AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68855

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68855.t1 MTR_4g132490 94.190 327 18 1 1 326 1 327 0.0 634
MS.gene68855.t1 MTR_2g029850 39.275 331 192 4 1 326 4 330 1.12e-75 236
MS.gene68855.t1 MTR_2g029820 39.375 320 183 5 13 326 16 330 1.01e-74 234
MS.gene68855.t1 MTR_1g066640 38.206 301 181 4 28 326 26 323 2.10e-73 229
MS.gene68855.t1 MTR_2g029860 39.339 333 185 5 6 326 3 330 1.99e-72 228
MS.gene68855.t1 MTR_2g029830 39.809 314 178 5 19 326 21 329 2.70e-72 228
MS.gene68855.t1 MTR_1g066380 37.542 301 183 4 28 326 26 323 4.38e-72 226
MS.gene68855.t1 MTR_2g029815 38.438 333 190 6 4 326 3 330 5.07e-71 224
MS.gene68855.t1 MTR_2g029750 39.640 333 186 6 4 326 3 330 7.50e-71 224
MS.gene68855.t1 MTR_5g021060 38.689 305 182 3 26 326 27 330 9.54e-71 223
MS.gene68855.t1 MTR_6g043460 40.000 320 174 9 7 322 19 324 4.95e-70 222
MS.gene68855.t1 MTR_6g043280 42.020 307 162 7 24 326 38 332 1.53e-69 220
MS.gene68855.t1 MTR_2g029910 38.438 333 193 6 1 326 5 332 4.47e-69 219
MS.gene68855.t1 MTR_6g043240 40.984 305 166 7 24 326 39 331 6.07e-69 219
MS.gene68855.t1 MTR_1g066710 36.545 301 186 4 28 326 26 323 7.60e-69 218
MS.gene68855.t1 MTR_3g094650 36.333 300 186 2 28 326 27 322 6.09e-68 215
MS.gene68855.t1 MTR_1g066680 38.206 301 180 5 28 326 26 322 6.96e-68 215
MS.gene68855.t1 MTR_2g029740 37.812 320 188 5 13 326 16 330 2.28e-67 215
MS.gene68855.t1 MTR_1g101830 36.585 328 193 8 6 326 3 322 2.53e-67 214
MS.gene68855.t1 MTR_2g029560 37.829 304 183 3 28 326 23 325 2.77e-67 214
MS.gene68855.t1 MTR_5g022870 35.913 323 197 5 7 326 1 316 4.57e-67 213
MS.gene68855.t1 MTR_2g028980 40.717 307 170 8 28 326 28 330 5.51e-67 214
MS.gene68855.t1 MTR_2g084110 37.667 300 180 3 28 326 24 317 7.16e-67 213
MS.gene68855.t1 MTR_4g132110 37.662 308 187 4 21 326 24 328 2.76e-66 211
MS.gene68855.t1 MTR_1g090760 35.241 332 199 7 3 326 7 330 3.18e-66 211
MS.gene68855.t1 MTR_5g014100 37.255 306 184 4 29 326 26 331 4.93e-66 211
MS.gene68855.t1 MTR_4g087965 38.614 303 179 4 28 323 41 343 9.29e-66 211
MS.gene68855.t1 MTR_5g083860 34.853 307 195 2 21 326 23 325 1.26e-65 209
MS.gene68855.t1 MTR_2g029800 35.152 330 203 5 3 326 6 330 1.63e-65 210
MS.gene68855.t1 MTR_4g132110 38.019 313 184 6 21 326 24 333 4.16e-65 209
MS.gene68855.t1 MTR_4g030890 35.354 297 185 3 33 326 104 396 6.49e-65 211
MS.gene68855.t1 MTR_7g086870 39.933 298 171 5 29 326 22 311 6.73e-65 207
MS.gene68855.t1 MTR_8g075100 35.855 304 185 5 26 326 23 319 9.69e-65 207
MS.gene68855.t1 MTR_3g072190 34.906 318 202 2 9 326 6 318 1.46e-64 207
MS.gene68855.t1 MTR_8g076820 36.624 314 192 4 19 326 18 330 1.55e-64 207
MS.gene68855.t1 MTR_2g084080 36.333 300 184 3 28 326 24 317 9.36e-64 204
MS.gene68855.t1 MTR_1g022970 38.782 312 178 6 21 326 43 347 2.45e-63 204
MS.gene68855.t1 MTR_3g466200 34.967 306 193 3 23 326 19 320 2.57e-63 203
MS.gene68855.t1 MTR_2g029730 37.829 304 183 3 28 326 24 326 3.45e-63 204
MS.gene68855.t1 MTR_7g029030 35.220 318 199 4 13 326 6 320 3.79e-63 203
MS.gene68855.t1 MTR_4g031140 34.314 306 194 3 24 326 23 324 4.70e-63 203
MS.gene68855.t1 MTR_2g084000 35.880 301 185 4 28 326 25 319 1.34e-62 201
