Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68805.t1 | XP_003603941.1 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 5.40E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68805.t1 | B9HRL7 | 78.4 | 306 | 66 | 0 | 7 | 312 | 1 | 306 | 1.7e-139 | 496.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68805.t1 | G7J743 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 3.9e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68805 | MS.gene039472 | PPI |
| MS.gene68805 | MS.gene23274 | PPI |
| MS.gene68805 | MS.gene003737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68805.t1 | MTR_3g116840 | 95.192 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 0.0 | 615 |
| MS.gene68805.t1 | MTR_3g111980 | 71.895 | 306 | 84 | 1 | 9 | 312 | 5 | 310 | 3.32e-165 | 462 |
| MS.gene68805.t1 | MTR_3g111990 | 69.079 | 304 | 94 | 0 | 9 | 312 | 5 | 308 | 9.54e-161 | 450 |
| MS.gene68805.t1 | MTR_5g020740 | 68.092 | 304 | 97 | 0 | 9 | 312 | 6 | 309 | 1.48e-156 | 440 |
| MS.gene68805.t1 | MTR_4g070370 | 66.887 | 302 | 100 | 0 | 9 | 310 | 8 | 309 | 2.42e-152 | 430 |
| MS.gene68805.t1 | MTR_4g070340 | 62.258 | 310 | 115 | 1 | 1 | 310 | 1 | 308 | 9.02e-145 | 411 |
| MS.gene68805.t1 | MTR_4g070340 | 61.290 | 310 | 113 | 2 | 1 | 310 | 1 | 303 | 1.37e-139 | 397 |
| MS.gene68805.t1 | MTR_5g020760 | 54.921 | 315 | 130 | 3 | 9 | 312 | 5 | 318 | 1.70e-118 | 343 |
| MS.gene68805.t1 | MTR_5g020800 | 54.603 | 315 | 131 | 3 | 9 | 312 | 5 | 318 | 3.85e-118 | 343 |
| MS.gene68805.t1 | MTR_4g070340 | 61.728 | 243 | 93 | 0 | 66 | 308 | 15 | 257 | 1.11e-113 | 330 |
| MS.gene68805.t1 | MTR_4g070360 | 49.346 | 306 | 153 | 1 | 9 | 312 | 4 | 309 | 3.45e-106 | 312 |
| MS.gene68805.t1 | MTR_5g020760 | 54.615 | 260 | 107 | 2 | 9 | 257 | 5 | 264 | 1.47e-96 | 286 |
| MS.gene68805.t1 | MTR_5g027290 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 4.07e-95 | 284 |
| MS.gene68805.t1 | MTR_8g071130 | 47.742 | 310 | 155 | 4 | 9 | 312 | 4 | 312 | 6.42e-95 | 283 |
| MS.gene68805.t1 | MTR_5g027240 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 1.51e-93 | 280 |
| MS.gene68805.t1 | MTR_3g008100 | 43.506 | 308 | 162 | 5 | 9 | 312 | 6 | 305 | 4.57e-85 | 258 |
| MS.gene68805.t1 | MTR_3g008140 | 44.590 | 305 | 162 | 5 | 9 | 312 | 6 | 304 | 1.54e-84 | 257 |
| MS.gene68805.t1 | MTR_3g007970 | 43.279 | 305 | 167 | 4 | 9 | 312 | 6 | 305 | 8.20e-83 | 253 |
| MS.gene68805.t1 | MTR_3g008100 | 42.532 | 308 | 158 | 5 | 9 | 312 | 6 | 298 | 5.23e-81 | 248 |
| MS.gene68805.t1 | MTR_1g093720 | 37.705 | 305 | 187 | 2 | 10 | 312 | 15 | 318 | 1.08e-68 | 218 |
| MS.gene68805.t1 | MTR_3g008100 | 41.089 | 202 | 107 | 5 | 9 | 206 | 6 | 199 | 2.45e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68805.t1 | AT4G39230 | 75.658 | 304 | 74 | 0 | 9 | 312 | 5 | 308 | 1.14e-175 | 488 |
| MS.gene68805.t1 | AT1G75280 | 67.869 | 305 | 95 | 2 | 9 | 311 | 6 | 309 | 1.41e-151 | 427 |
| MS.gene68805.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 6 | 310 | 2.55e-149 | 422 |
| MS.gene68805.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 33 | 337 | 1.19e-148 | 421 |
| MS.gene68805.t1 | AT1G75300 | 60.188 | 319 | 108 | 2 | 9 | 311 | 6 | 321 | 8.95e-137 | 390 |
