Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68212.t1 | XP_003603941.1 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 5.40E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68212.t1 | B9HRL7 | 78.4 | 306 | 66 | 0 | 7 | 312 | 1 | 306 | 1.7e-139 | 496.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68212.t1 | G7J743 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 3.9e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23274 | MS.gene68212 | PPI |
| MS.gene039472 | MS.gene68212 | PPI |
| MS.gene68212 | MS.gene003737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68212.t1 | MTR_3g116840 | 95.192 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 0.0 | 615 |
| MS.gene68212.t1 | MTR_3g111980 | 71.895 | 306 | 84 | 1 | 9 | 312 | 5 | 310 | 3.32e-165 | 462 |
| MS.gene68212.t1 | MTR_3g111990 | 69.079 | 304 | 94 | 0 | 9 | 312 | 5 | 308 | 9.54e-161 | 450 |
| MS.gene68212.t1 | MTR_5g020740 | 68.092 | 304 | 97 | 0 | 9 | 312 | 6 | 309 | 1.48e-156 | 440 |
| MS.gene68212.t1 | MTR_4g070370 | 66.887 | 302 | 100 | 0 | 9 | 310 | 8 | 309 | 2.42e-152 | 430 |
| MS.gene68212.t1 | MTR_4g070340 | 62.258 | 310 | 115 | 1 | 1 | 310 | 1 | 308 | 9.02e-145 | 411 |
| MS.gene68212.t1 | MTR_4g070340 | 61.290 | 310 | 113 | 2 | 1 | 310 | 1 | 303 | 1.37e-139 | 397 |
| MS.gene68212.t1 | MTR_5g020760 | 54.921 | 315 | 130 | 3 | 9 | 312 | 5 | 318 | 1.70e-118 | 343 |
| MS.gene68212.t1 | MTR_5g020800 | 54.603 | 315 | 131 | 3 | 9 | 312 | 5 | 318 | 3.85e-118 | 343 |
| MS.gene68212.t1 | MTR_4g070340 | 61.728 | 243 | 93 | 0 | 66 | 308 | 15 | 257 | 1.11e-113 | 330 |
| MS.gene68212.t1 | MTR_4g070360 | 49.346 | 306 | 153 | 1 | 9 | 312 | 4 | 309 | 3.45e-106 | 312 |
| MS.gene68212.t1 | MTR_5g020760 | 54.615 | 260 | 107 | 2 | 9 | 257 | 5 | 264 | 1.47e-96 | 286 |
| MS.gene68212.t1 | MTR_5g027290 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 4.07e-95 | 284 |
| MS.gene68212.t1 | MTR_8g071130 | 47.742 | 310 | 155 | 4 | 9 | 312 | 4 | 312 | 6.42e-95 | 283 |
| MS.gene68212.t1 | MTR_5g027240 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 1.51e-93 | 280 |
| MS.gene68212.t1 | MTR_3g008100 | 43.506 | 308 | 162 | 5 | 9 | 312 | 6 | 305 | 4.57e-85 | 258 |
| MS.gene68212.t1 | MTR_3g008140 | 44.590 | 305 | 162 | 5 | 9 | 312 | 6 | 304 | 1.54e-84 | 257 |
| MS.gene68212.t1 | MTR_3g007970 | 43.279 | 305 | 167 | 4 | 9 | 312 | 6 | 305 | 8.20e-83 | 253 |
| MS.gene68212.t1 | MTR_3g008100 | 42.532 | 308 | 158 | 5 | 9 | 312 | 6 | 298 | 5.23e-81 | 248 |
| MS.gene68212.t1 | MTR_1g093720 | 37.705 | 305 | 187 | 2 | 10 | 312 | 15 | 318 | 1.08e-68 | 218 |