MS.gene68855.t1 MTR_7g072510 36.164 318 196 3 10 326 1 312 1.38e-62 201
MS.gene68855.t1 MTR_0155s0040 35.093 322 197 6 7 326 4 315 2.92e-62 201
MS.gene68855.t1 MTR_2g084010 35.093 322 195 7 9 326 7 318 3.02e-62 201
MS.gene68855.t1 MTR_0286s0010 35.505 307 193 4 24 326 29 334 3.85e-62 201
MS.gene68855.t1 MTR_6g008075 35.505 307 193 4 24 326 29 334 3.85e-62 201
MS.gene68855.t1 MTR_2g084090 35.000 300 189 3 28 326 24 318 4.89e-62 200
MS.gene68855.t1 MTR_8g062780 36.452 310 191 4 22 326 16 324 5.38e-62 200
MS.gene68855.t1 MTR_1g025980 34.385 317 199 5 10 323 5 315 5.39e-62 200
MS.gene68855.t1 MTR_7g086820 34.194 310 193 6 18 326 13 312 1.67e-61 199
MS.gene68855.t1 MTR_2g084020 35.216 301 187 4 28 326 24 318 2.05e-61 198
MS.gene68855.t1 MTR_3g092990 33.951 324 211 1 6 326 3 326 4.86e-61 198
MS.gene68855.t1 MTR_4g029200 36.120 299 186 2 28 326 45 338 1.93e-60 197
MS.gene68855.t1 MTR_6g027440 34.259 324 201 6 5 326 1 314 2.52e-60 196
MS.gene68855.t1 MTR_4g125940 35.202 321 197 5 13 326 13 329 4.77e-60 195
MS.gene68855.t1 MTR_3g105790 35.030 334 197 7 1 326 1 322 6.84e-60 195
MS.gene68855.t1 MTR_7g026990 33.750 320 203 3 7 326 12 322 8.42e-60 194
MS.gene68855.t1 MTR_1g066380 38.672 256 152 4 73 326 3 255 1.16e-59 192
MS.gene68855.t1 MTR_2g029830 39.768 259 148 4 74 326 5 261 3.03e-59 192
MS.gene68855.t1 MTR_1g077000 37.584 298 177 5 29 326 39 327 3.37e-59 193
MS.gene68855.t1 MTR_3g094670 34.098 305 196 2 23 326 22 322 7.48e-59 192
MS.gene68855.t1 MTR_5g074860 33.939 330 207 5 1 325 1 324 7.87e-59 192
MS.gene68855.t1 MTR_5g074970 34.043 329 204 5 2 326 7 326 1.62e-58 191
MS.gene68855.t1 MTR_1g054205 36.039 308 184 5 28 326 23 326 1.68e-58 191
MS.gene68855.t1 MTR_4g122640 32.938 337 212 4 3 326 1 336 2.64e-58 191
MS.gene68855.t1 MTR_7g072480 34.154 325 204 4 3 326 1 316 4.97e-58 190
MS.gene68855.t1 MTR_5g049280 32.899 307 197 4 28 326 32 337 5.47e-58 190
MS.gene68855.t1 MTR_4g029170 34.333 300 190 4 29 326 27 321 7.30e-58 189
MS.gene68855.t1 MTR_2g099175 34.615 338 202 6 1 326 5 335 9.45e-58 189
MS.gene68855.t1 MTR_5g017850 34.323 303 193 4 28 326 26 326 1.26e-57 189
MS.gene68855.t1 MTR_5g017860 35.314 303 190 4 28 326 26 326 1.61e-57 189
MS.gene68855.t1 MTR_4g114210 36.170 329 191 7 7 326 2 320 1.95e-57 188
MS.gene68855.t1 MTR_1g086320 33.333 327 211 5 7 326 7 333 5.80e-57 187
MS.gene68855.t1 MTR_7g107520 34.347 329 202 8 3 326 1 320 6.47e-57 187
MS.gene68855.t1 MTR_3g094630 33.443 305 198 2 23 326 22 322 1.77e-56 186
MS.gene68855.t1 MTR_7g093370 35.082 305 191 4 28 326 68 371 1.81e-56 187
MS.gene68855.t1 MTR_1g009750 34.426 305 192 4 28 326 26 328 2.22e-56 186
MS.gene68855.t1 MTR_4g046713 33.645 321 201 5 13 326 11 326 3.76e-56 185
MS.gene68855.t1 MTR_4g083710 33.113 302 196 3 28 326 26 324 4.96e-56 185
MS.gene68855.t1 MTR_3g466180 34.579 321 195 4 7 326 17 323 1.02e-55 184
MS.gene68855.t1 MTR_2g008710 35.474 327 195 6 10 326 5 325 1.24e-55 184
MS.gene68855.t1 MTR_4g029190 36.486 296 181 3 33 326 50 340 1.47e-55 184
MS.gene68855.t1 MTR_5g016010 34.768 302 188 6 28 322 26 325 5.40e-55 182
MS.gene68855.t1 MTR_2g437770 35.855 304 181 6 27 326 48 341 6.82e-55 182
MS.gene68855.t1 MTR_2g078610 35.694 353 184 11 14 325 55 405 2.82e-54 182
