
CAGAACCTAACCCTTTGGCT+CGG 0.546221 5.3:-12494962 None:intergenic
CGATGAGGGATTGGTCGGAA+GGG 0.546485 5.3:-12491989 None:intergenic
GATCCTTTGGCTATGTATGC+TGG 0.549623 5.3:+12495640 MS.gene68039:CDS
AATATGGATGAGTTTGGTAT+GGG 0.549939 5.3:+12492221 MS.gene68039:CDS
GCTGACATGCCGTCCACTGG+TGG 0.550639 5.3:+12492107 MS.gene68039:CDS
AAGGGAGGTGGAGGAAGGAA+CGG 0.550801 5.3:-12491971 None:intergenic
AGAGAGTTAAGGAGTTGGGT+GGG 0.551590 5.3:+12492180 MS.gene68039:CDS
ATCCGTGAAACTATTGAAGA+TGG 0.552239 5.3:+12494445 MS.gene68039:CDS
AGCTTGGGTGGATGATGGGA+GGG 0.554935 5.3:-12491808 None:intergenic
CCACATGGTAAAACCAAGGC+AGG 0.555507 5.3:-12496430 None:intergenic
CCTTGCCGGCAGAGATTCTG+CGG 0.555936 5.3:-12492031 None:intergenic
AACTCATACTTGCTTACTTG+AGG 0.556320 5.3:-12494141 None:intergenic
GTCGGAAGGGAGGTGGAGGA+AGG 0.557260 5.3:-12491976 None:intergenic
GGTGGATCGAGGATACTTGA+GGG 0.557902 5.3:+12492125 MS.gene68039:CDS
GAGAATTTGAGAGGGAGGTG+CGG 0.558307 5.3:-12491856 None:intergenic
TATGGAGATTCCCGAGCCAA+AGG 0.558471 5.3:+12494951 MS.gene68039:CDS
GCAGGGAGAGCTGCTGAGAG+TGG 0.563133 5.3:+12497393 MS.gene68039:intron
GCGATGAGGGATTGGTCGGA+AGG 0.563493 5.3:-12491990 None:intergenic
GATTGGTGCAGCATTTAATG+AGG 0.564316 5.3:+12496498 MS.gene68039:CDS
ATATTACAAACGAGCACAGC+AGG 0.567788 5.3:+12495189 MS.gene68039:CDS
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 5.3:-12496417 None:intergenic
CGGAGGGTGAGAATTTGAGA+GGG 0.568560 5.3:-12491864 None:intergenic
TGGTGGAAGTATGAGGCAGC+CGG 0.571787 5.3:+12493950 MS.gene68039:CDS
AGCCAAAGGGTTAGGTTCTG+AGG 0.574572 5.3:+12494965 MS.gene68039:CDS
CAGGGAGAGCTGCTGAGAGT+GGG 0.575596 5.3:+12497394 MS.gene68039:intron
GACGGCGGTGAAGAGAGTTA+AGG 0.579689 5.3:+12492169 MS.gene68039:CDS
GGACCGACAGGGCTTCCTGT+TGG 0.581994 5.3:+12496466 MS.gene68039:CDS
TGAGGGATTGGTCGGAAGGG+AGG 0.584231 5.3:-12491986 None:intergenic
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 5.3:-12495508 None:intergenic
GGATGATCCTCCTGGCACCC+TGG 0.587626 5.3:-12493868 None:intergenic
GAGGTGGGATTGGATGAGGT+CGG 0.587835 5.3:-12491919 None:intergenic
CTGATAAGCAGAAGCTTCAG+TGG 0.588296 5.3:-12492249 None:intergenic
GGTGAAGAGAGTTAAGGAGT+TGG 0.591063 5.3:+12492175 MS.gene68039:CDS
TCAACGCTATCAGCTCCGAT+TGG 0.591245 5.3:-12497460 None:intergenic
CGATGAACCAAAGCAGCCAA+TGG 0.591677 5.3:-12494060 None:intergenic
GGCACCCTGGAAACATCCCA+CGG 0.592300 5.3:-12493855 None:intergenic
GAGGGAGAAGCGTGAAAGAG+TGG 0.593307 5.3:-12491790 None:intergenic
TCATACTTGCTTACTTGAGG+TGG 0.595066 5.3:-12494138 None:intergenic
GCGTCATCACTTGATGCCAT+TGG 0.595721 5.3:+12494044 MS.gene68039:CDS
GTGGGATTGGATGAGGTCGG+TGG 0.596179 5.3:-12491916 None:intergenic
AATAGGTGACTGCCAACCCG+TGG 0.597933 5.3:+12493838 MS.gene68039:intron
CCTGGAAACATCCCACGGGT+TGG 0.599862 5.3:-12493850 None:intergenic
CCGCAGAATCTCTGCCGGCA+AGG 0.602381 5.3:+12492031 MS.gene68039:CDS
GGAACGTGGAGTTTGGAGTG+TGG 0.608311 5.3:-12491769 None:intergenic
GGATGAGGTCGGTGGCGGAG+AGG 0.610120 5.3:-12491908 None:intergenic
TGGTGGATCGAGGATACTTG+AGG 0.610399 5.3:+12492124 MS.gene68039:CDS
GCAACAAGAACACCAGCAAG+AGG 0.610406 5.3:-12492062 None:intergenic
AAAGCGAGGACATAGTATGC+TGG 0.610724 5.3:-12494704 None:intergenic
AGGCCAACAGGAAGCCCTGT+CGG 0.612914 5.3:-12496469 None:intergenic
GCACCCTGGAAACATCCCAC+GGG 0.614008 5.3:-12493854 None:intergenic
TTGAGCGATGAGGGATTGGT+CGG 0.615615 5.3:-12491994 None:intergenic
GGCAACCCAAGCGAAAAGGA+TGG 0.619210 5.3:-12494683 None:intergenic
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 5.3:-12495509 None:intergenic
TGCCGTCCACTGGTGGATCG+AGG 0.620221 5.3:+12492114 MS.gene68039:CDS
ATCCTCGATCCACCAGTGGA+CGG 0.622376 5.3:-12492116 None:intergenic
CTAGACCGCAGAATCTCTGC+CGG 0.625438 5.3:+12492026 MS.gene68039:CDS
GGTCATGTGCTTGAGCGATG+AGG 0.632305 5.3:-12492004 None:intergenic
ATATGGATGAGTTTGGTATG+GGG 0.639425 5.3:+12492222 MS.gene68039:CDS
AATTTGAGAGGGAGGTGCGG+TGG 0.644753 5.3:-12491853 None:intergenic
ACCGCCGTCGCATCAAAAGG+AGG 0.647265 5.3:-12492155 None:intergenic
ATTAGGATGCTCTGTGAACG+AGG 0.648039 5.3:+12494522 MS.gene68039:CDS
AGGGTGAGAATTTGAGAGGG+AGG 0.648068 5.3:-12491861 None:intergenic
CCATTCTCAATAAATCCACA+TGG 0.649598 5.3:-12496445 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 5.3:-12495643 None:intergenic
AAGTATCCTCGATCCACCAG+TGG 0.660887 5.3:-12492120 None:intergenic
ATAGGTGACTGCCAACCCGT+GGG 0.663939 5.3:+12493839 MS.gene68039:intron
TTATTGAGAATGGACCGACA+GGG 0.664505 5.3:+12496455 MS.gene68039:CDS
AAGATGATTCAGACAAAGCG+AGG 0.664996 5.3:-12494718 None:intergenic
AAGCGTGAAAGAGTGGAACG+TGG 0.670786 5.3:-12491783 None:intergenic
GATGTTTCCAGGGTGCCAGG+AGG 0.670862 5.3:+12493861 MS.gene68039:CDS
AAATCCACATGGTAAAACCA+AGG 0.672604 5.3:-12496434 None:intergenic
GTGCCAGGAGGATCATCCGG+AGG 0.694596 5.3:+12493873 MS.gene68039:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 5.3:+12493933 MS.gene68039:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAACAACATAAATAT+AGG + chr5.3:12496143-12496162 MS.gene68039:intron 10.0%
!!! TGATTAATTAAGATATTTTT+TGG - chr5.3:12495915-12495934 None:intergenic 10.0%
!!! TTCTATTTTTATTTTTTTCA+AGG - chr5.3:12497346-12497365 None:intergenic 10.0%
!! AAATACAATACATACAAAAT+TGG - chr5.3:12495081-12495100 None:intergenic 15.0%
!! AATTGATTATCTATTATCTA+AGG - chr5.3:12495885-12495904 None:intergenic 15.0%
!! ATAATAGTATATTGGATTTA+TGG - chr5.3:12493111-12493130 None:intergenic 15.0%
!! ATAGTAAATGGTTAAATAAA+GGG + chr5.3:12492613-12492632 MS.gene68039:intron 15.0%
!! CATATATGTATTTATTGTAT+AGG - chr5.3:12496223-12496242 None:intergenic 15.0%
!! GAAAAAAAAAAAAGATGAAA+TGG - chr5.3:12492736-12492755 None:intergenic 15.0%
!! TACTAACTTAGAAATATAAA+AGG + chr5.3:12493078-12493097 MS.gene68039:intron 15.0%
!! TATCCAAAAACTAAAATATA+AGG - chr5.3:12492903-12492922 None:intergenic 15.0%
!!! AAAGTTTAAAAATTGTTGTT+CGG + chr5.3:12496732-12496751 MS.gene68039:intron 15.0%
!!! ACAATTTTTAAACTTTTCTT+TGG - chr5.3:12496728-12496747 None:intergenic 15.0%
!!! ACTTTATTTTATGTATTTCT+TGG + chr5.3:12495214-12495233 MS.gene68039:intron 15.0%
!!! ATTTTAACCTAAAATAATGT+GGG + chr5.3:12497241-12497260 MS.gene68039:intron 15.0%