| MS.gene68212.t1 | MTR_3g008100 | 41.089 | 202 | 107 | 5 | 9 | 206 | 6 | 199 | 2.45e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68212.t1 | AT4G39230 | 75.658 | 304 | 74 | 0 | 9 | 312 | 5 | 308 | 1.14e-175 | 488 |
| MS.gene68212.t1 | AT1G75280 | 67.869 | 305 | 95 | 2 | 9 | 311 | 6 | 309 | 1.41e-151 | 427 |
| MS.gene68212.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 6 | 310 | 2.55e-149 | 422 |
| MS.gene68212.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 33 | 337 | 1.19e-148 | 421 |
| MS.gene68212.t1 | AT1G75300 | 60.188 | 319 | 108 | 2 | 9 | 311 | 6 | 321 | 8.95e-137 | 390 |
| MS.gene68212.t1 | AT1G19540 | 59.355 | 310 | 122 | 2 | 7 | 312 | 1 | 310 | 4.65e-134 | 383 |
| MS.gene68212.t1 | AT1G19540 | 60.000 | 255 | 98 | 2 | 7 | 257 | 1 | 255 | 2.57e-105 | 308 |
| MS.gene68212.t1 | AT4G34540 | 47.697 | 304 | 154 | 1 | 9 | 312 | 8 | 306 | 9.52e-102 | 301 |
| MS.gene68212.t1 | AT1G32100 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 6.01e-84 | 256 |
| MS.gene68212.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
| MS.gene68212.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
Find 65 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGCTGCGCCGAATTC+TGG | 0.160415 | 3.1:-92170299 | None:intergenic |
| GCTCACTGTGTGTACATAAA+AGG | 0.206083 | 3.1:+92170962 | MS.gene68212:CDS |
| AATCTCAGACAAACTTATTA+AGG | 0.233599 | 3.1:-92171075 | None:intergenic |
| TCAATGATCTCGTATCTCTA+TGG | 0.304426 | 3.1:+92170655 | MS.gene68212:CDS |
| ATAGACAGCATCATATTTAA+TGG | 0.305042 | 3.1:-92170938 | None:intergenic |
| TTTGAAATTGATCCAACATT+TGG | 0.320418 | 3.1:+92170998 | MS.gene68212:CDS |
| AGATTCTTTCCTTCTGAATT+CGG | 0.325326 | 3.1:+92170217 | MS.gene68212:CDS |
| ACGGCATATGCACTCTTTGC+TGG | 0.343519 | 3.1:-92170271 | None:intergenic |
| ATCCTTGAATTTGTTGATGA+TGG | 0.347770 | 3.1:-92169692 | None:intergenic |
| TGCTTCAGAATCTGTTCCTC+TGG | 0.349482 | 3.1:-92170717 | None:intergenic |
| AACATTTCCAGCTTCTTTGA+TGG | 0.352360 | 3.1:-92170085 | None:intergenic |
| GTGTCAAGCAACTACTTTGC+TGG | 0.363642 | 3.1:+92170346 | MS.gene68212:CDS |
| GATCAATTTCAAAGTTAGTA+TGG | 0.379619 | 3.1:-92170988 | None:intergenic |
| CTCACTGTGTGTACATAAAA+GGG | 0.386311 | 3.1:+92170963 | MS.gene68212:CDS |
| TCTATATGATCATCAAAGTT+TGG | 0.394266 | 3.1:+92169981 | MS.gene68212:CDS |
| CAAAGAAGCTGGAAATGTTA+AGG | 0.420593 | 3.1:+92170089 | MS.gene68212:CDS |
| CGGTTACATCGGAAAGTTCA+TGG | 0.428326 | 3.1:+92169591 | MS.gene68212:CDS |
| AGGATAACAACTTTATCTCT+TGG | 0.434576 | 3.1:-92170412 | None:intergenic |
