Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68934.t1 | XP_004487714.1 | 59.5 | 620 | 138 | 9 | 1 | 512 | 1 | 615 | 2.10E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68934.t1 | O23144 | 38.6 | 606 | 238 | 14 | 1 | 489 | 1 | 589 | 6.2e-43 | 176.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68934.t1 | A0A1S2XDM5 | 59.5 | 620 | 138 | 9 | 1 | 512 | 1 | 615 | 1.5e-135 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene68934 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene68934 | 0.812258 | 4.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68934.t1 | MTR_4g132200 | 82.112 | 464 | 47 | 3 | 84 | 512 | 144 | 606 | 0.0 | 681 |
| MS.gene68934.t1 | MTR_2g085330 | 71.767 | 464 | 86 | 4 | 84 | 512 | 156 | 609 | 1.30e-177 | 513 |
| MS.gene68934.t1 | MTR_2g085330 | 68.182 | 88 | 24 | 2 | 1 | 85 | 1 | 87 | 7.85e-28 | 117 |
| MS.gene68934.t1 | MTR_2g085330 | 71.767 | 464 | 86 | 4 | 84 | 512 | 221 | 674 | 2.01e-176 | 512 |
| MS.gene68934.t1 | MTR_2g085330 | 68.182 | 88 | 24 | 2 | 1 | 85 | 66 | 152 | 1.91e-27 | 117 |
| MS.gene68934.t1 | MTR_2g090520 | 29.444 | 180 | 90 | 5 | 136 | 279 | 53 | 231 | 2.28e-11 | 64.7 |
| MS.gene68934.t1 | MTR_2g090520 | 29.444 | 180 | 90 | 5 | 136 | 279 | 196 | 374 | 3.84e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68934.t1 | AT4G27500 | 41.685 | 463 | 204 | 13 | 84 | 497 | 152 | 597 | 4.51e-79 | 259 |
| MS.gene68934.t1 | AT4G27500 | 44.253 | 348 | 139 | 11 | 84 | 386 | 152 | 489 | 3.97e-71 | 236 |
| MS.gene68934.t1 | AT3G15340 | 30.290 | 449 | 236 | 12 | 94 | 492 | 29 | 450 | 2.32e-26 | 112 |
| MS.gene68934.t1 | AT3G15340 | 30.290 | 449 | 236 | 12 | 94 | 492 | 149 | 570 | 2.74e-26 | 113 |
| MS.gene68934.t1 | AT3G15340 | 30.290 | 449 | 236 | 12 | 94 | 492 | 149 | 570 | 2.74e-26 | 113 |
| MS.gene68934.t1 | AT5G36780 | 29.847 | 459 | 218 | 13 | 91 | 492 | 146 | 557 | 4.17e-26 | 112 |
| MS.gene68934.t1 | AT5G36690 | 29.847 | 459 | 218 | 13 | 91 | 492 | 146 | 557 | 4.17e-26 | 112 |
| MS.gene68934.t1 | AT1G53110 | 30.579 | 363 | 163 | 10 | 177 | 497 | 107 | 422 | 1.75e-25 | 109 |
| MS.gene68934.t1 | AT1G20970 | 25.750 | 400 | 197 | 10 | 84 | 403 | 858 | 1237 | 5.69e-12 | 69.3 |
Find 132 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAATTTGCTTGATTT+TGG | 0.110969 | 8.2:+1842636 | None:intergenic |
| CAAATCTTTACCTTTGGTTT+TGG | 0.212062 | 8.2:+1842144 | None:intergenic |
| CCTCAAGCTGTTTGATTTCT+CGG | 0.239375 | 8.2:+1842803 | None:intergenic |
| GAAAACTAAATCGGATAATA+AGG | 0.242155 | 8.2:-1842122 | MS.gene68934:CDS |
| ACCATCATATTTGGCTCATT+TGG | 0.245256 | 8.2:-1843303 | MS.gene68934:CDS |
| TAAGCTTATAGGTGGGGATT+TGG | 0.260982 | 8.2:-1842692 | MS.gene68934:CDS |
| CTTGGTCTTCATTGCAGAAT+TGG | 0.272906 | 8.2:+1842759 | None:intergenic |
| GGCAGTTTCGTGACGACTTT+TGG | 0.277159 | 8.2:+1842220 | None:intergenic |
| CAAGATCAGGTTAAGCTTAT+AGG | 0.278114 | 8.2:-1842703 | MS.gene68934:CDS |
| AATTTCGCTGGATCGATTTC+AGG | 0.284130 | 8.2:+1842031 | None:intergenic |
| TGGTCAGAAGCGTACGATTT+TGG | 0.308746 | 8.2:+1842480 | None:intergenic |
| GCTGGTGAGACCATCATATT+TGG | 0.325587 | 8.2:-1843312 | MS.gene68934:CDS |
| CCTCCTCGGACGAGCATATA+CGG | 0.348675 | 8.2:+1842908 | None:intergenic |
| ACTATTTCTTTAGAGAAGAT+AGG | 0.363621 | 8.2:+1841586 | None:intergenic |
| TGATCTTGGATGGCATCTTT+CGG | 0.381438 | 8.2:+1842718 | None:intergenic |
| AAGAAAGCAAAGAAGAAATC+TGG | 0.382365 | 8.2:-1841869 | MS.gene68934:CDS |
| TCAGCCTCTGCAGCAGGCAC+TGG | 0.388944 | 8.2:-1842965 | MS.gene68934:CDS |
| GAAGGCTTAGGCTCCTCCTT+TGG | 0.390155 | 8.2:+1842199 | None:intergenic |