MS.gene68855.t1 MTR_4g029180 33.333 297 191 4 32 326 30 321 3.31e-54 180
MS.gene68855.t1 MTR_4g127670 35.179 307 185 6 28 326 23 323 1.04e-53 179
MS.gene68855.t1 MTR_2g088770 35.065 308 184 9 28 326 25 325 1.98e-53 178
MS.gene68855.t1 MTR_1g086490 33.234 334 209 6 7 326 7 340 2.67e-53 178
MS.gene68855.t1 MTR_2g040000 35.065 308 187 7 28 326 28 331 3.06e-53 178
MS.gene68855.t1 MTR_2g077990 35.674 356 180 11 14 325 55 405 3.67e-53 180
MS.gene68855.t1 MTR_4g133800 33.223 301 188 5 30 326 42 333 4.71e-53 177
MS.gene68855.t1 MTR_2g067440 34.783 345 184 9 18 325 46 386 2.49e-52 177
MS.gene68855.t1 MTR_1g115900 33.887 301 192 4 28 326 26 321 4.86e-52 174
MS.gene68855.t1 MTR_3g092990 32.407 324 205 2 6 326 3 315 5.57e-52 174
MS.gene68855.t1 MTR_5g033470 34.405 311 197 6 23 326 67 377 1.56e-51 174
MS.gene68855.t1 MTR_4g095450 34.185 313 176 6 28 325 26 323 2.77e-51 172
MS.gene68855.t1 MTR_1g038680 34.983 303 185 6 33 326 33 332 8.82e-51 171
MS.gene68855.t1 MTR_3g072190 35.039 254 160 2 73 326 3 251 9.36e-51 169
MS.gene68855.t1 MTR_4g125940 35.379 277 169 4 57 326 1 274 3.98e-50 168
MS.gene68855.t1 MTR_4g074990 32.817 323 193 5 10 326 1 305 4.77e-50 169
MS.gene68855.t1 MTR_2g078280 35.294 340 177 11 14 312 55 392 2.10e-49 169
MS.gene68855.t1 MTR_4g074995 31.126 302 189 4 28 326 23 308 4.31e-49 166
MS.gene68855.t1 MTR_5g074760 32.566 304 194 6 28 326 24 321 1.11e-48 166
MS.gene68855.t1 MTR_4g074980 35.938 256 149 3 5 258 11 253 3.16e-48 162
MS.gene68855.t1 MTR_5g074740 32.566 304 194 6 28 326 24 321 3.33e-48 164
MS.gene68855.t1 MTR_3g467600 31.661 319 208 5 13 326 11 324 5.28e-48 164
MS.gene68855.t1 MTR_1g009750 32.013 303 185 5 28 326 26 311 1.99e-46 159
MS.gene68855.t1 MTR_5g074710 30.263 304 201 5 28 326 24 321 1.22e-45 158
MS.gene68855.t1 MTR_4g074980 31.193 327 177 5 5 326 11 294 7.15e-45 155
MS.gene68855.t1 MTR_3g105790 35.918 245 145 4 90 326 6 246 3.15e-44 152
MS.gene68855.t1 MTR_2g067450 33.333 309 190 6 26 325 8 309 2.46e-42 149
MS.gene68855.t1 MTR_2g008160 30.990 313 192 7 27 326 22 323 2.33e-40 144
MS.gene68855.t1 MTR_5g074860 29.697 330 182 5 1 325 1 285 3.66e-40 142
MS.gene68855.t1 MTR_2g008730 36.017 236 142 4 98 326 68 301 1.91e-38 138
MS.gene68855.t1 MTR_0147s0010 30.841 321 182 6 29 325 77 381 4.15e-38 139
MS.gene68855.t1 MTR_2g029880 35.602 191 107 4 141 326 9 188 5.19e-32 119
MS.gene68855.t1 MTR_2g008160 35.795 176 109 2 27 202 22 193 2.53e-31 117
MS.gene68855.t1 MTR_2g008160 28.296 311 168 7 27 326 22 288 9.19e-31 117
MS.gene68855.t1 MTR_5g074700 31.111 225 134 6 105 326 8 214 3.81e-29 111
MS.gene68855.t1 MTR_3g072260 41.406 128 75 0 9 136 6 133 1.32e-25 100
MS.gene68855.t1 MTR_3g072210 31.053 190 122 5 140 326 55 238 5.46e-25 101
MS.gene68855.t1 MTR_7g072490 27.642 246 117 3 75 319 2 187 2.04e-19 85.5
MS.gene68855.t1 MTR_5g058120 32.716 162 98 3 162 322 4 155 2.47e-19 86.3
MS.gene68855.t1 MTR_7g086790 40.000 120 68 2 76 195 17 132 6.27e-19 83.6
MS.gene68855.t1 MTR_1g098320 44.872 78 43 0 249 326 47 124 5.08e-16 74.3
MS.gene68855.t1 MTR_6g048160 52.113 71 30 1 68 138 22 88 1.71e-15 71.2
MS.gene68855.t1 MTR_1g089005 29.371 143 88 3 7 144 1 135 2.30e-12 64.3
