Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68047.t1 | XP_003612141.1 | 99.7 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 6.50E-211 | 743 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68047.t1 | Q9SNY3 | 86.2 | 356 | 47 | 2 | 15 | 369 | 7 | 361 | 1.1e-179 | 630.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68047.t1 | G7JW51 | 99.7 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 4.7e-211 | 743.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68047 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene68047 | PPI |
| MS.gene96326 | MS.gene68047 | PPI |
| MS.gene012318 | MS.gene68047 | PPI |
| MS.gene68047 | MS.gene073336 | PPI |
| MS.gene68047 | MS.gene07262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68047.t1 | MTR_5g021760 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 768 |
| MS.gene68047.t1 | MTR_5g021770 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| MS.gene68047.t1 | MTR_4g120030 | 25.000 | 336 | 198 | 12 | 23 | 344 | 110 | 405 | 5.50e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68047.t1 | AT5G66280 | 85.754 | 358 | 49 | 2 | 13 | 369 | 5 | 361 | 0.0 | 650 |
| MS.gene68047.t1 | AT3G51160 | 85.511 | 352 | 50 | 1 | 18 | 369 | 23 | 373 | 0.0 | 647 |
| MS.gene68047.t1 | AT2G47650 | 24.490 | 343 | 202 | 13 | 23 | 346 | 118 | 422 | 1.46e-11 | 65.9 |
| MS.gene68047.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.27e-11 | 64.3 |
| MS.gene68047.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.27e-11 | 64.3 |
| MS.gene68047.t1 | AT2G47650 | 25.788 | 349 | 196 | 16 | 23 | 346 | 118 | 428 | 5.20e-11 | 64.3 |
Find 89 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGTTGATAATCTTAA+AGG | 0.194040 | 5.3:-12583293 | MS.gene68047:CDS |
| CGCGGTTTCGTTTGAGATTC+CGG | 0.236158 | 5.3:-12584283 | MS.gene68047:CDS |
| CTTCAGAGTAAGTTGTTTCT+TGG | 0.283233 | 5.3:-12583521 | MS.gene68047:CDS |
| AGTTTGATGAACGGCGAATT+AGG | 0.310934 | 5.3:+12584469 | None:intergenic |
| AGTAAAGCTAAGAAAGTTCT+TGG | 0.327387 | 5.3:-12583263 | MS.gene68047:CDS |
| CGTTTGTTGTAGACGGTGTT+GGG | 0.332541 | 5.3:+12584601 | None:intergenic |
| TCCGTCTTGGCCTGTGATTC+CGG | 0.355877 | 5.3:+12584539 | None:intergenic |
| TTGGTTATGTTGGATTGAAT+TGG | 0.372375 | 5.3:-12583355 | MS.gene68047:CDS |
| ACCTAAGCGCGTCAAGAGAT+TGG | 0.381294 | 5.3:-12583496 | MS.gene68047:CDS |
| CCTAAGCGCGTCAAGAGATT+GGG | 0.391497 | 5.3:-12583495 | MS.gene68047:CDS |
| GCTGGATCTTCCGAAATGTT+TGG | 0.393610 | 5.3:-12584159 | MS.gene68047:CDS |
| TGGAGTTGATCCAAACATTT+CGG | 0.395979 | 5.3:+12584149 | None:intergenic |