!!! CATTAATAAATCATTTTGTT+TGG + chr5.3:12494862-12494881 MS.gene68039:intron 15.0%
!!! TATTTTAACCTAAAATAATG+TGG + chr5.3:12497240-12497259 MS.gene68039:intron 15.0%
!!! TTATTTTTTTCAAGGAAAAA+AGG - chr5.3:12497338-12497357 None:intergenic 15.0%
!!! TTCATTTATTTTAGAAGTTT+GGG + chr5.3:12495388-12495407 MS.gene68039:intron 15.0%
!!! TTGAAAGTTTTAATACATTT+AGG + chr5.3:12492642-12492661 MS.gene68039:intron 15.0%
!! AAACTTATTCCAGTTATAAA+TGG - chr5.3:12493792-12493811 None:intergenic 20.0%
!! AAATGAAAAGGGTTAAATAA+CGG - chr5.3:12494638-12494657 None:intergenic 20.0%
!! AACTTATTCCAGTTATAAAT+GGG - chr5.3:12493791-12493810 None:intergenic 20.0%
!! AAGTATTTCATTCTTCTTAT+CGG + chr5.3:12495678-12495697 MS.gene68039:intron 20.0%
!! ACAGAATAAAATATTGTGTT+CGG - chr5.3:12494830-12494849 None:intergenic 20.0%
!! GATAGTAAATGGTTAAATAA+AGG + chr5.3:12492612-12492631 MS.gene68039:intron 20.0%
!! GATGTATTCAATGTTAATAA+TGG + chr5.3:12492939-12492958 MS.gene68039:intron 20.0%
!! GATGTTAGATAATAGTATAT+TGG - chr5.3:12493119-12493138 None:intergenic 20.0%
!! TAACATCTAGTATTCAATAT+GGG + chr5.3:12493132-12493151 MS.gene68039:intron 20.0%
!! TAATGGAGATATCAAAATAA+GGG + chr5.3:12492956-12492975 MS.gene68039:intron 20.0%
!! TACTAATATTACAAACAACA+GGG - chr5.3:12493316-12493335 None:intergenic 20.0%
!! TATTAGTAATGAATATGAGA+AGG + chr5.3:12493328-12493347 MS.gene68039:intron 20.0%
!! TGTTAAGGATAATATTTGTA+CGG + chr5.3:12492085-12492104 MS.gene68039:CDS 20.0%
!! TGTTGAATTATAGAAAATAG+AGG + chr5.3:12496058-12496077 MS.gene68039:intron 20.0%
!! TTAAAATGAGATAGAAAGTT+GGG - chr5.3:12494373-12494392 None:intergenic 20.0%
!! TTAATTAATCAATAAGTGCA+GGG + chr5.3:12495924-12495943 MS.gene68039:intron 20.0%
!! TTACTAATATTACAAACAAC+AGG - chr5.3:12493317-12493336 None:intergenic 20.0%
!! TTTAGAAATCTTACAACATT+TGG - chr5.3:12494183-12494202 None:intergenic 20.0%
!!! AAAAATAGAATCATCCTTTT+TGG + chr5.3:12497356-12497375 MS.gene68039:intron 20.0%
!!! AATCAATAATGTAATTTGTC+AGG + chr5.3:12494342-12494361 MS.gene68039:intron 20.0%
!!! ATAATGGAGATATCAAAATA+AGG + chr5.3:12492955-12492974 MS.gene68039:intron 20.0%
!!! GCATTTTTTATTAGTCATTT+TGG + chr5.3:12492413-12492432 MS.gene68039:intron 20.0%
!!! GTTCATTTATTTTAGAAGTT+TGG + chr5.3:12495387-12495406 MS.gene68039:intron 20.0%
!!! TATTTTATGTATTTCTTGGT+GGG + chr5.3:12495218-12495237 MS.gene68039:intron 20.0%
!!! TGACCTTATATTTTAGTTTT+TGG + chr5.3:12492897-12492916 MS.gene68039:intron 20.0%
!!! TGTTTGTTGTTTTTTATATC+CGG + chr5.3:12492777-12492796 MS.gene68039:intron 20.0%
!!! TTATTTTATGTATTTCTTGG+TGG + chr5.3:12495217-12495236 MS.gene68039:intron 20.0%
!!! TTCTCTTTTTAATACATTTC+AGG + chr5.3:12495111-12495130 MS.gene68039:intron 20.0%
!!! TTTACATTTTGCTTTAGATT+GGG + chr5.3:12496995-12497014 MS.gene68039:intron 20.0%
! AAAGATACAATTACTATTGC+AGG - chr5.3:12495589-12495608 None:intergenic 25.0%
! AAATAAATTCCAAGCCAAAA+AGG - chr5.3:12497373-12497392 None:intergenic 25.0%
! AGTCAAATTTATATAGGCTA+AGG + chr5.3:12496118-12496137 MS.gene68039:intron 25.0%
! ATAGTCTTTGTTCAATATGA+TGG + chr5.3:12494240-12494259 MS.gene68039:intron 25.0%
! ATCCTTCTCAATTTCAAATT+TGG + chr5.3:12495001-12495020 MS.gene68039:intron 25.0%
! CAATAATGTTCATATCACAA+TGG + chr5.3:12493001-12493020 MS.gene68039:intron 25.0%
! CTAACATCTAGTATTCAATA+TGG + chr5.3:12493131-12493150 MS.gene68039:intron 25.0%
! CTTAAAGCTATTCCTTATAA+TGG - chr5.3:12495457-12495476 None:intergenic 25.0%
! CTTAATTAATCAATAAGTGC+AGG + chr5.3:12495923-12495942 MS.gene68039:intron 25.0%
! GTATATTGGATTTATGGTAT+CGG - chr5.3:12493105-12493124 None:intergenic 25.0%
! GTTAAAATGAGATAGAAAGT+TGG - chr5.3:12494374-12494393 None:intergenic 25.0%
! GTTCATTGTTGAAAAGAAAT+TGG - chr5.3:12494322-12494341 None:intergenic 25.0%
! TAAATTCTCGTTATTAGCAA+TGG + chr5.3:12494199-12494218 MS.gene68039:intron 25.0%
! TAATCTCTCTCTAAATCTAA+TGG - chr5.3:12493579-12493598 None:intergenic 25.0%
! TACAGGTATATGCATATATA+AGG - chr5.3:12495045-12495064 None:intergenic 25.0%
! TATATTGGATTTATGGTATC+GGG - chr5.3:12493104-12493123 None:intergenic 25.0%
! TCATTTGTCCATTAACTTAA+AGG + chr5.3:12494652-12494671 MS.gene68039:intron 25.0%
! TGAAAAGAAAAATGATCCTT+TGG + chr5.3:12495627-12495646 MS.gene68039:CDS 25.0%
! TTGCAATTTCAATACATTCA+TGG - chr5.3:12492379-12492398 None:intergenic 25.0%
!! AAGTTAATGGACAAATGAAA+AGG - chr5.3:12494650-12494669 None:intergenic 25.0%
!! ACGTCTATTTTACATGATAA+GGG - chr5.3:12496816-12496835 None:intergenic 25.0%
!! AGTTAATGGACAAATGAAAA+GGG - chr5.3:12494649-12494668 None:intergenic 25.0%
!! ATAGAACAAAAAAGTACACT+TGG - chr5.3:12497066-12497085 None:intergenic 25.0%
!! CATTATAAGGAATAGCTTTA+AGG + chr5.3:12495455-12495474 MS.gene68039:CDS 25.0%
!! CTGTAGTTTTTCTATAAACA+TGG - chr5.3:12497100-12497119 None:intergenic 25.0%
!! TAATGCTTGCCTTTATTTAT+TGG + chr5.3:12496365-12496384 MS.gene68039:intron 25.0%
!! TTGGATCATTTCTTTTATAC+AGG - chr5.3:12495062-12495081 None:intergenic 25.0%
!!! ATAAATCATTTTGTTTGGCT+TGG + chr5.3:12494867-12494886 MS.gene68039:intron 25.0%
!!! CTTTACATTTTGCTTTAGAT+TGG + chr5.3:12496994-12497013 MS.gene68039:intron 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG + chr5.3:12495133-12495152 MS.gene68039:CDS 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG + chr5.3:12495134-12495153 MS.gene68039:CDS 25.0%
!!! TGTTTGTTTTGTTGATTTTG+AGG + chr5.3:12492808-12492827 MS.gene68039:intron 25.0%
AAAACATACTGAACTACATG+TGG + chr5.3:12497039-12497058 MS.gene68039:intron 30.0%
AAAATATTGTGTTCGGTTGT+GGG - chr5.3:12494823-12494842 None:intergenic 30.0%
AAATGATGACTTAATTCGCT+AGG - chr5.3:12496027-12496046 None:intergenic 30.0%
AATACAAGACATGCAAAAAG+TGG + chr5.3:12493683-12493702 MS.gene68039:intron 30.0%
AATATGGATGAGTTTGGTAT+GGG + chr5.3:12492221-12492240 MS.gene68039:CDS 30.0%
AATTTCATGTGTGATATTCC+AGG - chr5.3:12496701-12496720 None:intergenic 30.0%
ACCTTCTCTATATCTAGATA+CGG + chr5.3:12494894-12494913 MS.gene68039:intron 30.0%
ATACAAGACATGCAAAAAGT+GGG + chr5.3:12493684-12493703 MS.gene68039:intron 30.0%
ATGGTCAAAGTTAACTAACT+TGG + chr5.3:12497189-12497208 MS.gene68039:intron 30.0%