MS.gene68855.t1 MTR_4g114220 41.489 94 45 2 46 139 20 103 5.47e-12 63.2
MS.gene68855.t1 MTR_4g012865 46.429 56 30 0 29 84 77 132 3.72e-11 60.8
MS.gene68855.t1 MTR_4g031040 27.049 122 74 2 139 260 25 131 8.55e-11 59.7
MS.gene68855.t1 MTR_7g107500 32.653 98 63 2 229 326 3 97 9.29e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68855.t1 AT3G17070 52.649 302 139 2 29 326 38 339 2.35e-109 322
MS.gene68855.t1 AT3G17070 52.344 256 118 2 75 326 21 276 4.19e-87 263
MS.gene68855.t1 AT1G71695 41.042 307 169 7 24 326 41 339 3.97e-73 230
MS.gene68855.t1 AT3G03670 40.000 320 179 5 14 326 8 321 4.54e-73 229
MS.gene68855.t1 AT2G37130 37.987 308 185 5 22 326 23 327 3.71e-72 226
MS.gene68855.t1 AT2G37130 38.591 298 177 5 32 326 2 296 3.83e-71 223
MS.gene68855.t1 AT5G66390 37.725 334 199 5 1 326 1 333 9.02e-71 223
MS.gene68855.t1 AT4G16270 40.256 313 175 6 21 326 41 348 1.72e-69 220
MS.gene68855.t1 AT4G21960 38.333 300 180 4 29 326 31 327 4.42e-69 219
MS.gene68855.t1 AT2G22420 35.312 320 202 3 9 326 3 319 6.13e-69 218
MS.gene68855.t1 AT5G17820 38.095 315 181 4 15 326 10 313 7.57e-69 218
MS.gene68855.t1 AT3G50990 35.821 335 202 5 4 326 8 341 1.32e-68 218
MS.gene68855.t1 AT5G17820 38.095 315 181 4 15 326 63 366 4.34e-68 217
MS.gene68855.t1 AT2G18140 36.170 329 203 4 3 326 9 335 1.23e-67 215
MS.gene68855.t1 AT4G36430 35.738 305 191 3 26 326 27 330 2.60e-66 211
MS.gene68855.t1 AT2G18150 35.922 309 190 5 23 326 31 336 1.70e-64 207
MS.gene68855.t1 AT5G05340 35.333 300 189 2 28 326 29 324 1.86e-64 206
MS.gene68855.t1 AT2G35380 36.765 340 196 6 1 326 1 335 2.82e-64 206
MS.gene68855.t1 AT1G24110 38.033 305 178 5 29 326 22 322 3.34e-64 206
MS.gene68855.t1 AT2G24800 36.721 305 182 4 28 326 30 329 7.80e-64 205
MS.gene68855.t1 AT4G31760 36.184 304 184 3 28 326 28 326 2.87e-63 204
MS.gene68855.t1 AT5G51890 36.420 324 192 6 1 319 1 315 8.37e-63 202
MS.gene68855.t1 AT1G44970 37.748 302 176 5 33 326 49 346 1.73e-62 202
MS.gene68855.t1 AT5G06730 35.691 311 192 4 22 326 26 334 3.41e-62 202
MS.gene68855.t1 AT1G68850 34.421 337 207 7 1 326 2 335 5.23e-62 201
MS.gene68855.t1 AT1G05260 36.503 326 191 8 13 326 4 325 2.03e-61 199
MS.gene68855.t1 AT5G58400 36.213 301 186 3 28 326 29 325 6.34e-60 195
MS.gene68855.t1 AT5G06720 33.841 328 203 5 7 326 12 333 1.18e-59 194
MS.gene68855.t1 AT2G34060 36.066 305 186 7 27 323 40 343 1.44e-59 194
MS.gene68855.t1 AT4G26010 37.000 300 177 6 28 326 21 309 1.83e-59 193
MS.gene68855.t1 AT4G26010 37.000 300 177 6 28 326 49 337 4.20e-59 193
MS.gene68855.t1 AT5G14130 34.824 313 194 4 20 326 22 330 5.59e-59 192
MS.gene68855.t1 AT5G15180 33.939 330 208 5 1 326 6 329 6.32e-59 192
MS.gene68855.t1 AT5G19890 38.154 325 185 8 9 326 12 327 9.96e-59 192
MS.gene68855.t1 AT1G14540 36.093 302 184 6 28 326 20 315 1.14e-58 191
MS.gene68855.t1 AT5G40150 35.430 302 190 3 27 326 30 328 1.19e-58 192
MS.gene68855.t1 AT5G14130 34.824 313 194 4 20 326 63 371 2.03e-58 192
MS.gene68855.t1 AT4G33420 33.962 318 201 4 9 326 17 325 3.43e-58 191
MS.gene68855.t1 AT1G49570 35.333 300 189 2 28 322 47 346 3.73e-58 191
MS.gene68855.t1 AT4G08770 36.156 307 186 5 28 326 23 327 5.15e-58 191