| GCGAGATTGTAAACTTCATC+AGG | 0.399238 | 5.3:+12584321 | None:intergenic |
| AACAAAGGCTACTCCGTTCA+TGG | 0.410210 | 5.3:-12584492 | MS.gene68047:CDS |
| TCAAGAGATTGGGGATTTGC+TGG | 0.414027 | 5.3:-12583485 | MS.gene68047:CDS |
| GAAGTTGCATTTGGTTATGT+TGG | 0.417505 | 5.3:-12583365 | MS.gene68047:CDS |
| ACTGCTGATGTTGTTGCTAC+TGG | 0.423498 | 5.3:-12584255 | MS.gene68047:CDS |
| GTGAATTACCGTGAAGCATA+TGG | 0.425833 | 5.3:-12583650 | MS.gene68047:CDS |
| CCGTTTGTTGTAGACGGTGT+TGG | 0.435086 | 5.3:+12584600 | None:intergenic |
| AAACGACTCCGTTTCATCCT+CGG | 0.435536 | 5.3:-12584113 | MS.gene68047:CDS |
| GTACCAATGCGCAGCAACTT+TGG | 0.435946 | 5.3:+12584074 | None:intergenic |
| AGAGGAAGCGTCGGAGAGAT+CGG | 0.436145 | 5.3:+12584371 | None:intergenic |
| AAGCTAAGAAAGTTCTTGGT+TGG | 0.448425 | 5.3:-12583259 | MS.gene68047:CDS |
| GTCGTTTCAGACTGCGGCGG+TGG | 0.449259 | 5.3:+12584129 | None:intergenic |
| ACGCTTCCTCTCTCCGTCGC+TGG | 0.449912 | 5.3:-12584359 | MS.gene68047:CDS |
| CCCAATCTCTTGACGCGCTT+AGG | 0.450001 | 5.3:+12583495 | None:intergenic |
| CCTCCAAAGTTGCTGCGCAT+TGG | 0.450320 | 5.3:-12584077 | MS.gene68047:intron |
| CCGTTAGGTATGATCCGTCT+TGG | 0.470101 | 5.3:+12584526 | None:intergenic |
| TGATGTTGAGATGGCTAAGA+AGG | 0.472951 | 5.3:-12583189 | MS.gene68047:CDS |
| GAGAAAGTGCTTGTTGATGC+TGG | 0.479756 | 5.3:-12583167 | MS.gene68047:CDS |
| CGATCTCATATCGATGCAAC+GGG | 0.483378 | 5.3:-12584207 | MS.gene68047:CDS |
| CACATTCGGTACTATCAAGC+TGG | 0.485404 | 5.3:-12584177 | MS.gene68047:CDS |
| AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.3:-12583249 | MS.gene68047:CDS |
| GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.3:-12583580 | MS.gene68047:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.3:-12583447 | MS.gene68047:CDS |
| TGTTGAGGAGGAATTCCGTT+AGG | 0.497000 | 5.3:+12584511 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.3:-12583219 | MS.gene68047:CDS |
| ACAACATCAGCAGTGTAATC+CGG | 0.499435 | 5.3:+12584264 | None:intergenic |
| AGGAAGATTACTAGAGCTGT+TGG | 0.503091 | 5.3:-12583560 | MS.gene68047:CDS |
| AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.3:+12583233 | None:intergenic |
| GCATTAATCACCGGAATCAC+AGG | 0.515624 | 5.3:-12584549 | MS.gene68047:CDS |
| AATGCGACTTTACGCGGTGG+AGG | 0.517057 | 5.3:+12584567 | None:intergenic |
| CCAACACCGTCTACAACAAA+CGG | 0.524963 | 5.3:-12584600 | MS.gene68047:CDS |
| TTAAGATTATCAACTTCAGT+AGG | 0.526518 | 5.3:+12583296 | None:intergenic |
| GCAACTTTGGAGGCGGCGTA+AGG | 0.533507 | 5.3:+12584087 | None:intergenic |
| TAAGGAGACCGAGGATGAAA+CGG | 0.539744 | 5.3:+12584105 | None:intergenic |
