Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68718.t1 | XP_024635233.1 | 96.2 | 442 | 6 | 1 | 1 | 431 | 1 | 442 | 5.20E-244 | 853.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68718.t1 | Q9XGM8 | 69.8 | 441 | 122 | 1 | 1 | 430 | 1 | 441 | 8.9e-184 | 644.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68718.t1 | A0A1S2Y7Q7 | 88.0 | 442 | 42 | 1 | 1 | 431 | 1 | 442 | 9.6e-224 | 785.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050439 | MS.gene68718 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene053811 | MS.gene68718 | 0.801715 | 7.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68718.t1 | MTR_3g118520 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| MS.gene68718.t1 | MTR_3g118525 | 98.438 | 128 | 2 | 0 | 304 | 431 | 15 | 142 | 2.39e-86 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68718.t1 | AT4G38240 | 70.930 | 430 | 125 | 0 | 1 | 430 | 1 | 430 | 0.0 | 667 |
| MS.gene68718.t1 | AT4G38240 | 69.841 | 441 | 122 | 1 | 1 | 430 | 1 | 441 | 0.0 | 665 |
| MS.gene68718.t1 | AT4G38240 | 69.841 | 441 | 122 | 1 | 1 | 430 | 1 | 441 | 0.0 | 665 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACATTGCTCAACAATT+TGG | 0.214206 | 3.2:+93289207 | MS.gene68718:CDS |
| GGATATGCCTTCGGCCATTT+TGG | 0.228883 | 3.2:-93288164 | None:intergenic |
| TGAAGTAGCTTCAAAGATTC+TGG | 0.231515 | 3.2:-93289471 | None:intergenic |
| TATCGCTCGGACTTCTTTCC+TGG | 0.251249 | 3.2:+93288098 | MS.gene68718:CDS |
| TTTGGGAAATGGCGAAATTT+TGG | 0.251374 | 3.2:+93281559 | None:intergenic |
| TAAAGGAAATCTTGAAGAAA+TGG | 0.304704 | 3.2:-93282427 | None:intergenic |
| TATCCATTCTAGGTCCATTA+TGG | 0.306360 | 3.2:+93286853 | MS.gene68718:intron |
| TCTTCTCTTTGTTGCAGCCT+TGG | 0.315376 | 3.2:+93281596 | MS.gene68718:CDS |
| CTTGAACAAGAGACTTGATT+TGG | 0.319300 | 3.2:-93281993 | None:intergenic |
| TGGACTTCATTCAGCTTGAT+TGG | 0.364035 | 3.2:-93288849 | None:intergenic |
| TTATATGTTCTGCATACTTC+GGG | 0.365657 | 3.2:-93288487 | None:intergenic |
| GGGATGAACTATCACCAAAA+TGG | 0.369625 | 3.2:+93288150 | MS.gene68718:CDS |
| CCTGGCCTTTCAGTTTGAAC+CGG | 0.375663 | 3.2:-93286390 | None:intergenic |
| GTTTCGTCATGGAATGATAA+TGG | 0.381929 | 3.2:+93286878 | MS.gene68718:CDS |
| AATGGACTTGAGCTATTTGT+TGG | 0.383291 | 3.2:+93288971 | MS.gene68718:CDS |
| CCATGACGAAACAGCCATAA+TGG | 0.392943 | 3.2:-93286867 | None:intergenic |
| AATACCTGCGATACAAATAA+AGG | 0.398527 | 3.2:-93282444 | None:intergenic |
| CTTTGATTACTTTGAAGCTA+TGG | 0.412034 | 3.2:+93286713 | MS.gene68718:CDS |
| TCAAAGTAATCAAAGAAATC+AGG | 0.439796 | 3.2:-93286705 | None:intergenic |
| AAAGGAAATCTTGAAGAAAT+GGG | 0.442893 | 3.2:-93282426 | None:intergenic |
| ACGAAGCGTATATTCCTTGT+TGG | 0.443306 | 3.2:+93289447 | MS.gene68718:CDS |
| GTGCCTAGGACAGCTTATAA+AGG | 0.447968 | 3.2:+93289399 | MS.gene68718:CDS |
| GTTATATGTTCTGCATACTT+CGG | 0.455588 | 3.2:-93288488 | None:intergenic |
| GGTCATTACAAGTGGGCTCT+TGG | 0.466698 | 3.2:+93286524 | MS.gene68718:intron |
| GAAGTAGCTTCAAAGATTCT+GGG | 0.477829 | 3.2:-93289470 | None:intergenic |
| TCGGACTTCTTTCCTGGACT+AGG | 0.478118 | 3.2:+93288104 | MS.gene68718:CDS |
| GCGAAGTCTGCTCCAGAGAC+AGG | 0.486412 | 3.2:-93289123 | None:intergenic |
| AAATTCAGACGTCAAAAGTA+AGG | 0.488269 | 3.2:+93282604 | MS.gene68718:CDS |
| AGTGGCAGCTGTTGTCATCA+TGG | 0.497854 | 3.2:+93282262 | MS.gene68718:CDS |
| TAGTAAGCAATTAACTCTCC+TGG | 0.506538 | 3.2:-93286408 | None:intergenic |
| ATTTCCTTTATTTGTATCGC+AGG | 0.508351 | 3.2:+93282440 | MS.gene68718:CDS |