ATTGAATTAAGTTTGTGAGC+AGG + chr5.3:12493407-12493426 MS.gene68039:intron 30.0%
ATTTCATGTGTGATATTCCA+GGG - chr5.3:12496700-12496719 None:intergenic 30.0%
CAAAACAAACAAACAAACAC+CGG - chr5.3:12492799-12492818 None:intergenic 30.0%
CAAGATTGAAAGTTGTCAAA+TGG + chr5.3:12497170-12497189 MS.gene68039:intron 30.0%
CACAATGGTTATGGAAATAA+GGG + chr5.3:12493016-12493035 MS.gene68039:intron 30.0%
CAGCAGAGTCAAATTTATAT+AGG + chr5.3:12496112-12496131 MS.gene68039:intron 30.0%
CATTTGACAACTTTCAATCT+TGG - chr5.3:12497172-12497191 None:intergenic 30.0%
CTAACATGCAATAATGCAAA+AGG - chr5.3:12495564-12495583 None:intergenic 30.0%
CTCAAAGCTCTATAAACTTT+AGG - chr5.3:12495837-12495856 None:intergenic 30.0%
CTCACTTCAAATTATGACTA+AGG - chr5.3:12492300-12492319 None:intergenic 30.0%
CTTATCATGTAAAATAGACG+TGG + chr5.3:12496815-12496834 MS.gene68039:intron 30.0%
GAGAAACCACCAATAAATAA+AGG - chr5.3:12496377-12496396 None:intergenic 30.0%
GATGCATATGTTCATTCAAT+AGG + chr5.3:12493821-12493840 MS.gene68039:intron 30.0%
GATTTAGAGAGAGATTATAG+AGG + chr5.3:12493582-12493601 MS.gene68039:intron 30.0%
TAAAATATTGTGTTCGGTTG+TGG - chr5.3:12494824-12494843 None:intergenic 30.0%
TAGATTTAGAGAGATTGTAG+AGG + chr5.3:12493526-12493545 MS.gene68039:intron 30.0%
TATATACTCGACACATGTTA+AGG - chr5.3:12495969-12495988 None:intergenic 30.0%
TCACAATGGTTATGGAAATA+AGG + chr5.3:12493015-12493034 MS.gene68039:intron 30.0%
TGAAATTGAGAAGGATTAGA+AGG - chr5.3:12494997-12495016 None:intergenic 30.0%
TGACTGAATTCATGATCATT+GGG - chr5.3:12495271-12495290 None:intergenic 30.0%
TGTTCATATCACAATGGTTA+TGG + chr5.3:12493007-12493026 MS.gene68039:intron 30.0%
TTAGTCCCTAACATAATCTT+GGG - chr5.3:12492527-12492546 None:intergenic 30.0%
TTATGTGTGTTCTATGTAAC+AGG + chr5.3:12495425-12495444 MS.gene68039:intron 30.0%
TTTAGTCCCTAACATAATCT+TGG - chr5.3:12492528-12492547 None:intergenic 30.0%
TTTCCTTTATGAACTTACGT+AGG - chr5.3:12496932-12496951 None:intergenic 30.0%
! AAATTGGCTTCATAACAAGA+AGG - chr5.3:12494306-12494325 None:intergenic 30.0%
! AAATTTGGCTGCAAGATTTT+CGG + chr5.3:12495016-12495035 MS.gene68039:intron 30.0%
! AGACAATTAGTGTTAAGTTG+AGG + chr5.3:12495750-12495769 MS.gene68039:intron 30.0%
! AGCCAAATTTGAAATTGAGA+AGG - chr5.3:12495006-12495025 None:intergenic 30.0%
! ATACATGCCCACATTATTTT+AGG - chr5.3:12497251-12497270 None:intergenic 30.0%
! ATCAATCCTGGGAATAATTT+TGG - chr5.3:12496674-12496693 None:intergenic 30.0%
! CAATAATGTAATTTGTCAGG+AGG + chr5.3:12494345-12494364 MS.gene68039:intron 30.0%
! CACGTCTATTTTACATGATA+AGG - chr5.3:12496817-12496836 None:intergenic 30.0%
! GGTGAAAATGAGAATTTTGA+TGG + chr5.3:12495132-12495151 MS.gene68039:intron 30.0%
! TGTGTTTTTCTTTTCCAGTT+TGG + chr5.3:12492836-12492855 MS.gene68039:intron 30.0%
! TTAACTAACTTGGTCTTTCT+GGG + chr5.3:12497199-12497218 MS.gene68039:intron 30.0%
! TTTTTCTTTTCCAGTTTGGA+CGG + chr5.3:12492840-12492859 MS.gene68039:intron 30.0%
!! ATTTTGGTGACATCAAACAA+AGG - chr5.3:12496658-12496677 None:intergenic 30.0%
!! GCATGTTGATTTATAAACGT+GGG + chr5.3:12496841-12496860 MS.gene68039:intron 30.0%
!! TACCTTTCTAAAGAGCATTA+AGG + chr5.3:12496606-12496625 MS.gene68039:intron 30.0%
!! TTTCTAAAGAGCATTAAGGA+GGG + chr5.3:12496610-12496629 MS.gene68039:intron 30.0%
!! TTTTAACTCTGCAAGTTCTT+TGG + chr5.3:12494387-12494406 MS.gene68039:CDS 30.0%
!!! ATTTTTTATTGTTGTTCCCC+TGG + chr5.3:12496904-12496923 MS.gene68039:intron 30.0%
!!! GGACTCAGCTTAATATTTTT+TGG + chr5.3:12495293-12495312 MS.gene68039:intron 30.0%
AAATCCACATGGTAAAACCA+AGG - chr5.3:12496437-12496456 None:intergenic 35.0%
AACAGGTGAGAACCATTATA+AGG + chr5.3:12495442-12495461 MS.gene68039:intron 35.0%
AACTCATACTTGCTTACTTG+AGG - chr5.3:12494144-12494163 None:intergenic 35.0%
AAGACGAATATGGATGAGTT+TGG + chr5.3:12492215-12492234 MS.gene68039:CDS 35.0%
AGAGAGATTATAGAGGATCT+GGG + chr5.3:12493589-12493608 MS.gene68039:intron 35.0%
AGTTCTCCCAAGATTATGTT+AGG + chr5.3:12492518-12492537 MS.gene68039:intron 35.0%
ATAAAGGCAAGCATTATTCC+CGG - chr5.3:12496361-12496380 None:intergenic 35.0%
ATATGGATGAGTTTGGTATG+GGG + chr5.3:12492222-12492241 MS.gene68039:CDS 35.0%
ATCATAGTAACCAGCTGAAA+GGG - chr5.3:12495167-12495186 None:intergenic 35.0%
ATCCGTGAAACTATTGAAGA+TGG + chr5.3:12494445-12494464 MS.gene68039:CDS 35.0%
ATGATCATGAATTCAGTCAC+AGG + chr5.3:12495272-12495291 MS.gene68039:intron 35.0%
ATGTCACCAAAATTATTCCC+AGG + chr5.3:12496665-12496684 MS.gene68039:intron 35.0%
ATTGACGAGGGGTTAAATAT+AGG + chr5.3:12492547-12492566 MS.gene68039:intron 35.0%
ATTGATGCTCTCAAATCACT+AGG - chr5.3:12492713-12492732 None:intergenic 35.0%
CACCATCTTCAATAGTTTCA+CGG - chr5.3:12494450-12494469 None:intergenic 35.0%
CAGGAGTTCAACATTTGTTT+GGG + chr5.3:12493426-12493445 MS.gene68039:intron 35.0%
CATCAAACAAAGGTTTCCTT+AGG - chr5.3:12496648-12496667 None:intergenic 35.0%
CATTATCTCTTGTAGAACTC+AGG - chr5.3:12497277-12497296 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG + chr5.3:12496445-12496464 MS.gene68039:CDS 35.0%
CCATTCTCAATAAATCCACA+TGG - chr5.3:12496448-12496467 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG + chr5.3:12495519-12495538 MS.gene68039:CDS 35.0%
GAATATGGATGAGTTTGGTA+TGG + chr5.3:12492220-12492239 MS.gene68039:CDS 35.0%
GAGTTTGAGAGAAAAATGAG+TGG - chr5.3:12494552-12494571 None:intergenic 35.0%
GCAATGGTTATTCACTATGT+TGG + chr5.3:12494215-12494234 MS.gene68039:intron 35.0%
GCAGAATGGTAATTGCAAAT+TGG + chr5.3:12493460-12493479 MS.gene68039:intron 35.0%
GGAGATATCAAAATAAGGGA+TGG + chr5.3:12492960-12492979 MS.gene68039:intron 35.0%
GTACCTACGTAAGTTCATAA+AGG + chr5.3:12496926-12496945 MS.gene68039:intron 35.0%
GTATCTAGATATAGAGAAGG+TGG - chr5.3:12494895-12494914 None:intergenic 35.0%
GTGACTGAATTCATGATCAT+TGG - chr5.3:12495272-12495291 None:intergenic 35.0%
GTTCTCCCAAGATTATGTTA+GGG + chr5.3:12492519-12492538 MS.gene68039:intron 35.0%
GTTGTTTGTTCTCTGTATGT+TGG + chr5.3:12493712-12493731 MS.gene68039:intron 35.0%
TACAAGACATGCAAAAAGTG+GGG + chr5.3:12493685-12493704 MS.gene68039:intron 35.0%
TATGAGTTCTTCACTGTGTT+TGG + chr5.3:12494156-12494175 MS.gene68039:intron 35.0%
TCCGTATCTAGATATAGAGA+AGG - chr5.3:12494898-12494917 None:intergenic 35.0%
TCTTTGTCTTTGACATTTGC+AGG + chr5.3:12495604-12495623 MS.gene68039:intron 35.0%