| GTCGAGCCAGCGACGGAGAG+AGG | 0.549312 | 5.3:+12584353 | None:intergenic |
| CTGTTGGAAGAATCAAGATC+GGG | 0.549995 | 5.3:-12583544 | MS.gene68047:CDS |
| CAACGGGAAGATCTCACATT+CGG | 0.556721 | 5.3:-12584191 | MS.gene68047:CDS |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.561578 | 5.3:+12584499 | None:intergenic |
| GTTGATGCTACAACAGGAAA+AGG | 0.563273 | 5.3:-12583441 | MS.gene68047:CDS |
| GCGACGGAGAGAGGAAGCGT+CGG | 0.564242 | 5.3:+12584362 | None:intergenic |
| ATCGGACAGCTTCAAGAAGA+CGG | 0.566546 | 5.3:+12584226 | None:intergenic |
| GTGATTAATGCGACTTTACG+CGG | 0.567516 | 5.3:+12584561 | None:intergenic |
| ATGCGCAGCAACTTTGGAGG+CGG | 0.573375 | 5.3:+12584080 | None:intergenic |
| CCAATGCGCAGCAACTTTGG+AGG | 0.573498 | 5.3:+12584077 | None:intergenic |
| GCTGTTGGAAGAATCAAGAT+CGG | 0.576069 | 5.3:-12583545 | MS.gene68047:CDS |
| GATTATCAACTTCAGTAGGA+CGG | 0.577125 | 5.3:+12583300 | None:intergenic |
| CCGATCTCATATCGATGCAA+CGG | 0.578172 | 5.3:-12584208 | MS.gene68047:CDS |
| GACTTTACGCGGTGGAGGAG+TGG | 0.582219 | 5.3:+12584572 | None:intergenic |
| GTGTCGCCGTTTGTTGTAGA+CGG | 0.589361 | 5.3:+12584594 | None:intergenic |
| GGTTGATAATGATGTTGAGA+TGG | 0.603211 | 5.3:-12583198 | MS.gene68047:CDS |
| CGCTGCACAGTCACATGTCG+CGG | 0.614190 | 5.3:-12584301 | MS.gene68047:CDS |
| GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.3:-12583463 | MS.gene68047:CDS |
| TGAGCTTTGTGAGCGTTGTG+TGG | 0.617112 | 5.3:+12584411 | None:intergenic |
| ACCGGAATCACAGGCCAAGA+CGG | 0.619372 | 5.3:-12584540 | MS.gene68047:CDS |
| GTTTGTTGTAGACGGTGTTG+GGG | 0.619696 | 5.3:+12584602 | None:intergenic |
| CGTAAAGTCGCATTAATCAC+CGG | 0.619954 | 5.3:-12584558 | MS.gene68047:CDS |
| GGCGACAGAGGATTCGCATA+CGG | 0.622538 | 5.3:-12583402 | MS.gene68047:CDS |
| GTGTGTTGAAGTTTGATGAA+CGG | 0.622841 | 5.3:+12584460 | None:intergenic |
| AGAAAGTGCTTGTTGATGCT+GGG | 0.623449 | 5.3:-12583166 | MS.gene68047:CDS |
| GAATAGTGTCGAGCCAGCGA+CGG | 0.624533 | 5.3:+12584346 | None:intergenic |
| ACGGAATTCCTCCTCAACAA+AGG | 0.626654 | 5.3:-12584507 | MS.gene68047:CDS |
| GAACGGAGTAGCCTTTGTTG+AGG | 0.627363 | 5.3:+12584496 | None:intergenic |
| TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.3:-12583351 | MS.gene68047:CDS |
| CCGTTGCATCGATATGAGAT+CGG | 0.642154 | 5.3:+12584208 | None:intergenic |
| CTAAGCGCGTCAAGAGATTG+GGG | 0.642293 | 5.3:-12583494 | MS.gene68047:CDS |
| AACGGAGTCGTTTCAGACTG+CGG | 0.644350 | 5.3:+12584123 | None:intergenic |
| ACGGCGAATTAGGCCATGAA+CGG | 0.650770 | 5.3:+12584479 | None:intergenic |
| CGAGATTGTAAACTTCATCA+GGG | 0.657924 | 5.3:+12584322 | None:intergenic |