| MS.gene68805.t1 | AT1G19540 | 59.355 | 310 | 122 | 2 | 7 | 312 | 1 | 310 | 4.65e-134 | 383 |
| MS.gene68805.t1 | AT1G19540 | 60.000 | 255 | 98 | 2 | 7 | 257 | 1 | 255 | 2.57e-105 | 308 |
| MS.gene68805.t1 | AT4G34540 | 47.697 | 304 | 154 | 1 | 9 | 312 | 8 | 306 | 9.52e-102 | 301 |
| MS.gene68805.t1 | AT1G32100 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 6.01e-84 | 256 |
| MS.gene68805.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
| MS.gene68805.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
Find 65 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGCTGCGCCGAATTC+TGG | 0.160415 | 3.2:-92368369 | None:intergenic |
| GCTCACTGTGTGTACATAAA+AGG | 0.206083 | 3.2:+92369708 | MS.gene68805:CDS |
| AATCTCAGACAAACTTATTA+AGG | 0.233599 | 3.2:-92369821 | None:intergenic |
| TCAATGATCTCGTATCTCTA+TGG | 0.304426 | 3.2:+92368725 | MS.gene68805:CDS |
| ATAGACAGCATCATATTTAA+TGG | 0.305042 | 3.2:-92369684 | None:intergenic |
| TTTGAAATTGATCCAACATT+TGG | 0.320418 | 3.2:+92369744 | MS.gene68805:CDS |
| AGATTCTTTCCTTCTGAATT+CGG | 0.325326 | 3.2:+92368287 | MS.gene68805:CDS |
| ACGGCATATGCACTCTTTGC+TGG | 0.343519 | 3.2:-92368341 | None:intergenic |
| ATCCTTGAATTTGTTGATGA+TGG | 0.347770 | 3.2:-92367762 | None:intergenic |
| TGCTTCAGAATCTGTTCCTC+TGG | 0.349482 | 3.2:-92368787 | None:intergenic |
| AACATTTCCAGCTTCTTTGA+TGG | 0.352360 | 3.2:-92368155 | None:intergenic |
| GTGTCAAGCAACTACTTTGC+TGG | 0.363642 | 3.2:+92368416 | MS.gene68805:CDS |
| GATCAATTTCAAAGTTAGTA+TGG | 0.379619 | 3.2:-92369734 | None:intergenic |
| CTCACTGTGTGTACATAAAA+GGG | 0.386311 | 3.2:+92369709 | MS.gene68805:CDS |
| TCTATATGATCATCAAAGTT+TGG | 0.394266 | 3.2:+92368051 | MS.gene68805:CDS |
| CAAAGAAGCTGGAAATGTTA+AGG | 0.420593 | 3.2:+92368159 | MS.gene68805:CDS |
| CGGTTACATCGGAAAGTTCA+TGG | 0.428326 | 3.2:+92367661 | MS.gene68805:CDS |
| AGGATAACAACTTTATCTCT+TGG | 0.434576 | 3.2:-92368482 | None:intergenic |
| ATCCATCATCAACAAATTCA+AGG | 0.437302 | 3.2:+92367760 | MS.gene68805:CDS |
| GCGCCGAATTCTGGCTTTAA+CGG | 0.452773 | 3.2:-92368360 | None:intergenic |
| ATCTCTGCCATCAAAGAAGC+TGG | 0.461263 | 3.2:+92368148 | MS.gene68805:CDS |
| AGAGATAAAGTTGTTATCCT+AGG | 0.472690 | 3.2:+92368485 | MS.gene68805:CDS |
| ATGCCGTTAAAGCCAGAATT+CGG | 0.486275 | 3.2:+92368357 | MS.gene68805:CDS |
| CAATGATCTCGTATCTCTAT+GGG | 0.490781 | 3.2:+92368726 | MS.gene68805:CDS |
| TCTCTATGGGAGAAGAAGAT+TGG | 0.494193 | 3.2:+92368739 | MS.gene68805:CDS |
| ACGTACAACAACAAGATTGA+CGG | 0.497659 | 3.2:-92367789 | None:intergenic |
| CTTTGGGGTTTCCATCTCCT+AGG | 0.498008 | 3.2:-92368502 | None:intergenic |
| ACAGTGGTGTATTTCACATC+AGG | 0.498107 | 3.2:-92369789 | None:intergenic |
| ATAACAACTTTATCTCTTGG+TGG | 0.500817 | 3.2:-92368479 | None:intergenic |
| GATGGATGATTTAGCAGGGT+TGG | 0.503796 | 3.2:-92367744 | None:intergenic |
| CAGATTCTGAAGCAAATTCA+AGG | 0.506368 | 3.2:+92368796 | MS.gene68805:CDS |
| TTGATGATGGATGATTTAGC+AGG | 0.525812 | 3.2:-92367749 | None:intergenic |
| GAGTTGAGTCTCGGATGAGA+AGG | 0.525951 | 3.2:-92367718 | None:intergenic |
| AGCTCCATGCTGTGATAAAG+AGG | 0.527862 | 3.2:-92368450 | None:intergenic |