| CTGCAGCTTCCAGTTCCTCC+GGG | 0.393468 | 8.2:+1841831 | None:intergenic |
| ACCAAGTTAGAGGATACTAT+TGG | 0.393544 | 8.2:-1842742 | MS.gene68934:CDS |
| ATCATTCACCATTTCCTGTT+CGG | 0.398205 | 8.2:+1841796 | None:intergenic |
| TTTGCCTTTCCCTCGTTCAA+TGG | 0.401357 | 8.2:+1842831 | None:intergenic |
| CTATAAGCTTAACCTGATCT+TGG | 0.408274 | 8.2:+1842704 | None:intergenic |
| TGCAATGAAGACCAAGTTAG+AGG | 0.410980 | 8.2:-1842752 | MS.gene68934:CDS |
| ACAGCAGAGGTCTCCTTATG+AGG | 0.417272 | 8.2:+1842061 | None:intergenic |
| TAAAGATTTGAAAACTAAAT+CGG | 0.422466 | 8.2:-1842131 | MS.gene68934:CDS |
| TTTCCCAGTGCCTGCTGCAG+AGG | 0.426953 | 8.2:+1842961 | None:intergenic |
| TGAGGCAACCGAACAGGAAA+TGG | 0.429587 | 8.2:-1841804 | MS.gene68934:CDS |
| TGAGCTGGCAAAGTTTCAAC+TGG | 0.434525 | 8.2:+1842175 | None:intergenic |
| TTGCCTCCATTGTCCACCAT+TGG | 0.434803 | 8.2:+1843384 | None:intergenic |
| TCTGCAGCTTCCAGTTCCTC+CGG | 0.437878 | 8.2:+1841830 | None:intergenic |
| GGAAGCTGAGAAGAAACTTA+AGG | 0.442741 | 8.2:-1841900 | MS.gene68934:CDS |
| TAACTCGAATAATGCGGGTC+GGG | 0.442992 | 8.2:-1842932 | MS.gene68934:CDS |
| GTGCTGCTGCCGTTGGTGCT+TGG | 0.451571 | 8.2:-1841614 | MS.gene68934:CDS |
| GAAAAGAATTATTTCATCGT+TGG | 0.452131 | 8.2:-1842338 | MS.gene68934:CDS |
| TTATTTCATCGTTGGATATG+AGG | 0.456959 | 8.2:-1842330 | MS.gene68934:CDS |
| TGAGATTGTGGGATTCGAAA+TGG | 0.460729 | 8.2:-1843415 | MS.gene68934:CDS |
| ATCGTTGGATATGAGGAAGC+TGG | 0.463294 | 8.2:-1842323 | MS.gene68934:CDS |
| GTGAGAAATTCATGTCGCTT+TGG | 0.463788 | 8.2:-1842393 | MS.gene68934:CDS |
| TGAATTTGAAAATCCTCATA+AGG | 0.468963 | 8.2:-1842074 | MS.gene68934:CDS |
| CCCAATAGTATCCTCTAACT+TGG | 0.469143 | 8.2:+1842741 | None:intergenic |
| AGAAGTTGAGGCAACCGAAC+AGG | 0.472230 | 8.2:-1841810 | MS.gene68934:CDS |
| GGATTTGGATGGTTTGAAGA+AGG | 0.478914 | 8.2:-1842677 | MS.gene68934:CDS |
| GAATGAATCCGCGTAGGTGC+AGG | 0.480222 | 8.2:+1843207 | None:intergenic |
| ACTGCACTTGGAAAGGAGAA+TGG | 0.480227 | 8.2:-1843357 | MS.gene68934:CDS |
| TGAGGAAGCTGGGTAGGGAC+GGG | 0.480322 | 8.2:-1842312 | MS.gene68934:CDS |
| CAGCCTCTGCAGCAGGCACT+GGG | 0.483158 | 8.2:-1842964 | MS.gene68934:CDS |
| TTTATTAGTGCTGCTGCCGT+TGG | 0.483280 | 8.2:-1841621 | MS.gene68934:CDS |
| GTGGGATTCGAAATGGTTCA+AGG | 0.484114 | 8.2:-1843408 | MS.gene68934:CDS |
| ATGAGGAAGCTGGGTAGGGA+CGG | 0.493980 | 8.2:-1842313 | MS.gene68934:CDS |
| CACCGATATCCAGTCTCTAC+AGG | 0.494786 | 8.2:-1842597 | MS.gene68934:intron |
| TGGATATGAGGAAGCTGGGT+AGG | 0.496016 | 8.2:-1842318 | MS.gene68934:CDS |
| TTCATGTCGCTTTGGAAAGG+TGG | 0.496967 | 8.2:-1842385 | MS.gene68934:CDS |
| CCCGGCTCCAATGAAGGAAA+AGG | 0.498151 | 8.2:-1841762 | MS.gene68934:CDS |
| AGGTTCCGAAGCCGAGCAAA+AGG | 0.498654 | 8.2:-1841719 | MS.gene68934:CDS |
| AATGCCACAGGTTCAGCAGC+AGG | 0.498655 | 8.2:+1842244 | None:intergenic |
| AATCCATGTCAAGTAATTGT+TGG | 0.499156 | 8.2:+1841655 | None:intergenic |
| CCAAGTTAGAGGATACTATT+GGG | 0.501016 | 8.2:-1842741 | MS.gene68934:CDS |
| GGCAAAGTTTCAACTGGAGA+AGG | 0.502305 | 8.2:+1842181 | None:intergenic |
| ATGATGGTCTCACCAGCTCC+CGG | 0.504654 | 8.2:+1843318 | None:intergenic |
| GCCATGACGGTTGAGATTGT+GGG | 0.509450 | 8.2:-1843426 | MS.gene68934:CDS |
| TTCAGGCTCTTTCACAGCAG+AGG | 0.510649 | 8.2:+1842048 | None:intergenic |
| CGAGGCCCCGGCTCCAATGA+AGG | 0.510921 | 8.2:-1841768 | MS.gene68934:CDS |
| GAAAGATGCCATCCAAGATC+AGG | 0.514685 | 8.2:-1842716 | MS.gene68934:CDS |
| TCGCAAAGGAGAGTGGTGTC+AGG | 0.516952 | 8.2:-1841739 | MS.gene68934:CDS |
| GAATGATGTTGTCGAGGCCC+CGG | 0.518473 | 8.2:-1841780 | MS.gene68934:CDS |