MS.gene68855.t1 AT5G42180 35.312 320 196 7 9 325 5 316 7.08e-58 189
MS.gene68855.t1 AT4G33420 33.962 318 201 4 9 326 64 372 9.92e-58 191
MS.gene68855.t1 AT5G19880 34.639 332 200 6 4 326 6 329 1.14e-57 189
MS.gene68855.t1 AT1G34510 36.667 300 178 6 28 326 21 309 1.94e-57 188
MS.gene68855.t1 AT4G08780 36.482 307 185 5 28 326 23 327 2.03e-57 189
MS.gene68855.t1 AT2G41480 35.802 324 190 7 13 326 13 328 3.25e-57 188
MS.gene68855.t1 AT4G37530 34.615 312 183 8 28 326 26 329 4.18e-57 188
MS.gene68855.t1 AT1G30870 36.275 306 180 6 27 326 49 345 8.00e-57 187
MS.gene68855.t1 AT2G18980 33.882 304 192 4 28 326 24 323 5.06e-56 185
MS.gene68855.t1 AT4G37520 33.441 311 188 7 28 326 26 329 6.07e-56 185
MS.gene68855.t1 AT2G38390 35.275 309 185 6 28 326 30 333 9.96e-56 185
MS.gene68855.t1 AT3G28200 36.482 307 179 7 27 326 19 316 1.33e-55 183
MS.gene68855.t1 AT3G01190 34.768 302 187 5 29 326 26 321 1.41e-55 184
MS.gene68855.t1 AT1G14550 34.884 301 190 4 28 326 25 321 1.49e-55 184
MS.gene68855.t1 AT3G32980 35.048 311 192 5 24 326 26 334 2.04e-55 184
MS.gene68855.t1 AT1G05240 34.000 300 188 4 29 322 26 321 3.09e-55 183
MS.gene68855.t1 AT1G05250 34.000 300 188 4 29 322 26 321 3.09e-55 183
MS.gene68855.t1 AT4G11290 35.714 308 184 8 28 326 24 326 3.65e-55 182
MS.gene68855.t1 AT4G30170 33.882 304 192 5 28 326 26 325 5.81e-55 182
MS.gene68855.t1 AT2G38380 35.505 307 187 5 28 326 30 333 6.06e-55 183
MS.gene68855.t1 AT3G49120 35.179 307 189 5 28 326 31 335 8.14e-55 182
MS.gene68855.t1 AT5G58390 32.188 320 211 3 9 326 1 316 8.56e-54 179
MS.gene68855.t1 AT4G33870 30.548 347 203 4 15 324 54 399 8.74e-54 181
MS.gene68855.t1 AT4G17690 33.115 305 191 3 28 326 25 322 1.43e-53 179
MS.gene68855.t1 AT4G37520 32.797 311 187 8 28 326 26 326 2.17e-53 178
MS.gene68855.t1 AT5G67400 33.119 311 189 6 28 326 26 329 2.90e-53 178
MS.gene68855.t1 AT5G47000 32.635 334 197 6 6 326 12 330 3.04e-53 178
MS.gene68855.t1 AT2G43480 33.226 310 188 6 28 326 34 335 3.22e-53 178
MS.gene68855.t1 AT3G49110 35.505 307 188 5 28 326 32 336 3.68e-53 178
MS.gene68855.t1 AT3G21770 33.887 301 189 7 28 322 28 324 2.35e-52 176
MS.gene68855.t1 AT5G22410 34.650 329 200 9 1 322 1 321 2.70e-52 175
MS.gene68855.t1 AT5G24070 33.548 310 187 6 28 326 34 335 1.51e-51 174
MS.gene68855.t1 AT5G64120 33.779 299 184 5 33 326 39 328 1.72e-50 171
MS.gene68855.t1 AT3G49960 31.629 313 191 7 28 326 26 329 4.56e-50 169
MS.gene68855.t1 AT2G39040 34.202 307 193 6 28 326 45 350 1.20e-49 169
MS.gene68855.t1 AT4G25980 32.588 313 198 6 22 326 19 326 1.81e-48 165
MS.gene68855.t1 AT4G37530 35.472 265 150 8 28 279 26 282 2.52e-48 164
MS.gene68855.t1 AT5G39580 32.308 325 211 5 5 326 1 319 4.23e-46 159
MS.gene68855.t1 AT1G77100 30.938 320 207 7 13 326 8 319 1.45e-44 155
MS.gene68855.t1 AT5G64100 33.232 328 200 8 7 326 15 331 1.81e-42 150
MS.gene68855.t1 AT5G64110 33.555 301 185 6 33 326 38 330 2.76e-42 149
MS.gene68855.t1 AT2G35380 35.833 240 136 5 100 326 13 247 5.32e-42 146
MS.gene68855.t1 AT4G25980 38.286 175 104 2 22 196 64 234 2.14e-35 130
MS.gene68855.t1 AT2G24800 38.922 167 98 1 28 194 30 192 1.34e-34 127
MS.gene68855.t1 AT5G39580 33.476 233 142 4 13 245 9 228 1.03e-32 121
MS.gene68855.t1 AT3G42570 51.402 107 51 1 89 194 41 147 6.93e-28 106
