Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68048.t1 | XP_003612144.1 | 97 | 369 | 11 | 0 | 1 | 369 | 1 | 369 | 5.70E-207 | 729.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68048.t1 | Q9SNY3 | 84.3 | 356 | 54 | 2 | 15 | 369 | 7 | 361 | 2.0e-176 | 619.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68048.t1 | A0A072UDQ2 | 97.0 | 369 | 11 | 0 | 1 | 369 | 1 | 369 | 4.1e-207 | 729.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68048 | MS.gene96326 | PPI |
| MS.gene68048 | MS.gene07262 | PPI |
| MS.gene68048 | MS.gene20834 | PPI |
| MS.gene68048 | MS.gene073336 | PPI |
| MS.gene20783 | MS.gene68048 | PPI |
| MS.gene68048 | MS.gene012318 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68048.t1 | MTR_5g021770 | 97.019 | 369 | 11 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| MS.gene68048.t1 | MTR_5g021760 | 96.477 | 369 | 13 | 0 | 1 | 369 | 1 | 369 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68048.t1 | AT5G66280 | 83.799 | 358 | 56 | 2 | 13 | 369 | 5 | 361 | 0.0 | 639 |
| MS.gene68048.t1 | AT3G51160 | 84.659 | 352 | 53 | 1 | 18 | 369 | 23 | 373 | 0.0 | 638 |
Find 91 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGACGGTGTTGGGGTTT+TGG | 0.179674 | 5.3:+12599400 | None:intergenic |
| ACTGAAGTTGATAATCTTAA+AGG | 0.192272 | 5.3:-12598223 | MS.gene68048:CDS |
| CTTCAGAGTAAGTTGTTTCT+TGG | 0.283233 | 5.3:-12598451 | MS.gene68048:CDS |
| AGTAAAGCTAAGAAAGTTCT+TGG | 0.327387 | 5.3:-12598193 | MS.gene68048:CDS |
| CGTTTGTTGTTGACGGTGTT+GGG | 0.336432 | 5.3:+12599393 | None:intergenic |
| GCGAGGTTGTAAACTTCGTC+TGG | 0.341588 | 5.3:+12599113 | None:intergenic |
| TCCATCTTGGCCTGTGATTC+CGG | 0.349616 | 5.3:+12599331 | None:intergenic |
| AGTTTGACGAACGGCGAATT+AGG | 0.352603 | 5.3:+12599261 | None:intergenic |
| ACCTAAGTGCGTCAAGAGAT+TGG | 0.381294 | 5.3:-12598426 | MS.gene68048:CDS |
| CGGAGTTGATCCAAACATTT+CGG | 0.386234 | 5.3:+12598941 | None:intergenic |
| CCTAAGTGCGTCAAGAGATT+GGG | 0.391497 | 5.3:-12598425 | MS.gene68048:CDS |
| CGATCTCATATTGATGCAAC+AGG | 0.391938 | 5.3:-12598999 | MS.gene68048:CDS |
| GCTGGATCTTCCGAAATGTT+TGG | 0.393610 | 5.3:-12598951 | MS.gene68048:CDS |
| ACAACATCGGCAGTGTAATC+AGG | 0.400097 | 5.3:+12599056 | None:intergenic |
| TTAGTTATGCTGGATTGAAT+TGG | 0.406465 | 5.3:-12598285 | MS.gene68048:CDS |
| CCGTTAGGTATGATCCATCT+TGG | 0.422550 | 5.3:+12599318 | None:intergenic |
| AGGAAGATTACTAGAGTTGT+TGG | 0.423133 | 5.3:-12598490 | MS.gene68048:CDS |
| GTGAATTACCGTGAAGCATA+TGG | 0.425833 | 5.3:-12598580 | MS.gene68048:CDS |
| GTACCAATGCGCAGCGACTT+TGG | 0.427191 | 5.3:+12598866 | None:intergenic |