| AGAGATTCAGCCTCTGCAGC+AGG | 0.518632 | 8.2:-1842971 | MS.gene68934:intron |
| CTTATAGGTGGGGATTTGGA+TGG | 0.519411 | 8.2:-1842688 | MS.gene68934:CDS |
| AACTCGAATAATGCGGGTCG+GGG | 0.520281 | 8.2:-1842931 | MS.gene68934:CDS |
| TCCAAATGAGCCAAATATGA+TGG | 0.524003 | 8.2:+1843302 | None:intergenic |
| ATATTTGGCTCATTTGGAGA+TGG | 0.525241 | 8.2:-1843297 | MS.gene68934:CDS |
| TCAAACAGCTTGAGGATACA+AGG | 0.525730 | 8.2:-1842795 | MS.gene68934:CDS |
| TGGAAAGGAGAATGGAAAGC+TGG | 0.530579 | 8.2:-1843349 | MS.gene68934:CDS |
| AGCAGCTCTCAAAGCACAGA+AGG | 0.531913 | 8.2:-1841921 | MS.gene68934:CDS |
| CAAATCTACTGCACTTGGAA+AGG | 0.532382 | 8.2:-1843364 | MS.gene68934:CDS |
| AGAAGGAGAGACAAGCGATT+CGG | 0.532638 | 8.2:-1842660 | MS.gene68934:CDS |
| TTTGGAGATGGATTTGCTGA+AGG | 0.539190 | 8.2:-1843285 | MS.gene68934:CDS |
| AGTCCAACAATTACTTGACA+TGG | 0.541755 | 8.2:-1841658 | MS.gene68934:CDS |
| TTGGAGATGGATTTGCTGAA+GGG | 0.543247 | 8.2:-1843284 | MS.gene68934:CDS |
| CCGAGAAATCAAACAGCTTG+AGG | 0.543833 | 8.2:-1842803 | MS.gene68934:CDS |
| TGGGTAGGGACGGGCGCGTG+AGG | 0.544751 | 8.2:-1842303 | MS.gene68934:CDS |
| CATTCCATTGAACGAGGGAA+AGG | 0.545149 | 8.2:-1842835 | MS.gene68934:CDS |
| GGACGGGCGCGTGAGGAACC+CGG | 0.546545 | 8.2:-1842296 | MS.gene68934:CDS |
| GGAGGCAAATCTACTGCACT+TGG | 0.546764 | 8.2:-1843369 | MS.gene68934:CDS |
| AGCCATGACGGTTGAGATTG+TGG | 0.547301 | 8.2:-1843427 | None:intergenic |
| AAGCAAAGCTTGCTGCGGAA+AGG | 0.551331 | 8.2:-1841976 | MS.gene68934:CDS |
| GTTTCAACTGGAGAAGGCTT+AGG | 0.556827 | 8.2:+1842187 | None:intergenic |
| ATTGGAATCCGCAACATCGT+TGG | 0.558661 | 8.2:+1843257 | None:intergenic |
| ATCAGGTTAAGCTTATAGGT+GGG | 0.564029 | 8.2:-1842699 | MS.gene68934:CDS |
| AAATTCATGTCGCTTTGGAA+AGG | 0.564241 | 8.2:-1842388 | MS.gene68934:CDS |
| TTGAGAGCATTCAGAAGCTG+AGG | 0.567455 | 8.2:-1842535 | MS.gene68934:CDS |
| CTGCGTAACTCGAATAATGC+GGG | 0.569413 | 8.2:-1842937 | MS.gene68934:CDS |
| CAGCACTAATAAAGCAGCAA+CGG | 0.570912 | 8.2:+1841631 | None:intergenic |
| CTGAGGAAACAGCATAATGA+GGG | 0.571882 | 8.2:-1842518 | MS.gene68934:CDS |
| GGATATGAGGAAGCTGGGTA+GGG | 0.572489 | 8.2:-1842317 | MS.gene68934:CDS |
| TGATGGTCTCACCAGCTCCC+GGG | 0.572700 | 8.2:+1843319 | None:intergenic |
| GCAGCTTCCAGTTCCTCCGG+GGG | 0.573305 | 8.2:+1841833 | None:intergenic |
| AAGCTTAACCTGATCTTGGA+TGG | 0.573478 | 8.2:+1842708 | None:intergenic |
| GCTGAGGAAACAGCATAATG+AGG | 0.576341 | 8.2:-1842519 | MS.gene68934:CDS |
| ACTGGAAGCTGCAGAAGTTG+AGG | 0.582118 | 8.2:-1841822 | MS.gene68934:CDS |
| TCAGGTTAAGCTTATAGGTG+GGG | 0.582799 | 8.2:-1842698 | MS.gene68934:CDS |
| TGGAGCTGTTACCACTCCCC+CGG | 0.584602 | 8.2:-1841849 | MS.gene68934:CDS |
| TGCAGCTTCCAGTTCCTCCG+GGG | 0.585000 | 8.2:+1841832 | None:intergenic |
| TCGTTGGATATGAGGAAGCT+GGG | 0.585457 | 8.2:-1842322 | MS.gene68934:CDS |
| GATCAGGTTAAGCTTATAGG+TGG | 0.588270 | 8.2:-1842700 | MS.gene68934:CDS |
| CGAAATGGTTCAAGGACCAA+TGG | 0.589471 | 8.2:-1843400 | MS.gene68934:CDS |
| GAAACCTGCTGCTGAACCTG+TGG | 0.589585 | 8.2:-1842248 | MS.gene68934:CDS |
| TGCGGAAAGGAAGAAGAAGT+TGG | 0.595747 | 8.2:-1841963 | MS.gene68934:CDS |
| AGGGGATGCCAACGATGTTG+CGG | 0.601967 | 8.2:-1843265 | MS.gene68934:CDS |
| TGTATCGTTAAGTTCCTCCT+CGG | 0.606286 | 8.2:+1842894 | None:intergenic |
| AATGGTTCAAGGACCAATGG+TGG | 0.610119 | 8.2:-1843397 | MS.gene68934:CDS |
| TGGAGATGGATTTGCTGAAG+GGG | 0.611918 | 8.2:-1843283 | MS.gene68934:CDS |
| GAAAAGGTCGCAAAGGAGAG+TGG | 0.616316 | 8.2:-1841746 | MS.gene68934:CDS |
| TCCCACAATCTCAACCGTCA+TGG | 0.620480 | 8.2:+1843425 | None:intergenic |