| ATCCATCATCAACAAATTCA+AGG | 0.437302 | 3.1:+92169690 | MS.gene68212:CDS |
| GCGCCGAATTCTGGCTTTAA+CGG | 0.452773 | 3.1:-92170290 | None:intergenic |
| ATCTCTGCCATCAAAGAAGC+TGG | 0.461263 | 3.1:+92170078 | MS.gene68212:CDS |
| AGAGATAAAGTTGTTATCCT+AGG | 0.472690 | 3.1:+92170415 | MS.gene68212:CDS |
| ATGCCGTTAAAGCCAGAATT+CGG | 0.486275 | 3.1:+92170287 | MS.gene68212:CDS |
| CAATGATCTCGTATCTCTAT+GGG | 0.490781 | 3.1:+92170656 | MS.gene68212:CDS |
| TCTCTATGGGAGAAGAAGAT+TGG | 0.494193 | 3.1:+92170669 | MS.gene68212:CDS |
| ACGTACAACAACAAGATTGA+CGG | 0.497659 | 3.1:-92169719 | None:intergenic |
| CTTTGGGGTTTCCATCTCCT+AGG | 0.498008 | 3.1:-92170432 | None:intergenic |
| ACAGTGGTGTATTTCACATC+AGG | 0.498107 | 3.1:-92171043 | None:intergenic |
| ATAACAACTTTATCTCTTGG+TGG | 0.500817 | 3.1:-92170409 | None:intergenic |
| GATGGATGATTTAGCAGGGT+TGG | 0.503796 | 3.1:-92169674 | None:intergenic |
| CAGATTCTGAAGCAAATTCA+AGG | 0.506368 | 3.1:+92170726 | MS.gene68212:CDS |
| TTGATGATGGATGATTTAGC+AGG | 0.525812 | 3.1:-92169679 | None:intergenic |
| GAGTTGAGTCTCGGATGAGA+AGG | 0.525951 | 3.1:-92169648 | None:intergenic |
| AGCTCCATGCTGTGATAAAG+AGG | 0.527862 | 3.1:-92170380 | None:intergenic |
| AAAGTTGTTATCCTAGGAGA+TGG | 0.536929 | 3.1:+92170421 | MS.gene68212:CDS |
| GTAGCTTCTACTCCAAATGT+TGG | 0.537034 | 3.1:-92171010 | None:intergenic |
| TTCTGAATTCGGAAATGATG+TGG | 0.539147 | 3.1:+92170228 | MS.gene68212:CDS |
| TCTCGGATGAGAAGGAAGGT+TGG | 0.539639 | 3.1:-92169640 | None:intergenic |
| ATCGGTGGCAGCGGTTACAT+CGG | 0.540698 | 3.1:+92169580 | MS.gene68212:CDS |
| GTGGAAGCTAGCGTCAAAGC+TGG | 0.545923 | 3.1:+92169613 | MS.gene68212:CDS |
| ACATCATTTCCGAATTCAGA+AGG | 0.559910 | 3.1:-92170226 | None:intergenic |
| CTACCCTCTTTATCACAGCA+TGG | 0.560618 | 3.1:+92170376 | MS.gene68212:CDS |
| TTGAAAGACAAGGCATTACC+TGG | 0.560825 | 3.1:-92170636 | None:intergenic |
| CAGAATTCGGCGCAGCATTG+AGG | 0.562868 | 3.1:+92170300 | MS.gene68212:CDS |
| CGGCGCAGCATTGAGGCAGA+AGG | 0.565766 | 3.1:+92170307 | MS.gene68212:CDS |
| TTTAAATTGCAATGGCAGGT+GGG | 0.575232 | 3.1:+92169530 | None:intergenic |
| TTGCTTGACACATAAGTGTA+CGG | 0.597039 | 3.1:-92170334 | None:intergenic |
| GGATGAGAAGGAAGGTTGGA+TGG | 0.597335 | 3.1:-92169636 | None:intergenic |
| TGATGATGGATGATTTAGCA+GGG | 0.603826 | 3.1:-92169678 | None:intergenic |
| AATTCGGAAATGATGTGGAT+CGG | 0.605620 | 3.1:+92170233 | MS.gene68212:CDS |
| ATTCTGTATATTAGACCACC+AGG | 0.614061 | 3.1:+92170618 | MS.gene68212:CDS |
| GGTTGGAAAGAGTTGAGTCT+CGG | 0.615631 | 3.1:-92169657 | None:intergenic |