| AAACGACTCCGTTTCATCCT+CGG | 0.435536 | 5.3:-12598905 | MS.gene68048:CDS |
| TGATATTGAGATGGCTAAGA+AGG | 0.440336 | 5.3:-12598119 | MS.gene68048:CDS |
| ACGCTTCCTCTCTCCGCCGC+TGG | 0.440436 | 5.3:-12599151 | MS.gene68048:CDS |
| AAGCTAAGAAAGTTCTTGGT+TGG | 0.448425 | 5.3:-12598189 | MS.gene68048:CDS |
| CCGTTTGTTGTTGACGGTGT+TGG | 0.453323 | 5.3:+12599392 | None:intergenic |
| TCAAGAGATTGGGGATTTGC+TGG | 0.457247 | 5.3:-12598415 | MS.gene68048:CDS |
| GTCGTTTCAGACTGCGGCGG+CGG | 0.457791 | 5.3:+12598921 | None:intergenic |
| GAGAAAGTTCTTGTTGATGC+TGG | 0.458204 | 5.3:-12598097 | MS.gene68048:CDS |
| CCTCCAAAGTCGCTGCGCAT+TGG | 0.461567 | 5.3:-12598869 | MS.gene68048:intron |
| AGAGGAAGCGTCAGAGAGAT+CGG | 0.476997 | 5.3:+12599163 | None:intergenic |
| AATGCGACTTTCCGCGGTGC+AGG | 0.477453 | 5.3:+12599359 | None:intergenic |
| CACATTCGGTACTATCAAGC+TGG | 0.485404 | 5.3:-12598969 | MS.gene68048:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.3:-12598377 | MS.gene68048:CDS |
| GTGTCGCCGTTTGTTGTTGA+CGG | 0.494472 | 5.3:+12599386 | None:intergenic |
| GCGACTTTGGAGGCAGCATA+AGG | 0.494561 | 5.3:+12598879 | None:intergenic |
| TGTTGAGGAGGAATTCCGTT+AGG | 0.497000 | 5.3:+12599303 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.3:-12598149 | MS.gene68048:CDS |
| AGCTCTTCAAAACTAACGTT+AGG | 0.504150 | 5.3:+12598163 | None:intergenic |
| CCCAATCTCTTGACGCACTT+AGG | 0.504911 | 5.3:+12598425 | None:intergenic |
| GGCGACAGAGGTTTCGCATA+CGG | 0.505764 | 5.3:-12598332 | MS.gene68048:CDS |
| CCAACACCGTCAACAACAAA+CGG | 0.512361 | 5.3:-12599392 | MS.gene68048:CDS |
| GCATTAATCACCGGAATCAC+AGG | 0.515624 | 5.3:-12599341 | MS.gene68048:CDS |
| GACTTTCCGCGGTGCAGGAG+TGG | 0.519293 | 5.3:+12599364 | None:intergenic |
| TTGTTGGAAGAATCAAGATC+GGG | 0.530932 | 5.3:-12598474 | MS.gene68048:CDS |
| AGAAAGTTCTTGTTGATGCT+GGG | 0.531127 | 5.3:-12598096 | MS.gene68048:CDS |
| ACCGGAATCACAGGCCAAGA+TGG | 0.533513 | 5.3:-12599332 | MS.gene68048:CDS |
| TTAAGATTATCAACTTCAGT+AGG | 0.538937 | 5.3:+12598226 | None:intergenic |
| TAAGGAGACCGAGGATGAAA+CGG | 0.541837 | 5.3:+12598897 | None:intergenic |
| GTCGAGCCAGCGGCGGAGAG+AGG | 0.550378 | 5.3:+12599145 | None:intergenic |
| CAACAGGAAGATCTCACATT+CGG | 0.558076 | 5.3:-12598983 | MS.gene68048:CDS |
| GTGATTAATGCGACTTTCCG+CGG | 0.562066 | 5.3:+12599353 | None:intergenic |
| GTTGATGCTACAACAGGAAA+AGG | 0.563273 | 5.3:-12598371 | MS.gene68048:CDS |
| AGCACCGGTAGCTACAACAT+CGG | 0.565503 | 5.3:+12599043 | None:intergenic |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.568302 | 5.3:+12599291 | None:intergenic |