TGAGCTGCGTAATAAAAGAA+CGG + chr5.3:12493238-12493257 MS.gene68039:intron 35.0%
TGAGGAATCATGATGATTGA+TGG + chr5.3:12493190-12493209 MS.gene68039:intron 35.0%
TGCATCACTATATGCATCAT+CGG - chr5.3:12493641-12493660 None:intergenic 35.0%
TGTCTCAAGATTTGGACTTA+TGG + chr5.3:12494016-12494035 MS.gene68039:CDS 35.0%
TTACGTATTACACTGTTGGT+AGG + chr5.3:12497133-12497152 MS.gene68039:intron 35.0%
TTCAATACATTCATGGACGA+AGG - chr5.3:12492372-12492391 None:intergenic 35.0%
TTCGCTAGGATATTCCTTTA+TGG - chr5.3:12496013-12496032 None:intergenic 35.0%
TTGACGAGGGGTTAAATATA+GGG + chr5.3:12492548-12492567 MS.gene68039:intron 35.0%
TTGATGCTCTCAAATCACTA+GGG - chr5.3:12492712-12492731 None:intergenic 35.0%
TTGGTCCTGACTTTCAAATA+GGG + chr5.3:12492432-12492451 MS.gene68039:intron 35.0%
TTGTACTGCCCATTTATAAC+TGG + chr5.3:12493780-12493799 MS.gene68039:intron 35.0%
TTTGAGAGAAAAATGAGTGG+AGG - chr5.3:12494549-12494568 None:intergenic 35.0%
TTTGGTCCTGACTTTCAAAT+AGG + chr5.3:12492431-12492450 MS.gene68039:intron 35.0%
TTTGTTCTCTGTATGTTGGT+GGG + chr5.3:12493716-12493735 MS.gene68039:intron 35.0%
! AACTGGAATAAGTTTTGCTC+AGG + chr5.3:12493797-12493816 MS.gene68039:intron 35.0%
! ACAACAGGGCATTTCAAATT+TGG - chr5.3:12493302-12493321 None:intergenic 35.0%
! ATGATGATTGATGGTCTACT+TGG + chr5.3:12493199-12493218 MS.gene68039:intron 35.0%
! CAGTGACACCTTTAAGTTAA+TGG - chr5.3:12494663-12494682 None:intergenic 35.0%
! CCAATTTTATAAGCAGCTGA+AGG - chr5.3:12495522-12495541 None:intergenic 35.0%
! CTCCTTAATGCTCTTTAGAA+AGG - chr5.3:12496611-12496630 None:intergenic 35.0%
! GAGTTCTAGTTACTCCATAA+AGG + chr5.3:12495996-12496015 MS.gene68039:intron 35.0%
! GGTCTTTCTGGGTAAAATTT+TGG + chr5.3:12497210-12497229 MS.gene68039:intron 35.0%
! GTTAACTAACTTGGTCTTTC+TGG + chr5.3:12497198-12497217 MS.gene68039:intron 35.0%
! TACAGATTTGTTCCACCAAT+CGG + chr5.3:12497445-12497464 MS.gene68039:CDS 35.0%
! TGCTTGCCTTTATTTATTGG+TGG + chr5.3:12496368-12496387 MS.gene68039:intron 35.0%
! TGGCTTGGAATTTATTTGCA+GGG + chr5.3:12497376-12497395 MS.gene68039:intron 35.0%
! TTAGAAGTTTGGGATCTACA+AGG + chr5.3:12495398-12495417 MS.gene68039:intron 35.0%
! TTCTTTAAGAAACTATGCCC+AGG - chr5.3:12496773-12496792 None:intergenic 35.0%
! TTTTCTTTTCCAGTTTGGAC+GGG + chr5.3:12492841-12492860 MS.gene68039:intron 35.0%
!! AAGATGAAGCTCTAAACCAT+TGG - chr5.3:12496285-12496304 None:intergenic 35.0%
!! AAGTTTATAGAGCTTTGAGC+AGG + chr5.3:12495838-12495857 MS.gene68039:intron 35.0%
!! AGATGAAGCTCTAAACCATT+GGG - chr5.3:12496284-12496303 None:intergenic 35.0%
!! CATTTTGCTTTAGATTGGGT+TGG + chr5.3:12496999-12497018 MS.gene68039:intron 35.0%
!! CGCATGTTGATTTATAAACG+TGG + chr5.3:12496840-12496859 MS.gene68039:intron 35.0%
!! CTTTCTAAAGAGCATTAAGG+AGG + chr5.3:12496609-12496628 MS.gene68039:intron 35.0%
!! GTGACGTAGTTGATAGTAAA+TGG + chr5.3:12492601-12492620 MS.gene68039:intron 35.0%
!! TTGGCTTGGAATTTATTTGC+AGG + chr5.3:12497375-12497394 MS.gene68039:intron 35.0%
!! TTGGTGGTTTCTCTTTTTAC+AGG + chr5.3:12496384-12496403 MS.gene68039:intron 35.0%
!!! GGCTATGGTTTTTTAGAGTT+TGG + chr5.3:12493741-12493760 MS.gene68039:intron 35.0%
!!! GGTTGATGATTTGTTTTCCT+GGG + chr5.3:12496753-12496772 MS.gene68039:intron 35.0%
!!! TAGAATCATCCTTTTTGGCT+TGG + chr5.3:12497361-12497380 MS.gene68039:intron 35.0%
AAGATGATTCAGACAAAGCG+AGG - chr5.3:12494721-12494740 None:intergenic 40.0%
ACCAATTCTCAGACCTTTCA+AGG - chr5.3:12494422-12494441 None:intergenic 40.0%
AGGGAGATGGTTAAAACCTA+AGG + chr5.3:12496629-12496648 MS.gene68039:intron 40.0%
AGGGATGGAGAAAAAGACTA+AGG + chr5.3:12492975-12492994 MS.gene68039:intron 40.0%
ATAACTAGTTGTGCACCCAA+TGG + chr5.3:12496266-12496285 MS.gene68039:intron 40.0%
ATACTTCTCCATGCAATTGC+TGG + chr5.3:12494098-12494117 MS.gene68039:CDS 40.0%
ATATTACAAACGAGCACAGC+AGG + chr5.3:12495189-12495208 MS.gene68039:CDS 40.0%
ATGAACTTACGTAGGTACCA+GGG - chr5.3:12496924-12496943 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG - chr5.3:12495168-12495187 None:intergenic 40.0%
CCAATTCTCAGACCTTTCAA+GGG - chr5.3:12494421-12494440 None:intergenic 40.0%
CCACTCTTGTTCTTTATGTG+AGG + chr5.3:12495365-12495384 MS.gene68039:intron 40.0%
CCTCACATAAAGAACAAGAG+TGG - chr5.3:12495368-12495387 None:intergenic 40.0%
CTAGCTCATCAGCATAAACT+TGG - chr5.3:12494923-12494942 None:intergenic 40.0%
CTATGATGGTATTAGGTCAG+TGG + chr5.3:12494754-12494773 MS.gene68039:intron 40.0%
CTGCACCATAAAGCAATTGT+AGG - chr5.3:12493490-12493509 None:intergenic 40.0%
GAACTTGCAGTTACTTAGGA+GGG + chr5.3:12496863-12496882 MS.gene68039:intron 40.0%
GAGAGAGATTATAGAGGATC+TGG + chr5.3:12493588-12493607 MS.gene68039:intron 40.0%
GAGCTTACGTATTACACTGT+TGG + chr5.3:12497129-12497148 MS.gene68039:intron 40.0%
GATCGCCTACAATTGCTTTA+TGG + chr5.3:12493482-12493501 MS.gene68039:intron 40.0%
GATTGGTGCAGCATTTAATG+AGG + chr5.3:12496498-12496517 MS.gene68039:CDS 40.0%
GCAGGAGTTCAACATTTGTT+TGG + chr5.3:12493425-12493444 MS.gene68039:intron 40.0%
GCATCACTATATGCATCATC+GGG - chr5.3:12493640-12493659 None:intergenic 40.0%
GTGAAGAGAGTTAAGGAGTT+GGG + chr5.3:12492176-12492195 MS.gene68039:CDS 40.0%
GTTAGGGACTAAATTGACGA+GGG + chr5.3:12492535-12492554 MS.gene68039:intron 40.0%
GTTTGTTCTCTGTATGTTGG+TGG + chr5.3:12493715-12493734 MS.gene68039:intron 40.0%
TAGAGAGATTGTAGAGGATC+CGG + chr5.3:12493532-12493551 MS.gene68039:intron 40.0%
TATCATGACCAGCAATTGCA+TGG - chr5.3:12494109-12494128 None:intergenic 40.0%
TATGAACTTACGTAGGTACC+AGG - chr5.3:12496925-12496944 None:intergenic 40.0%
TATGGACGTGTCTCAAGATT+TGG + chr5.3:12494008-12494027 MS.gene68039:CDS 40.0%
TCATACTTGCTTACTTGAGG+TGG - chr5.3:12494141-12494160 None:intergenic 40.0%
TCTGGGTCAGTTGAAAATTG+TGG + chr5.3:12493606-12493625 MS.gene68039:intron 40.0%
TGTCTCGCTATGATGGTATT+AGG + chr5.3:12494747-12494766 MS.gene68039:CDS 40.0%
TGTTAGGGACTAAATTGACG+AGG + chr5.3:12492534-12492553 MS.gene68039:intron 40.0%
TGTTGTTGGGAAGACGAATA+TGG + chr5.3:12492205-12492224 MS.gene68039:CDS 40.0%
TTAGGGACTAAATTGACGAG+GGG + chr5.3:12492536-12492555 MS.gene68039:intron 40.0%
TTATTGAGAATGGACCGACA+GGG + chr5.3:12496455-12496474 MS.gene68039:CDS 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG + chr5.3:12494406-12494425 MS.gene68039:CDS 40.0%