| TGCAAAAGCAAAGCTTGCTG+CGG | 0.622098 | 8.2:-1841981 | MS.gene68934:CDS |
| CGAGAGCATTCCATTGAACG+AGG | 0.624400 | 8.2:-1842841 | MS.gene68934:CDS |
| GGTTTCAGTTCTTCCCACAG+TGG | 0.627100 | 8.2:+1842265 | None:intergenic |
| GTAACTCGAATAATGCGGGT+CGG | 0.630509 | 8.2:-1842933 | MS.gene68934:CDS |
| CCGTATATGCTCGTCCGAGG+AGG | 0.631171 | 8.2:-1842908 | MS.gene68934:CDS |
| GGACCAATGGTGGACAATGG+AGG | 0.634541 | 8.2:-1843387 | MS.gene68934:CDS |
| CAAGGACCAATGGTGGACAA+TGG | 0.636651 | 8.2:-1843390 | MS.gene68934:CDS |
| AATGAAGGAAAAGGTCGCAA+AGG | 0.636873 | 8.2:-1841753 | MS.gene68934:CDS |
| GGGCCGTATATGCTCGTCCG+AGG | 0.638480 | 8.2:-1842911 | MS.gene68934:CDS |
| CGTCACGAAACTGCCAAAGG+AGG | 0.653459 | 8.2:-1842212 | MS.gene68934:CDS |
| AGTCGTCACGAAACTGCCAA+AGG | 0.660021 | 8.2:-1842215 | MS.gene68934:CDS |
| AATGCTCTCGTTGCTGAATG+CGG | 0.664196 | 8.2:+1842854 | None:intergenic |
| GCTGCGTAACTCGAATAATG+CGG | 0.670944 | 8.2:-1842938 | MS.gene68934:CDS |
| TAGGTGTATCCAAGCACCAA+CGG | 0.679503 | 8.2:+1841605 | None:intergenic |
| AAGAATTGCCTGCACCTACG+CGG | 0.687308 | 8.2:-1843215 | MS.gene68934:CDS |
| GAGAGCATTCCATTGAACGA+GGG | 0.702316 | 8.2:-1842840 | MS.gene68934:CDS |
| AATGGTGAATGATGTTGTCG+AGG | 0.703499 | 8.2:-1841786 | MS.gene68934:CDS |
| TGAGGAAACAGCATAATGAG+GGG | 0.705659 | 8.2:-1842517 | MS.gene68934:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATTTGAAAACTAAAT+CGG | - | chr8.2:1842887-1842906 | MS.gene68934:CDS | 15.0% |
| ! | GAAAACTAAATCGGATAATA+AGG | - | chr8.2:1842896-1842915 | MS.gene68934:CDS | 25.0% |
| ! | GAAAAGAATTATTTCATCGT+TGG | - | chr8.2:1842680-1842699 | MS.gene68934:CDS | 25.0% |
| ! | TGAATTTGAAAATCCTCATA+AGG | - | chr8.2:1842944-1842963 | MS.gene68934:CDS | 25.0% |
| !! | AGTTTTCAAATCTTTACCTT+TGG | + | chr8.2:1842883-1842902 | None:intergenic | 25.0% |
| !! | ATTCTTTTTACTTTGTCAGA+TGG | - | chr8.2:1841830-1841849 | MS.gene68934:CDS | 25.0% |
| !!! | ATCTTCAATTTGCTTGATTT+TGG | + | chr8.2:1842385-1842404 | None:intergenic | 25.0% |
| AAGAAAGCAAAGAAGAAATC+TGG | - | chr8.2:1843149-1843168 | MS.gene68934:intron | 30.0% | |
| AATCCATGTCAAGTAATTGT+TGG | + | chr8.2:1843366-1843385 | None:intergenic | 30.0% | |
| ATCAACAAGAAAATGAAGCT+CGG | - | chr8.2:1841906-1841925 | MS.gene68934:CDS | 30.0% | |
| CAAAAACAAACCAAAACCAA+AGG | - | chr8.2:1842864-1842883 | MS.gene68934:CDS | 30.0% | |
| TTATTTCATCGTTGGATATG+AGG | - | chr8.2:1842688-1842707 | MS.gene68934:CDS | 30.0% | |
| TTGATAGATGGATCATCATA+AGG | + | chr8.2:1841859-1841878 | None:intergenic | 30.0% | |
| ! | TTCAAAAAGCTATTCTGAAG+CGG | - | chr8.2:1843333-1843352 | MS.gene68934:CDS | 30.0% |
| !! | CAAATCTTTACCTTTGGTTT+TGG | + | chr8.2:1842877-1842896 | None:intergenic | 30.0% |
| !!! | TTCATCTGTTTTAATTTCGC+TGG | + | chr8.2:1843002-1843021 | None:intergenic | 30.0% |
| ACCAAGTTAGAGGATACTAT+TGG | - | chr8.2:1842276-1842295 | MS.gene68934:CDS | 35.0% | |
| AGTCCAACAATTACTTGACA+TGG | - | chr8.2:1843360-1843379 | MS.gene68934:CDS | 35.0% | |
| ATCAATCTCGCTTTGATAGA+TGG | + | chr8.2:1841871-1841890 | None:intergenic | 35.0% | |
| ATCAGGTTAAGCTTATAGGT+GGG | - | chr8.2:1842319-1842338 | MS.gene68934:CDS | 35.0% | |
| ATCATTCACCATTTCCTGTT+CGG | + | chr8.2:1843225-1843244 | None:intergenic | 35.0% | |
| CAAGATCAGGTTAAGCTTAT+AGG | - | chr8.2:1842315-1842334 | MS.gene68934:CDS | 35.0% | |
| CCAAGTTAGAGGATACTATT+GGG | - | chr8.2:1842277-1842296 | MS.gene68934:CDS | 35.0% | |
| CTATAAGCTTAACCTGATCT+TGG | + | chr8.2:1842317-1842336 | None:intergenic | 35.0% | |
