AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68682

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68682.t1 MTR_2g449850 77.273 66 14 1 160 224 35 100 5.06e-26 105
MS.gene68682.t1 MTR_2g449850 68.519 54 14 1 6 56 211 264 4.07e-16 77.0
MS.gene68682.t1 MTR_2g449850 40.000 100 54 3 73 169 221 317 8.24e-11 61.6
MS.gene68682.t1 MTR_3g434850 70.149 67 19 1 159 224 26 92 1.70e-24 100
MS.gene68682.t1 MTR_1g040370 66.667 66 21 1 160 224 27 92 4.85e-23 96.7
MS.gene68682.t1 MTR_1g102130 61.111 72 27 1 154 224 82 153 9.18e-21 90.5
MS.gene68682.t1 MTR_8g099930 56.000 75 24 1 150 224 30 95 2.19e-20 89.4
MS.gene68682.t1 MTR_3g498755 60.000 70 26 2 157 224 8 77 8.71e-20 87.8
MS.gene68682.t1 MTR_1g021010 63.636 66 23 1 165 229 78 143 1.17e-19 87.4
MS.gene68682.t1 MTR_1g021020 60.294 68 26 1 165 231 80 147 3.15e-19 86.3
MS.gene68682.t1 MTR_7g021130 57.746 71 27 1 154 224 25 92 3.77e-19 85.9
MS.gene68682.t1 MTR_3g090150 65.574 61 21 0 164 224 35 95 1.28e-18 84.3
MS.gene68682.t1 MTR_0075s0010 63.333 60 21 1 165 224 10 68 1.35e-18 83.2
MS.gene68682.t1 MTR_1g020090 59.091 66 26 1 165 229 92 157 1.70e-18 84.0
MS.gene68682.t1 MTR_4g089155 56.061 66 29 0 166 231 57 122 1.73e-18 84.0
MS.gene68682.t1 MTR_3g079630 64.516 62 21 1 164 224 79 140 3.15e-18 83.2
MS.gene68682.t1 MTR_5g072570 62.295 61 23 0 164 224 31 91 3.40e-18 83.2
MS.gene68682.t1 MTR_3g079620 64.516 62 21 1 164 224 79 140 4.07e-18 83.2
MS.gene68682.t1 MTR_3g079560 46.729 107 41 5 124 224 44 140 4.50e-18 82.8
MS.gene68682.t1 MTR_2g012850 57.576 66 28 0 166 231 39 104 7.02e-18 82.4
MS.gene68682.t1 MTR_2g012860 54.545 66 30 0 166 231 45 110 1.05e-17 81.6
MS.gene68682.t1 MTR_3g079570 62.903 62 22 1 164 224 80 141 1.06e-17 81.6
MS.gene68682.t1 MTR_3g079590 62.903 62 22 1 164 224 79 140 1.25e-17 81.6
MS.gene68682.t1 MTR_3g079600 62.295 61 22 1 165 224 78 138 4.17e-17 80.1
MS.gene68682.t1 MTR_3g090130 62.295 61 23 0 164 224 30 90 6.86e-17 79.3
MS.gene68682.t1 MTR_4g075150 51.515 66 32 0 166 231 38 103 1.50e-16 78.6
MS.gene68682.t1 MTR_4g075150 51.515 66 32 0 166 231 38 103 1.66e-16 78.2
MS.gene68682.t1 MTR_7g013790 50.000 66 33 0 166 231 39 104 2.43e-16 77.8
MS.gene68682.t1 MTR_3g034290 48.485 66 34 0 166 231 78 143 4.12e-15 73.9
MS.gene68682.t1 MTR_3g034290 48.485 66 34 0 166 231 78 143 5.63e-15 73.9
MS.gene68682.t1 MTR_4g122950 39.000 100 51 2 131 229 16 106 6.77e-15 73.6
MS.gene68682.t1 MTR_1g095560 53.731 67 28 2 166 229 36 102 8.53e-15 73.2
MS.gene68682.t1 MTR_1g095560 53.731 67 28 2 166 229 36 102 8.81e-15 73.2
MS.gene68682.t1 MTR_1g051175 60.714 56 21 1 170 224 20 75 1.21e-14 71.6
MS.gene68682.t1 MTR_1g095540 55.224 67 27 2 166 229 36 102 1.29e-14 72.8
MS.gene68682.t1 MTR_4g122960 41.758 91 51 2 141 229 16 106 1.76e-14 72.4
MS.gene68682.t1 MTR_0003s0560 46.154 65 35 0 165 229 76 140 6.05e-14 70.5
MS.gene68682.t1 MTR_0003s0560 46.154 65 35 0 165 229 76 140 1.11e-13 70.1
MS.gene68682.t1 MTR_2g062990 48.529 68 33 2 166 231 43 110 7.49e-13 67.4
MS.gene68682.t1 MTR_2g081620 41.772 79 44 2 155 231 33 111 2.36e-12 66.2
MS.gene68682.t1 MTR_2g063000 46.377 69 35 2 165 231 41 109 3.60e-12 65.5