MS.gene68855.t1 AT4G32320 28.195 266 127 9 61 314 115 328 9.76e-18 82.8
MS.gene68855.t1 AT3G09640 27.526 287 150 12 30 306 5 243 1.66e-17 81.3
MS.gene68855.t1 AT3G09640 27.526 287 150 12 30 306 5 243 1.66e-17 81.3

Find 0 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTGTCAAATATTGTT+GGG - 32681:11171-11190 None:intergenic 20.0%
!! ATAAAATGTCAAATGCTATT+AGG - 32681:10882-10901 None:intergenic 20.0%
!! ATGAGTTCAACTATAATTTA+TGG - 32681:10613-10632 None:intergenic 20.0%
!! TAATGATTGTCAAATATTGT+TGG - 32681:11172-11191 None:intergenic 20.0%
!! TTAGACAAATATTACAATGT+AGG + 32681:10146-10165 MS.gene68855:intron 20.0%
!!! TTATCCATTTTCAAATCTAA+AGG + 32681:10541-10560 MS.gene68855:CDS 20.0%
! AAACTTTGCAATCAGAAATA+GGG + 32681:10306-10325 MS.gene68855:CDS 25.0%
! ATGATTGTCAAATATTGTTG+GGG - 32681:11170-11189 None:intergenic 25.0%
! CATTCCTTTAGATTTGAAAA+TGG - 32681:10548-10567 None:intergenic 25.0%
! TATTACAGAGACATTATGAT+GGG + 32681:11190-11209 MS.gene68855:CDS 25.0%
! TTATTACAGAGACATTATGA+TGG + 32681:11189-11208 MS.gene68855:CDS 25.0%
! TTGATATGCATTACCTAAAA+TGG - 32681:10590-10609 None:intergenic 25.0%
! TTGTATAATCAACAGATAAG+AGG + 32681:11049-11068 MS.gene68855:CDS 25.0%
!!! CTGTTACTATTAATTTTGAC+AGG + 32681:10980-10999 MS.gene68855:intron 25.0%
AATGTTCTCACAAATATGCA+AGG + 32681:11346-11365 MS.gene68855:CDS 30.0%
ACAAATGTTAGGTTTGTCAT+AGG - 32681:11133-11152 None:intergenic 30.0%
ACCCATAATTCTTGGTAAAA+AGG - 32681:10704-10723 None:intergenic 30.0%
ATAATTCTTGGTAAAAAGGG+AGG - 32681:10700-10719 None:intergenic 30.0%
ATATTAGAAGAAGAATGTCC+AGG + 32681:10352-10371 MS.gene68855:CDS 30.0%
CAAAAACCATTGCTTATCTT+AGG - 32681:10958-10977 None:intergenic 30.0%
CCCATAATTCTTGGTAAAAA+GGG - 32681:10703-10722 None:intergenic 30.0%
CTAATCCATAATCCATTTCA+GGG + 32681:10803-10822 MS.gene68855:intron 30.0%
CTATAGTAATTACCTGAACT+TGG - 32681:10087-10106 None:intergenic 30.0%
GAAACTTTGCAATCAGAAAT+AGG + 32681:10305-10324 MS.gene68855:CDS 30.0%
GTTGAATTAATTTCCATGCA+GGG + 32681:10217-10236 MS.gene68855:intron 30.0%
TCAACAAAACAAACAAAGTG+AGG - 32681:10202-10221 None:intergenic 30.0%
TCTAATCCATAATCCATTTC+AGG + 32681:10802-10821 MS.gene68855:intron 30.0%
TGTAGTAGTTGTAAGAAAGT+TGG - 32681:9955-9974 None:intergenic 30.0%
TGTTGAATTAATTTCCATGC+AGG + 32681:10216-10235 MS.gene68855:intron 30.0%
TTGTCATAGGAATAACAGTT+GGG - 32681:11120-11139 None:intergenic 30.0%
TTGTTACCTAAGATAAGCAA+TGG + 32681:10949-10968 MS.gene68855:intron 30.0%
TTTGTCATAGGAATAACAGT+TGG - 32681:11121-11140 None:intergenic 30.0%
! CAAATATCTGCTCTTTTTGT+TGG + 32681:10742-10761 MS.gene68855:intron 30.0%
! CCCTTTTTACCAAGAATTAT+GGG + 32681:10700-10719 MS.gene68855:intron 30.0%
! CCTTTTACACCAAATGAAAA+TGG - 32681:9929-9948 None:intergenic 30.0%
! TCCCTTTTTACCAAGAATTA+TGG + 32681:10699-10718 MS.gene68855:intron 30.0%
!! AAGAACTTCTAGTTCTAAAG+AGG + 32681:10474-10493 MS.gene68855:CDS 30.0%
!!! CCATTTTCATTTGGTGTAAA+AGG + 32681:9926-9945 MS.gene68855:CDS 30.0%
!!! GGTGTTTTTTATGTCGTTTA+AGG + 32681:10167-10186 MS.gene68855:intron 30.0%
!!! TATCATTGTTTTAGCTGCTA+AGG + 32681:10393-10412 MS.gene68855:CDS 30.0%
AAGAGGAGACAATATGGATT+TGG + 32681:11066-11085 MS.gene68855:CDS 35.0%