| TAAAAAGAATGAATCCGCGT+AGG | + | chr8.2:1841820-1841839 | None:intergenic | 35.0% | |
| TCCAAATGAGCCAAATATGA+TGG | + | chr8.2:1841719-1841738 | None:intergenic | 35.0% | |
| TCTCAGATTAAGCTTCTAAG+AGG | - | chr8.2:1841983-1842002 | MS.gene68934:CDS | 35.0% | |
| ! | ACCATCATATTTGGCTCATT+TGG | - | chr8.2:1841715-1841734 | MS.gene68934:CDS | 35.0% |
| ! | AGAGCATTATCGATGAGAAA+TGG | - | chr8.2:1842023-1842042 | MS.gene68934:CDS | 35.0% |
| ! | ATATTTGGCTCATTTGGAGA+TGG | - | chr8.2:1841721-1841740 | MS.gene68934:CDS | 35.0% |
| ! | ATTCTTCAACAGCGTTTTCT+CGG | + | chr8.2:1841789-1841808 | None:intergenic | 35.0% |
| ! | GAAAGGTGGCAAAACTTTTA+GGG | - | chr8.2:1842647-1842666 | MS.gene68934:CDS | 35.0% |
| ! | GATGAACTTTTACAGACAGA+GGG | - | chr8.2:1842603-1842622 | MS.gene68934:intron | 35.0% |
| ! | TGATGAACTTTTACAGACAG+AGG | - | chr8.2:1842602-1842621 | MS.gene68934:intron | 35.0% |
| !! | AAATTCATGTCGCTTTGGAA+AGG | - | chr8.2:1842630-1842649 | MS.gene68934:intron | 35.0% |
| !! | ATAGCTTTTTGAATCGACTC+TGG | + | chr8.2:1843326-1843345 | None:intergenic | 35.0% |
| !! | CGTACGATTTTGGTAGAAAT+AGG | + | chr8.2:1842531-1842550 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTTGTTTTTGAGC+TGG | + | chr8.2:1842861-1842880 | None:intergenic | 35.0% |
| AAGCTTAACCTGATCTTGGA+TGG | + | chr8.2:1842313-1842332 | None:intergenic | 40.0% | |
| AATGAAGGAAAAGGTCGCAA+AGG | - | chr8.2:1843265-1843284 | MS.gene68934:CDS | 40.0% | |
| AATGGTGAATGATGTTGTCG+AGG | - | chr8.2:1843232-1843251 | MS.gene68934:CDS | 40.0% | |
| CAAATCTACTGCACTTGGAA+AGG | - | chr8.2:1841654-1841673 | MS.gene68934:CDS | 40.0% | |
| CAGCACTAATAAAGCAGCAA+CGG | + | chr8.2:1843390-1843409 | None:intergenic | 40.0% | |
| CCCAATAGTATCCTCTAACT+TGG | + | chr8.2:1842280-1842299 | None:intergenic | 40.0% | |
| CTGAGGAAACAGCATAATGA+GGG | - | chr8.2:1842500-1842519 | MS.gene68934:CDS | 40.0% | |
| GATCAGGTTAAGCTTATAGG+TGG | - | chr8.2:1842318-1842337 | MS.gene68934:CDS | 40.0% | |
| GGAAGCTGAGAAGAAACTTA+AGG | - | chr8.2:1843118-1843137 | MS.gene68934:intron | 40.0% | |
| GGATTTGGATGGTTTGAAGA+AGG | - | chr8.2:1842341-1842360 | MS.gene68934:CDS | 40.0% | |
| TAAGCTTATAGGTGGGGATT+TGG | - | chr8.2:1842326-1842345 | MS.gene68934:CDS | 40.0% | |
| TCAAACAGCTTGAGGATACA+AGG | - | chr8.2:1842223-1842242 | MS.gene68934:CDS | 40.0% | |
| TCAGGTTAAGCTTATAGGTG+GGG | - | chr8.2:1842320-1842339 | MS.gene68934:CDS | 40.0% | |
| TGAGATTGTGGGATTCGAAA+TGG | - | chr8.2:1841603-1841622 | MS.gene68934:CDS | 40.0% | |
| TGAGGAAACAGCATAATGAG+GGG | - | chr8.2:1842501-1842520 | MS.gene68934:CDS | 40.0% | |
| TGATCTTGGATGGCATCTTT+CGG | + | chr8.2:1842303-1842322 | None:intergenic | 40.0% | |
| TGCAATGAAGACCAAGTTAG+AGG | - | chr8.2:1842266-1842285 | MS.gene68934:CDS | 40.0% | |
| TGTATCGTTAAGTTCCTCCT+CGG | + | chr8.2:1842127-1842146 | None:intergenic | 40.0% | |
| TTCCTGTAGAGACTGGATAT+CGG | + | chr8.2:1842426-1842445 | None:intergenic | 40.0% | |
| ! | AATTTCGCTGGATCGATTTC+AGG | + | chr8.2:1842990-1843009 | None:intergenic | 40.0% |
| ! | CCTCAAGCTGTTTGATTTCT+CGG | + | chr8.2:1842218-1842237 | None:intergenic | 40.0% |
| ! | CTTGGTCTTCATTGCAGAAT+TGG | + | chr8.2:1842262-1842281 | None:intergenic | 40.0% |
| ! | GGAAAGGTGGCAAAACTTTT+AGG | - | chr8.2:1842646-1842665 | MS.gene68934:CDS | 40.0% |
| ! | GTGAGAAATTCATGTCGCTT+TGG | - | chr8.2:1842625-1842644 | MS.gene68934:intron | 40.0% |
| ! | TTCTTCAACAGCGTTTTCTC+GGG | + | chr8.2:1841788-1841807 | None:intergenic | 40.0% |
| ! | TTTGCGACCTTTTCCTTCAT+TGG | + | chr8.2:1843266-1843285 | None:intergenic | 40.0% |
| !! | TTGGAGATGGATTTGCTGAA+GGG | - | chr8.2:1841734-1841753 | MS.gene68934:CDS | 40.0% |