MS.gene68682.t1 MTR_2g063000 46.377 69 35 2 165 231 41 109 3.74e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68682.t1 AT1G28110 67.797 59 19 0 166 224 35 93 2.19e-21 92.4
MS.gene68682.t1 AT1G28110 67.797 59 19 0 166 224 35 93 2.19e-21 92.4
MS.gene68682.t1 AT2G33530 61.194 67 25 1 159 224 29 95 1.75e-20 89.7
MS.gene68682.t1 AT5G23210 53.030 66 31 0 166 231 55 120 6.21e-18 82.4
MS.gene68682.t1 AT5G23210 53.030 66 31 0 166 231 55 120 6.35e-18 82.4
MS.gene68682.t1 AT1G61130 57.576 66 28 0 166 231 35 100 7.41e-18 82.4
MS.gene68682.t1 AT3G63470 53.623 69 32 0 166 234 85 153 5.47e-17 79.7
MS.gene68682.t1 AT5G42230 50.602 83 40 1 143 224 8 90 5.76e-17 79.7
MS.gene68682.t1 AT5G42230 50.602 83 40 1 143 224 8 90 5.76e-17 79.7
MS.gene68682.t1 AT3G02110 48.000 75 38 1 158 231 32 106 7.30e-17 79.3
MS.gene68682.t1 AT5G42240 62.295 61 23 0 164 224 34 94 8.03e-17 79.3
MS.gene68682.t1 AT1G43780 61.017 59 23 0 166 224 41 99 1.51e-16 78.6
MS.gene68682.t1 AT1G11080 54.545 66 30 0 166 231 54 119 1.63e-16 78.6
MS.gene68682.t1 AT1G11080 54.545 66 30 0 166 231 54 119 1.76e-16 78.2
MS.gene68682.t1 AT4G15100 54.545 66 30 0 166 231 48 113 2.89e-16 77.8
MS.gene68682.t1 AT3G56540 53.623 69 31 1 166 234 83 150 4.15e-16 75.5
MS.gene68682.t1 AT2G12480 59.322 59 24 0 166 224 35 93 5.01e-16 77.0
MS.gene68682.t1 AT2G12480 59.322 59 24 0 166 224 35 93 5.03e-16 77.0
MS.gene68682.t1 AT2G12480 59.322 59 24 0 166 224 35 93 5.24e-16 76.6
MS.gene68682.t1 AT2G12480 59.322 59 24 0 166 224 35 93 5.45e-16 76.6
MS.gene68682.t1 AT2G24010 49.231 65 33 0 165 229 33 97 9.06e-16 76.3
MS.gene68682.t1 AT2G24000 48.529 68 34 1 165 231 33 100 2.79e-15 74.7
MS.gene68682.t1 AT2G24000 48.529 68 34 1 165 231 33 100 3.59e-15 74.3
MS.gene68682.t1 AT3G07990 53.623 69 29 2 166 231 37 105 9.10e-15 73.2
MS.gene68682.t1 AT3G52020 61.818 55 21 0 166 220 83 137 1.32e-14 72.8
MS.gene68682.t1 AT4G30610 47.059 68 35 1 165 231 35 102 2.30e-14 72.0
MS.gene68682.t1 AT2G35770 39.080 87 52 1 146 231 21 107 2.69e-14 72.0
MS.gene68682.t1 AT2G05850 48.571 70 35 1 166 234 67 136 2.32e-13 69.3
MS.gene68682.t1 AT5G08260 45.714 70 37 1 166 234 43 112 2.68e-13 68.9
MS.gene68682.t1 AT2G35780 42.353 85 37 3 150 231 26 101 2.62e-12 65.9
MS.gene68682.t1 AT3G17180 41.429 70 39 2 164 231 40 109 1.56e-11 63.5
MS.gene68682.t1 AT3G17180 41.429 70 39 2 164 231 40 109 2.09e-11 63.5

Find 50 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGATTGGAAATCCTCTTT+TGG 0.283495 2.3:-39126347 MS.gene68682:intron
TAATCTTTGATTTAGCATTC+TGG 0.305925 2.3:-39125522 MS.gene68682:intron
TCATGATAAAACCTTTGATT+AGG 0.322904 2.3:+39126134 None:intergenic
TACTGGTCAAAATCTACTTT+TGG 0.330411 2.3:+39125008 None:intergenic
GGTTGCTCTTCCCTTGGCCT+AGG 0.358738 2.3:-39124772 MS.gene68682:CDS
TAGTCACGTTCCTTTCTTTG+TGG 0.369071 2.3:+39126077 None:intergenic
GGGCTTGGTTGCTCTTCCCT+TGG 0.375330 2.3:-39124778 MS.gene68682:CDS
GGAGCACCAAGGAGCATTGC+TGG 0.386767 2.3:-39124751 MS.gene68682:CDS
CACATCCTGCTGCAAATCCT+TGG 0.406831 2.3:+39125866 None:intergenic
GGCAGATAGGCTGCATCATC+CGG 0.425976 2.3:-39125619 MS.gene68682:intron
ATCAAACGGCAGGAACGAAT+TGG 0.427662 2.3:-39126229 MS.gene68682:CDS
GGTTCGTGATCGTTCCTGAC+AGG 0.432018 2.3:-39126177 MS.gene68682:CDS