| AAAGTTGTTATCCTAGGAGA+TGG | 0.536929 | 3.2:+92368491 | MS.gene68805:CDS |
| GTAGCTTCTACTCCAAATGT+TGG | 0.537034 | 3.2:-92369756 | None:intergenic |
| TTCTGAATTCGGAAATGATG+TGG | 0.539147 | 3.2:+92368298 | MS.gene68805:CDS |
| TCTCGGATGAGAAGGAAGGT+TGG | 0.539639 | 3.2:-92367710 | None:intergenic |
| ATCGGTGGCAGCGGTTACAT+CGG | 0.540698 | 3.2:+92367650 | MS.gene68805:CDS |
| GTGGAAGCTAGCGTCAAAGC+TGG | 0.545923 | 3.2:+92367683 | MS.gene68805:CDS |
| ACATCATTTCCGAATTCAGA+AGG | 0.559910 | 3.2:-92368296 | None:intergenic |
| CTACCCTCTTTATCACAGCA+TGG | 0.560618 | 3.2:+92368446 | MS.gene68805:CDS |
| TTGAAAGACAAGGCATTACC+TGG | 0.560825 | 3.2:-92368706 | None:intergenic |
| CAGAATTCGGCGCAGCATTG+AGG | 0.562868 | 3.2:+92368370 | MS.gene68805:CDS |
| CGGCGCAGCATTGAGGCAGA+AGG | 0.565766 | 3.2:+92368377 | MS.gene68805:CDS |
| TTTAAATTGCAATGGCAGGT+GGG | 0.575232 | 3.2:+92367600 | None:intergenic |
| TTGCTTGACACATAAGTGTA+CGG | 0.597039 | 3.2:-92368404 | None:intergenic |
| GGATGAGAAGGAAGGTTGGA+TGG | 0.597335 | 3.2:-92367706 | None:intergenic |
| TGATGATGGATGATTTAGCA+GGG | 0.603826 | 3.2:-92367748 | None:intergenic |
| AATTCGGAAATGATGTGGAT+CGG | 0.605620 | 3.2:+92368303 | MS.gene68805:CDS |
| ATTCTGTATATTAGACCACC+AGG | 0.614061 | 3.2:+92368688 | MS.gene68805:CDS |
| GGTTGGAAAGAGTTGAGTCT+CGG | 0.615631 | 3.2:-92367727 | None:intergenic |
| TGAAAGAATCTATGTTCCAG+AGG | 0.633249 | 3.2:+92368771 | MS.gene68805:CDS |
| GACAGCATCATATTTAATGG+AGG | 0.637215 | 3.2:-92369681 | None:intergenic |
| TGAGTCTCGGATGAGAAGGA+AGG | 0.639125 | 3.2:-92367714 | None:intergenic |
| CATCATATTTAATGGAGGCG+AGG | 0.648947 | 3.2:-92369676 | None:intergenic |
| GCTCCATGCTGTGATAAAGA+GGG | 0.649603 | 3.2:-92368449 | None:intergenic |
| TGATCTTGTCTTGAACACTC+AGG | 0.656329 | 3.2:-92368126 | None:intergenic |
| TACGAGATCATTGAAAGACA+AGG | 0.657957 | 3.2:-92368716 | None:intergenic |
| TCACTGTGTGTACATAAAAG+GGG | 0.662298 | 3.2:+92369710 | MS.gene68805:CDS |
| CATGCTGTGATAAAGAGGGT+AGG | 0.664558 | 3.2:-92368445 | None:intergenic |
| CTAGGAGATGGAAACCCCAA+AGG | 0.669328 | 3.2:+92368503 | MS.gene68805:CDS |
| ATTAAGGAACTCATCTACAG+TGG | 0.700053 | 3.2:-92369805 | None:intergenic |
| AAAGACAAGGCATTACCTGG+TGG | 0.724041 | 3.2:-92368703 | None:intergenic |
| TTACATCGGAAAGTTCATGG+TGG | 0.773819 | 3.2:+92367664 | MS.gene68805:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTATTTTAATAAAA+AGG | + | chr3.2:92369342-92369361 | MS.gene68805:intron | 0.0% |
| !!! | TATTAAAATAATAATTTTTA+TGG | - | chr3.2:92369339-92369358 | None:intergenic | 0.0% |
| !! | ATTAAATAAATAATTATTGG+TGG | - | chr3.2:92368977-92368996 | None:intergenic | 10.0% |
| !! | TTAAATAAATAATTATTGGT+GGG | - | chr3.2:92368976-92368995 | None:intergenic | 10.0% |
| !!! | CATTAAATTTTCTTACTAAT+AGG | + | chr3.2:92368566-92368585 | MS.gene68805:intron | 15.0% |
| !!! | GTGGTTTAATAATTTAATTT+TGG | + | chr3.2:92369641-92369660 | MS.gene68805:intron | 15.0% |
| !!! | TTCAATCTTTTAATAAACTA+CGG | - | chr3.2:92369063-92369082 | None:intergenic | 15.0% |
| !!! | TTTTAATAATAGTACCTAAT+AGG | + | chr3.2:92368901-92368920 | MS.gene68805:intron | 15.0% |