| !! | TTTGGAGATGGATTTGCTGA+AGG | - | chr8.2:1841733-1841752 | MS.gene68934:CDS | 40.0% |
| AAATCGTACGCTTCTGACCA+AGG | - | chr8.2:1842541-1842560 | MS.gene68934:CDS | 45.0% | |
| AATCGTACGCTTCTGACCAA+GGG | - | chr8.2:1842542-1842561 | MS.gene68934:CDS | 45.0% | |
| AATGCTCTCGTTGCTGAATG+CGG | + | chr8.2:1842167-1842186 | None:intergenic | 45.0% | |
| AATGGTTCAAGGACCAATGG+TGG | - | chr8.2:1841621-1841640 | MS.gene68934:CDS | 45.0% | |
| ACTGCACTTGGAAAGGAGAA+TGG | - | chr8.2:1841661-1841680 | MS.gene68934:CDS | 45.0% | |
| AGAAGGAGAGACAAGCGATT+CGG | - | chr8.2:1842358-1842377 | MS.gene68934:CDS | 45.0% | |
| ATCGTTGGATATGAGGAAGC+TGG | - | chr8.2:1842695-1842714 | MS.gene68934:CDS | 45.0% | |
| ATTGGAATCCGCAACATCGT+TGG | + | chr8.2:1841764-1841783 | None:intergenic | 45.0% | |
| CATTCCATTGAACGAGGGAA+AGG | - | chr8.2:1842183-1842202 | MS.gene68934:CDS | 45.0% | |
| CCGAGAAATCAAACAGCTTG+AGG | - | chr8.2:1842215-1842234 | MS.gene68934:CDS | 45.0% | |
| CGAAATGGTTCAAGGACCAA+TGG | - | chr8.2:1841618-1841637 | MS.gene68934:CDS | 45.0% | |
| CTGATGCACTGAATGCAAAG+TGG | - | chr8.2:1841939-1841958 | MS.gene68934:CDS | 45.0% | |
| CTGCGTAACTCGAATAATGC+GGG | - | chr8.2:1842081-1842100 | MS.gene68934:CDS | 45.0% | |
| CTTATAGGTGGGGATTTGGA+TGG | - | chr8.2:1842330-1842349 | MS.gene68934:CDS | 45.0% | |
| GAAAGATGCCATCCAAGATC+AGG | - | chr8.2:1842302-1842321 | MS.gene68934:CDS | 45.0% | |
| GCTGAGGAAACAGCATAATG+AGG | - | chr8.2:1842499-1842518 | MS.gene68934:CDS | 45.0% | |
| GCTGCGTAACTCGAATAATG+CGG | - | chr8.2:1842080-1842099 | MS.gene68934:CDS | 45.0% | |
| GCTGGTGAGACCATCATATT+TGG | - | chr8.2:1841706-1841725 | MS.gene68934:CDS | 45.0% | |
| GGCAAAGTTTCAACTGGAGA+AGG | + | chr8.2:1842840-1842859 | None:intergenic | 45.0% | |
| GTAACTCGAATAATGCGGGT+CGG | - | chr8.2:1842085-1842104 | MS.gene68934:CDS | 45.0% | |
| GTGGGATTCGAAATGGTTCA+AGG | - | chr8.2:1841610-1841629 | MS.gene68934:CDS | 45.0% | |
| GTTTCAACTGGAGAAGGCTT+AGG | + | chr8.2:1842834-1842853 | None:intergenic | 45.0% | |
| TAACTCGAATAATGCGGGTC+GGG | - | chr8.2:1842086-1842105 | MS.gene68934:CDS | 45.0% | |
| TAGGTGTATCCAAGCACCAA+CGG | + | chr8.2:1843416-1843435 | None:intergenic | 45.0% | |
| TCAGTTCTTCCTGTAGAGAC+TGG | + | chr8.2:1842433-1842452 | None:intergenic | 45.0% | |
| TCGTTGGATATGAGGAAGCT+GGG | - | chr8.2:1842696-1842715 | MS.gene68934:CDS | 45.0% | |
| TGAGCTGGCAAAGTTTCAAC+TGG | + | chr8.2:1842846-1842865 | None:intergenic | 45.0% | |
| TGCACTGAATGCAAAGTGGT+CGG | - | chr8.2:1841943-1841962 | MS.gene68934:CDS | 45.0% | |
| TGCGGAAAGGAAGAAGAAGT+TGG | - | chr8.2:1843055-1843074 | MS.gene68934:intron | 45.0% | |
| TGGAAAGCTGGAAAAAGACC+CGG | - | chr8.2:1841681-1841700 | MS.gene68934:CDS | 45.0% | |
| TGGAAAGGAGAATGGAAAGC+TGG | - | chr8.2:1841669-1841688 | MS.gene68934:CDS | 45.0% | |
| TTTGCCTTTCCCTCGTTCAA+TGG | + | chr8.2:1842190-1842209 | None:intergenic | 45.0% | |
| ! | AACAGCGTTTTCTCGGGTAT+TGG | + | chr8.2:1841782-1841801 | None:intergenic | 45.0% |
| ! | ACCTTTTCCTTCATTGGAGC+CGG | + | chr8.2:1843260-1843279 | None:intergenic | 45.0% |
| ! | TCCCACAGTGGTTTTTCATC+CGG | + | chr8.2:1842744-1842763 | None:intergenic | 45.0% |
| ! | TTTATTAGTGCTGCTGCCGT+TGG | - | chr8.2:1843397-1843416 | MS.gene68934:CDS | 45.0% |
| !! | GAGAGCATTCCATTGAACGA+GGG | - | chr8.2:1842178-1842197 | MS.gene68934:CDS | 45.0% |
| !! | TGCAAAAGCAAAGCTTGCTG+CGG | - | chr8.2:1843037-1843056 | MS.gene68934:intron | 45.0% |
| !! | TGGAGATGGATTTGCTGAAG+GGG | - | chr8.2:1841735-1841754 | MS.gene68934:CDS | 45.0% |