CGAATTTCACGTTCCTGACA+TGG 0.436605 2.3:-39126198 MS.gene68682:CDS
ATCTGGTATCTGTGGTCTCA+TGG 0.442871 2.3:-39126307 MS.gene68682:CDS
TTGTAAATCTGGAGTAGGTA+TGG 0.464087 2.3:+39126272 None:intergenic
TAGATTTCCTACAGGCAGAT+AGG 0.468461 2.3:-39125632 MS.gene68682:CDS
TCTTGATCACGAACCCTGTC+AGG 0.479690 2.3:+39126163 None:intergenic
CAATGCTCCTTGGTGCTCCT+AGG 0.482406 2.3:+39124755 None:intergenic
CAGTAATATAATTTGCATAC+TGG 0.483314 2.3:+39124991 None:intergenic
GAACGATCACGAACCATGTC+AGG 0.488273 2.3:+39126185 None:intergenic
TCCTTCATGAACAGACTAGC+AGG 0.490781 2.3:-39125692 MS.gene68682:intron
CATGTATTCCTCACTCCTGC+AGG 0.503599 2.3:-39127402 MS.gene68682:intron
ACATCCTGCTGCAAATCCTT+GGG 0.505522 2.3:+39125867 None:intergenic
ATGACAGAGTCCACAAAGAA+AGG 0.511144 2.3:-39126087 MS.gene68682:CDS
TCCTTGGTGCTCCTAGGCCA+AGG 0.512421 2.3:+39124761 None:intergenic
CAAGATTTCGACCTAATCAA+AGG 0.526303 2.3:-39126145 MS.gene68682:CDS
ATAATCTTCAGAGACTAGTA+AGG 0.528473 2.3:-39125048 MS.gene68682:intron
GGTTCCCAAGGATTTGCAGC+AGG 0.533479 2.3:-39125871 MS.gene68682:CDS
TGGATGCACTGTTGACGGTA+AGG 0.533820 2.3:-39125892 MS.gene68682:CDS
GTTCGTGATCGTTCCTGACA+GGG 0.536498 2.3:-39126176 MS.gene68682:CDS
TCATAACCAGCAATGCTCCT+TGG 0.537355 2.3:+39124745 None:intergenic
CGATCCAGCTTCAAAACCAT+TGG 0.537499 2.3:-39124916 MS.gene68682:CDS
AGGAAATTCAGGGTGTGTGT+TGG 0.546733 2.3:-39125912 MS.gene68682:intron
GCAATTTCTACTCAATCAAA+CGG 0.549104 2.3:-39126243 MS.gene68682:CDS
ACTGTGTCAAAATCCAAAAG+AGG 0.551073 2.3:+39126334 None:intergenic
CCATTCAACAAAAGCACCAA+TGG 0.551134 2.3:+39124900 None:intergenic
TGTGTTGGATGCACTGTTGA+CGG 0.575637 2.3:-39125897 MS.gene68682:CDS
CCTTGGTGCTCCTAGGCCAA+GGG 0.575704 2.3:+39124762 None:intergenic
TTTCTACTCAATCAAACGGC+AGG 0.588712 2.3:-39126239 MS.gene68682:CDS
CAAACAATCTTGCAAAACAA+AGG 0.594831 2.3:-39126111 MS.gene68682:CDS
TGTATATACCTGCAGGAGTG+AGG 0.597606 2.3:+39127394 None:intergenic
TGTGTGTCTAGATTTCCTAC+AGG 0.601691 2.3:-39125640 MS.gene68682:CDS
TGTTGACGGTAAGGTTCCCA+AGG 0.602023 2.3:-39125883 MS.gene68682:CDS
CAGTGAGTATCTGGTATCTG+TGG 0.618453 2.3:-39126315 MS.gene68682:CDS
CACATCGGAGGTTACATCGA+AGG 0.628243 2.3:+39125659 None:intergenic
GATGCAGCCTATCTGCCTGT+AGG 0.632609 2.3:+39125625 None:intergenic
GTATGCAAATTATATTACTG+TGG 0.665751 2.3:-39124988 MS.gene68682:CDS
TAGGAAATCTAGACACACAT+CGG 0.677280 2.3:+39125644 None:intergenic
CCCTTGGCCTAGGAGCACCA+AGG 0.693522 2.3:-39124762 MS.gene68682:CDS
GAAATCTAGACACACATCGG+AGG 0.703734 2.3:+39125647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr2.3:39125330-39125349 MS.gene68682:intron 0.0%
!! TATATATATATATATATATA+GGG - chr2.3:39125331-39125350 MS.gene68682:intron 0.0%
!! AATAGATAATAATTGATATT+TGG - chr2.3:39125521-39125540 MS.gene68682:intron 10.0%
!! AATTATTTATGTTATAAAAG+GGG - chr2.3:39126769-39126788 MS.gene68682:intron 10.0%
!! CAATTATTTATGTTATAAAA+GGG - chr2.3:39126768-39126787 MS.gene68682:intron 10.0%
!! TCAATTATTTATGTTATAAA+AGG - chr2.3:39126767-39126786 MS.gene68682:intron 10.0%
!! AACTAAAAAGTAAGAAATTA+TGG - chr2.3:39126098-39126117 MS.gene68682:CDS 15.0%
!! AGTTTAGACTATAATAAATT+TGG + chr2.3:39125491-39125510 None:intergenic 15.0%