| CCAAGACGGATCATACCTAA+CGG | 0.664395 | 5.3:-12584526 | MS.gene68047:CDS |
| GACAGAGGATTCGCATACGG+TGG | 0.672210 | 5.3:-12583399 | MS.gene68047:CDS |
| AATCATGAGTCACCACGTAG+AGG | 0.675384 | 5.3:-12583599 | MS.gene68047:CDS |
| ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.3:+12583587 | None:intergenic |
| TGATTATGTTGTGGCGACAG+AGG | 0.688973 | 5.3:-12583414 | MS.gene68047:CDS |
| GAGGCGGCGTAAGGAGACCG+AGG | 0.699155 | 5.3:+12584096 | None:intergenic |
| ATTAATGCGACTTTACGCGG+TGG | 0.709409 | 5.3:+12584564 | None:intergenic |
| AAAGGCTGATGATTATGTTG+TGG | 0.716548 | 5.3:-12583423 | MS.gene68047:CDS |
| GGAGTCGTTTCAGACTGCGG+CGG | 0.740688 | 5.3:+12584126 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAACTTTTATGGATTTAAT+AGG | - | chr5.3:12584084-12584103 | MS.gene68047:CDS | 20.0% |
| !!! | TGATATGTAACTAACTTTTA+TGG | - | chr5.3:12584074-12584093 | MS.gene68047:intron | 20.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.3:12584470-12584489 | None:intergenic | 25.0% |
| ! | TTACTACATATAAGTATAGC+TGG | + | chr5.3:12583799-12583818 | None:intergenic | 25.0% |
| !! | TATGGAATTTTTGCTTGTAA+CGG | - | chr5.3:12584131-12584150 | MS.gene68047:CDS | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.3:12584470-12584489 | MS.gene68047:CDS | 25.0% |
| !!! | AGTTTTTCGACATATCTAAT+AGG | - | chr5.3:12584026-12584045 | MS.gene68047:intron | 25.0% |
| AGTAAAGCTAAGAAAGTTCT+TGG | - | chr5.3:12584500-12584519 | MS.gene68047:CDS | 30.0% | |
| CAAAAATTCCATATGCTTCA+CGG | + | chr5.3:12584124-12584143 | None:intergenic | 30.0% | |
| TTATGTTGGATTGAATTGGA+AGG | - | chr5.3:12584412-12584431 | MS.gene68047:CDS | 30.0% | |
| TTGGTTATGTTGGATTGAAT+TGG | - | chr5.3:12584408-12584427 | MS.gene68047:CDS | 30.0% | |
| ! | ACTAACTTTTACATCTCGAA+TGG | - | chr5.3:12583927-12583946 | MS.gene68047:intron | 30.0% |
| ! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.3:12583928-12583947 | MS.gene68047:intron | 30.0% |
| ! | CTAACTTTTACATCTCGAAT+GGG | - | chr5.3:12583928-12583947 | MS.gene68047:intron | 30.0% |
| AAAGGCTGATGATTATGTTG+TGG | - | chr5.3:12584340-12584359 | MS.gene68047:CDS | 35.0% | |
| AAGCTAAGAAAGTTCTTGGT+TGG | - | chr5.3:12584504-12584523 | MS.gene68047:CDS | 35.0% | |
| AGCTCTTCAAAACTAACCTT+AGG | + | chr5.3:12584533-12584552 | None:intergenic | 35.0% | |
| CGAGATTGTAAACTTCATCA+GGG | + | chr5.3:12583444-12583463 | None:intergenic | 35.0% | |
| GAAGTTGCATTTGGTTATGT+TGG | - | chr5.3:12584398-12584417 | MS.gene68047:CDS | 35.0% | |
| GATTATCAACTTCAGTAGGA+CGG | + | chr5.3:12584466-12584485 | None:intergenic | 35.0% | |
| GTGTGTTGAAGTTTGATGAA+CGG | + | chr5.3:12583306-12583325 | None:intergenic | 35.0% | |
