AlfalfaGEDB | MS.gene68934

M. sativa cultivar XinJiangDaYe / MS.gene68934

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68934.t1	XP_004487714.1	59.5	620	138	9	1	512	1	615	2.10E-135	492.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68934.t1	O23144	38.6	606	238	14	1	489	1	589	6.2e-43	176.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68934.t1	A0A1S2XDM5	59.5	620	138	9	1	512	1	615	1.5e-135	492.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene68934	0.803282	3.76E-49	-1.69E-46
MS.gene057260	MS.gene68934	0.812258	4.64E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68934.t1	MTR_4g132200	82.112	464	47	3	84	512	144	606	0.0	681
MS.gene68934.t1	MTR_2g085330	71.767	464	86	4	84	512	156	609	1.30e-177	513
MS.gene68934.t1	MTR_2g085330	68.182	88	24	2	1	85	1	87	7.85e-28	117
MS.gene68934.t1	MTR_2g085330	71.767	464	86	4	84	512	221	674	2.01e-176	512
MS.gene68934.t1	MTR_2g085330	68.182	88	24	2	1	85	66	152	1.91e-27	117
MS.gene68934.t1	MTR_2g090520	29.444	180	90	5	136	279	53	231	2.28e-11	64.7
MS.gene68934.t1	MTR_2g090520	29.444	180	90	5	136	279	196	374	3.84e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68934.t1	AT4G27500	41.685	463	204	13	84	497	152	597	4.51e-79	259
MS.gene68934.t1	AT4G27500	44.253	348	139	11	84	386	152	489	3.97e-71	236
MS.gene68934.t1	AT3G15340	30.290	449	236	12	94	492	29	450	2.32e-26	112
MS.gene68934.t1	AT3G15340	30.290	449	236	12	94	492	149	570	2.74e-26	113
MS.gene68934.t1	AT3G15340	30.290	449	236	12	94	492	149	570	2.74e-26	113
MS.gene68934.t1	AT5G36780	29.847	459	218	13	91	492	146	557	4.17e-26	112
MS.gene68934.t1	AT5G36690	29.847	459	218	13	91	492	146	557	4.17e-26	112
MS.gene68934.t1	AT1G53110	30.579	363	163	10	177	497	107	422	1.75e-25	109
MS.gene68934.t1	AT1G20970	25.750	400	197	10	84	403	858	1237	5.69e-12	69.3

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Find 132 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCATGTCGCTTTGGAA+AGG	0.564241	8.2:-1842388	MS.gene68934:CDS
AACTCGAATAATGCGGGTCG+GGG	0.520281	8.2:-1842931	MS.gene68934:CDS
AAGAAAGCAAAGAAGAAATC+TGG	0.382365	8.2:-1841869	MS.gene68934:CDS
AAGAATTGCCTGCACCTACG+CGG	0.687308	8.2:-1843215	MS.gene68934:CDS
AAGCAAAGCTTGCTGCGGAA+AGG	0.551331	8.2:-1841976	MS.gene68934:CDS
AAGCTTAACCTGATCTTGGA+TGG	0.573478	8.2:+1842708	None:intergenic
AATCCATGTCAAGTAATTGT+TGG	0.499156	8.2:+1841655	None:intergenic
AATGAAGGAAAAGGTCGCAA+AGG	0.636873	8.2:-1841753	MS.gene68934:CDS
AATGCCACAGGTTCAGCAGC+AGG	0.498655	8.2:+1842244	None:intergenic
AATGCTCTCGTTGCTGAATG+CGG	0.664196	8.2:+1842854	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGCAAAGAAGAAATC+TGG	-	chr8.2:1843149-1843168	MS.gene68934:intron	30.0%
AATCCATGTCAAGTAATTGT+TGG	+	chr8.2:1843366-1843385	None:intergenic	30.0%
ATCAACAAGAAAATGAAGCT+CGG	-	chr8.2:1841906-1841925	MS.gene68934:CDS	30.0%
CAAAAACAAACCAAAACCAA+AGG	-	chr8.2:1842864-1842883	MS.gene68934:CDS	30.0%
TTATTTCATCGTTGGATATG+AGG	-	chr8.2:1842688-1842707	MS.gene68934:CDS	30.0%
TTGATAGATGGATCATCATA+AGG	+	chr8.2:1841859-1841878	None:intergenic	30.0%
ACCAAGTTAGAGGATACTAT+TGG	-	chr8.2:1842276-1842295	MS.gene68934:CDS	35.0%
AGTCCAACAATTACTTGACA+TGG	-	chr8.2:1843360-1843379	MS.gene68934:CDS	35.0%
ATCAATCTCGCTTTGATAGA+TGG	+	chr8.2:1841871-1841890	None:intergenic	35.0%
ATCAGGTTAAGCTTATAGGT+GGG	-	chr8.2:1842319-1842338	MS.gene68934:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	1841595	1843445	1841595	ID=MS.gene68934
chr8.2	mRNA	1841595	1843445	1841595	ID=MS.gene68934.t1;Parent=MS.gene68934
chr8.2	exon	1843197	1843445	1843197	ID=MS.gene68934.t1.exon1;Parent=MS.gene68934.t1
chr8.2	CDS	1843197	1843445	1843197	ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1
chr8.2	exon	1842636	1842989	1842636	ID=MS.gene68934.t1.exon2;Parent=MS.gene68934.t1
chr8.2	CDS	1842636	1842989	1842636	ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1
chr8.2	exon	1842495	1842606	1842495	ID=MS.gene68934.t1.exon3;Parent=MS.gene68934.t1
chr8.2	CDS	1842495	1842606	1842495	ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1
chr8.2	exon	1841595	1842418	1841595	ID=MS.gene68934.t1.exon4;Parent=MS.gene68934.t1
chr8.2	CDS	1841595	1842418	1841595	ID=cds.MS.gene68934.t1;Parent=MS.gene68934.t1