!! TATGCAAATGATAATATATT+CGG - chr2.3:39127274-39127293 MS.gene68682:intron 15.0%
!! TTGGAAAGAAAAAAAAATAA+GGG - chr2.3:39125540-39125559 MS.gene68682:intron 15.0%
!! TTTGGAAAGAAAAAAAAATA+AGG - chr2.3:39125539-39125558 MS.gene68682:intron 15.0%
!!! ATCTACTAATTTAAAATACT+TGG + chr2.3:39126363-39126382 None:intergenic 15.0%
!!! TCTACTAATTTAAAATACTT+GGG + chr2.3:39126362-39126381 None:intergenic 15.0%
!! ATAATTGAATAGTAAACGTA+CGG + chr2.3:39126755-39126774 None:intergenic 20.0%
!! ATATATGAACAGAAAAAGAA+AGG + chr2.3:39126576-39126595 None:intergenic 20.0%
!! ATTAGCATTAAATACAAAAC+TGG + chr2.3:39126960-39126979 None:intergenic 20.0%
!! TAAAAAAATCACGAAATTTG+TGG - chr2.3:39125192-39125211 MS.gene68682:intron 20.0%
!! TAGACTATAATAAATTTGGT+GGG + chr2.3:39125487-39125506 None:intergenic 20.0%
!! TTAGACTATAATAAATTTGG+TGG + chr2.3:39125488-39125507 None:intergenic 20.0%
!!! AAACTAATGTGAAAAAGTAT+AGG + chr2.3:39125252-39125271 None:intergenic 20.0%
!!! AACTAATGTGAAAAAGTATA+GGG + chr2.3:39125251-39125270 None:intergenic 20.0%
!!! AATAGAAAAGTTTTCTATCT+TGG + chr2.3:39127181-39127200 None:intergenic 20.0%
!!! ACATTTTATATCCTTCAAAT+TGG + chr2.3:39126853-39126872 None:intergenic 20.0%
!!! TTCTAGATTTTTTTTTTCTC+TGG - chr2.3:39126826-39126845 MS.gene68682:intron 20.0%
!!! TTTTTTTTTGGGATTTTGAA+GGG - chr2.3:39127338-39127357 MS.gene68682:intron 20.0%
!!! TTTTTTTTTTGGGATTTTGA+AGG - chr2.3:39127337-39127356 MS.gene68682:intron 20.0%
! AAATTACTGTTCTATTGAGA+TGG + chr2.3:39126896-39126915 None:intergenic 25.0%
! AATGAGTGTAAGTAACTATT+AGG + chr2.3:39127014-39127033 None:intergenic 25.0%
! ATCTTAAATTTGTCAAGTGT+TGG - chr2.3:39124827-39124846 MS.gene68682:intron 25.0%
! CTATAACAGAAGAGAAATAT+TGG + chr2.3:39126984-39127003 None:intergenic 25.0%
! GAATGCTAAATCAAAGATTA+AGG + chr2.3:39126614-39126633 None:intergenic 25.0%
! GTATGCAAATTATATTACTG+TGG - chr2.3:39127148-39127167 MS.gene68682:intron 25.0%
! TATTTATGTTATAAAAGGGG+TGG - chr2.3:39126772-39126791 MS.gene68682:intron 25.0%
! TCATGATAAAACCTTTGATT+AGG + chr2.3:39126005-39126024 None:intergenic 25.0%
! TCTCTCAATGAACTAATTAA+CGG - chr2.3:39124777-39124796 MS.gene68682:CDS 25.0%
! TGATAATAATCCCTAACAAA+GGG - chr2.3:39125043-39125062 MS.gene68682:intron 25.0%
!! AAATTTGAAGTGATAATCAC+AGG - chr2.3:39125564-39125583 MS.gene68682:intron 25.0%
!! ACACTTGACAAATTTAAGAT+CGG + chr2.3:39124827-39124846 None:intergenic 25.0%
!! CAGTAATATAATTTGCATAC+TGG + chr2.3:39127148-39127167 None:intergenic 25.0%
!! GTATGTTTAATTTAGTGTGA+AGG - chr2.3:39126204-39126223 MS.gene68682:CDS 25.0%
!! TAATCTTTGATTTAGCATTC+TGG - chr2.3:39126614-39126633 MS.gene68682:intron 25.0%
!! TATTCAAGTATTTTGCAATG+TGG + chr2.3:39126667-39126686 None:intergenic 25.0%
!!! TCGTGATTTTTTTACAAAGA+GGG + chr2.3:39125186-39125205 None:intergenic 25.0%
!!! TTCGTGATTTTTTTACAAAG+AGG + chr2.3:39125187-39125206 None:intergenic 25.0%
AATGCATCAAGTGTATATAC+CGG + chr2.3:39126539-39126558 None:intergenic 30.0%
AGTTTGAGCTTCTAATTTCA+AGG + chr2.3:39126409-39126428 None:intergenic 30.0%
ATAATCTTCAGAGACTAGTA+AGG - chr2.3:39127088-39127107 MS.gene68682:intron 30.0%
ATTTAGTGTGAAGGAAATTC+AGG - chr2.3:39126213-39126232 MS.gene68682:CDS 30.0%