| ! | TGGAGTTGATCCAAACATTT+CGG | + | chr5.3:12583617-12583636 | None:intergenic | 35.0% |
| !! | CTTCAGAGTAAGTTGTTTCT+TGG | - | chr5.3:12584242-12584261 | MS.gene68047:CDS | 35.0% |
| !! | GAGTTTTTGGAAGTTGCATT+TGG | - | chr5.3:12584389-12584408 | MS.gene68047:CDS | 35.0% |
| !! | GGTTGATAATGATGTTGAGA+TGG | - | chr5.3:12584565-12584584 | MS.gene68047:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.3:12584544-12584563 | MS.gene68047:CDS | 35.0% |
| ACAACATCAGCAGTGTAATC+CGG | + | chr5.3:12583502-12583521 | None:intergenic | 40.0% | |
| AGGAAGATTACTAGAGCTGT+TGG | - | chr5.3:12584203-12584222 | MS.gene68047:CDS | 40.0% | |
| AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.3:12584514-12584533 | MS.gene68047:CDS | 40.0% | |
| AGTTTGATGAACGGCGAATT+AGG | + | chr5.3:12583297-12583316 | None:intergenic | 40.0% | |
| CGTAAAGTCGCATTAATCAC+CGG | - | chr5.3:12583205-12583224 | MS.gene68047:CDS | 40.0% | |
| CTGTTGGAAGAATCAAGATC+GGG | - | chr5.3:12584219-12584238 | MS.gene68047:CDS | 40.0% | |
| GAGGAGAGAATTTCGTTACA+AGG | - | chr5.3:12584183-12584202 | MS.gene68047:CDS | 40.0% | |
| GCGAGATTGTAAACTTCATC+AGG | + | chr5.3:12583445-12583464 | None:intergenic | 40.0% | |
| GCTGTTGGAAGAATCAAGAT+CGG | - | chr5.3:12584218-12584237 | MS.gene68047:CDS | 40.0% | |
| GTGAATTACCGTGAAGCATA+TGG | - | chr5.3:12584113-12584132 | MS.gene68047:CDS | 40.0% | |
| GTGATTAATGCGACTTTACG+CGG | + | chr5.3:12583205-12583224 | None:intergenic | 40.0% | |
| GTGATTATGTTGAAGCGATG+TGG | - | chr5.3:12584300-12584319 | MS.gene68047:CDS | 40.0% | |
| GTTGATGCTACAACAGGAAA+AGG | - | chr5.3:12584322-12584341 | MS.gene68047:CDS | 40.0% | |
| TGATGTTGAGATGGCTAAGA+AGG | - | chr5.3:12584574-12584593 | MS.gene68047:CDS | 40.0% | |
| !! | AGAAAGTGCTTGTTGATGCT+GGG | - | chr5.3:12584597-12584616 | MS.gene68047:CDS | 40.0% |
| AAACGACTCCGTTTCATCCT+CGG | - | chr5.3:12583650-12583669 | MS.gene68047:CDS | 45.0% | |
| AACAAAGGCTACTCCGTTCA+TGG | - | chr5.3:12583271-12583290 | MS.gene68047:CDS | 45.0% | |
| AATCATGAGTCACCACGTAG+AGG | - | chr5.3:12584164-12584183 | MS.gene68047:CDS | 45.0% | |
| ACGAAATTCTCTCCTCTACG+TGG | + | chr5.3:12584179-12584198 | None:intergenic | 45.0% | |
| ACGGAATTCCTCCTCAACAA+AGG | - | chr5.3:12583256-12583275 | MS.gene68047:CDS | 45.0% | |
| ACTGCTGATGTTGTTGCTAC+TGG | - | chr5.3:12583508-12583527 | MS.gene68047:CDS | 45.0% | |
| ATCGGACAGCTTCAAGAAGA+CGG | + | chr5.3:12583540-12583559 | None:intergenic | 45.0% | |
| ATTAATGCGACTTTACGCGG+TGG | + | chr5.3:12583202-12583221 | None:intergenic | 45.0% | |