| !! | TGGTCAGAAGCGTACGATTT+TGG | + | chr8.2:1842541-1842560 | None:intergenic | 45.0% |
| !! | TTCATGTCGCTTTGGAAAGG+TGG | - | chr8.2:1842633-1842652 | MS.gene68934:intron | 45.0% |
| !! | TTGAGAGCATTCAGAAGCTG+AGG | - | chr8.2:1842483-1842502 | MS.gene68934:intron | 45.0% |
| !!! | ACGACTTTTGGTAATGCCAC+AGG | + | chr8.2:1842789-1842808 | None:intergenic | 45.0% |
| AACTCGAATAATGCGGGTCG+GGG | - | chr8.2:1842087-1842106 | MS.gene68934:CDS | 50.0% | |
| AAGAATTGCCTGCACCTACG+CGG | - | chr8.2:1841803-1841822 | MS.gene68934:CDS | 50.0% | |
| ACAGCAGAGGTCTCCTTATG+AGG | + | chr8.2:1842960-1842979 | None:intergenic | 50.0% | |
| ACCCGGATGAAAAACCACTG+TGG | - | chr8.2:1842739-1842758 | MS.gene68934:CDS | 50.0% | |
| ACTGGAAGCTGCAGAAGTTG+AGG | - | chr8.2:1843196-1843215 | MS.gene68934:intron | 50.0% | |
| AGAAGTTGAGGCAACCGAAC+AGG | - | chr8.2:1843208-1843227 | MS.gene68934:CDS | 50.0% | |
| AGCAGCTCTCAAAGCACAGA+AGG | - | chr8.2:1843097-1843116 | MS.gene68934:intron | 50.0% | |
| AGTCGTCACGAAACTGCCAA+AGG | - | chr8.2:1842803-1842822 | MS.gene68934:CDS | 50.0% | |
| CACCGATATCCAGTCTCTAC+AGG | - | chr8.2:1842421-1842440 | MS.gene68934:intron | 50.0% | |
| CCCGGATGAAAAACCACTGT+GGG | - | chr8.2:1842740-1842759 | MS.gene68934:CDS | 50.0% | |
| GAAAAGGTCGCAAAGGAGAG+TGG | - | chr8.2:1843272-1843291 | MS.gene68934:CDS | 50.0% | |
| GGAAAGCTGGAAAAAGACCC+GGG | - | chr8.2:1841682-1841701 | MS.gene68934:CDS | 50.0% | |
| GGAGGCAAATCTACTGCACT+TGG | - | chr8.2:1841649-1841668 | MS.gene68934:CDS | 50.0% | |
| GGATATGAGGAAGCTGGGTA+GGG | - | chr8.2:1842701-1842720 | MS.gene68934:CDS | 50.0% | |
| GGTTTCAGTTCTTCCCACAG+TGG | + | chr8.2:1842756-1842775 | None:intergenic | 50.0% | |
| TGAGGCAACCGAACAGGAAA+TGG | - | chr8.2:1843214-1843233 | MS.gene68934:CDS | 50.0% | |
| TGGATATGAGGAAGCTGGGT+AGG | - | chr8.2:1842700-1842719 | MS.gene68934:CDS | 50.0% | |
| TTCAGGCTCTTTCACAGCAG+AGG | + | chr8.2:1842973-1842992 | None:intergenic | 50.0% | |
| TTGCCTCCATTGTCCACCAT+TGG | + | chr8.2:1841637-1841656 | None:intergenic | 50.0% | |
| ! | CCCACAGTGGTTTTTCATCC+GGG | + | chr8.2:1842743-1842762 | None:intergenic | 50.0% |
| ! | CCTTTTCCTTCATTGGAGCC+GGG | + | chr8.2:1843259-1843278 | None:intergenic | 50.0% |
| ! | CTTTTCCTTCATTGGAGCCG+GGG | + | chr8.2:1843258-1843277 | None:intergenic | 50.0% |
| ! | GGCAGTTTCGTGACGACTTT+TGG | + | chr8.2:1842801-1842820 | None:intergenic | 50.0% |
| ! | TCGACTCTGGTCCTTTTGCT+CGG | + | chr8.2:1843313-1843332 | None:intergenic | 50.0% |
| !! | AAGCAAAGCTTGCTGCGGAA+AGG | - | chr8.2:1843042-1843061 | MS.gene68934:intron | 50.0% |
| !! | CAAGGACCAATGGTGGACAA+TGG | - | chr8.2:1841628-1841647 | MS.gene68934:CDS | 50.0% |
| !! | CGAGAGCATTCCATTGAACG+AGG | - | chr8.2:1842177-1842196 | MS.gene68934:CDS | 50.0% |
| AATGCCACAGGTTCAGCAGC+AGG | + | chr8.2:1842777-1842796 | None:intergenic | 55.0% | |
| AGAGATTCAGCCTCTGCAGC+AGG | - | chr8.2:1842047-1842066 | MS.gene68934:CDS | 55.0% | |
| AGGGGATGCCAACGATGTTG+CGG | - | chr8.2:1841753-1841772 | MS.gene68934:CDS | 55.0% | |
| AGGTTCCGAAGCCGAGCAAA+AGG | - | chr8.2:1843299-1843318 | MS.gene68934:CDS | 55.0% | |
| ATGAGGAAGCTGGGTAGGGA+CGG | - | chr8.2:1842705-1842724 | MS.gene68934:CDS | 55.0% | |
| ATGATGGTCTCACCAGCTCC+CGG | + | chr8.2:1841703-1841722 | None:intergenic | 55.0% | |
| CCCGGCTCCAATGAAGGAAA+AGG | - | chr8.2:1843256-1843275 | MS.gene68934:CDS | 55.0% | |
| CCTCCTCGGACGAGCATATA+CGG | + | chr8.2:1842113-1842132 | None:intergenic | 55.0% | |
| CGTCACGAAACTGCCAAAGG+AGG | - | chr8.2:1842806-1842825 | MS.gene68934:CDS | 55.0% | |