| !! | ATTGTGGAAAAAAAAATTGA+GGG | - | chr3.2:92369425-92369444 | None:intergenic | 20.0% |
| !! | TCTAACAAAAAGTCTTAAAT+GGG | + | chr3.2:92368949-92368968 | MS.gene68805:intron | 20.0% |
| !! | TTAATAAAAAGGTGATATGT+GGG | + | chr3.2:92369353-92369372 | MS.gene68805:intron | 20.0% |
| !! | TTTAATAAAAAGGTGATATG+TGG | + | chr3.2:92369352-92369371 | MS.gene68805:intron | 20.0% |
| !!! | AATATACAGAATTTTGTTCA+AGG | - | chr3.2:92368680-92368699 | None:intergenic | 20.0% |
| !!! | AGCAGTATTTAAGATTTTTA+AGG | - | chr3.2:92367928-92367947 | None:intergenic | 20.0% |
| !!! | ATAACAAGTTTTCTACAATA+CGG | + | chr3.2:92369180-92369199 | MS.gene68805:intron | 20.0% |
| !!! | ATTTAAGACTTTTTGTTAGA+GGG | - | chr3.2:92368949-92368968 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTTTCCACAAT+GGG | + | chr3.2:92369425-92369444 | MS.gene68805:intron | 20.0% |
| ! | ATAGACAGCATCATATTTAA+TGG | - | chr3.2:92369687-92369706 | None:intergenic | 25.0% |
| ! | ATTAAGACCTTATGCTTAAA+TGG | - | chr3.2:92369380-92369399 | None:intergenic | 25.0% |
| ! | CATTGTGGAAAAAAAAATTG+AGG | - | chr3.2:92369426-92369445 | None:intergenic | 25.0% |
| ! | CTCTAACAAAAAGTCTTAAA+TGG | + | chr3.2:92368948-92368967 | MS.gene68805:intron | 25.0% |
| ! | GATCAATTTCAAAGTTAGTA+TGG | - | chr3.2:92369737-92369756 | None:intergenic | 25.0% |
| ! | TCTATATGATCATCAAAGTT+TGG | + | chr3.2:92368051-92368070 | MS.gene68805:CDS | 25.0% |
| ! | TGTAGAAATTAAACAAGACA+AGG | + | chr3.2:92369217-92369236 | MS.gene68805:intron | 25.0% |
| !! | ATGAGCAAGATTTTATTGAT+CGG | + | chr3.2:92367632-92367651 | MS.gene68805:CDS | 25.0% |
| !! | TAAAGTATTATGAACAGCAA+AGG | - | chr3.2:92369514-92369533 | None:intergenic | 25.0% |
| !! | TTAATCTTTTTATGATTCCC+AGG | + | chr3.2:92369531-92369550 | MS.gene68805:intron | 25.0% |
| !! | TTTGAAATTGATCCAACATT+TGG | + | chr3.2:92369744-92369763 | MS.gene68805:CDS | 25.0% |
| !!! | AATTTTTTTTTCCACAATGG+GGG | + | chr3.2:92369427-92369446 | MS.gene68805:intron | 25.0% |
| !!! | CAATTTTTTTTTCCACAATG+GGG | + | chr3.2:92369426-92369445 | MS.gene68805:intron | 25.0% |
| !!! | CATTTAAGACTTTTTGTTAG+AGG | - | chr3.2:92368950-92368969 | None:intergenic | 25.0% |
| !!! | CTCAATTTTTTTTTCCACAA+TGG | + | chr3.2:92369424-92369443 | MS.gene68805:intron | 25.0% |
| AAGGATATATGTGTACTGTA+CGG | + | chr3.2:92369236-92369255 | MS.gene68805:intron | 30.0% | |
| AGAGATAAAGTTGTTATCCT+AGG | + | chr3.2:92368485-92368504 | MS.gene68805:CDS | 30.0% | |
| AGATTCTTTCCTTCTGAATT+CGG | + | chr3.2:92368287-92368306 | MS.gene68805:CDS | 30.0% | |
| AGCGTATTATATATATGCAG+GGG | + | chr3.2:92368026-92368045 | MS.gene68805:intron | 30.0% | |
| AGGATAACAACTTTATCTCT+TGG | - | chr3.2:92368485-92368504 | None:intergenic | 30.0% | |
| ATAACAACTTTATCTCTTGG+TGG | - | chr3.2:92368482-92368501 | None:intergenic | 30.0% | |
| ATCCATCATCAACAAATTCA+AGG | + | chr3.2:92367760-92367779 | MS.gene68805:CDS | 30.0% | |
| ATTAGGTACTAGGTCTTAAA+TGG | + | chr3.2:92369455-92369474 | MS.gene68805:intron | 30.0% | |
| CAGCGTATTATATATATGCA+GGG | + | chr3.2:92368025-92368044 | MS.gene68805:intron | 30.0% | |
| TACTATATATGCTACCAGAA+AGG | - | chr3.2:92367826-92367845 | None:intergenic | 30.0% | |