CAAACAATCTTGCAAAACAA+AGG - chr2.3:39126025-39126044 MS.gene68682:intron 30.0%
GCAATTTCTACTCAATCAAA+CGG - chr2.3:39125893-39125912 MS.gene68682:CDS 30.0%
GTGATAATAATCCCTAACAA+AGG - chr2.3:39125042-39125061 MS.gene68682:intron 30.0%
GTTTGAGCTTCTAATTTCAA+GGG + chr2.3:39126408-39126427 None:intergenic 30.0%
TTACAAAGAGGGAGAAATTA+AGG + chr2.3:39125175-39125194 None:intergenic 30.0%
TTTAGTGTGAAGGAAATTCA+GGG - chr2.3:39126214-39126233 MS.gene68682:CDS 30.0%
! ACTTTTCTATTATTTCGTCG+AGG - chr2.3:39127190-39127209 MS.gene68682:intron 30.0%
! ATTGCAGCTTTTTGTAAATC+TGG + chr2.3:39125878-39125897 None:intergenic 30.0%
! TACTGGTCAAAATCTACTTT+TGG + chr2.3:39127131-39127150 None:intergenic 30.0%
! TTGTTAGTCTAGTAATCAAG+TGG - chr2.3:39124898-39124917 MS.gene68682:CDS 30.0%
!! GAGCATCGTATTATGAATTT+TGG + chr2.3:39125220-39125239 None:intergenic 30.0%
!! GGTAAGGTAGTATTGATTAA+CGG + chr2.3:39125644-39125663 None:intergenic 30.0%
ACTGGACAAAACGAACTAAA+CGG + chr2.3:39126942-39126961 None:intergenic 35.0%
ACTGTGTCAAAATCCAAAAG+AGG + chr2.3:39125805-39125824 None:intergenic 35.0%
ATACCCTTCAAGTCAATGTT+CGG + chr2.3:39125672-39125691 None:intergenic 35.0%
ATTAGTTCATTGAGAGAGAG+TGG + chr2.3:39124774-39124793 None:intergenic 35.0%
CAAGATTTCGACCTAATCAA+AGG - chr2.3:39125991-39126010 MS.gene68682:intron 35.0%
CTCTTCACAACAACATTGTA+GGG - chr2.3:39126705-39126724 MS.gene68682:intron 35.0%
GATACACGTATGAAATTGCA+AGG - chr2.3:39125083-39125102 MS.gene68682:intron 35.0%
GCTAAATCAAAGATTAAGGC+AGG + chr2.3:39126610-39126629 None:intergenic 35.0%
TAGGAAATCTAGACACACAT+CGG + chr2.3:39126495-39126514 None:intergenic 35.0%
TATATTCGGATGTAAACCAC+TGG - chr2.3:39127288-39127307 MS.gene68682:intron 35.0%
TGGAGTTTAGAAGAATACTG+TGG - chr2.3:39126792-39126811 MS.gene68682:intron 35.0%
TTAGCATTCTGGTAAGAAGA+TGG - chr2.3:39126625-39126644 MS.gene68682:intron 35.0%
TTAGTTCATTGAGAGAGAGT+GGG + chr2.3:39124773-39124792 None:intergenic 35.0%
TTGAAGTGATAATCACAGGT+AGG - chr2.3:39125568-39125587 MS.gene68682:intron 35.0%
! AGACGTTTTCCTATTTGAGT+GGG + chr2.3:39125410-39125429 None:intergenic 35.0%
! TAGACGTTTTCCTATTTGAG+TGG + chr2.3:39125411-39125430 None:intergenic 35.0%
! TTGTAAATCTGGAGTAGGTA+TGG + chr2.3:39125867-39125886 None:intergenic 35.0%
! TTTTCTCTGGTCCAATTTGA+AGG - chr2.3:39126839-39126858 MS.gene68682:intron 35.0%
!! AAATCTACTTTTGGCTGATC+AGG + chr2.3:39127122-39127141 None:intergenic 35.0%
!! ATTTTGACACAGTGAGTATC+TGG - chr2.3:39125812-39125831 MS.gene68682:intron 35.0%
!! GCTTTTTGTAAATCTGGAGT+AGG + chr2.3:39125872-39125891 None:intergenic 35.0%
!!! TAGTTGCTGTTTTAGTTCAG+AGG - chr2.3:39124854-39124873 MS.gene68682:intron 35.0%
ACATTGTAGGGATCTCACAT+TGG - chr2.3:39126717-39126736 MS.gene68682:intron 40.0%
ACTGAAAGCTACCCTTTGTT+AGG + chr2.3:39125057-39125076 None:intergenic 40.0%
ATGACAGAGTCCACAAAGAA+AGG - chr2.3:39126049-39126068 MS.gene68682:intron 40.0%
CTGAAAGCTACCCTTTGTTA+GGG + chr2.3:39125056-39125075 None:intergenic 40.0%
CTTCAAGTCAATGTTCGGTT+GGG + chr2.3:39125667-39125686 None:intergenic 40.0%
GCTCTTCACAACAACATTGT+AGG - chr2.3:39126704-39126723 MS.gene68682:intron 40.0%