TTTATGGTGCAGTCTCTGTA+GGG + chr5.3:12493498-12493517 MS.gene68039:intron 40.0%
TTTATTGAGAATGGACCGAC+AGG + chr5.3:12496454-12496473 MS.gene68039:CDS 40.0%
! CTCATTTTACATGAGCATGC+CGG + chr5.3:12496339-12496358 MS.gene68039:intron 40.0%
! GTAGGTTTGAAGCCAACATA+TGG + chr5.3:12493990-12494009 MS.gene68039:CDS 40.0%
! TATGAGAAGGTATGAGTGAG+AGG + chr5.3:12493341-12493360 MS.gene68039:intron 40.0%
! TCATTTTACATGAGCATGCC+GGG + chr5.3:12496340-12496359 MS.gene68039:intron 40.0%
! TGGTGTTCTTGTTGCTGTTA+AGG + chr5.3:12492070-12492089 MS.gene68039:CDS 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG + chr5.3:12494457-12494476 MS.gene68039:CDS 40.0%
!! GAATAGCTTTAAGGAAGCAC+TGG + chr5.3:12495464-12495483 MS.gene68039:CDS 40.0%
!! TGATGCTGCTTCACATTTTG+AGG + chr5.3:12494498-12494517 MS.gene68039:CDS 40.0%
!!! CGGTTGATGATTTGTTTTCC+TGG + chr5.3:12496752-12496771 MS.gene68039:intron 40.0%
!!! GCTTCACATTTTGAGGCATT+AGG + chr5.3:12494505-12494524 MS.gene68039:CDS 40.0%
AAAGAGTGGAACGTGGAGTT+TGG - chr5.3:12491779-12491798 None:intergenic 45.0%
AAAGCGAGGACATAGTATGC+TGG - chr5.3:12494707-12494726 None:intergenic 45.0%
AAGAGAGTTAAGGAGTTGGG+TGG + chr5.3:12492179-12492198 MS.gene68039:CDS 45.0%
AAGAGGACCAATTTCCTTGC+CGG - chr5.3:12492048-12492067 None:intergenic 45.0%
AAGGAAATTGGTCCTCTTGC+TGG + chr5.3:12492050-12492069 MS.gene68039:CDS 45.0%
ACAACACCGCAAAAAGATGC+CGG - chr5.3:12493972-12493991 None:intergenic 45.0%
ACCATCATAGCGAGACAAGT+TGG - chr5.3:12494744-12494763 None:intergenic 45.0%
AGAGACACACTACAGTGCAA+AGG - chr5.3:12492758-12492777 None:intergenic 45.0%
AGAGAGATTGTAGAGGATCC+GGG + chr5.3:12493533-12493552 MS.gene68039:intron 45.0%
AGAGAGTTAAGGAGTTGGGT+GGG + chr5.3:12492180-12492199 MS.gene68039:CDS 45.0%
AGAGTCCACTAGTGTTAGTG+TGG + chr5.3:12493155-12493174 MS.gene68039:intron 45.0%
AGTCCACTAGTGTTAGTGTG+GGG + chr5.3:12493157-12493176 MS.gene68039:intron 45.0%
ATGCTGCACCAATCATTTGC+AGG - chr5.3:12496492-12496511 None:intergenic 45.0%
ATTAGGATGCTCTGTGAACG+AGG + chr5.3:12494522-12494541 MS.gene68039:CDS 45.0%
ATTCCAGGGACAATCAATCC+TGG - chr5.3:12496686-12496705 None:intergenic 45.0%
CACTGAACTTCATGTTGACG+AGG + chr5.3:12496543-12496562 MS.gene68039:intron 45.0%
CACTGAAGCTTCTGCTTATC+AGG + chr5.3:12492250-12492269 MS.gene68039:CDS 45.0%
CAGGTTAATGTCAACCTAGC+TGG + chr5.3:12496403-12496422 MS.gene68039:intron 45.0%
CCCTTGAAAGGTCTGAGAAT+TGG + chr5.3:12494418-12494437 MS.gene68039:CDS 45.0%
CGAGGATACTTGAGGGTTAT+CGG + chr5.3:12492132-12492151 MS.gene68039:CDS 45.0%
CTGATAAGCAGAAGCTTCAG+TGG - chr5.3:12492252-12492271 None:intergenic 45.0%
CTTGAGACACGTCCATATGT+TGG - chr5.3:12494005-12494024 None:intergenic 45.0%
CTTTATGGTGCAGTCTCTGT+AGG + chr5.3:12493497-12493516 MS.gene68039:intron 45.0%
GAGTCCACTAGTGTTAGTGT+GGG + chr5.3:12493156-12493175 MS.gene68039:intron 45.0%
GAGTGAGAGGTGACAATATG+TGG + chr5.3:12493354-12493373 MS.gene68039:intron 45.0%
GATCCTTTGGCTATGTATGC+TGG + chr5.3:12495640-12495659 MS.gene68039:CDS 45.0%
GATGAGCTAGACTCTCTCTA+TGG + chr5.3:12494933-12494952 MS.gene68039:CDS 45.0%
GGAACTTGCAGTTACTTAGG+AGG + chr5.3:12496862-12496881 MS.gene68039:intron 45.0%
GGCATAAACCAGCAGTTATG+TGG - chr5.3:12495864-12495883 None:intergenic 45.0%
GGGAGAGAAAATGAGCAGAA+TGG + chr5.3:12493446-12493465 MS.gene68039:intron 45.0%
GGTGAAGAGAGTTAAGGAGT+TGG + chr5.3:12492175-12492194 MS.gene68039:CDS 45.0%
GTATCGTTGGGAAGTGATAC+TGG + chr5.3:12493930-12493949 MS.gene68039:CDS 45.0%
GTGGGAACTTGCAGTTACTT+AGG + chr5.3:12496859-12496878 MS.gene68039:intron 45.0%
TAACCCCACACTAACACTAG+TGG - chr5.3:12493163-12493182 None:intergenic 45.0%
TACCTCAGAACCTAACCCTT+TGG - chr5.3:12494970-12494989 None:intergenic 45.0%
TCACCAGCATACATAGCCAA+AGG - chr5.3:12495646-12495665 None:intergenic 45.0%
TCCAACTTGTCTCGCTATGA+TGG + chr5.3:12494740-12494759 MS.gene68039:CDS 45.0%
TGAACTTACGTAGGTACCAG+GGG - chr5.3:12496923-12496942 None:intergenic 45.0%
TTCCAGGGACAATCAATCCT+GGG - chr5.3:12496685-12496704 None:intergenic 45.0%
TTGGGCTAAGAAGACTTGAG+AGG - chr5.3:12495253-12495272 None:intergenic 45.0%
! AGTTGGGTGGGATTGTTGTT+GGG + chr5.3:12492192-12492211 MS.gene68039:CDS 45.0%
! CATTGGCTGCTTTGGTTCAT+CGG + chr5.3:12494061-12494080 MS.gene68039:CDS 45.0%
! GTGATACTGGTGGAAGTATG+AGG + chr5.3:12493943-12493962 MS.gene68039:CDS 45.0%
! TGTTAGTGTGGGGTTAGTGT+TGG + chr5.3:12493167-12493186 MS.gene68039:intron 45.0%
! TTCTCTGTATGTTGGTGGGT+TGG + chr5.3:12493720-12493739 MS.gene68039:intron 45.0%
!! AAGAGCATTAAGGAGGGAGA+TGG + chr5.3:12496616-12496635 MS.gene68039:intron 45.0%
!!! GCATCTTTTTGCGGTGTTGT+AGG + chr5.3:12493972-12493991 MS.gene68039:CDS 45.0%
AAGCGTGAAAGAGTGGAACG+TGG - chr5.3:12491786-12491805 None:intergenic 50.0%
AAGTATCCTCGATCCACCAG+TGG - chr5.3:12492123-12492142 None:intergenic 50.0%
ACGGAGGGTGAGAATTTGAG+AGG - chr5.3:12491868-12491887 None:intergenic 50.0%
AGAGTAGCTTGGGTGGATGA+TGG - chr5.3:12491816-12491835 None:intergenic 50.0%
AGCCAAAGGGTTAGGTTCTG+AGG + chr5.3:12494965-12494984 MS.gene68039:CDS 50.0%
AGGCAGTGCGTTGTATCGTT+GGG + chr5.3:12493918-12493937 MS.gene68039:CDS 50.0%
AGGGTGAGAATTTGAGAGGG+AGG - chr5.3:12491864-12491883 None:intergenic 50.0%
ATCTCTGCCGGCAAGGAAAT+TGG + chr5.3:12492038-12492057 MS.gene68039:CDS 50.0%
ATGGAGATTCCCGAGCCAAA+GGG + chr5.3:12494952-12494971 MS.gene68039:CDS 50.0%
CAGAACCTAACCCTTTGGCT+CGG - chr5.3:12494965-12494984 None:intergenic 50.0%
CCAATCATTTGCAGGCCAAC+AGG - chr5.3:12496484-12496503 None:intergenic 50.0%
CCACATGGTAAAACCAAGGC+AGG - chr5.3:12496433-12496452 None:intergenic 50.0%
CGATGAACCAAAGCAGCCAA+TGG - chr5.3:12494063-12494082 None:intergenic 50.0%
CGGAGGGTGAGAATTTGAGA+GGG - chr5.3:12491867-12491886 None:intergenic 50.0%
GAGAATTTGAGAGGGAGGTG+CGG - chr5.3:12491859-12491878 None:intergenic 50.0%
GAGTAGCTTGGGTGGATGAT+GGG - chr5.3:12491815-12491834 None:intergenic 50.0%
GAGTGGATGCATATCGTGTC+TGG - chr5.3:12495351-12495370 None:intergenic 50.0%
GAGTTGGGTGGGATTGTTGT+TGG + chr5.3:12492191-12492210 MS.gene68039:CDS 50.0%
GCAACAAGAACACCAGCAAG+AGG - chr5.3:12492065-12492084 None:intergenic 50.0%