| TGCAGACGAACTTTATCGCT+CGG | 0.520518 | 3.2:+93288085 | MS.gene68718:intron |
| AACAAGGAATATACGCTTCG+TGG | 0.520785 | 3.2:-93289445 | None:intergenic |
| CTTGGTGTTCATCTACATCC+AGG | 0.522745 | 3.2:+93281614 | MS.gene68718:CDS |
| GGCTACATTCTTGCTCTCGA+CGG | 0.523455 | 3.2:-93281972 | None:intergenic |
| GTATGCAGAACATATAACTT+TGG | 0.523714 | 3.2:+93288493 | MS.gene68718:CDS |
| TGGTATATTTCAAGAGTGGA+AGG | 0.526230 | 3.2:+93289227 | MS.gene68718:CDS |
| GCCAGCATCCATCCTAGTCC+AGG | 0.526290 | 3.2:-93288116 | None:intergenic |
| CAGAATTGATAGTCCTCTCC+AGG | 0.527635 | 3.2:-93282304 | None:intergenic |
| ACTTCTTTCCTGGACTAGGA+TGG | 0.531658 | 3.2:+93288108 | MS.gene68718:CDS |
| TCCTGGACTAGGATGGATGC+TGG | 0.534970 | 3.2:+93288115 | MS.gene68718:CDS |
| CCATTATGGCTGTTTCGTCA+TGG | 0.538200 | 3.2:+93286867 | MS.gene68718:CDS |
| GAAGGTCGACTGGAAGTCAA+TGG | 0.538850 | 3.2:+93288953 | MS.gene68718:intron |
| AATCAAGCTGAATGAAGTCC+AGG | 0.541494 | 3.2:+93288851 | MS.gene68718:CDS |
| TTCTCGACTTACAACAAGAA+AGG | 0.541791 | 3.2:+93281947 | MS.gene68718:CDS |
| ACTCCTTTATAAGCTGTCCT+AGG | 0.545192 | 3.2:-93289402 | None:intergenic |
| ATGTAATCGTGCTGATTACC+TGG | 0.547620 | 3.2:+93282286 | MS.gene68718:CDS |
| TTGAGCCGGTTCAAACTGAA+AGG | 0.550180 | 3.2:+93286385 | MS.gene68718:CDS |
| GGATGCTGGCTAGATCTACA+TGG | 0.553110 | 3.2:+93288129 | MS.gene68718:CDS |
| CCGGTTCAAACTGAAAGGCC+AGG | 0.554999 | 3.2:+93286390 | MS.gene68718:CDS |
| GGACTTGAGCTATTTGTTGG+AGG | 0.555050 | 3.2:+93288974 | MS.gene68718:CDS |
| TGGAGCAGACTTCGCTCAGA+AGG | 0.556130 | 3.2:+93289131 | MS.gene68718:CDS |
| CGATGAGCTATCTCATATGC+AGG | 0.562275 | 3.2:+93282637 | MS.gene68718:CDS |
| ATGATGACAACAGCTGCCAC+TGG | 0.562931 | 3.2:-93282260 | None:intergenic |
| TGGATTGAATGAAGGTCGAC+TGG | 0.576838 | 3.2:+93288943 | MS.gene68718:intron |
| ACTTCCAGGATGGTGTGCCT+AGG | 0.576852 | 3.2:+93289385 | MS.gene68718:intron |
| AAGGCTGATTGATAAAGTCC+AGG | 0.584981 | 3.2:+93282141 | MS.gene68718:CDS |
| TTATCCAACCTCAGATGACA+TGG | 0.598293 | 3.2:+93286674 | MS.gene68718:intron |
| AATTTGGTATATTTCAAGAG+TGG | 0.599428 | 3.2:+93289223 | MS.gene68718:CDS |
| TATAAAGTATAAAGATCAGT+GGG | 0.600564 | 3.2:+93289179 | MS.gene68718:CDS |
| ATGTTCTGCATACTTCGGGT+CGG | 0.615835 | 3.2:-93288483 | None:intergenic |
| ACACATACTTATCCTTGTCA+AGG | 0.618408 | 3.2:-93286743 | None:intergenic |
| AACAGAGTCATCATTCTCGA+AGG | 0.620252 | 3.2:+93286572 | MS.gene68718:CDS |
| TTTCAGGAAAAGATGTACAA+AGG | 0.627774 | 3.2:+93282122 | MS.gene68718:intron |
| CAGAAGGCACGCAATATAGA+CGG | 0.629864 | 3.2:+93289147 | MS.gene68718:CDS |
| TCAAAGATTCTGGGCCAACA+AGG | 0.632429 | 3.2:-93289461 | None:intergenic |
| ATCGTGCTGATTACCTGGAG+AGG | 0.643089 | 3.2:+93282291 | MS.gene68718:CDS |
| GATCAGATTAGCTTGCAACA+AGG | 0.650241 | 3.2:+93281919 | MS.gene68718:CDS |
| ACTATCACCAAAATGGCCGA+AGG | 0.673152 | 3.2:+93288157 | MS.gene68718:CDS |
| GTATAAAGTATAAAGATCAG+TGG | 0.683838 | 3.2:+93289178 | MS.gene68718:CDS |
| GATGCTGGCTAGATCTACAT+GGG | 0.685395 | 3.2:+93288130 | MS.gene68718:CDS |
| TATGGCAACTCTCCTTGACA+AGG | 0.700285 | 3.2:+93286731 | MS.gene68718:CDS |
| AGATTAAAAGAGAATCACAA+AGG | 0.714494 | 3.2:+93288448 | MS.gene68718:intron |
| AATTACATACAGCAACAGCG+AGG | 0.779431 | 3.2:-93281766 | None:intergenic |
| CTGGATGTAGATGAACACCA+AGG | 0.780942 | 3.2:-93281613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 93281567 | 93289503 | 93281567 | ID=MS.gene68718 |