| ATCGGATGGCTTCAAGAAGA+CGG | 0.568527 | 5.3:+12599018 | None:intergenic |
| GTTGTTGGAAGAATCAAGAT+CGG | 0.578552 | 5.3:-12598475 | MS.gene68048:CDS |
| CCAATGCGCAGCGACTTTGG+AGG | 0.582640 | 5.3:+12598869 | None:intergenic |
| CTGTTGCATCAATATGAGAT+CGG | 0.582679 | 5.3:+12599000 | None:intergenic |
| TGCATCAATATGAGATCGGA+TGG | 0.589712 | 5.3:+12599004 | None:intergenic |
| CGAGGTTGTAAACTTCGTCT+GGG | 0.591873 | 5.3:+12599114 | None:intergenic |
| ACGAACGGCGAATTAGGCCG+TGG | 0.595994 | 5.3:+12599267 | None:intergenic |
| TTCAAGAAGACGGAGAGCAC+CGG | 0.600537 | 5.3:+12599028 | None:intergenic |
| TTATGCTGGATTGAATTGGA+AGG | 0.603322 | 5.3:-12598281 | MS.gene68048:CDS |
| GGACGGAGTAGCCTTTGTTG+AGG | 0.608416 | 5.3:+12599288 | None:intergenic |
| CGGAAAGTCGCATTAATCAC+CGG | 0.613778 | 5.3:-12599350 | MS.gene68048:CDS |
| CTAAGTGCGTCAAGAGATTG+GGG | 0.613784 | 5.3:-12598424 | MS.gene68048:CDS |
| ACGGCGAATTAGGCCGTGGA+CGG | 0.616647 | 5.3:+12599271 | None:intergenic |
| GTGTGTTGAAGTTTGACGAA+CGG | 0.622272 | 5.3:+12599252 | None:intergenic |
| GTTTGTTGTTGACGGTGTTG+GGG | 0.624826 | 5.3:+12599394 | None:intergenic |
| ACTGCCGATGTTGTAGCTAC+CGG | 0.624876 | 5.3:-12599047 | MS.gene68048:CDS |
| ACGGAATTCCTCCTCAACAA+AGG | 0.626654 | 5.3:-12599299 | MS.gene68048:CDS |
| AACAAAGGCTACTCCGTCCA+CGG | 0.626974 | 5.3:-12599284 | MS.gene68048:CDS |
| GGAGGATAGTGTCGAGCCAG+CGG | 0.629146 | 5.3:+12599135 | None:intergenic |
| GGTTGATAATGATATTGAGA+TGG | 0.632801 | 5.3:-12598128 | MS.gene68048:CDS |
| GGATAGTGTCGAGCCAGCGG+CGG | 0.633293 | 5.3:+12599138 | None:intergenic |
| AACGGAGTCGTTTCAGACTG+CGG | 0.644350 | 5.3:+12598915 | None:intergenic |
| CCAAGATGGATCATACCTAA+CGG | 0.649680 | 5.3:-12599318 | MS.gene68048:CDS |
| TGAGCTTTGTGAGCCTCGTG+TGG | 0.656361 | 5.3:+12599203 | None:intergenic |
| AACCGCGACGTGAGACTGTG+CGG | 0.665940 | 5.3:+12599091 | None:intergenic |
| CGCCGCACAGTCTCACGTCG+CGG | 0.668155 | 5.3:-12599093 | MS.gene68048:CDS |
| GGTTGTAAACTTCGTCTGGG+AGG | 0.669211 | 5.3:+12599117 | None:intergenic |
| TGATTATGTTGTGGCGACAG+AGG | 0.669418 | 5.3:-12598344 | MS.gene68048:CDS |
| GACAGAGGTTTCGCATACGG+TGG | 0.669541 | 5.3:-12598329 | MS.gene68048:CDS |
| AATCATGAATCACCACGTAG+AGG | 0.676462 | 5.3:-12598529 | MS.gene68048:CDS |
| CATCTACATCGATCCACACG+AGG | 0.679190 | 5.3:-12599216 | MS.gene68048:CDS |
| ACAAAATTCTCTCCTCTACG+TGG | 0.685852 | 5.3:+12598517 | None:intergenic |
| CGACGTGAGACTGTGCGGCG+AGG | 0.686982 | 5.3:+12599096 | None:intergenic |
| GAGGCAGCATAAGGAGACCG+AGG | 0.697186 | 5.3:+12598888 | None:intergenic |