GCGTCATCACTTGATGCCAT+TGG + chr5.3:12494044-12494063 MS.gene68039:CDS 50.0%
GGGGTGTGTAAGAGTAGCTT+GGG - chr5.3:12491826-12491845 None:intergenic 50.0%
GGTGGATCGAGGATACTTGA+GGG + chr5.3:12492125-12492144 MS.gene68039:CDS 50.0%
GTCATGTGCTTGAGCGATGA+GGG - chr5.3:12492006-12492025 None:intergenic 50.0%
GTGCGCCCTATTTGAAAGTC+AGG - chr5.3:12492440-12492459 None:intergenic 50.0%
GTGTGTAAGAGTAGCTTGGG+TGG - chr5.3:12491823-12491842 None:intergenic 50.0%
TATGGAGATTCCCGAGCCAA+AGG + chr5.3:12494951-12494970 MS.gene68039:CDS 50.0%
TCAACGCTATCAGCTCCGAT+TGG - chr5.3:12497463-12497482 None:intergenic 50.0%
TCGTTGGGAAGTGATACTGG+TGG + chr5.3:12493933-12493952 MS.gene68039:CDS 50.0%
TGCTGTGTAGTTGAGACGCA+TGG - chr5.3:12496097-12496116 None:intergenic 50.0%
TGTTCGGTTGTGGGTGTACT+TGG - chr5.3:12494814-12494833 None:intergenic 50.0%
TTCCCAGGATTGATTGTCCC+TGG + chr5.3:12496680-12496699 MS.gene68039:intron 50.0%
! AGAACCTAACCCTTTGGCTC+GGG - chr5.3:12494964-12494983 None:intergenic 50.0%
! CACTGCCATCCTTTTCGCTT+GGG + chr5.3:12494678-12494697 MS.gene68039:CDS 50.0%
! CCTGTTGGCCTGCAAATGAT+TGG + chr5.3:12496481-12496500 MS.gene68039:CDS 50.0%
! CTTGATGCCATTGGCTGCTT+TGG + chr5.3:12494053-12494072 MS.gene68039:CDS 50.0%
! GTTCATCGGTTGCTGATGCT+GGG + chr5.3:12494075-12494094 MS.gene68039:CDS 50.0%
! TCACTGCCATCCTTTTCGCT+TGG + chr5.3:12494677-12494696 MS.gene68039:CDS 50.0%
! TGGTGGATCGAGGATACTTG+AGG + chr5.3:12492124-12492143 MS.gene68039:CDS 50.0%
! TTGAGCGATGAGGGATTGGT+CGG - chr5.3:12491997-12492016 None:intergenic 50.0%
!! AGTTGGTGAGAAGGGAGTGA+CGG - chr5.3:12491887-12491906 None:intergenic 50.0%
!! GTATGTTGGTGGGTTGGCTA+TGG + chr5.3:12493726-12493745 MS.gene68039:intron 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG + chr5.3:12496430-12496449 MS.gene68039:CDS 50.0%
AAGCAGCTGAAGGAGCTGCA+GGG - chr5.3:12495512-12495531 None:intergenic 55.0%
AAGGGAGGTGGAGGAAGGAA+CGG - chr5.3:12491974-12491993 None:intergenic 55.0%
AATAGGTGACTGCCAACCCG+TGG + chr5.3:12493838-12493857 MS.gene68039:intron 55.0%
ACGCTATCAGCTCCGATTGG+TGG - chr5.3:12497460-12497479 None:intergenic 55.0%
ACTTGGACGAAGAGAGCGAG+AGG - chr5.3:12494797-12494816 None:intergenic 55.0%
AGGAGGATCATCCGGAGGAT+CGG + chr5.3:12493878-12493897 MS.gene68039:CDS 55.0%
ATAGGTGACTGCCAACCCGT+GGG + chr5.3:12493839-12493858 MS.gene68039:intron 55.0%
ATCCTCGATCCACCAGTGGA+CGG - chr5.3:12492119-12492138 None:intergenic 55.0%
CAACCCGTGGGATGTTTCCA+GGG + chr5.3:12493851-12493870 MS.gene68039:CDS 55.0%
CAACGATACAACGCACTGCC+TGG - chr5.3:12493919-12493938 None:intergenic 55.0%
CAGGCAGTGCGTTGTATCGT+TGG + chr5.3:12493917-12493936 MS.gene68039:CDS 55.0%
CTAGACCGCAGAATCTCTGC+CGG + chr5.3:12492026-12492045 MS.gene68039:CDS 55.0%
CTTACAGAGACTGCACCACC+CGG - chr5.3:12493554-12493573 None:intergenic 55.0%
CTTGGACGAAGAGAGCGAGA+GGG - chr5.3:12494796-12494815 None:intergenic 55.0%
GACGGCGGTGAAGAGAGTTA+AGG + chr5.3:12492169-12492188 MS.gene68039:CDS 55.0%
GAGATTGTAGAGGATCCGGG+TGG + chr5.3:12493536-12493555 MS.gene68039:intron 55.0%
GAGGTGGGATTGGATGAGGT+CGG - chr5.3:12491922-12491941 None:intergenic 55.0%
GATTCCCGAGCCAAAGGGTT+AGG + chr5.3:12494957-12494976 MS.gene68039:CDS 55.0%
GCATGAATGCCCGTCCAAAC+TGG - chr5.3:12492853-12492872 None:intergenic 55.0%
GGCAACCCAAGCGAAAAGGA+TGG - chr5.3:12494686-12494705 None:intergenic 55.0%
GGGACATATGCCCTTTCAGC+TGG + chr5.3:12495154-12495173 MS.gene68039:CDS 55.0%
GGTCATGTGCTTGAGCGATG+AGG - chr5.3:12492007-12492026 None:intergenic 55.0%
GTGCTTGAGCGATGAGGGAT+TGG - chr5.3:12492001-12492020 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG - chr5.3:12495513-12495532 None:intergenic 55.0%
TGAGCAGGCCACATAACTGC+TGG + chr5.3:12495853-12495872 MS.gene68039:intron 55.0%
TGCTGGCAACCCAAGCGAAA+AGG - chr5.3:12494690-12494709 None:intergenic 55.0%
TTCACCGCCGTCGCATCAAA+AGG - chr5.3:12492161-12492180 None:intergenic 55.0%
TTGGACGAAGAGAGCGAGAG+GGG - chr5.3:12494795-12494814 None:intergenic 55.0%
! AAGAGAGCGAGAGGGGTACA+TGG - chr5.3:12494788-12494807 None:intergenic 55.0%
! AATTTGAGAGGGAGGTGCGG+TGG - chr5.3:12491856-12491875 None:intergenic 55.0%
! AGAGAGCGAGAGGGGTACAT+GGG - chr5.3:12494787-12494806 None:intergenic 55.0%
! AGGCAGCCGGCATCTTTTTG+CGG + chr5.3:12493963-12493982 MS.gene68039:CDS 55.0%
! GAGGGAGAAGCGTGAAAGAG+TGG - chr5.3:12491793-12491812 None:intergenic 55.0%
! GGAACGTGGAGTTTGGAGTG+TGG - chr5.3:12491772-12491791 None:intergenic 55.0%
! GGGGGTGTGTAAGAGTAGCT+TGG - chr5.3:12491827-12491846 None:intergenic 55.0%
! GGTTCATCGGTTGCTGATGC+TGG + chr5.3:12494074-12494093 MS.gene68039:CDS 55.0%
! TCGGCCTCCTTTTGATGCGA+CGG + chr5.3:12492151-12492170 MS.gene68039:CDS 55.0%
! TGGTGGAAGTATGAGGCAGC+CGG + chr5.3:12493950-12493969 MS.gene68039:CDS 55.0%
!! AGCTTGGGTGGATGATGGGA+GGG - chr5.3:12491811-12491830 None:intergenic 55.0%
!! CGATGAGGGATTGGTCGGAA+GGG - chr5.3:12491992-12492011 None:intergenic 55.0%
!! GGAGAGGGAGTTGGTGAGAA+GGG - chr5.3:12491895-12491914 None:intergenic 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG + chr5.3:12493172-12493191 MS.gene68039:intron 55.0%
!! TAGCTTGGGTGGATGATGGG+AGG - chr5.3:12491812-12491831 None:intergenic 55.0%
AACTGCAGCTGCCGATCCTC+CGG - chr5.3:12493892-12493911 None:intergenic 60.0%
ACCGCCGTCGCATCAAAAGG+AGG - chr5.3:12492158-12492177 None:intergenic 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG - chr5.3:12495511-12495530 None:intergenic 60.0%
AGGCCAACAGGAAGCCCTGT+CGG - chr5.3:12496472-12496491 None:intergenic 60.0%
ATTGGTCGGAAGGGAGGTGG+AGG - chr5.3:12491983-12492002 None:intergenic 60.0%
CAGGGAGAGCTGCTGAGAGT+GGG + chr5.3:12497394-12497413 MS.gene68039:intron 60.0%
CCAACCCGTGGGATGTTTCC+AGG + chr5.3:12493850-12493869 MS.gene68039:CDS 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG - chr5.3:12496420-12496439 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG + chr5.3:12496417-12496436 MS.gene68039:CDS 60.0%
CCTGGAAACATCCCACGGGT+TGG - chr5.3:12493853-12493872 None:intergenic 60.0%
CCTTGCCGGCAGAGATTCTG+CGG - chr5.3:12492034-12492053 None:intergenic 60.0%
CGGCAGAGATTCTGCGGTCT+AGG - chr5.3:12492028-12492047 None:intergenic 60.0%