AATTCGTCAACTGTTACTGT+CGG - 32681:10520-10539 None:intergenic 35.0%
ACAGATAAGAGGAGACAATA+TGG + 32681:11060-11079 MS.gene68855:CDS 35.0%
AGAGGAGACAATATGGATTT+GGG + 32681:11067-11086 MS.gene68855:CDS 35.0%
ATAGTTGAACTCATTTCGTC+AGG + 32681:10619-10638 MS.gene68855:intron 35.0%
ATTGTTGGGGTAATGTCATT+AGG - 32681:11157-11176 None:intergenic 35.0%
CTTAACAAATGCAGATGAGA+AGG - 32681:11314-11333 None:intergenic 35.0%
GTGTCCAAACTTAGAAAGTT+TGG + 32681:9982-10001 MS.gene68855:CDS 35.0%
GTGTTCATGAGTTGTATATC+TGG - 32681:10845-10864 None:intergenic 35.0%
TAGTTGAACTCATTTCGTCA+GGG + 32681:10620-10639 MS.gene68855:intron 35.0%
TCGACCAAACTTTCTAAGTT+TGG - 32681:9989-10008 None:intergenic 35.0%
TCTTGCAACTGTGGTTATTA+TGG + 32681:9898-9917 MS.gene68855:CDS 35.0%
TGTCATTAGGCACAAATGTT+AGG - 32681:11144-11163 None:intergenic 35.0%
! AAAAAGGGAGGAAAAAGTGT+TGG - 32681:10688-10707 None:intergenic 35.0%
! ATATCTGCTCTTTTTGTTGG+TGG + 32681:10745-10764 MS.gene68855:intron 35.0%
! CTTGAATCTTTTCTTCCAAG+TGG - 32681:10457-10476 None:intergenic 35.0%
! TTATGTCGTTTAAGGTTGCT+TGG + 32681:10175-10194 MS.gene68855:intron 35.0%
!!! ATGGCTATGCCATTTTCATT+TGG + 32681:9917-9936 MS.gene68855:CDS 35.0%
!!! CAAGAATCTGTTGCCATTTT+AGG + 32681:10574-10593 MS.gene68855:CDS 35.0%
ACAGTTGCAAGAAGAATCAG+AGG - 32681:9890-9909 None:intergenic 40.0%
ATAGCAAACCTCATGGCAAT+GGG - 32681:11268-11287 None:intergenic 40.0%
ATATGCAAGGTGAAGTCAGA+AGG + 32681:11359-11378 MS.gene68855:CDS 40.0%
ATGAGCCTTAGAAATGCTGA+TGG - 32681:10052-10071 None:intergenic 40.0%
CAAGTCACACCCATAATTCT+TGG - 32681:10712-10731 None:intergenic 40.0%
GATTGTGTCCAACAAAATCG+AGG - 32681:10251-10270 None:intergenic 40.0%
GTTTCATGATTGCCAAGTTC+AGG + 32681:10072-10091 MS.gene68855:CDS 40.0%
TCTGATTCTTCTTGCAACTG+TGG + 32681:9889-9908 MS.gene68855:CDS 40.0%
TTGACAGGTGCACATACATT+AGG + 32681:10995-11014 MS.gene68855:intron 40.0%
TTGGTCGAGAGAGAATTGAT+GGG + 32681:10001-10020 MS.gene68855:CDS 40.0%
TTTGGTCGAGAGAGAATTGA+TGG + 32681:10000-10019 MS.gene68855:CDS 40.0%
! AGAGACATTATGATGGGAAG+AGG + 32681:11196-11215 MS.gene68855:CDS 40.0%
! ATGTGATGCCTCGATTTTGT+TGG + 32681:10240-10259 MS.gene68855:CDS 40.0%
!! AAAAAGTGTTGGTTGCACGT+GGG - 32681:10677-10696 None:intergenic 40.0%
!! AGCTCTGAAATAGCTTCTTC+AGG + 32681:10283-10302 MS.gene68855:CDS 40.0%
!! TCTAGCCCTGAAATGGATTA+TGG - 32681:10811-10830 None:intergenic 40.0%
CATAGCAAACCTCATGGCAA+TGG - 32681:11269-11288 None:intergenic 45.0%
CATGATGTCTAGCCCTGAAA+TGG - 32681:10818-10837 None:intergenic 45.0%
CCAAGTGGAACCTGAATACT+TGG - 32681:10442-10461 None:intergenic 45.0%
CTGATCCATAGCAAACCTCA+TGG - 32681:11275-11294 None:intergenic 45.0%
GTGCACCATCAGCATTTCTA+AGG + 32681:10044-10063 MS.gene68855:CDS 45.0%
TCAACTGTTACTGTCGGTGA+AGG - 32681:10514-10533 None:intergenic 45.0%
TCTGCACAAGATACTTGTCC+TGG - 32681:10373-10392 None:intergenic 45.0%
TGGTGGTTGAGATCACTAAC+TGG + 32681:10762-10781 MS.gene68855:intron 45.0%
! AAGGTATCAGTGTCACTCTC+TGG + 32681:10412-10431 MS.gene68855:CDS 45.0%
! ATGATGGGAAGAGGTCTGTT+TGG + 32681:11205-11224 MS.gene68855:CDS 45.0%
! CCAAGTATTCAGGTTCCACT+TGG + 32681:10439-10458 MS.gene68855:CDS 45.0%
! GGACACTGCATAAGCATTGT+TGG + 32681:11022-11041 MS.gene68855:CDS 45.0%