| AAAGGCTGATGATTATGTTG+TGG | 0.716548 | 5.3:-12598353 | MS.gene68048:CDS |
| GTGATTATGTAGAAGCGATG+TGG | 0.718116 | 5.3:-12598393 | MS.gene68048:CDS |
| GGAGTCGTTTCAGACTGCGG+CGG | 0.719009 | 5.3:+12598918 | None:intergenic |
| GCGACACCACTCCTGCACCG+CGG | 0.734115 | 5.3:-12599370 | MS.gene68048:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATAAATTAATGAAA+TGG | - | chr5.3:12598676-12598695 | MS.gene68048:intron | 15.0% |
| ! | CTAACATTTACATCAGAAAT+AGG | - | chr5.3:12598831-12598850 | MS.gene68048:intron | 25.0% |
| ! | CTAACATTTACATCTCTAAT+AGG | - | chr5.3:12598721-12598740 | MS.gene68048:intron | 25.0% |
| ! | GAGATGTAAATGTTAGTTAT+CGG | + | chr5.3:12598717-12598736 | None:intergenic | 25.0% |
| ! | TCTAATACTGTGAAAAAACA+AGG | - | chr5.3:12598791-12598810 | MS.gene68048:intron | 25.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.3:12599262-12599281 | None:intergenic | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.3:12599262-12599281 | MS.gene68048:CDS | 25.0% |
| AGTAAAGCTAAGAAAGTTCT+TGG | - | chr5.3:12599292-12599311 | MS.gene68048:CDS | 30.0% | |
| CAAAAATTCCATATGCTTCA+CGG | + | chr5.3:12598916-12598935 | None:intergenic | 30.0% | |
| TTAGTTATGCTGGATTGAAT+TGG | - | chr5.3:12599200-12599219 | MS.gene68048:CDS | 30.0% | |
| ! | TATGGAATTTTTGCTTGCAA+CGG | - | chr5.3:12598923-12598942 | MS.gene68048:CDS | 30.0% |
| !! | CTTACTTTTACATCTCGAAT+AGG | - | chr5.3:12598876-12598895 | MS.gene68048:CDS | 30.0% |
| !! | GGTTGATAATGATATTGAGA+TGG | - | chr5.3:12599357-12599376 | MS.gene68048:CDS | 30.0% |
| AAAGGCTGATGATTATGTTG+TGG | - | chr5.3:12599132-12599151 | MS.gene68048:CDS | 35.0% | |
| AAGCTAAGAAAGTTCTTGGT+TGG | - | chr5.3:12599296-12599315 | MS.gene68048:CDS | 35.0% | |
| AGAAAGTTCTTGTTGATGCT+GGG | - | chr5.3:12599389-12599408 | MS.gene68048:CDS | 35.0% | |
| AGCTCTTCAAAACTAACGTT+AGG | + | chr5.3:12599325-12599344 | None:intergenic | 35.0% | |
| AGGAAGATTACTAGAGTTGT+TGG | - | chr5.3:12598995-12599014 | MS.gene68048:CDS | 35.0% | |
| CTGTTGCATCAATATGAGAT+CGG | + | chr5.3:12598488-12598507 | None:intergenic | 35.0% | |
| GTTGTTGGAAGAATCAAGAT+CGG | - | chr5.3:12599010-12599029 | MS.gene68048:CDS | 35.0% | |
| TGATATTGAGATGGCTAAGA+AGG | - | chr5.3:12599366-12599385 | MS.gene68048:CDS | 35.0% | |
| TTATGCTGGATTGAATTGGA+AGG | - | chr5.3:12599204-12599223 | MS.gene68048:CDS | 35.0% | |
| TTGTTGGAAGAATCAAGATC+GGG | - | chr5.3:12599011-12599030 | MS.gene68048:CDS | 35.0% | |
| ! | GAGGAGAGAATTTTGTTACA+AGG | - | chr5.3:12598975-12598994 | MS.gene68048:CDS | 35.0% |