TAACAAAGGGTAGCTTTCAG+TGG - chr2.3:39125056-39125075 MS.gene68682:intron 40.0%
TACAACACACCCACTCAAAT+AGG - chr2.3:39125398-39125417 MS.gene68682:intron 40.0%
TAGATTTCCTACAGGCAGAT+AGG - chr2.3:39126504-39126523 MS.gene68682:intron 40.0%
TAGTCACGTTCCTTTCTTTG+TGG + chr2.3:39126062-39126081 None:intergenic 40.0%
TGTGTGTCTAGATTTCCTAC+AGG - chr2.3:39126496-39126515 MS.gene68682:intron 40.0%
TGTTGTTGTGAAGAGCTTTG+TGG + chr2.3:39126700-39126719 None:intergenic 40.0%
TTCAAGTCAATGTTCGGTTG+GGG + chr2.3:39125666-39125685 None:intergenic 40.0%
TTTCTACTCAATCAAACGGC+AGG - chr2.3:39125897-39125916 MS.gene68682:CDS 40.0%
! ATAGTAAACGTACGGACTAC+AGG + chr2.3:39126747-39126766 None:intergenic 40.0%
! GCAGATTGGAAATCCTCTTT+TGG - chr2.3:39125789-39125808 MS.gene68682:intron 40.0%
! GCTTTTGTTGAATGGAGGTA+AGG - chr2.3:39127244-39127263 MS.gene68682:intron 40.0%
!! CAACCGAACATTGACTTGAA+GGG - chr2.3:39125666-39125685 MS.gene68682:CDS 40.0%
!! CATTGACTTGAAGGGTATTG+CGG - chr2.3:39125674-39125693 MS.gene68682:CDS 40.0%
!! CCATTCAACAAAAGCACCAA+TGG + chr2.3:39127239-39127258 None:intergenic 40.0%
!! CCATTGGTGCTTTTGTTGAA+TGG - chr2.3:39127236-39127255 MS.gene68682:intron 40.0%
!! TTGGTGCTTTTGTTGAATGG+AGG - chr2.3:39127239-39127258 MS.gene68682:intron 40.0%
!!! CAATGGTTTTGAAGCTGGAT+CGG + chr2.3:39127222-39127241 None:intergenic 40.0%
!!! TTTTGGGATTTTGAAGGGCT+TGG - chr2.3:39127343-39127362 MS.gene68682:intron 40.0%
ACATCCTGCTGCAAATCCTT+GGG + chr2.3:39126272-39126291 None:intergenic 45.0%
AGGAAATTCAGGGTGTGTGT+TGG - chr2.3:39126224-39126243 MS.gene68682:CDS 45.0%
ATCAAACGGCAGGAACGAAT+TGG - chr2.3:39125907-39125926 MS.gene68682:intron 45.0%
ATCTGGTATCTGTGGTCTCA+TGG - chr2.3:39125829-39125848 MS.gene68682:intron 45.0%
CAATCTGCAAGTGCAAACAC+AGG + chr2.3:39125777-39125796 None:intergenic 45.0%
CAGTGAGTATCTGGTATCTG+TGG - chr2.3:39125821-39125840 MS.gene68682:intron 45.0%
CCTTCAAGTCAATGTTCGGT+TGG + chr2.3:39125668-39125687 None:intergenic 45.0%
CGAATTTCACGTTCCTGACA+TGG - chr2.3:39125938-39125957 MS.gene68682:intron 45.0%
CGATCCAGCTTCAAAACCAT+TGG - chr2.3:39127220-39127239 MS.gene68682:intron 45.0%
CTGTGTTTGCACTTGCAGAT+TGG - chr2.3:39125775-39125794 MS.gene68682:intron 45.0%
GAAATCTAGACACACATCGG+AGG + chr2.3:39126492-39126511 None:intergenic 45.0%
TCAAGTCAATGTTCGGTTGG+GGG + chr2.3:39125665-39125684 None:intergenic 45.0%
TCATAACCAGCAATGCTCCT+TGG + chr2.3:39127394-39127413 None:intergenic 45.0%
TCCTTCATGAACAGACTAGC+AGG - chr2.3:39126444-39126463 MS.gene68682:intron 45.0%
TGTATATACCTGCAGGAGTG+AGG + chr2.3:39124745-39124764 None:intergenic 45.0%
TGTGTTGGATGCACTGTTGA+CGG - chr2.3:39126239-39126258 MS.gene68682:CDS 45.0%
! ACCTGCTAGTCTGTTCATGA+AGG + chr2.3:39126448-39126467 None:intergenic 45.0%
! AGATCAGATCAAAGCACCAG+TGG + chr2.3:39127307-39127326 None:intergenic 45.0%
!! CCAACCGAACATTGACTTGA+AGG - chr2.3:39125665-39125684 MS.gene68682:CDS 45.0%
!!! AGCACCAATGGTTTTGAAGC+TGG + chr2.3:39127227-39127246 None:intergenic 45.0%
!! ATATATATATATATATATAG+GGG - chr2.3:39125370-39125389 MS.gene68682:intron 5.0%
!! TATTATTATTATTATTATTC+AGG - chr2.3:39124981-39125000 MS.gene68682:CDS 5.0%
!!! TACTTTTTTTTTTTTTTTTT+GGG - chr2.3:39127327-39127346 MS.gene68682:intron 5.0%