| CAACGGGAAGATCTCACATT+CGG | - | chr5.3:12583572-12583591 | MS.gene68047:CDS | 45.0% | |
| CACATTCGGTACTATCAAGC+TGG | - | chr5.3:12583586-12583605 | MS.gene68047:CDS | 45.0% | |
| CCAACACCGTCTACAACAAA+CGG | - | chr5.3:12583163-12583182 | MS.gene68047:CDS | 45.0% | |
| CCAAGACGGATCATACCTAA+CGG | - | chr5.3:12583237-12583256 | MS.gene68047:CDS | 45.0% | |
| CCGATCTCATATCGATGCAA+CGG | - | chr5.3:12583555-12583574 | MS.gene68047:CDS | 45.0% | |
| CGATCTCATATCGATGCAAC+GGG | - | chr5.3:12583556-12583575 | MS.gene68047:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+AGG | - | chr5.3:12583214-12583233 | MS.gene68047:CDS | 45.0% | |
| GCTGGATCTTCCGAAATGTT+TGG | - | chr5.3:12583604-12583623 | MS.gene68047:CDS | 45.0% | |
| TAAGGAGACCGAGGATGAAA+CGG | + | chr5.3:12583661-12583680 | None:intergenic | 45.0% | |
| TCAAGAGATTGGGGATTTGC+TGG | - | chr5.3:12584278-12584297 | MS.gene68047:CDS | 45.0% | |
| TGATTATGTTGTGGCGACAG+AGG | - | chr5.3:12584349-12584368 | MS.gene68047:CDS | 45.0% | |
| TGTTGAGGAGGAATTCCGTT+AGG | + | chr5.3:12583255-12583274 | None:intergenic | 45.0% | |
| ! | CCGTTGCATCGATATGAGAT+CGG | + | chr5.3:12583558-12583577 | None:intergenic | 45.0% |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.3:12584316-12584335 | MS.gene68047:CDS | 45.0% |
| ! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.3:12584376-12584395 | MS.gene68047:CDS | 45.0% |
| !! | CGTTTGTTGTAGACGGTGTT+GGG | + | chr5.3:12583165-12583184 | None:intergenic | 45.0% |
| !! | GAGAAAGTGCTTGTTGATGC+TGG | - | chr5.3:12584596-12584615 | MS.gene68047:CDS | 45.0% |
| !! | GTTTGTTGTAGACGGTGTTG+GGG | + | chr5.3:12583164-12583183 | None:intergenic | 45.0% |
| AACGGAGTCGTTTCAGACTG+CGG | + | chr5.3:12583643-12583662 | None:intergenic | 50.0% | |
| ACCTAAGCGCGTCAAGAGAT+TGG | - | chr5.3:12584267-12584286 | MS.gene68047:CDS | 50.0% | |
| ACGGCGAATTAGGCCATGAA+CGG | + | chr5.3:12583287-12583306 | None:intergenic | 50.0% | |
| CCGTTAGGTATGATCCGTCT+TGG | + | chr5.3:12583240-12583259 | None:intergenic | 50.0% | |
| CCTAAGCGCGTCAAGAGATT+GGG | - | chr5.3:12584268-12584287 | MS.gene68047:CDS | 50.0% | |
| CTAAGCGCGTCAAGAGATTG+GGG | - | chr5.3:12584269-12584288 | MS.gene68047:CDS | 50.0% | |
| GAACGGAGTAGCCTTTGTTG+AGG | + | chr5.3:12583270-12583289 | None:intergenic | 50.0% | |
| GTACCAATGCGCAGCAACTT+TGG | + | chr5.3:12583692-12583711 | None:intergenic | 50.0% | |
| ! | CGCGGTTTCGTTTGAGATTC+CGG | - | chr5.3:12583480-12583499 | MS.gene68047:CDS | 50.0% |
| ! | TGAGCTTTGTGAGCGTTGTG+TGG | + | chr5.3:12583355-12583374 | None:intergenic | 50.0% |
| !! | CCGTTTGTTGTAGACGGTGT+TGG | + | chr5.3:12583166-12583185 | None:intergenic | 50.0% |