| !! | CTTCAGAGTAAGTTGTTTCT+TGG | - | chr5.3:12599034-12599053 | MS.gene68048:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.3:12599336-12599355 | MS.gene68048:CDS | 35.0% |
| !!! | GAAGTTGCTTTTAGTTATGC+TGG | - | chr5.3:12599190-12599209 | MS.gene68048:CDS | 35.0% |
| AATCATGAATCACCACGTAG+AGG | - | chr5.3:12598956-12598975 | MS.gene68048:CDS | 40.0% | |
| ACAAAATTCTCTCCTCTACG+TGG | + | chr5.3:12598971-12598990 | None:intergenic | 40.0% | |
| CAACAGGAAGATCTCACATT+CGG | - | chr5.3:12598502-12598521 | MS.gene68048:CDS | 40.0% | |
| CCAAGATGGATCATACCTAA+CGG | - | chr5.3:12598167-12598186 | MS.gene68048:CDS | 40.0% | |
| CGATCTCATATTGATGCAAC+AGG | - | chr5.3:12598486-12598505 | MS.gene68048:CDS | 40.0% | |
| GAGAAAGTTCTTGTTGATGC+TGG | - | chr5.3:12599388-12599407 | MS.gene68048:CDS | 40.0% | |
| GTGAATTACCGTGAAGCATA+TGG | - | chr5.3:12598905-12598924 | MS.gene68048:CDS | 40.0% | |
| GTGATTATGTAGAAGCGATG+TGG | - | chr5.3:12599092-12599111 | MS.gene68048:CDS | 40.0% | |
| GTGTGTTGAAGTTTGACGAA+CGG | + | chr5.3:12598236-12598255 | None:intergenic | 40.0% | |
| GTTGATGCTACAACAGGAAA+AGG | - | chr5.3:12599114-12599133 | MS.gene68048:CDS | 40.0% | |
| TGCATCAATATGAGATCGGA+TGG | + | chr5.3:12598484-12598503 | None:intergenic | 40.0% | |
| ! | CGGAGTTGATCCAAACATTT+CGG | + | chr5.3:12598547-12598566 | None:intergenic | 40.0% |
| AAACGACTCCGTTTCATCCT+CGG | - | chr5.3:12598580-12598599 | MS.gene68048:CDS | 45.0% | |
| ACAACATCGGCAGTGTAATC+AGG | + | chr5.3:12598432-12598451 | None:intergenic | 45.0% | |
| ACCTAAGTGCGTCAAGAGAT+TGG | - | chr5.3:12599059-12599078 | MS.gene68048:CDS | 45.0% | |
| ACGGAATTCCTCCTCAACAA+AGG | - | chr5.3:12598186-12598205 | MS.gene68048:CDS | 45.0% | |
| AGTTTGACGAACGGCGAATT+AGG | + | chr5.3:12598227-12598246 | None:intergenic | 45.0% | |
| ATCGGATGGCTTCAAGAAGA+CGG | + | chr5.3:12598470-12598489 | None:intergenic | 45.0% | |
| CACATTCGGTACTATCAAGC+TGG | - | chr5.3:12598516-12598535 | MS.gene68048:CDS | 45.0% | |
| CCAACACCGTCAACAACAAA+CGG | - | chr5.3:12598093-12598112 | MS.gene68048:CDS | 45.0% | |
| CCGTTAGGTATGATCCATCT+TGG | + | chr5.3:12598170-12598189 | None:intergenic | 45.0% | |
| CCTAAGTGCGTCAAGAGATT+GGG | - | chr5.3:12599060-12599079 | MS.gene68048:CDS | 45.0% | |
| CGAGGTTGTAAACTTCGTCT+GGG | + | chr5.3:12598374-12598393 | None:intergenic | 45.0% | |
| CGGAAAGTCGCATTAATCAC+CGG | - | chr5.3:12598135-12598154 | MS.gene68048:CDS | 45.0% | |
| CTAAGTGCGTCAAGAGATTG+GGG | - | chr5.3:12599061-12599080 | MS.gene68048:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+AGG | - | chr5.3:12598144-12598163 | MS.gene68048:CDS | 45.0% | |