CGGGTGGTGCAGTCTCTGTA+AGG + chr5.3:12493552-12493571 MS.gene68039:intron 60.0%
GAAGGAACGGAGGTGGGGTT+CGG - chr5.3:12491961-12491980 None:intergenic 60.0%
GATCCTCCGGATGATCCTCC+TGG - chr5.3:12493879-12493898 None:intergenic 60.0%
GCACCCTGGAAACATCCCAC+GGG - chr5.3:12493857-12493876 None:intergenic 60.0%
GGATTGGATGAGGTCGGTGG+CGG - chr5.3:12491916-12491935 None:intergenic 60.0%
GGCACCCTGGAAACATCCCA+CGG - chr5.3:12493858-12493877 None:intergenic 60.0%
GGGTGAGGTGGGATTGGATG+AGG - chr5.3:12491926-12491945 None:intergenic 60.0%
GTGGAGGAAGGAACGGAGGT+GGG - chr5.3:12491967-12491986 None:intergenic 60.0%
GTGGGATTGGATGAGGTCGG+TGG - chr5.3:12491919-12491938 None:intergenic 60.0%
TGGAGGAAGGAACGGAGGTG+GGG - chr5.3:12491966-12491985 None:intergenic 60.0%
TGGTGAGAAGGGAGTGACGG+AGG - chr5.3:12491884-12491903 None:intergenic 60.0%
! AGGGTGCCAGGAGGATCATC+CGG + chr5.3:12493870-12493889 MS.gene68039:CDS 60.0%
! GAGAGCGAGAGGGGTACATG+GGG - chr5.3:12494786-12494805 None:intergenic 60.0%
! GATGTTTCCAGGGTGCCAGG+AGG + chr5.3:12493861-12493880 MS.gene68039:CDS 60.0%
! GCCTCCTTTTGATGCGACGG+CGG + chr5.3:12492154-12492173 MS.gene68039:CDS 60.0%
! GGTGAGAAGGGAGTGACGGA+GGG - chr5.3:12491883-12491902 None:intergenic 60.0%
! TGGGATGTTTCCAGGGTGCC+AGG + chr5.3:12493858-12493877 MS.gene68039:CDS 60.0%
!! CGGAGAGGGAGTTGGTGAGA+AGG - chr5.3:12491896-12491915 None:intergenic 60.0%
!! GCGATGAGGGATTGGTCGGA+AGG - chr5.3:12491993-12492012 None:intergenic 60.0%
!! TGAGGGATTGGTCGGAAGGG+AGG - chr5.3:12491989-12492008 None:intergenic 60.0%
ACGGCTGACATGCCGTCCAC+TGG + chr5.3:12492104-12492123 MS.gene68039:CDS 65.0%
CCGCAGAATCTCTGCCGGCA+AGG + chr5.3:12492031-12492050 MS.gene68039:CDS 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG + chr5.3:12493898-12493917 MS.gene68039:CDS 65.0%
GCAGGGAGAGCTGCTGAGAG+TGG + chr5.3:12497393-12497412 MS.gene68039:intron 65.0%
GCTGACATGCCGTCCACTGG+TGG + chr5.3:12492107-12492126 MS.gene68039:CDS 65.0%
GGACCGACAGGGCTTCCTGT+TGG + chr5.3:12496466-12496485 MS.gene68039:CDS 65.0%
GGAGGTGGAGGAAGGAACGG+AGG - chr5.3:12491971-12491990 None:intergenic 65.0%
GGATGATCCTCCTGGCACCC+TGG - chr5.3:12493871-12493890 None:intergenic 65.0%
GGTGGAGGAAGGAACGGAGG+TGG - chr5.3:12491968-12491987 None:intergenic 65.0%
GTCGGAAGGGAGGTGGAGGA+AGG - chr5.3:12491979-12491998 None:intergenic 65.0%
GTGCCAGGAGGATCATCCGG+AGG + chr5.3:12493873-12493892 MS.gene68039:CDS 65.0%
! TGCCGTCCACTGGTGGATCG+AGG + chr5.3:12492114-12492133 MS.gene68039:CDS 65.0%
!! GATGAGGTCGGTGGCGGAGA+GGG - chr5.3:12491910-12491929 None:intergenic 65.0%
!! GGAGGTGGGGTTCGGTGAGA+CGG - chr5.3:12491953-12491972 None:intergenic 65.0%
!! GGGATTGGTCGGAAGGGAGG+TGG - chr5.3:12491986-12492005 None:intergenic 65.0%
GAGACGGAGGCGGGTGAGGT+GGG - chr5.3:12491937-12491956 None:intergenic 70.0%
GGAGGCGGGTGAGGTGGGAT+TGG - chr5.3:12491932-12491951 None:intergenic 70.0%
TGAGACGGAGGCGGGTGAGG+TGG - chr5.3:12491938-12491957 None:intergenic 70.0%
! AGGGAGGTGCGGTGGCAGGT+GGG - chr5.3:12491848-12491867 None:intergenic 70.0%
! TGAGAGGGAGGTGCGGTGGC+AGG - chr5.3:12491852-12491871 None:intergenic 70.0%
!! GGATGAGGTCGGTGGCGGAG+AGG - chr5.3:12491911-12491930 None:intergenic 70.0%
!! GGGGTTCGGTGAGACGGAGG+CGG - chr5.3:12491947-12491966 None:intergenic 70.0%
!! GGGTTCGGTGAGACGGAGGC+GGG - chr5.3:12491946-12491965 None:intergenic 70.0%
!! GGTGGGGTTCGGTGAGACGG+AGG - chr5.3:12491950-12491969 None:intergenic 70.0%
!! GTCGGTGGCGGAGAGGGAGT+TGG - chr5.3:12491904-12491923 None:intergenic 70.0%
CGGTGAGACGGAGGCGGGTG+AGG - chr5.3:12491941-12491960 None:intergenic 75.0%
GAGGTGCGGTGGCAGGTGGG+GGG - chr5.3:12491845-12491864 None:intergenic 75.0%
! GAGGGAGGTGCGGTGGCAGG+TGG - chr5.3:12491849-12491868 None:intergenic 75.0%
! GGAGGTGCGGTGGCAGGTGG+GGG - chr5.3:12491846-12491865 None:intergenic 75.0%
! GGGAGGTGCGGTGGCAGGTG+GGG - chr5.3:12491847-12491866 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 12491756 12497486 12491756 ID=MS.gene68039
chr5.3 mRNA 12491756 12497486 12491756 ID=MS.gene68039.t1;Parent=MS.gene68039
chr5.3 exon 12491756 12492271 12491756 ID=MS.gene68039.t1.exon1;Parent=MS.gene68039.t1
chr5.3 CDS 12491756 12492271 12491756 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12493843 12494154 12493843 ID=MS.gene68039.t1.exon2;Parent=MS.gene68039.t1
chr5.3 CDS 12493843 12494154 12493843 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12494364 12494543 12494364 ID=MS.gene68039.t1.exon3;Parent=MS.gene68039.t1
chr5.3 CDS 12494364 12494543 12494364 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12494674 12494768 12494674 ID=MS.gene68039.t1.exon4;Parent=MS.gene68039.t1
chr5.3 CDS 12494674 12494768 12494674 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12494911 12494986 12494911 ID=MS.gene68039.t1.exon5;Parent=MS.gene68039.t1
chr5.3 CDS 12494911 12494986 12494911 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12495133 12495210 12495133 ID=MS.gene68039.t1.exon6;Parent=MS.gene68039.t1
chr5.3 CDS 12495133 12495210 12495133 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12495447 12495540 12495447 ID=MS.gene68039.t1.exon7;Parent=MS.gene68039.t1
chr5.3 CDS 12495447 12495540 12495447 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12495626 12495675 12495626 ID=MS.gene68039.t1.exon8;Parent=MS.gene68039.t1
chr5.3 CDS 12495626 12495675 12495626 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12496406 12496519 12496406 ID=MS.gene68039.t1.exon9;Parent=MS.gene68039.t1
chr5.3 CDS 12496406 12496519 12496406 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
chr5.3 exon 12497397 12497486 12497397 ID=MS.gene68039.t1.exon10;Parent=MS.gene68039.t1
chr5.3 CDS 12497397 12497486 12497397 ID=cds.MS.gene68039.t1;Parent=MS.gene68039.t1
Gene Sequence

>MS.gene68039