| chr3.2 | mRNA | 93281567 | 93289503 | 93281567 | ID=MS.gene68718.t1;Parent=MS.gene68718 |
| chr3.2 | exon | 93281567 | 93281635 | 93281567 | ID=MS.gene68718.t1.exon1;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93281567 | 93281635 | 93281567 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93281728 | 93281778 | 93281728 | ID=MS.gene68718.t1.exon2;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93281728 | 93281778 | 93281728 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93281874 | 93282024 | 93281874 | ID=MS.gene68718.t1.exon3;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93281874 | 93282024 | 93281874 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93282128 | 93282162 | 93282128 | ID=MS.gene68718.t1.exon4;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93282128 | 93282162 | 93282128 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93282257 | 93282333 | 93282257 | ID=MS.gene68718.t1.exon5;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93282257 | 93282333 | 93282257 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93282416 | 93282461 | 93282416 | ID=MS.gene68718.t1.exon6;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93282416 | 93282461 | 93282416 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93282596 | 93282658 | 93282596 | ID=MS.gene68718.t1.exon7;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93282596 | 93282658 | 93282596 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93286375 | 93286441 | 93286375 | ID=MS.gene68718.t1.exon8;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93286375 | 93286441 | 93286375 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93286525 | 93286593 | 93286525 | ID=MS.gene68718.t1.exon9;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93286525 | 93286593 | 93286525 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93286688 | 93286757 | 93286688 | ID=MS.gene68718.t1.exon10;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93286688 | 93286757 | 93286688 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93286865 | 93286926 | 93286865 | ID=MS.gene68718.t1.exon11;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93286865 | 93286926 | 93286865 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93288090 | 93288178 | 93288090 | ID=MS.gene68718.t1.exon12;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93288090 | 93288178 | 93288090 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93288460 | 93288522 | 93288460 | ID=MS.gene68718.t1.exon13;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93288460 | 93288522 | 93288460 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93288810 | 93288872 | 93288810 | ID=MS.gene68718.t1.exon14;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93288810 | 93288872 | 93288810 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93288957 | 93288995 | 93288957 | ID=MS.gene68718.t1.exon15;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93288957 | 93288995 | 93288957 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93289078 | 93289248 | 93289078 | ID=MS.gene68718.t1.exon16;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93289078 | 93289248 | 93289078 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| chr3.2 | exon | 93289393 | 93289503 | 93289393 | ID=MS.gene68718.t1.exon17;Parent=MS.gene68718.t1 |
| chr3.2 | CDS | 93289393 | 93289503 | 93289393 | ID=cds.MS.gene68718.t1;Parent=MS.gene68718.t1 |
| Gene Sequence |
| Protein sequence |