| GAAACCTGCTGCTGAACCTG+TGG | - | chr8.2:1842770-1842789 | MS.gene68934:CDS | 55.0% | |
| GAAGGCTTAGGCTCCTCCTT+TGG | + | chr8.2:1842822-1842841 | None:intergenic | 55.0% | |
| GAATGAATCCGCGTAGGTGC+AGG | + | chr8.2:1841814-1841833 | None:intergenic | 55.0% | |
| GAATGATGTTGTCGAGGCCC+CGG | - | chr8.2:1843238-1843257 | MS.gene68934:CDS | 55.0% | |
| TCGCAAAGGAGAGTGGTGTC+AGG | - | chr8.2:1843279-1843298 | MS.gene68934:CDS | 55.0% | |
| TCTGCAGCTTCCAGTTCCTC+CGG | + | chr8.2:1843191-1843210 | None:intergenic | 55.0% | |
| ! | CTGGTCCTTTTGCTCGGCTT+CGG | + | chr8.2:1843307-1843326 | None:intergenic | 55.0% |
| !! | GGACCAATGGTGGACAATGG+AGG | - | chr8.2:1841631-1841650 | MS.gene68934:CDS | 55.0% |
| CCGTATATGCTCGTCCGAGG+AGG | - | chr8.2:1842110-1842129 | MS.gene68934:CDS | 60.0% | |
| CTGCAGCTTCCAGTTCCTCC+GGG | + | chr8.2:1843190-1843209 | None:intergenic | 60.0% | |
| CTGGAAAAAGACCCGGGAGC+TGG | - | chr8.2:1841688-1841707 | MS.gene68934:CDS | 60.0% | |
| TGAGGAAGCTGGGTAGGGAC+GGG | - | chr8.2:1842706-1842725 | MS.gene68934:CDS | 60.0% | |
| TGATGGTCTCACCAGCTCCC+GGG | + | chr8.2:1841702-1841721 | None:intergenic | 60.0% | |
| TGCAGCTTCCAGTTCCTCCG+GGG | + | chr8.2:1843189-1843208 | None:intergenic | 60.0% | |
| TGGAGCTGTTACCACTCCCC+CGG | - | chr8.2:1843169-1843188 | MS.gene68934:intron | 60.0% | |
| TTTCCCAGTGCCTGCTGCAG+AGG | + | chr8.2:1842060-1842079 | None:intergenic | 60.0% | |
| ! | CTGACCAAGGGCACGTGATC+TGG | - | chr8.2:1842554-1842573 | MS.gene68934:CDS | 60.0% |
| AGCTGTTACCACTCCCCCGG+AGG | - | chr8.2:1843172-1843191 | MS.gene68934:intron | 65.0% | |
| CAGCCTCTGCAGCAGGCACT+GGG | - | chr8.2:1842054-1842073 | MS.gene68934:CDS | 65.0% | |
| GCAGCCAGATCACGTGCCCT+TGG | + | chr8.2:1842561-1842580 | None:intergenic | 65.0% | |
| GCAGCTTCCAGTTCCTCCGG+GGG | + | chr8.2:1843188-1843207 | None:intergenic | 65.0% | |
| GGGCCGTATATGCTCGTCCG+AGG | - | chr8.2:1842107-1842126 | MS.gene68934:CDS | 65.0% | |
| TACCACTCCCCCGGAGGAAC+TGG | - | chr8.2:1843178-1843197 | MS.gene68934:intron | 65.0% | |
| TCAGCCTCTGCAGCAGGCAC+TGG | - | chr8.2:1842053-1842072 | MS.gene68934:CDS | 65.0% | |
| TTCCAGTTCCTCCGGGGGAG+TGG | + | chr8.2:1843183-1843202 | None:intergenic | 65.0% | |
| ! | GTGCTGCTGCCGTTGGTGCT+TGG | - | chr8.2:1843404-1843423 | MS.gene68934:CDS | 65.0% |
| CGAGGCCCCGGCTCCAATGA+AGG | - | chr8.2:1843250-1843269 | MS.gene68934:CDS | 70.0% | |
| GGACGGGCGCGTGAGGAACC+CGG | - | chr8.2:1842722-1842741 | MS.gene68934:CDS | 75.0% | |
| TGGGTAGGGACGGGCGCGTG+AGG | - | chr8.2:1842715-1842734 | MS.gene68934:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 1841595 | 1843445 | 1841595 | ID=MS.gene68934 |
| chr8.2 | mRNA | 1841595 | 1843445 | 1841595 | ID=MS.gene68934.t1;Parent=MS.gene68934 |
| chr8.2 | exon | 1843197 | 1843445 | 1843197 | ID=MS.gene68934.t1.exon1;Parent=MS.gene68934.t1 |
| chr8.2 | CDS | 1843197 | 1843445 | 1843197 | ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1 |
| chr8.2 | exon | 1842636 | 1842989 | 1842636 | ID=MS.gene68934.t1.exon2;Parent=MS.gene68934.t1 |
| chr8.2 | CDS | 1842636 | 1842989 | 1842636 | ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1 |
| chr8.2 | exon | 1842495 | 1842606 | 1842495 | ID=MS.gene68934.t1.exon3;Parent=MS.gene68934.t1 |
| chr8.2 | CDS | 1842495 | 1842606 | 1842495 | ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1 |
| chr8.2 | exon | 1841595 | 1842418 | 1841595 | ID=MS.gene68934.t1.exon4;Parent=MS.gene68934.t1 |
| chr8.2 | CDS | 1841595 | 1842418 | 1841595 | ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1 |
| Gene Sequence |
| Protein sequence |