| GCTGGATCTTCCGAAATGTT+TGG | - | chr5.3:12598534-12598553 | MS.gene68048:CDS | 45.0% | |
| GTGATTAATGCGACTTTCCG+CGG | + | chr5.3:12598135-12598154 | None:intergenic | 45.0% | |
| TAAGGAGACCGAGGATGAAA+CGG | + | chr5.3:12598591-12598610 | None:intergenic | 45.0% | |
| TCAAGAGATTGGGGATTTGC+TGG | - | chr5.3:12599070-12599089 | MS.gene68048:CDS | 45.0% | |
| TGATTATGTTGTGGCGACAG+AGG | - | chr5.3:12599141-12599160 | MS.gene68048:CDS | 45.0% | |
| TGTTGAGGAGGAATTCCGTT+AGG | + | chr5.3:12598185-12598204 | None:intergenic | 45.0% | |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.3:12599108-12599127 | MS.gene68048:CDS | 45.0% |
| ! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.3:12599168-12599187 | MS.gene68048:CDS | 45.0% |
| !! | CGTTTGTTGTTGACGGTGTT+GGG | + | chr5.3:12598095-12598114 | None:intergenic | 45.0% |
| !! | GTTTGTTGTTGACGGTGTTG+GGG | + | chr5.3:12598094-12598113 | None:intergenic | 45.0% |
| AACAAAGGCTACTCCGTCCA+CGG | - | chr5.3:12598201-12598220 | MS.gene68048:CDS | 50.0% | |
| AACGGAGTCGTTTCAGACTG+CGG | + | chr5.3:12598573-12598592 | None:intergenic | 50.0% | |
| ACTGCCGATGTTGTAGCTAC+CGG | - | chr5.3:12598438-12598457 | MS.gene68048:CDS | 50.0% | |
| CATCTACATCGATCCACACG+AGG | - | chr5.3:12598269-12598288 | MS.gene68048:CDS | 50.0% | |
| CCCAATCTCTTGACGCACTT+AGG | + | chr5.3:12599063-12599082 | None:intergenic | 50.0% | |
| GCGAGGTTGTAAACTTCGTC+TGG | + | chr5.3:12598375-12598394 | None:intergenic | 50.0% | |
| GGTTGTAAACTTCGTCTGGG+AGG | + | chr5.3:12598371-12598390 | None:intergenic | 50.0% | |
| TCCATCTTGGCCTGTGATTC+CGG | + | chr5.3:12598157-12598176 | None:intergenic | 50.0% | |
| ! | TTCAAGAAGACGGAGAGCAC+CGG | + | chr5.3:12598460-12598479 | None:intergenic | 50.0% |
| !! | AGAGGAAGCGTCAGAGAGAT+CGG | + | chr5.3:12598325-12598344 | None:intergenic | 50.0% |
| !! | AGCACCGGTAGCTACAACAT+CGG | + | chr5.3:12598445-12598464 | None:intergenic | 50.0% |
| !! | CCGTTTGTTGTTGACGGTGT+TGG | + | chr5.3:12598096-12598115 | None:intergenic | 50.0% |
| !! | GTGTCGCCGTTTGTTGTTGA+CGG | + | chr5.3:12598102-12598121 | None:intergenic | 50.0% |
| !! | GTTGACGGTGTTGGGGTTTT+GGG | + | chr5.3:12598087-12598106 | None:intergenic | 50.0% |
| !! | TGTTGACGGTGTTGGGGTTT+TGG | + | chr5.3:12598088-12598107 | None:intergenic | 50.0% |
| ACCGGAATCACAGGCCAAGA+TGG | - | chr5.3:12598153-12598172 | MS.gene68048:CDS | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.3:12598197-12598216 | None:intergenic | 55.0% | |
| GACAGAGGTTTCGCATACGG+TGG | - | chr5.3:12599156-12599175 | MS.gene68048:CDS | 55.0% | |