Gene Sequence

>MS.gene68934

ATGACGGTTGAGATTGTGGGATTCGAAATGGTTCAAGGACCAATGGTGGACAATGGAGGCAAATCTACTGCACTTGGAAAGGAGAATGGAAAGCTGGAAAAAGACCCGGGAGCTGGTGAGACCATCATATTTGGCTCATTTGGAGATGGATTTGCTGAAGGGGATGCCAACGATGTTGCGGATTCCAATACCCGAGAAAACGCTGTTGAAGAATTGCCTGCACCTACGCGGATTCATTCTTTTTACTTTGTCAGATGGAGACCTTATGATGATCCATCTATCAAAGCGAGATTGATCAGCTTGATAAAGAGATCAACAAGAAAATGAAGCTCGGTTTCAGATCACTGATGCACTGAATGCAAAGTGGTCGGAACGATCAGATTTGATTTCTCAGATTAAGCTTCTAAGAGGTGACAACAAGCAGTTTCAGAGCATTATCGATGAGAAATGGAAGAGATTCAGCCTCTGCAGCAGGCACTGGGAAAGCTGCGTAACTCGAATAATGCGGGTCGGGGCCGTATATGCTCGTCCGAGGAGGAACTTAACGATACAATATATAGCTTGCAATACCGCATTCAGCAACGAGAGCATTCCATTGAACGAGGGAAAGGCAAAATTGTCCGAGAAATCAAACAGCTTGAGGATACAAGGAAGAAAGTCATTGCCAATTCTGCAATGAAGACCAAGTTAGAGGATACTATTGGGCCGAAAGATGCCATCCAAGATCAGGTTAAGCTTATAGGTGGGGATTTGGATGGTTTGAAGAAGGAGAGACAAGCGATTCGGTCCAAAATCAAGCAAATTGAAGATGTGCTGAAAACATTTACACCGATATCCAGTCTCTACAGGAAGAACTGACAGATGTTACTCAGAAGAGAGAAGAAGCTTTTGAGAGCATTCAGAAGCTGAGGAAACAGCATAATGAGGGGAACTCCTATTTCTACCAAAATCGTACGCTTCTGACCAAGGGCACGTGATCTGGCTGCTAAGAAAGATGTTACAGCTGTTGATGAACTTTTACAGACAGAGGGTGAGAAATTCATGTCGCTTTGGAAAGGTGGCAAAACTTTTAGGGCTGATTATGAGAAAAGAATTATTTCATCGTTGGATATGAGGAAGCTGGGTAGGGACGGGCGCGTGAGGAACCCGGATGAAAAACCACTGTGGGAAGAACTGAAACCTGCTGCTGAACCTGTGGCATTACCAAAAGTCGTCACGAAACTGCCAAAGGAGGAGCCTAAGCCTTCTCCAGTTGAAACTTTGCCAGCTCAAAAACAAACCAAAACCAAAGGTAAAGATTTGAAAACTAAATCGGATAATAAGGATTTAGCAGCAATTGATGATGAATATGAATTTGAAAATCCTCATAAGGAGACCTCTGCTGTGAAAGAGCCTGAAATCGATCCAGCGAAATTAAAACAGATGAAAAGAGAAGATGAAATTGCAAAAGCAAAGCTTGCTGCGGAAAGGAAGAAGAAGTTGGCAGAGAAAGCTGCAGCTAAAGCAGCTCTCAAAGCACAGAAGGAAGCTGAGAAGAAACTTAAGGATCGCGAGAAGAAAGCAAAGAAGAAATCTGGAGCTGTTACCACTCCCCCGGAGGAACTGGAAGCTGCAGAAGTTGAGGCAACCGAACAGGAAATGGTGAATGATGTTGTCGAGGCCCCGGCTCCAATGAAGGAAAAGGTCGCAAAGGAGAGTGGTGTCAGGTTCCGAAGCCGAGCAAAAGGACCAGAGTCGATTCAAAAAGCTATTCTGAAGCGGAAAAAGTCCAACAATTACTTGACATGGATTACCGTTGCTGCTTTATTAGTGCTGCTGCCGTTGGTGCTTGGATACACCTATCTTCTCTAA

Protein sequence

>MS.gene68934.t1

MTVEIVGFEMVQGPMVDNGGKSTALGKENGKLEKDPGAGETIIFGSFGDGFAEGDANDVADSNTRENAVEELPAPTRIHSFYFIQPLQQALGKLRNSNNAGRGRICSSEEELNDTIYSLQYRIQQREHSIERGKGKIVREIKQLEDTRKKVIANSAMKTKLEDTIGPKDAIQDQVKLIGGDLDGLKKERQAIRSKIKQIEDSLQEELTDVTQKREEAFESIQKLRKQHNEGNSYFYQNQGEKFMSLWKGGKTFRADYEKRIISSLDMRKLGRDGRVRNPDEKPLWEELKPAAEPVALPKVVTKLPKEEPKPSPVETLPAQKQTKTKGKDLKTKSDNKDLAAIDDEYEFENPHKETSAVKEPEIDPAKLKQMKREDEIAKAKLAAERKKKLAEKAAAKAALKAQKEAEKKLKDREKKAKKKSGAVTTPPEELEAAEVEATEQEMVNDVVEAPAPMKEKVAKESGVRFRSRAKGPESIQKAILKRKKSNNYLTWITVAALLVLLPLVLGYTYLL