| !! | GTGTCGCCGTTTGTTGTAGA+CGG | + | chr5.3:12583172-12583191 | None:intergenic | 50.0% |
| AATGCGACTTTACGCGGTGG+AGG | + | chr5.3:12583199-12583218 | None:intergenic | 55.0% | |
| ACCGGAATCACAGGCCAAGA+CGG | - | chr5.3:12583223-12583242 | MS.gene68047:CDS | 55.0% | |
| CCAATGCGCAGCAACTTTGG+AGG | + | chr5.3:12583689-12583708 | None:intergenic | 55.0% | |
| CCCAATCTCTTGACGCGCTT+AGG | + | chr5.3:12584271-12584290 | None:intergenic | 55.0% | |
| CCTCCAAAGTTGCTGCGCAT+TGG | - | chr5.3:12583686-12583705 | MS.gene68047:intron | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.3:12583267-12583286 | None:intergenic | 55.0% | |
| GACAGAGGATTCGCATACGG+TGG | - | chr5.3:12584364-12584383 | MS.gene68047:CDS | 55.0% | |
| GGCGACAGAGGATTCGCATA+CGG | - | chr5.3:12584361-12584380 | MS.gene68047:CDS | 55.0% | |
| TCCGTCTTGGCCTGTGATTC+CGG | + | chr5.3:12583227-12583246 | None:intergenic | 55.0% | |
| ! | ATGCGCAGCAACTTTGGAGG+CGG | + | chr5.3:12583686-12583705 | None:intergenic | 55.0% |
| ! | GAATAGTGTCGAGCCAGCGA+CGG | + | chr5.3:12583420-12583439 | None:intergenic | 55.0% |
| !! | AGAGGAAGCGTCGGAGAGAT+CGG | + | chr5.3:12583395-12583414 | None:intergenic | 55.0% |
| CGCTGCACAGTCACATGTCG+CGG | - | chr5.3:12583462-12583481 | MS.gene68047:CDS | 60.0% | |
| GACTTTACGCGGTGGAGGAG+TGG | + | chr5.3:12583194-12583213 | None:intergenic | 60.0% | |
| GGAGTCGTTTCAGACTGCGG+CGG | + | chr5.3:12583640-12583659 | None:intergenic | 60.0% | |
| ! | GCAACTTTGGAGGCGGCGTA+AGG | + | chr5.3:12583679-12583698 | None:intergenic | 60.0% |
| ACGCTTCCTCTCTCCGTCGC+TGG | - | chr5.3:12583404-12583423 | MS.gene68047:CDS | 65.0% | |
| GTCGTTTCAGACTGCGGCGG+TGG | + | chr5.3:12583637-12583656 | None:intergenic | 65.0% | |
| ! | GCGACGGAGAGAGGAAGCGT+CGG | + | chr5.3:12583404-12583423 | None:intergenic | 65.0% |
| GAGGCGGCGTAAGGAGACCG+AGG | + | chr5.3:12583670-12583689 | None:intergenic | 70.0% | |
| GTCGAGCCAGCGACGGAGAG+AGG | + | chr5.3:12583413-12583432 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12583139 | 12584646 | 12583139 | ID=MS.gene68047 |
| chr5.3 | mRNA | 12583139 | 12584646 | 12583139 | ID=MS.gene68047.t1;Parent=MS.gene68047 |
| chr5.3 | exon | 12584078 | 12584646 | 12584078 | ID=MS.gene68047.t1.exon1;Parent=MS.gene68047.t1 |
| chr5.3 | CDS | 12584078 | 12584646 | 12584078 | ID=cds.MS.gene68047.t1;Parent=MS.gene68047.t1 |
| chr5.3 | exon | 12583139 | 12583679 | 12583139 | ID=MS.gene68047.t1.exon2;Parent=MS.gene68047.t1 |
| chr5.3 | CDS | 12583139 | 12583679 | 12583139 | ID=cds.MS.gene68047.t1;Parent=MS.gene68047.t1 |
| Gene Sequence |
| Protein sequence |