| GGACGGAGTAGCCTTTGTTG+AGG | + | chr5.3:12598200-12598219 | None:intergenic | 55.0% | |
| GGCGACAGAGGTTTCGCATA+CGG | - | chr5.3:12599153-12599172 | MS.gene68048:CDS | 55.0% | |
| GTACCAATGCGCAGCGACTT+TGG | + | chr5.3:12598622-12598641 | None:intergenic | 55.0% | |
| ! | GCGACTTTGGAGGCAGCATA+AGG | + | chr5.3:12598609-12598628 | None:intergenic | 55.0% |
| ! | TGAGCTTTGTGAGCCTCGTG+TGG | + | chr5.3:12598285-12598304 | None:intergenic | 55.0% |
| AACCGCGACGTGAGACTGTG+CGG | + | chr5.3:12598397-12598416 | None:intergenic | 60.0% | |
| AATGCGACTTTCCGCGGTGC+AGG | + | chr5.3:12598129-12598148 | None:intergenic | 60.0% | |
| ACGAACGGCGAATTAGGCCG+TGG | + | chr5.3:12598221-12598240 | None:intergenic | 60.0% | |
| ACGGCGAATTAGGCCGTGGA+CGG | + | chr5.3:12598217-12598236 | None:intergenic | 60.0% | |
| CCAATGCGCAGCGACTTTGG+AGG | + | chr5.3:12598619-12598638 | None:intergenic | 60.0% | |
| CCTCCAAAGTCGCTGCGCAT+TGG | - | chr5.3:12598616-12598635 | MS.gene68048:intron | 60.0% | |
| GAGGCAGCATAAGGAGACCG+AGG | + | chr5.3:12598600-12598619 | None:intergenic | 60.0% | |
| GGAGTCGTTTCAGACTGCGG+CGG | + | chr5.3:12598570-12598589 | None:intergenic | 60.0% | |
| ! | GGAGGATAGTGTCGAGCCAG+CGG | + | chr5.3:12598353-12598372 | None:intergenic | 60.0% |
| GACTTTCCGCGGTGCAGGAG+TGG | + | chr5.3:12598124-12598143 | None:intergenic | 65.0% | |
| GTCGTTTCAGACTGCGGCGG+CGG | + | chr5.3:12598567-12598586 | None:intergenic | 65.0% | |
| ! | GGATAGTGTCGAGCCAGCGG+CGG | + | chr5.3:12598350-12598369 | None:intergenic | 65.0% |
| ACGCTTCCTCTCTCCGCCGC+TGG | - | chr5.3:12598334-12598353 | MS.gene68048:CDS | 70.0% | |
| CGACGTGAGACTGTGCGGCG+AGG | + | chr5.3:12598392-12598411 | None:intergenic | 70.0% | |
| CGCCGCACAGTCTCACGTCG+CGG | - | chr5.3:12598392-12598411 | MS.gene68048:CDS | 70.0% | |
| GCGACACCACTCCTGCACCG+CGG | - | chr5.3:12598115-12598134 | MS.gene68048:CDS | 70.0% | |
| GTCGAGCCAGCGGCGGAGAG+AGG | + | chr5.3:12598343-12598362 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12598069 | 12599438 | 12598069 | ID=MS.gene68048 |
| chr5.3 | mRNA | 12598069 | 12599438 | 12598069 | ID=MS.gene68048.t1;Parent=MS.gene68048 |
| chr5.3 | exon | 12598870 | 12599438 | 12598870 | ID=MS.gene68048.t1.exon1;Parent=MS.gene68048.t1 |
| chr5.3 | CDS | 12598870 | 12599438 | 12598870 | ID=cds.MS.gene68048.t1;Parent=MS.gene68048.t1 |
| chr5.3 | exon | 12598069 | 12598609 | 12598069 | ID=MS.gene68048.t1.exon2;Parent=MS.gene68048.t1 |
| chr5.3 | CDS | 12598069 | 12598609 | 12598069 | ID=cds.MS.gene68048.t1;Parent=MS.gene68048.t1 |
| Gene Sequence |
| Protein sequence |