!! CATTGCCATGAGGTTTGCTA+TGG + 32681:11267-11286 MS.gene68855:CDS 45.0%
!! GAAAAAGTGTTGGTTGCACG+TGG - 32681:10678-10697 None:intergenic 45.0%
GGTGCACATACATTAGGCGT+TGG + 32681:11001-11020 MS.gene68855:intron 50.0%
! CTCTGGAGGACCAAGTATTC+AGG + 32681:10429-10448 MS.gene68855:CDS 50.0%
! GTATCAGTGTCACTCTCTGG+AGG + 32681:10415-10434 MS.gene68855:CDS 50.0%
!! TGGGCATGCTAGTCTTAGTG+AGG - 32681:11101-11120 None:intergenic 50.0%
ATGGCAATGGGTGCAGTTCG+TGG - 32681:11256-11275 None:intergenic 55.0%
GAACTGCACCCATTGCCATG+AGG + 32681:11257-11276 MS.gene68855:CDS 55.0%
! CGAGGCATCACATCCCTGCA+TGG - 32681:10233-10252 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
32681 gene 9872 11402 9872 ID=MS.gene68855
32681 mRNA 9872 11402 9872 ID=MS.gene68855.t1;Parent=MS.gene68855
32681 exon 9872 10093 9872 ID=MS.gene68855.t1.exon1;Parent=MS.gene68855.t1
32681 CDS 9872 10093 9872 ID=cds.MS.gene68855.t1;Parent=MS.gene68855.t1
32681 exon 10238 10595 10238 ID=MS.gene68855.t1.exon2;Parent=MS.gene68855.t1
32681 CDS 10238 10595 10238 ID=cds.MS.gene68855.t1;Parent=MS.gene68855.t1
32681 exon 11002 11402 11002 ID=MS.gene68855.t1.exon3;Parent=MS.gene68855.t1
32681 CDS 11002 11402 11002 ID=cds.MS.gene68855.t1;Parent=MS.gene68855.t1
Gene Sequence

>MS.gene68855

ATGGAAATATCTCTTCCTCTGATTCTTCTTGCAACTGTGGTTATTATGGCTATGCCATTTTCATTTGGTGTAAAAGGAAACCAACTTTCTTACAACTACTACAAGAATTCGTGTCCAAACTTAGAAAGTTTGGTCGAGAGAGAATTGATGGGCGTATTCTTGAGAGATATTCGTGCACCATCAGCATTTCTAAGGCTCATGTTTCATGATTGCCAAGTTCAGGTAATTACTATAGCTAGTAGCACTGATTGCTTGACTCACAAACTTAACAATTTTAGACAAATATTACAATGTAGGTGTTTTTTATGTCGTTTAAGGTTGCTTGGACCTCACTTTGTTTGTTTTGTTGAATTAATTTCCATGCAGGGATGTGATGCCTCGATTTTGTTGGACACAATCTACGCTACTCAAAGCTCTGAAATAGCTTCTTCAGGAAACTTTGCAATCAGAAATAGGGAAACAATCAACGACATAAAATCGATATTAGAAGAAGAATGTCCAGGACAAGTATCTTGTGCAGATATCATTGTTTTAGCTGCTAAGGTATCAGTGTCACTCTCTGGAGGACCAAGTATTCAGGTTCCACTTGGAAGAAAAGATTCAAGAACTTCTAGTTCTAAAGAGGCTGATGCTAAGCTTCCTTCACCGACAGTAACAGTTGACGAATTTTTATCCATTTTCAAATCTAAAGGAATGAACATTCAAGAATCTGTTGCCATTTTAGGTAATGCATATCAACCATAAATTATAGTTGAACTCATTTCGTCAGGGAAAGTCTCAAAAGTATAAGTTTTACACAATTCCCACGTGCAACCAACACTTTTTCCTCCCTTTTTACCAAGAATTATGGGTGTGACTTGTGAGAAATCTCAAATATCTGCTCTTTTTGTTGGTGGTTGAGATCACTAACTGGAGTAACTATTAGCTTCATCTAATCCATAATCCATTTCAGGGCTAGACATCATGATATCCAGATATACAACTCATGAACACTTATTCTTTAAATTCCTAATAGCATTTGACATTTTATTTTATTTTTTATTGTCATTTAAAGTGTTATACTAATACAGATAAAAATTGTTACCTAAGATAAGCAATGGTTTTTGATCTGTTACTATTAATTTTGACAGGTGCACATACATTAGGCGTTGGACACTGCATAAGCATTGTTGGCAGATTGTATAATCAACAGATAAGAGGAGACAATATGGATTTGGGTTATGAAACCTCACTAAGACTAGCATGCCCAACTGTTATTCCTATGACAAACCTAACATTTGTGCCTAATGACATTACCCCAACAATATTTGACAATCATTATTACAGAGACATTATGATGGGAAGAGGTCTGTTTGGTATTGACTCGAGCATTTCTAGAGATCCACGAACTGCACCCATTGCCATGAGGTTTGCTATGGATCAGAGCTACTTCTTTGAGACCTTCTCATCTGCATTTGTTAAGCTTTCTGCTAGCAATGTTCTCACAAATATGCAAGGTGAAGTCAGAAGGAAATGCAACCAGCTGAACTAG
Protein sequence

>MS.gene68855.t1

MEISLPLILLATVVIMAMPFSFGVKGNQLSYNYYKNSCPNLESLVERELMGVFLRDIRAPSAFLRLMFHDCQVQGCDASILLDTIYATQSSEIASSGNFAIRNRETINDIKSILEEECPGQVSCADIIVLAAKVSVSLSGGPSIQVPLGRKDSRTSSSKEADAKLPSPTVTVDEFLSIFKSKGMNIQESVAILGAHTLGVGHCISIVGRLYNQQIRGDNMDLGYETSLRLACPTVIPMTNLTFVPNDITPTIFDNHYYRDIMMGRGLFGIDSSISRDPRTAPIAMRFAMDQSYFFETFSSAFVKLSASNVLTNMQGEVRRKCNQLN