| TGAAAGAATCTATGTTCCAG+AGG | 0.633249 | 3.1:+92170701 | MS.gene68212:CDS |
| GACAGCATCATATTTAATGG+AGG | 0.637215 | 3.1:-92170935 | None:intergenic |
| TGAGTCTCGGATGAGAAGGA+AGG | 0.639125 | 3.1:-92169644 | None:intergenic |
| CATCATATTTAATGGAGGCG+AGG | 0.648947 | 3.1:-92170930 | None:intergenic |
| GCTCCATGCTGTGATAAAGA+GGG | 0.649603 | 3.1:-92170379 | None:intergenic |
| TGATCTTGTCTTGAACACTC+AGG | 0.656329 | 3.1:-92170056 | None:intergenic |
| TACGAGATCATTGAAAGACA+AGG | 0.657957 | 3.1:-92170646 | None:intergenic |
| TCACTGTGTGTACATAAAAG+GGG | 0.662298 | 3.1:+92170964 | MS.gene68212:CDS |
| CATGCTGTGATAAAGAGGGT+AGG | 0.664558 | 3.1:-92170375 | None:intergenic |
| CTAGGAGATGGAAACCCCAA+AGG | 0.669328 | 3.1:+92170433 | MS.gene68212:CDS |
| ATTAAGGAACTCATCTACAG+TGG | 0.700053 | 3.1:-92171059 | None:intergenic |
| AAAGACAAGGCATTACCTGG+TGG | 0.724041 | 3.1:-92170633 | None:intergenic |
| TTACATCGGAAAGTTCATGG+TGG | 0.773819 | 3.1:+92169594 | MS.gene68212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170834-92170853 | None:intergenic | 100.0% |
| !!! | CATTAAATTTTCTTACTAAT+AGG | + | chr3.1:92170496-92170515 | MS.gene68212:intron | 15.0% |
| !!! | GTGGTTTAATAATTTAATTT+TGG | + | chr3.1:92170895-92170914 | MS.gene68212:intron | 15.0% |
| !!! | AATATACAGAATTTTGTTCA+AGG | - | chr3.1:92170610-92170629 | None:intergenic | 20.0% |
| !!! | AGCAGTATTTAAGATTTTTA+AGG | - | chr3.1:92169858-92169877 | None:intergenic | 20.0% |
| ! | ATAGACAGCATCATATTTAA+TGG | - | chr3.1:92170941-92170960 | None:intergenic | 25.0% |
| ! | GATCAATTTCAAAGTTAGTA+TGG | - | chr3.1:92170991-92171010 | None:intergenic | 25.0% |
| ! | TCTATATGATCATCAAAGTT+TGG | + | chr3.1:92169981-92170000 | MS.gene68212:CDS | 25.0% |
| !! | ATGAGCAAGATTTTATTGAT+CGG | + | chr3.1:92169562-92169581 | MS.gene68212:CDS | 25.0% |
| !! | TAAAGTATTATGAACAGCAA+AGG | - | chr3.1:92170763-92170782 | None:intergenic | 25.0% |
| !! | TTAATCTTTTTATGATTCCC+AGG | + | chr3.1:92170780-92170799 | MS.gene68212:intron | 25.0% |
| !! | TTTGAAATTGATCCAACATT+TGG | + | chr3.1:92170998-92171017 | MS.gene68212:CDS | 25.0% |
| AGAGATAAAGTTGTTATCCT+AGG | + | chr3.1:92170415-92170434 | MS.gene68212:CDS | 30.0% | |
| AGATTCTTTCCTTCTGAATT+CGG | + | chr3.1:92170217-92170236 | MS.gene68212:CDS | 30.0% | |
| AGCGTATTATATATATGCAG+GGG | + | chr3.1:92169956-92169975 | MS.gene68212:intron | 30.0% | |
| AGGATAACAACTTTATCTCT+TGG | - | chr3.1:92170415-92170434 | None:intergenic | 30.0% | |
| ATAACAACTTTATCTCTTGG+TGG | - | chr3.1:92170412-92170431 | None:intergenic | 30.0% | |