!!! TTACTTTTTTTTTTTTTTTT+TGG - chr2.3:39127326-39127345 MS.gene68682:intron 5.0%
!!! TTTATTTTAATTTCAAAATA+AGG - chr2.3:39124928-39124947 MS.gene68682:CDS 5.0%
CAAAGGGTAGCTTTCAGTGG+TGG - chr2.3:39125059-39125078 MS.gene68682:intron 50.0%
CACATCCTGCTGCAAATCCT+TGG + chr2.3:39126273-39126292 None:intergenic 50.0%
CACATCGGAGGTTACATCGA+AGG + chr2.3:39126480-39126499 None:intergenic 50.0%
GAACGATCACGAACCATGTC+AGG + chr2.3:39125954-39125973 None:intergenic 50.0%
GTTCGTGATCGTTCCTGACA+GGG - chr2.3:39125960-39125979 MS.gene68682:intron 50.0%
TCAATGTTCGGTTGGGGGTA+AGG + chr2.3:39125660-39125679 None:intergenic 50.0%
TCATTGAGAGAGAGTGGGAG+AGG + chr2.3:39124768-39124787 None:intergenic 50.0%
TCTTGATCACGAACCCTGTC+AGG + chr2.3:39125976-39125995 None:intergenic 50.0%
TGGATGCACTGTTGACGGTA+AGG - chr2.3:39126244-39126263 MS.gene68682:CDS 50.0%
TGTTGACGGTAAGGTTCCCA+AGG - chr2.3:39126253-39126272 MS.gene68682:CDS 50.0%
! GGAGAGGTGTATATACCTGC+AGG + chr2.3:39124752-39124771 None:intergenic 50.0%
GATGCAGCCTATCTGCCTGT+AGG + chr2.3:39126514-39126533 None:intergenic 55.0%
GGCAGATAGGCTGCATCATC+CGG - chr2.3:39126517-39126536 MS.gene68682:intron 55.0%
GGTTCCCAAGGATTTGCAGC+AGG - chr2.3:39126265-39126284 MS.gene68682:CDS 55.0%
GGTTCGTGATCGTTCCTGAC+AGG - chr2.3:39125959-39125978 MS.gene68682:intron 55.0%
TGGATGCACTGTTGACGGCA+AGG - chr2.3:39126334-39126353 MS.gene68682:CDS 55.0%
!! CAATGCTCCTTGGTGCTCCT+AGG + chr2.3:39127384-39127403 None:intergenic 55.0%
GGTTGCTCTTCCCTTGGCCT+AGG - chr2.3:39127364-39127383 MS.gene68682:intron 60.0%
! GGGCTTGGTTGCTCTTCCCT+TGG - chr2.3:39127358-39127377 MS.gene68682:intron 60.0%
!! CCTTGGTGCTCCTAGGCCAA+GGG + chr2.3:39127377-39127396 None:intergenic 60.0%
!! GGAGCACCAAGGAGCATTGC+TGG - chr2.3:39127385-39127404 MS.gene68682:intron 60.0%
!! TCCTTGGTGCTCCTAGGCCA+AGG + chr2.3:39127378-39127397 None:intergenic 60.0%
!! CCCTTGGCCTAGGAGCACCA+AGG - chr2.3:39127374-39127393 MS.gene68682:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 39124735 39127423 39124735 ID=MS.gene68682
chr2.3 mRNA 39124735 39127423 39124735 ID=MS.gene68682.t1;Parent=MS.gene68682
chr2.3 exon 39127403 39127423 39127403 ID=MS.gene68682.t1.exon1;Parent=MS.gene68682.t1
chr2.3 CDS 39127403 39127423 39127403 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39126052 39126365 39126052 ID=MS.gene68682.t1.exon2;Parent=MS.gene68682.t1
chr2.3 CDS 39126052 39126365 39126052 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39125869 39125923 39125869 ID=MS.gene68682.t1.exon3;Parent=MS.gene68682.t1
chr2.3 CDS 39125869 39125923 39125869 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39125620 39125700 39125620 ID=MS.gene68682.t1.exon4;Parent=MS.gene68682.t1
chr2.3 CDS 39125620 39125700 39125620 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39125523 39125529 39125523 ID=MS.gene68682.t1.exon5;Parent=MS.gene68682.t1
chr2.3 CDS 39125523 39125529 39125523 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39124898 39125059 39124898 ID=MS.gene68682.t1.exon6;Parent=MS.gene68682.t1
chr2.3 CDS 39124898 39125059 39124898 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