| TATATATGTCTACAGAGCAA+TGG | + | chr3.2:92369270-92369289 | MS.gene68805:intron | 30.0% | |
| TCAGCGTATTATATATATGC+AGG | + | chr3.2:92368024-92368043 | MS.gene68805:intron | 30.0% | |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr3.2:92368673-92368692 | None:intergenic | 30.0% |
| ! | CATGTCAAATTTTGTGTATC+AGG | + | chr3.2:92367990-92368009 | MS.gene68805:intron | 30.0% |
| ! | TTTAAGACCTAGTACCTAAT+AGG | - | chr3.2:92369455-92369474 | None:intergenic | 30.0% |
| !! | ATCCTTGAATTTGTTGATGA+TGG | - | chr3.2:92367765-92367784 | None:intergenic | 30.0% |
| !!! | ATCAACAGCTGTTTTTAACA+AGG | + | chr3.2:92368606-92368625 | MS.gene68805:intron | 30.0% |
| AAAAAAGTGATGTGTCAACG+TGG | - | chr3.2:92368875-92368894 | None:intergenic | 35.0% | |
| AAAAAGTGATGTGTCAACGT+GGG | - | chr3.2:92368874-92368893 | None:intergenic | 35.0% | |
| AAAGTTGTTATCCTAGGAGA+TGG | + | chr3.2:92368491-92368510 | MS.gene68805:CDS | 35.0% | |
| AACATTTCCAGCTTCTTTGA+TGG | - | chr3.2:92368158-92368177 | None:intergenic | 35.0% | |
| AATTCGGAAATGATGTGGAT+CGG | + | chr3.2:92368303-92368322 | MS.gene68805:CDS | 35.0% | |
| ACATCATTTCCGAATTCAGA+AGG | - | chr3.2:92368299-92368318 | None:intergenic | 35.0% | |
| ACGTACAACAACAAGATTGA+CGG | - | chr3.2:92367792-92367811 | None:intergenic | 35.0% | |
| ATATGCTACCAGAAAGGAAT+AGG | - | chr3.2:92367820-92367839 | None:intergenic | 35.0% | |
| ATTAAGGAACTCATCTACAG+TGG | - | chr3.2:92369808-92369827 | None:intergenic | 35.0% | |
| ATTCTGTATATTAGACCACC+AGG | + | chr3.2:92368688-92368707 | MS.gene68805:CDS | 35.0% | |
| CAAAGAAGCTGGAAATGTTA+AGG | + | chr3.2:92368159-92368178 | MS.gene68805:CDS | 35.0% | |
| CAATGATCTCGTATCTCTAT+GGG | + | chr3.2:92368726-92368745 | MS.gene68805:CDS | 35.0% | |
| CTCAATTGTGAGGTCTTAAA+CGG | + | chr3.2:92368846-92368865 | MS.gene68805:intron | 35.0% | |
| CTCACTGTGTGTACATAAAA+GGG | + | chr3.2:92369709-92369728 | MS.gene68805:CDS | 35.0% | |
| GACAGCATCATATTTAATGG+AGG | - | chr3.2:92369684-92369703 | None:intergenic | 35.0% | |
| GCGTATTATATATATGCAGG+GGG | + | chr3.2:92368027-92368046 | MS.gene68805:intron | 35.0% | |
| TACGAGATCATTGAAAGACA+AGG | - | chr3.2:92368719-92368738 | None:intergenic | 35.0% | |
| TCAATGATCTCGTATCTCTA+TGG | + | chr3.2:92368725-92368744 | MS.gene68805:CDS | 35.0% | |
| TCAATTGTGAGGTCTTAAAC+GGG | + | chr3.2:92368847-92368866 | MS.gene68805:intron | 35.0% | |
| TCACTGTGTGTACATAAAAG+GGG | + | chr3.2:92369710-92369729 | MS.gene68805:CDS | 35.0% | |
| TGAAAGAATCTATGTTCCAG+AGG | + | chr3.2:92368771-92368790 | MS.gene68805:CDS | 35.0% | |
| TTCTGAATTCGGAAATGATG+TGG | + | chr3.2:92368298-92368317 | MS.gene68805:CDS | 35.0% | |
| TTGCTTGACACATAAGTGTA+CGG | - | chr3.2:92368407-92368426 | None:intergenic | 35.0% | |
| ! | AAGTTTTCTACAATACGGAG+AGG | + | chr3.2:92369185-92369204 | MS.gene68805:intron | 35.0% |
| ! | ACTCAAACTGATCGATTCAT+GGG | + | chr3.2:92367849-92367868 | MS.gene68805:intron | 35.0% |
| ! | AGCAAGATTTTATTGATCGG+TGG | + | chr3.2:92367635-92367654 | MS.gene68805:CDS | 35.0% |
| !! | CAGATTCTGAAGCAAATTCA+AGG | + | chr3.2:92368796-92368815 | MS.gene68805:CDS | 35.0% |
| !! | TGATGATGGATGATTTAGCA+GGG | - | chr3.2:92367751-92367770 | None:intergenic | 35.0% |