| ATCCATCATCAACAAATTCA+AGG | + | chr3.1:92169690-92169709 | MS.gene68212:CDS | 30.0% | |
| CAGCGTATTATATATATGCA+GGG | + | chr3.1:92169955-92169974 | MS.gene68212:intron | 30.0% | |
| TACTATATATGCTACCAGAA+AGG | - | chr3.1:92169756-92169775 | None:intergenic | 30.0% | |
| TCAGCGTATTATATATATGC+AGG | + | chr3.1:92169954-92169973 | MS.gene68212:intron | 30.0% | |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr3.1:92170603-92170622 | None:intergenic | 30.0% |
| ! | CATGTCAAATTTTGTGTATC+AGG | + | chr3.1:92169920-92169939 | MS.gene68212:intron | 30.0% |
| !! | ATCCTTGAATTTGTTGATGA+TGG | - | chr3.1:92169695-92169714 | None:intergenic | 30.0% |
| !!! | ATCAACAGCTGTTTTTAACA+AGG | + | chr3.1:92170536-92170555 | MS.gene68212:intron | 30.0% |
| AAAGTTGTTATCCTAGGAGA+TGG | + | chr3.1:92170421-92170440 | MS.gene68212:CDS | 35.0% | |
| AACATTTCCAGCTTCTTTGA+TGG | - | chr3.1:92170088-92170107 | None:intergenic | 35.0% | |
| AATTCGGAAATGATGTGGAT+CGG | + | chr3.1:92170233-92170252 | MS.gene68212:CDS | 35.0% | |
| ACATCATTTCCGAATTCAGA+AGG | - | chr3.1:92170229-92170248 | None:intergenic | 35.0% | |
| ACGTACAACAACAAGATTGA+CGG | - | chr3.1:92169722-92169741 | None:intergenic | 35.0% | |
| ATATGCTACCAGAAAGGAAT+AGG | - | chr3.1:92169750-92169769 | None:intergenic | 35.0% | |
| ATTAAGGAACTCATCTACAG+TGG | - | chr3.1:92171062-92171081 | None:intergenic | 35.0% | |
| ATTCTGTATATTAGACCACC+AGG | + | chr3.1:92170618-92170637 | MS.gene68212:CDS | 35.0% | |
| CAAAGAAGCTGGAAATGTTA+AGG | + | chr3.1:92170089-92170108 | MS.gene68212:CDS | 35.0% | |
| CAATGATCTCGTATCTCTAT+GGG | + | chr3.1:92170656-92170675 | MS.gene68212:CDS | 35.0% | |
| CTCACTGTGTGTACATAAAA+GGG | + | chr3.1:92170963-92170982 | MS.gene68212:CDS | 35.0% | |
| GACAGCATCATATTTAATGG+AGG | - | chr3.1:92170938-92170957 | None:intergenic | 35.0% | |
| GCGTATTATATATATGCAGG+GGG | + | chr3.1:92169957-92169976 | MS.gene68212:intron | 35.0% | |
| TACGAGATCATTGAAAGACA+AGG | - | chr3.1:92170649-92170668 | None:intergenic | 35.0% | |
| TCAATGATCTCGTATCTCTA+TGG | + | chr3.1:92170655-92170674 | MS.gene68212:CDS | 35.0% | |
| TCACTGTGTGTACATAAAAG+GGG | + | chr3.1:92170964-92170983 | MS.gene68212:CDS | 35.0% | |
| TGAAAGAATCTATGTTCCAG+AGG | + | chr3.1:92170701-92170720 | MS.gene68212:CDS | 35.0% | |
| TTCTGAATTCGGAAATGATG+TGG | + | chr3.1:92170228-92170247 | MS.gene68212:CDS | 35.0% | |
| TTGCTTGACACATAAGTGTA+CGG | - | chr3.1:92170337-92170356 | None:intergenic | 35.0% | |
| ! | ACTCAAACTGATCGATTCAT+GGG | + | chr3.1:92169779-92169798 | MS.gene68212:intron | 35.0% |