chr2.3 exon 39124735 39124799 39124735 ID=MS.gene68682.t1.exon7;Parent=MS.gene68682.t1
chr2.3 CDS 39124735 39124799 39124735 ID=cds.MS.gene68682.t1;Parent=MS.gene68682.t1
Gene Sequence

>MS.gene68682

ATGTATTCCTCACTCCTGCAGGTATATACACCTCTCCCACTCTCTCTCAATGAACTAATTAACGGATCATATTTGATTTGCTAATATTTCCGATCTTAAATTTGTCAAGTGTTGGTTCTTAGTTGCTGTTTTAGTTCAGAGGTAGTTTTAGCTTTTTCTATAGTTGTTAGTCTAGTAATCAAGTGGATTGAGATTTATTTTAATTTCAAAATAAGGTTTTATGAGAGACTGTAATTGATTAATTATTATTATTATTATTATTATTCAGGTTATGTCTTCTCTAATTGTGTTCAAAAGAAGAAAAAAAGTGATAATAATCCCTAACAAAGGGTAGCTTTCAGTGGTGGAGATACACGTATGAAATTGCAAGGTTAGTGATACATGTATTGATTTTTTTTTTGTCAAAAAAATGTATTGATTTATTTATGAACTTTTTTCCTTAATTTCTCCCTCTTTGTAAAAAAATCACGAAATTTGTGGTACCAAAATTCATAATACGATGCTCAACGAAATCCCTATACTTTTTCACATTAGTTTGCTGCATATCAAGACTAAAAAACGTCTTATCGTTTCTATTTTTATATATAATGTCAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGGGAATGCTACAACACACCCACTCAAATAGGAAAACGTCTAAATATATTCATGTCATGTTTTTTTGTTTGAGTTAGATAATCATCTCTCAGACTCCCACCAAATTTATTATAGTCTAAACTAGAAAATATTAATAGATAATAATTGATATTTGGAAAGAAAAAAAAATAAGGGAAAATTTGAAGTGATAATCACAGGTAGGTAGTATATCTTTATTAAATAAATTATTAGTATTTTTGTTATGTTGAATCACCGTTAATCAATACTACCTTACCCCCAACCGAACATTGACTTGAAGGGTATTGCGGTCAATGCACACATGAGTATTTTCTAATTATTATAGACTAAAAAATATGAATGTTTTATAATATTGATAATGCTGATTCCTGTGTTTGCACTTGCAGATTGGAAATCCTCTTTTGGATTTTGACACAGTGAGTATCTGGTATCTGTGGTCTCATGGTCTCATAAATGACCATACCTACTCCAGATTTACAAAAAGCTGCAATTTCTACTCAATCAAACGGCAGGAACGAATTGGTAATTTCTCGAATTTCACGTTCCTGACATGGTTCGTGATCGTTCCTGACAGGGTTCGTGATCAAGATTTCGACCTAATCAAAGGTTTTATCATGACAAACAATCTTGCAAAACAAAGGAATGACAGAGTCCACAAAGAAAGGAACGTGACTATCAATCTCAAAGTGAAAACTAAAAAGTAAGAAATTATGGTTGTAGAGTGTGATGCATTTAAAATGTTTAAAATAAAGTGTGTTTGTAGTATTATGTGTTAAAAGTTGTCTAGTGTGAAGTGTGTATGTTTAATTTAGTGTGAAGGAAATTCAGGGTGTGTGTTGGATGCACTGTTGACGGTAAGGTTCCCAAGGATTTGCAGCAGGATGTGTGTATGTTTAATTTAGTGTGAAGGAAATTCAGGGTGTGTGTTGGATGCACTGTTGACGGCAAGGTTCCCAAGTATTTTAAATTAGTAGATACATAATATTTCTAAATTTCTTCCCTTGAAATTAGAAGCTCAAACTCTAACATAAGCTTTATCCTTCATGAACAGACTAGCAGGTTCATTGATACCTTCGATGTAACCTCCGATGTGTGTCTAGATTTCCTACAGGCAGATAGGCTGCATCATCCGGTATATACACTTGATGCATTTTTTTTTTATTCTTCCTTTCTTTTTCTGTTCATATATATTCTTATGCGCCTGCCTTAATCTTTGATTTAGCATTCTGGTAAGAAGATGGAAGTTTGTCTAGAAGACCACATTGCAAAATACTTGAATAGATAAGATGTCCACAAAGCTCTTCACAACAACATTGTAGGGATCTCACATTGGTCGACCTGTAGTCCGTACGTTTACTATTCAATTATTTATGTTATAAAAGGGGTGGAGTTTAGAAGAATACTGTGGTTCAATTTCATTTCTAGATTTTTTTTTTCTCTGGTCCAATTTGAAGGATATAAAATGTAGCAACAAATTTTGTTTGTTCCATCTCAATAGAACAGTAATTTCATTCTAGTTGATTTTATTTCATCCGTTTAGTTCGTTTTGTCCAGTTTTGTATTTAATGCTAATACCAATATTTCTCTTCTGTTATAGTGTTCTGCCTAATAGTTACTTACACTCATTGTTAGCTTAAGCTTATCTCTGTCATTTTTGTCGCTAATTTTTGCTTTTATGTTAATAATCTTCAGAGACTAGTAAGGTAACTTTACCTGATCAGCCAAAAGTAGATTTTGACCAGTATGCAAATTATATTACTGTGGATGAAATCCAAGATAGAAAACTTTTCTATTATTTCGTCGAGGCAAAGACCGATCCAGCTTCAAAACCATTGGTGCTTTTGTTGAATGGAGGTAAGGATTTTATTATGCAAATGATAATATATTCGGATGTAAACCACTGGTGCTTTGATCTGATCTTACTTTTTTTTTTTTTTTTTGGGATTTTGAAGGGCTTGGTTGCTCTTCCCTTGGCCTAGGAGCACCAAGGAGCATTGCTGGTTATGATGATCATTAA
Protein sequence

>MS.gene68682.t1

MYSSLLQIGNPLLDFDTVSIWYLWSHGLINDHTYSRFTKSCNFYSIKRQERIGNFSNFTFLTWFVIVPDRVRDQDFDLIKGFIMTNNLAKQRNDRVHKERNVTINLKVKTKKVCVGCTVDGKVPKDLQQDTSRFIDTFDVTSDVCLDFLQADRLHHPHSETSKVTLPDQPKVDFDQYANYITVDEIQDRKLFYYFVEAKTDPASKPLVLLLNGGLGCSSLGLGAPRSIAGYDDH