| !! | TTGATGATGGATGATTTAGC+AGG | - | chr3.2:92367752-92367771 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTTAACAAGGAAG+AGG | + | chr3.2:92368612-92368631 | MS.gene68805:intron | 35.0% |
| !!! | GTGTCTAGTTTTACACCTTT+GGG | - | chr3.2:92368521-92368540 | None:intergenic | 35.0% |
| !!! | TGTCTAGTTTTACACCTTTG+GGG | - | chr3.2:92368520-92368539 | None:intergenic | 35.0% |
| !!! | TGTGTCTAGTTTTACACCTT+TGG | - | chr3.2:92368522-92368541 | None:intergenic | 35.0% |
| AATGGAGACACTCAATTGTG+AGG | + | chr3.2:92368836-92368855 | MS.gene68805:intron | 40.0% | |
| ACAATTGAGTGTCTCCATTG+TGG | - | chr3.2:92368835-92368854 | None:intergenic | 40.0% | |
| ACAGTGGTGTATTTCACATC+AGG | - | chr3.2:92369792-92369811 | None:intergenic | 40.0% | |
| ATGCCGTTAAAGCCAGAATT+CGG | + | chr3.2:92368357-92368376 | MS.gene68805:CDS | 40.0% | |
| CAAACCACATGTGTTAGACT+CGG | + | chr3.2:92369619-92369638 | MS.gene68805:intron | 40.0% | |
| CATCATATTTAATGGAGGCG+AGG | - | chr3.2:92369679-92369698 | None:intergenic | 40.0% | |
| CGTCAAATCCTATTCCTTTC+TGG | + | chr3.2:92367809-92367828 | MS.gene68805:intron | 40.0% | |
| GCTCACTGTGTGTACATAAA+AGG | + | chr3.2:92369708-92369727 | MS.gene68805:CDS | 40.0% | |
| GTAGCTTCTACTCCAAATGT+TGG | - | chr3.2:92369759-92369778 | None:intergenic | 40.0% | |
| TATATGTGTACTGTACGGAG+AGG | + | chr3.2:92369241-92369260 | MS.gene68805:intron | 40.0% | |
| TCTCTATGGGAGAAGAAGAT+TGG | + | chr3.2:92368739-92368758 | MS.gene68805:CDS | 40.0% | |
| TGAGGGTCTTAAAAGATGCA+AGG | - | chr3.2:92369408-92369427 | None:intergenic | 40.0% | |
| TGATCTTGTCTTGAACACTC+AGG | - | chr3.2:92368129-92368148 | None:intergenic | 40.0% | |
| TGTGGGTCCATTTAAGCATA+AGG | + | chr3.2:92369370-92369389 | MS.gene68805:intron | 40.0% | |
| TTACATCGGAAAGTTCATGG+TGG | + | chr3.2:92367664-92367683 | MS.gene68805:CDS | 40.0% | |
| ! | ATTTTATTGATCGGTGGCAG+CGG | + | chr3.2:92367641-92367660 | MS.gene68805:CDS | 40.0% |
| ! | GACTCAAACTGATCGATTCA+TGG | + | chr3.2:92367848-92367867 | MS.gene68805:intron | 40.0% |
| ! | TTGAAAGACAAGGCATTACC+TGG | - | chr3.2:92368709-92368728 | None:intergenic | 40.0% |
| ! | TTTTGTTAGAGGGTCTCCAT+TGG | - | chr3.2:92368939-92368958 | None:intergenic | 40.0% |
| !! | GTTAGTAAGAGCATCCACAA+TGG | + | chr3.2:92368818-92368837 | MS.gene68805:intron | 40.0% |
| AGCTCCATGCTGTGATAAAG+AGG | - | chr3.2:92368453-92368472 | None:intergenic | 45.0% | |
| ATCTCTGCCATCAAAGAAGC+TGG | + | chr3.2:92368148-92368167 | MS.gene68805:CDS | 45.0% | |
| CATGCTGTGATAAAGAGGGT+AGG | - | chr3.2:92368448-92368467 | None:intergenic | 45.0% | |
| CGGTTACATCGGAAAGTTCA+TGG | + | chr3.2:92367661-92367680 | MS.gene68805:CDS | 45.0% | |
| CTACCCTCTTTATCACAGCA+TGG | + | chr3.2:92368446-92368465 | MS.gene68805:CDS | 45.0% | |
| GATGGATGATTTAGCAGGGT+TGG | - | chr3.2:92367747-92367766 | None:intergenic | 45.0% | |
| GCTCCATGCTGTGATAAAGA+GGG | - | chr3.2:92368452-92368471 | None:intergenic | 45.0% | |
| GGAGTGGTTGAGTACCTATT+AGG | - | chr3.2:92368918-92368937 | None:intergenic | 45.0% | |
| GGTTGGAAAGAGTTGAGTCT+CGG | - | chr3.2:92367730-92367749 | None:intergenic | 45.0% | |
| GTGTCAAGCAACTACTTTGC+TGG | + | chr3.2:92368416-92368435 | MS.gene68805:CDS | 45.0% | |