ATGAAAATGCTATCCACACTCCAAACTCCACGTTCCACTCTTTCACGCTTCTCCCTCCCATCATCCACCCAAGCTACTCTTACACACCCCCCACCTGCCACCGCACCTCCCTCTCAAATTCTCACCCTCCGTCACTCCCTTCTCACCAACTCCCTCTCCGCCACCGACCTCATCCAATCCCACCTCACCCGCCTCCGTCTCACCGAACCCCACCTCCGTTCCTTCCTCCACCTCCCTTCCGACCAATCCCTCATCGCTCAAGCACATGACCTAGACCGCAGAATCTCTGCCGGCAAGGAAATTGGTCCTCTTGCTGGTGTTCTTGTTGCTGTTAAGGATAATATTTGTACGGCTGACATGCCGTCCACTGGTGGATCGAGGATACTTGAGGGTTATCGGCCTCCTTTTGATGCGACGGCGGTGAAGAGAGTTAAGGAGTTGGGTGGGATTGTTGTTGGGAAGACGAATATGGATGAGTTTGGTATGGGGAGTACCACTGAAGCTTCTGCTTATCAGGTTCTAACACTCGCTTTTCAATGTACCTTAGTCATAATTTGAAGTGAGTTTTGATTTTATGTTCTTTCTGTGAGTGTGTTTAATCTAATCTTTGAAACCTTCGTCCATGAATGTATTGAAATTGCAAACACATTCACACGTGCATTTTTTATTAGTCATTTTGGTCCTGACTTTCAAATAGGGCGCACTTAAATAATTATTAATATTTCAAAAAAGTCTCTGACTCTGTCAAATTTTACTTATATTAGTTCTCCCAAGATTATGTTAGGGACTAAATTGACGAGGGGTTAAATATAGGGACTAAATTGATTGTAAGTTGTTAAAATATAGTGACGTAGTTGATAGTAAATGGTTAAATAAAGGGACTGATTTGAAAGTTTTAATACATTTAGGAACTTTTTGAAATATTTCTAATTTCAGAGATCTATTTGAGAGCACCCTAGTGATTTGAGAGCATCAATCCATTTCATCTTTTTTTTTTTTCCTTTGCACTGTAGTGTGTCTCTGTTTGTTGTTTTTTATATCCGGTGTTTGTTTGTTTGTTTTGTTGATTTTGAGGATTAGTGTGTTTTTCTTTTCCAGTTTGGACGGGCATTCATGCTGAATTAGAATTAAGTTTGTATATTGACCTTATATTTTAGTTTTTGGATATATATTTATTATTATTGATGTATTCAATGTTAATAATGGAGATATCAAAATAAGGGATGGAGAAAAAGACTAAGGTTTCAATAATGTTCATATCACAATGGTTATGGAAATAAGGGTTACAAAGAGAAAATATAATAAAACATAAATGACTAGACTACTAACTTAGAAATATAAAAGGCCCGATACCATAAATCCAATATACTATTATCTAACATCTAGTATTCAATATGGGAGAGTCCACTAGTGTTAGTGTGGGGTTAGTGTTGGTGAGGAATCATGATGATTGATGGTCTACTTGGCTGATGTCGCACATGTTGAGCTGCGTAATAAAAGAACGGTGTCTTATGCAATATGCAGTATGCATCTAAGAATGTCTCCAAATTTGAAATGCCCTGTTGTTTGTAATATTAGTAATGAATATGAGAAGGTATGAGTGAGAGGTGACAATATGTGGTTACTTGTTTAAGATATCTTGTGTTTAGCAATTGAATTAAGTTTGTGAGCAGGAGTTCAACATTTGTTTGGGAGAGAAAATGAGCAGAATGGTAATTGCAAATTGGATCGCCTACAATTGCTTTATGGTGCAGTCTCTGTAGGGATTGTTAGATTTAGAGAGATTGTAGAGGATCCGGGTGGTGCAGTCTCTGTAAGGACCATTAGATTTAGAGAGAGATTATAGAGGATCTGGGTCAGTTGAAAATTGTGGATGAATAACCCGATGATGCATATAGTGATGCATTGCTAAGTTTATATTTTTGTTAATACAAGACATGCAAAAAGTGGGGTTCTGTTGTTTGTTCTCTGTATGTTGGTGGGTTGGCTATGGTTTTTTAGAGTTTGGTTTCTAGCTTTATTACTTGTACTGCCCATTTATAACTGGAATAAGTTTTGCTCAGGTGATGCATATGTTCATTCAATAGGTGACTGCCAACCCGTGGGATGTTTCCAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAGTGCGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTATGAGGCAGCCGGCATCTTTTTGCGGTGTTGTAGGTTTGAAGCCAACATATGGACGTGTCTCAAGATTTGGACTTATGGCGTATGCGTCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTTGCTGATGCTGGGATACTTCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACCTCAAGTAAGCAAGTATGAGTTCTTCACTGTGTTTGGTCCAAATGTTGTAAGATTTCTAAATTCTCGTTATTAGCAATGGTTATTCACTATGTTGGCTATAGTCTTTGTTCAATATGATGGATAATTGCTGAAGTTATTGCTAGTGTTTATTTGTTTTTTTCCTTCTTGTTATGAAGCCAATTTCTTTTCAACAATGAACAATCAATAATGTAATTTGTCAGGAGGTGCCCAACTTTCTATCTCATTTTAACTCTGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGTCTGAGAATTGGTTTGATCCGTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTACAATTCGTGATGCTGCTTCACATTTTGAGGCATTAGGATGCTCTGTGAACGAGGTCCTCCACTCATTTTTCTCTCAAACTCTGATCTGAATGATAATTTTTTAAGTTGCTCTACAAGCTTATATTATTACAATCTACTATTCATCCGTTATTTAACCCTTTTCATTTGTCCATTAACTTAAAGGTGTCACTGCCATCCTTTTCGCTTGGGTTGCCAGCATACTATGTCCTCGCTTTGTCTGAATCATCTTCCAACTTGTCTCGCTATGATGGTATTAGGTCAGTGGCTGACTCCCCATGTACCCCTCTCGCTCTCTTCGTCCAAGTACACCCACAACCGAACACAATATTTTATTCTGTGTTGTTTATTTTCATTAATAAATCATTTTGTTTGGCTTGGATCCACCTTCTCTATATCTAGATACGGAAACCAAGTTTATGCTGATGAGCTAGACTCTCTCTATGGAGATTCCCGAGCCAAAGGGTTAGGTTCTGAGGTACACACCTTCTAATCCTTCTCAATTTCAAATTTGGCTGCAAGATTTTCGGTAGCCTTATATATGCATATACCTGTATAAAAGAAATGATCCAATTTTGTATGTATTGTATTTTGAGCTGTCTTTCTCTTTTTAATACATTTCAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCACAGCAGGTAACTTTATTTTATGTATTTCTTGGTGGGTCTGATATACCTCTCAAGTCTTCTTAGCCCAATGATCATGAATTCAGTCACAGGACTCAGCTTAATATTTTTTGGTTAAAGAAAGTTATAATGTTTCAAGATTTCATCCAGACACGATATGCATCCACTCTTGTTCTTTATGTGAGGTTCATTTATTTTAGAAGTTTGGGATCTACAAGGCGTTTTATGTGTGTTCTATGTAACAGGTGAGAACCATTATAAGGAATAGCTTTAAGGAAGCACTGGATCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTAAGCATCTGTGTAGCTTTCCTTTTGCATTATTGCATGTTAGTGCCTGCAATAGTAATTGTATCTTTGTCTTTGACATTTGCAGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAGTATTTCATTCTTCTTATCGGCTACATTTCTGTCTCATACTTCTGATTTTAATTTATGTTAATGTTAACTAGACAATTAGTGTTAAGTTGAGGTTTCGACATGTGCTGTTGAACTTCAACTCTATTGAACTTAAGCTTGATTCATACATGAGTTCCTAAAGTTTATAGAGCTTTGAGCAGGCCACATAACTGCTGGTTTATGCCTTAGATAATAGATAATCAATTAAACAATCCAAAAAATATCTTAATTAATCAATAAGTGCAGGGTTGTTGCATTGTATTAGTACCTTAACATGTGTCGAGTATATATTATTGTGAGTTCTAGTTACTCCATAAAGGAATATCCTAGCGAATTAAGTCATCATTTAGCATAAGTTGTGTTGAATTATAGAAAATAGAGGCATGATGTTGAAACCATGCGTCTCAACTACACAGCAGAGTCAAATTTATATAGGCTAAGGACAATAATAACAACATAAATATAGGAGATATTTTTCTATTTACTTGATGTGATATGATACAATATGTCTATACAATAATCCTATACAATAAATACATATATGTGAATAATTTTTCAACAAGTTGCATAACTAGTTGTGCACCCAATGGTTTAGAGCTTCATCTTCTTTATGCATTATCTGTAATTTTATTTCTAGCTACTCATTTTACATGAGCATGCCGGGAATAATGCTTGCCTTTATTTATTGGTGGTTTCTCTTTTTACAGGTTAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGACCGACAGGGCTTCCTGTTGGCCTGCAAATGATTGGTGCAGCATTTAATGAGGTATTGAGTTTTCTTATCAACTACACTGAACTTCATGTTGACGAGGCTTCTCTATGCATTCTCTAGTTTTGCTTTGTTTTTTAGTCTACCTTTCTAAAGAGCATTAAGGAGGGAGATGGTTAAAACCTAAGGAAACCTTTGTTTGATGTCACCAAAATTATTCCCAGGATTGATTGTCCCTGGAATATCACACATGAAATTTGTTCCAAAGAAAAGTTTAAAAATTGTTGTTCGGTTGATGATTTGTTTTCCTGGGCATAGTTTCTTAAAGAAATGATATAATTATCAAAACACCCTTATCATGTAAAATAGACGTGGCACGCATGTTGATTTATAAACGTGGGAACTTGCAGTTACTTAGGAGGGTCTAAATGAGAGTTTATGATTTTTTATTGTTGTTCCCCTGGTACCTACGTAAGTTCATAAAGGAAAGAATATTGAAAGTGAAAAAGAAAACTCTGTAGATATTTTTCTCTTTACATTTTGCTTTAGATTGGGTTGGCTGCATTTTGAAAGTTCAAAACATACTGAACTACATGTGGACCAAGTGTACTTTTTTGTTCTATTTGCTAAACTTCCATGTTTATAGAAAAACTACAGATGTTTCTTGAGCTTACGTATTACACTGTTGGTAGGATTTTCTTTACTTCCAAGATTGAAAGTTGTCAAATGGTCAAAGTTAACTAACTTGGTCTTTCTGGGTAAAATTTTGGTGTTGTATATTTTAACCTAAAATAATGTGGGCATGTATATGCCTGAGTTCTACAAGAGATAATGTGCATGAGTATGTCTTTGACATTGAACAATAGAATCATCCTTTTTTCCTTGAAAAAAATAAAAATAGAATCATCCTTTTTGGCTTGGAATTTATTTGCAGGGAGAGCTGCTGAGAGTGGGACATATATTTGAGCAAACTCTTGAGAATTACAGATTTGTTCCACCAATCGGAGCTGATAGCGTTGAATAA
Protein sequence

>MS.gene68039.t1

MKMLSTLQTPRSTLSRFSLPSSTQATLTHPPPATAPPSQILTLRHSLLTNSLSATDLIQSHLTRLRLTEPHLRSFLHLPSDQSLIAQAHDLDRRISAGKEIGPLAGVLVAVKDNICTADMPSTGGSRILEGYRPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEASAYQVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSMRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFNSASSLESKPLKGLRIGLIRETIEDGVDAGVVSTIRDAASHFEALGCSVNEVSLPSFSLGLPAYYVLALSESSSNLSRYDGIRYGNQVYADELDSLYGDSRAKGLGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGPTGLPVGLQMIGAAFNEGELLRVGHIFEQTLENYRFVPPIGADSVE