| ! | AGCAAGATTTTATTGATCGG+TGG | + | chr3.1:92169565-92169584 | MS.gene68212:CDS | 35.0% |
| !! | CAGATTCTGAAGCAAATTCA+AGG | + | chr3.1:92170726-92170745 | MS.gene68212:CDS | 35.0% |
| !! | TGATGATGGATGATTTAGCA+GGG | - | chr3.1:92169681-92169700 | None:intergenic | 35.0% |
| !! | TTGATGATGGATGATTTAGC+AGG | - | chr3.1:92169682-92169701 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTTAACAAGGAAG+AGG | + | chr3.1:92170542-92170561 | MS.gene68212:intron | 35.0% |
| !!! | GTGTCTAGTTTTACACCTTT+GGG | - | chr3.1:92170451-92170470 | None:intergenic | 35.0% |
| !!! | TGTCTAGTTTTACACCTTTG+GGG | - | chr3.1:92170450-92170469 | None:intergenic | 35.0% |
| !!! | TGTGTCTAGTTTTACACCTT+TGG | - | chr3.1:92170452-92170471 | None:intergenic | 35.0% |
| ACAGTGGTGTATTTCACATC+AGG | - | chr3.1:92171046-92171065 | None:intergenic | 40.0% | |
| ATGCCGTTAAAGCCAGAATT+CGG | + | chr3.1:92170287-92170306 | MS.gene68212:CDS | 40.0% | |
| CAAACCACATGTGTTAGACT+CGG | + | chr3.1:92170873-92170892 | MS.gene68212:intron | 40.0% | |
| CATCATATTTAATGGAGGCG+AGG | - | chr3.1:92170933-92170952 | None:intergenic | 40.0% | |
| CGTCAAATCCTATTCCTTTC+TGG | + | chr3.1:92169739-92169758 | MS.gene68212:intron | 40.0% | |
| GCTCACTGTGTGTACATAAA+AGG | + | chr3.1:92170962-92170981 | MS.gene68212:CDS | 40.0% | |
| GTAGCTTCTACTCCAAATGT+TGG | - | chr3.1:92171013-92171032 | None:intergenic | 40.0% | |
| TCTCTATGGGAGAAGAAGAT+TGG | + | chr3.1:92170669-92170688 | MS.gene68212:CDS | 40.0% | |
| TGATCTTGTCTTGAACACTC+AGG | - | chr3.1:92170059-92170078 | None:intergenic | 40.0% | |
| TTACATCGGAAAGTTCATGG+TGG | + | chr3.1:92169594-92169613 | MS.gene68212:CDS | 40.0% | |
| ! | ATTTTATTGATCGGTGGCAG+CGG | + | chr3.1:92169571-92169590 | MS.gene68212:CDS | 40.0% |
| ! | GACTCAAACTGATCGATTCA+TGG | + | chr3.1:92169778-92169797 | MS.gene68212:intron | 40.0% |
| ! | TTGAAAGACAAGGCATTACC+TGG | - | chr3.1:92170639-92170658 | None:intergenic | 40.0% |
| AGCTCCATGCTGTGATAAAG+AGG | - | chr3.1:92170383-92170402 | None:intergenic | 45.0% | |
| ATCTCTGCCATCAAAGAAGC+TGG | + | chr3.1:92170078-92170097 | MS.gene68212:CDS | 45.0% | |
| CATGCTGTGATAAAGAGGGT+AGG | - | chr3.1:92170378-92170397 | None:intergenic | 45.0% | |
| CGGTTACATCGGAAAGTTCA+TGG | + | chr3.1:92169591-92169610 | MS.gene68212:CDS | 45.0% | |
| CTACCCTCTTTATCACAGCA+TGG | + | chr3.1:92170376-92170395 | MS.gene68212:CDS | 45.0% | |
| GATGGATGATTTAGCAGGGT+TGG | - | chr3.1:92169677-92169696 | None:intergenic | 45.0% | |
| GCTCCATGCTGTGATAAAGA+GGG | - | chr3.1:92170382-92170401 | None:intergenic | 45.0% | |