| TAGGTACTCAACCACTCCAA+TGG | + | chr3.2:92368920-92368939 | MS.gene68805:intron | 45.0% | |
| TCTACAGAGCAATGGTGCAA+CGG | + | chr3.2:92369278-92369297 | MS.gene68805:intron | 45.0% | |
| TGCTTCAGAATCTGTTCCTC+TGG | - | chr3.2:92368790-92368809 | None:intergenic | 45.0% | |
| TGGTACTGTGTTCGATTCCT+GGG | - | chr3.2:92369551-92369570 | None:intergenic | 45.0% | |
| ! | AAAGACAAGGCATTACCTGG+TGG | - | chr3.2:92368706-92368725 | None:intergenic | 45.0% |
| ! | GCAACGGTACAAAAGTGCAA+CGG | + | chr3.2:92369294-92369313 | MS.gene68805:intron | 45.0% |
| ! | GTCACTTAGAGCATCCACAA+TGG | - | chr3.2:92369492-92369511 | None:intergenic | 45.0% |
| ! | TTAGAGCATCCACAATGGTG+AGG | - | chr3.2:92369487-92369506 | None:intergenic | 45.0% |
| !! | TGTATTAAATAAATAATTAT+TGG | - | chr3.2:92368980-92368999 | None:intergenic | 5.0% |
| !!! | AATTTGTAATTTTTAATATT+TGG | - | chr3.2:92369125-92369144 | None:intergenic | 5.0% |
| ACCACATGTGTTAGACTCGG+TGG | + | chr3.2:92369622-92369641 | MS.gene68805:intron | 50.0% | |
| ACCACCGAGTCTAACACATG+TGG | - | chr3.2:92369626-92369645 | None:intergenic | 50.0% | |
| ACGGCATATGCACTCTTTGC+TGG | - | chr3.2:92368344-92368363 | None:intergenic | 50.0% | |
| CCTAATAGGTACCCCCATTG+TGG | - | chr3.2:92369441-92369460 | None:intergenic | 50.0% | |
| CTAGGAGATGGAAACCCCAA+AGG | + | chr3.2:92368503-92368522 | MS.gene68805:CDS | 50.0% | |
| GAGTTGAGTCTCGGATGAGA+AGG | - | chr3.2:92367721-92367740 | None:intergenic | 50.0% | |
| GGATGAGAAGGAAGGTTGGA+TGG | - | chr3.2:92367709-92367728 | None:intergenic | 50.0% | |
| GTGGTACTGTGTTCGATTCC+TGG | - | chr3.2:92369552-92369571 | None:intergenic | 50.0% | |
| TCTCGGATGAGAAGGAAGGT+TGG | - | chr3.2:92367713-92367732 | None:intergenic | 50.0% | |
| TGAGTCTCGGATGAGAAGGA+AGG | - | chr3.2:92367717-92367736 | None:intergenic | 50.0% | |
| TGGTGAAGACCTCACCATTG+TGG | + | chr3.2:92369475-92369494 | MS.gene68805:intron | 50.0% | |
| TTAGAGGGTCTCCATTGGAG+TGG | - | chr3.2:92368934-92368953 | None:intergenic | 50.0% | |
| ! | ACACATGTGGTTTGTGTGCG+TGG | - | chr3.2:92369613-92369632 | None:intergenic | 50.0% |
| ! | ACATGTGGTTTGTGTGCGTG+GGG | - | chr3.2:92369611-92369630 | None:intergenic | 50.0% |
| ! | CACATGTGGTTTGTGTGCGT+GGG | - | chr3.2:92369612-92369631 | None:intergenic | 50.0% |
| !! | CCACAATGGGGGTACCTATT+AGG | + | chr3.2:92369438-92369457 | MS.gene68805:intron | 50.0% |
| !! | CTTTGGGGTTTCCATCTCCT+AGG | - | chr3.2:92368505-92368524 | None:intergenic | 50.0% |
| !! | GCGCCGAATTCTGGCTTTAA+CGG | - | chr3.2:92368363-92368382 | None:intergenic | 50.0% |
| !! | GGGGGTACCTATTAGGTACT+AGG | + | chr3.2:92369445-92369464 | MS.gene68805:intron | 50.0% |
| ATCGGTGGCAGCGGTTACAT+CGG | + | chr3.2:92367650-92367669 | MS.gene68805:CDS | 55.0% | |
| CAGAATTCGGCGCAGCATTG+AGG | + | chr3.2:92368370-92368389 | MS.gene68805:CDS | 55.0% | |
| CTCAATGCTGCGCCGAATTC+TGG | - | chr3.2:92368372-92368391 | None:intergenic | 55.0% | |
| GTGGAAGCTAGCGTCAAAGC+TGG | + | chr3.2:92367683-92367702 | MS.gene68805:CDS | 55.0% | |
| ! | ATGTGGTTTGTGTGCGTGGG+GGG | - | chr3.2:92369609-92369628 | None:intergenic | 55.0% |
| ! | CATGTGGTTTGTGTGCGTGG+GGG | - | chr3.2:92369610-92369629 | None:intergenic | 55.0% |