| GGTTGGAAAGAGTTGAGTCT+CGG | - | chr3.1:92169660-92169679 | None:intergenic | 45.0% | |
| GTGTCAAGCAACTACTTTGC+TGG | + | chr3.1:92170346-92170365 | MS.gene68212:CDS | 45.0% | |
| TGCTTCAGAATCTGTTCCTC+TGG | - | chr3.1:92170720-92170739 | None:intergenic | 45.0% | |
| TGGTACTGTGTTCGATTCCT+GGG | - | chr3.1:92170800-92170819 | None:intergenic | 45.0% | |
| ! | AAAGACAAGGCATTACCTGG+TGG | - | chr3.1:92170636-92170655 | None:intergenic | 45.0% |
| ACCACATGTGTTAGACTCGG+TGG | + | chr3.1:92170876-92170895 | MS.gene68212:intron | 50.0% | |
| ACCACCGAGTCTAACACATG+TGG | - | chr3.1:92170880-92170899 | None:intergenic | 50.0% | |
| ACGGCATATGCACTCTTTGC+TGG | - | chr3.1:92170274-92170293 | None:intergenic | 50.0% | |
| CTAGGAGATGGAAACCCCAA+AGG | + | chr3.1:92170433-92170452 | MS.gene68212:CDS | 50.0% | |
| GAGTTGAGTCTCGGATGAGA+AGG | - | chr3.1:92169651-92169670 | None:intergenic | 50.0% | |
| GGATGAGAAGGAAGGTTGGA+TGG | - | chr3.1:92169639-92169658 | None:intergenic | 50.0% | |
| GTGGTACTGTGTTCGATTCC+TGG | - | chr3.1:92170801-92170820 | None:intergenic | 50.0% | |
| TCTCGGATGAGAAGGAAGGT+TGG | - | chr3.1:92169643-92169662 | None:intergenic | 50.0% | |
| TGAGTCTCGGATGAGAAGGA+AGG | - | chr3.1:92169647-92169666 | None:intergenic | 50.0% | |
| ! | ACACATGTGGTTTGTGTGCG+TGG | - | chr3.1:92170867-92170886 | None:intergenic | 50.0% |
| ! | ACATGTGGTTTGTGTGCGTG+GGG | - | chr3.1:92170865-92170884 | None:intergenic | 50.0% |
| ! | CACATGTGGTTTGTGTGCGT+GGG | - | chr3.1:92170866-92170885 | None:intergenic | 50.0% |
| !! | CTTTGGGGTTTCCATCTCCT+AGG | - | chr3.1:92170435-92170454 | None:intergenic | 50.0% |
| !! | GCGCCGAATTCTGGCTTTAA+CGG | - | chr3.1:92170293-92170312 | None:intergenic | 50.0% |
| ATCGGTGGCAGCGGTTACAT+CGG | + | chr3.1:92169580-92169599 | MS.gene68212:CDS | 55.0% | |
| CAGAATTCGGCGCAGCATTG+AGG | + | chr3.1:92170300-92170319 | MS.gene68212:CDS | 55.0% | |
| CTCAATGCTGCGCCGAATTC+TGG | - | chr3.1:92170302-92170321 | None:intergenic | 55.0% | |
| GTGGAAGCTAGCGTCAAAGC+TGG | + | chr3.1:92169613-92169632 | MS.gene68212:CDS | 55.0% | |
| ! | ATGTGGTTTGTGTGCGTGGG+GGG | - | chr3.1:92170863-92170882 | None:intergenic | 55.0% |
| ! | CATGTGGTTTGTGTGCGTGG+GGG | - | chr3.1:92170864-92170883 | None:intergenic | 55.0% |
| !! | GGGGGGTGTTGTAAATCTCG+TGG | - | chr3.1:92170820-92170839 | None:intergenic | 55.0% |
| ! | TGTGGTTTGTGTGCGTGGGG+GGG | - | chr3.1:92170862-92170881 | None:intergenic | 60.0% |
| ! | CGGCGCAGCATTGAGGCAGA+AGG | + | chr3.1:92170307-92170326 | MS.gene68212:CDS | 65.0% |
| ! | GTGGTTTGTGTGCGTGGGGG+GGG | - | chr3.1:92170861-92170880 | None:intergenic | 65.0% |
| ! | TGGTTTGTGTGCGTGGGGGG+GGG | - | chr3.1:92170860-92170879 | None:intergenic | 65.0% |
| GGTTTGTGTGCGTGGGGGGG+GGG | - | chr3.1:92170859-92170878 | None:intergenic | 70.0% | |
| GTTTGTGTGCGTGGGGGGGG+GGG | - | chr3.1:92170858-92170877 | None:intergenic | 70.0% | |
| TTTGTGTGCGTGGGGGGGGG+GGG | - | chr3.1:92170857-92170876 | None:intergenic | 70.0% | |
| TTGTGTGCGTGGGGGGGGGG+GGG | - | chr3.1:92170856-92170875 | None:intergenic | 75.0% | |
| ! | TGTGTGCGTGGGGGGGGGGG+GGG | - | chr3.1:92170855-92170874 | None:intergenic | 80.0% |
| ! | GTGTGCGTGGGGGGGGGGGG+GGG | - | chr3.1:92170854-92170873 | None:intergenic | 85.0% |
| ! | TGTGCGTGGGGGGGGGGGGG+GGG | - | chr3.1:92170853-92170872 | None:intergenic | 85.0% |
| ! | GTGCGTGGGGGGGGGGGGGG+GGG | - | chr3.1:92170852-92170871 | None:intergenic | 90.0% |
| ! | TGCGTGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170851-92170870 | None:intergenic | 90.0% |
| ! | CGTGGGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170849-92170868 | None:intergenic | 95.0% |
| ! | GCGTGGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170850-92170869 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170848-92170867 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.1:92170847-92170866 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92169541 | 92171093 | 92169541 | ID=MS.gene68212 |
| chr3.1 | mRNA | 92169541 | 92171093 | 92169541 | ID=MS.gene68212.t1;Parent=MS.gene68212 |
| chr3.1 | exon | 92169541 | 92169735 | 92169541 | ID=MS.gene68212.t1.exon1;Parent=MS.gene68212.t1 |
| chr3.1 | CDS | 92169541 | 92169735 | 92169541 | ID=cds.MS.gene68212.t1;Parent=MS.gene68212.t1 |
| chr3.1 | exon | 92169976 | 92170110 | 92169976 | ID=MS.gene68212.t1.exon2;Parent=MS.gene68212.t1 |
| chr3.1 | CDS | 92169976 | 92170110 | 92169976 | ID=cds.MS.gene68212.t1;Parent=MS.gene68212.t1 |
| chr3.1 | exon | 92170217 | 92170454 | 92170217 | ID=MS.gene68212.t1.exon3;Parent=MS.gene68212.t1 |
| chr3.1 | CDS | 92170217 | 92170454 | 92170217 | ID=cds.MS.gene68212.t1;Parent=MS.gene68212.t1 |
| chr3.1 | exon | 92170544 | 92170747 | 92170544 | ID=MS.gene68212.t1.exon4;Parent=MS.gene68212.t1 |
| chr3.1 | CDS | 92170544 | 92170747 | 92170544 | ID=cds.MS.gene68212.t1;Parent=MS.gene68212.t1 |
| chr3.1 | exon | 92170927 | 92171093 | 92170927 | ID=MS.gene68212.t1.exon5;Parent=MS.gene68212.t1 |
| chr3.1 | CDS | 92170927 | 92171093 | 92170927 | ID=cds.MS.gene68212.t1;Parent=MS.gene68212.t1 |
| Gene Sequence |
| Protein sequence |