| !! | GGGGGGTGTTGTAAATCTCG+TGG | - | chr3.2:92369571-92369590 | None:intergenic | 55.0% |
| ! | TGTGGTTTGTGTGCGTGGGG+GGG | - | chr3.2:92369608-92369627 | None:intergenic | 60.0% |
| ! | CGGCGCAGCATTGAGGCAGA+AGG | + | chr3.2:92368377-92368396 | MS.gene68805:CDS | 65.0% |
| ! | GTGGTTTGTGTGCGTGGGGG+GGG | - | chr3.2:92369607-92369626 | None:intergenic | 65.0% |
| ! | TGGTTTGTGTGCGTGGGGGG+GGG | - | chr3.2:92369606-92369625 | None:intergenic | 65.0% |
| GGTTTGTGTGCGTGGGGGGG+GGG | - | chr3.2:92369605-92369624 | None:intergenic | 70.0% | |
| GTTTGTGTGCGTGGGGGGGG+GGG | - | chr3.2:92369604-92369623 | None:intergenic | 70.0% | |
| TTTGTGTGCGTGGGGGGGGG+GGG | - | chr3.2:92369603-92369622 | None:intergenic | 70.0% | |
| TTGTGTGCGTGGGGGGGGGG+GGG | - | chr3.2:92369602-92369621 | None:intergenic | 75.0% | |
| ! | TGTGTGCGTGGGGGGGGGGG+GGG | - | chr3.2:92369601-92369620 | None:intergenic | 80.0% |
| ! | TGCGTGGGGGGGGGGGGGGA+GGG | - | chr3.2:92369597-92369616 | None:intergenic | 85.0% |
| ! | CGTGGGGGGGGGGGGGGAGG+GGG | - | chr3.2:92369595-92369614 | None:intergenic | 90.0% |
| ! | GCGTGGGGGGGGGGGGGGAG+GGG | - | chr3.2:92369596-92369615 | None:intergenic | 90.0% |
| ! | GTGCGTGGGGGGGGGGGGGG+AGG | - | chr3.2:92369598-92369617 | None:intergenic | 90.0% |
| ! | GTGGGGGGGGGGGGGGAGGG+GGG | - | chr3.2:92369594-92369613 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGAGGGG+GGG | - | chr3.2:92369593-92369612 | None:intergenic | 90.0% |
| ! | GGGGGGGGGGAGGGGGGGGG+GGG | - | chr3.2:92369588-92369607 | None:intergenic | 95.0% |
| ! | GGGGGGGGGGGAGGGGGGGG+GGG | - | chr3.2:92369589-92369608 | None:intergenic | 95.0% |
| ! | GGGGGGGGGGGGAGGGGGGG+GGG | - | chr3.2:92369590-92369609 | None:intergenic | 95.0% |
| ! | GGGGGGGGGGGGGAGGGGGG+GGG | - | chr3.2:92369591-92369610 | None:intergenic | 95.0% |
| ! | GGGGGGGGGGGGGGAGGGGG+GGG | - | chr3.2:92369592-92369611 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92367611 | 92369839 | 92367611 | ID=MS.gene68805 |
| chr3.2 | mRNA | 92367611 | 92369839 | 92367611 | ID=MS.gene68805.t1;Parent=MS.gene68805 |
| chr3.2 | exon | 92367611 | 92367805 | 92367611 | ID=MS.gene68805.t1.exon1;Parent=MS.gene68805.t1 |
| chr3.2 | CDS | 92367611 | 92367805 | 92367611 | ID=cds.MS.gene68805.t1;Parent=MS.gene68805.t1 |
| chr3.2 | exon | 92368046 | 92368180 | 92368046 | ID=MS.gene68805.t1.exon2;Parent=MS.gene68805.t1 |
| chr3.2 | CDS | 92368046 | 92368180 | 92368046 | ID=cds.MS.gene68805.t1;Parent=MS.gene68805.t1 |
| chr3.2 | exon | 92368287 | 92368524 | 92368287 | ID=MS.gene68805.t1.exon3;Parent=MS.gene68805.t1 |
| chr3.2 | CDS | 92368287 | 92368524 | 92368287 | ID=cds.MS.gene68805.t1;Parent=MS.gene68805.t1 |
| chr3.2 | exon | 92368614 | 92368817 | 92368614 | ID=MS.gene68805.t1.exon4;Parent=MS.gene68805.t1 |
| chr3.2 | CDS | 92368614 | 92368817 | 92368614 | ID=cds.MS.gene68805.t1;Parent=MS.gene68805.t1 |
| chr3.2 | exon | 92369673 | 92369839 | 92369673 | ID=MS.gene68805.t1.exon5;Parent=MS.gene68805.t1 |
| chr3.2 | CDS | 92369673 | 92369839 | 92369673 | ID=cds.MS.gene68805.t1;Parent=MS.gene68805.t1 |
| Gene Sequence |
| Protein sequence |
