AlfalfaGEDB | MS.gene69068

M. sativa cultivar XinJiangDaYe / MS.gene69068

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69068.t1	XP_013458401.1	76.2	101	24	0	2	102	166	266	1.40E-35	158.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69068.t1	F4JZW1	73.3	101	27	0	2	102	157	257	5.6e-36	151.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69068.t1	A0A072URZ5	76.2	101	24	0	2	102	166	266	1.0e-35	158.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054892	MS.gene69068	0.805101	1.57E-49	-1.69E-46
MS.gene054893	MS.gene69068	0.800828	1.20E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69068.t1	MTR_4g125260	76.238	101	24	0	2	102	166	266	7.24e-50	164
MS.gene69068.t1	MTR_1g015020	71.287	101	29	0	2	102	163	263	4.87e-47	154
MS.gene69068.t1	MTR_2g041960	73.267	101	27	0	2	102	160	260	6.02e-47	157
MS.gene69068.t1	MTR_3g105320	68.627	102	31	1	2	102	163	264	1.84e-43	145
MS.gene69068.t1	MTR_8g020920	66.327	98	33	0	2	99	160	257	2.56e-41	141
MS.gene69068.t1	MTR_7g074610	64.356	101	36	0	2	102	172	272	3.20e-41	140
MS.gene69068.t1	MTR_5g038450	67.647	102	31	2	2	102	220	320	5.53e-41	140
MS.gene69068.t1	MTR_3g040800	62.376	101	38	0	2	102	192	292	5.77e-41	139
MS.gene69068.t1	MTR_8g100155	62.376	101	38	0	2	102	152	252	1.12e-40	138
MS.gene69068.t1	MTR_5g088400	60.396	101	40	0	2	102	154	254	1.33e-40	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69068.t1	AT5G35580	73.267	101	27	0	2	102	157	257	1.84e-47	158
MS.gene69068.t1	AT5G35580	73.267	101	27	0	2	102	169	269	1.98e-47	158
MS.gene69068.t1	AT2G26290	70.297	101	30	0	2	102	169	269	5.29e-45	150
MS.gene69068.t1	AT2G05940	70.297	101	30	0	2	102	168	268	1.45e-44	150
MS.gene69068.t1	AT2G07180	64.356	101	36	0	2	102	171	271	5.41e-41	140
MS.gene69068.t1	AT2G07180	64.356	101	36	0	2	102	171	271	5.41e-41	140
MS.gene69068.t1	AT1G26970	64.356	101	34	1	2	102	53	151	1.07e-40	136
MS.gene69068.t1	AT5G56460	65.347	101	35	0	2	102	160	260	1.69e-40	138
MS.gene69068.t1	AT5G01020	63.366	101	37	0	2	102	150	250	1.98e-40	138
MS.gene69068.t1	AT3G28690	65.686	102	33	2	2	102	110	210	4.18e-40	136

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Find 16 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAACCAGTCATCTATA+GGG	0.532432	7.4:-25743386	MS.gene69068:CDS
AATCTTGTTGTCCATGGTAA+CGG	0.498238	7.4:+25743457	None:intergenic
AATGCAAAACTCTCAGATTT+TGG	0.152713	7.4:-25743210	MS.gene69068:CDS
ACACCAGAATATACAATGTC+AGG	0.509420	7.4:-25743114	None:intergenic
ACATGTGTGTCTTCTTCTCG+TGG	0.583237	7.4:+25743171	None:intergenic
ACATGTTTCAACTAGAGTTA+TGG	0.425291	7.4:-25743154	MS.gene69068:CDS
AGAATGAGTATATGCAGAAG+GGG	0.618262	7.4:-25743622	MS.gene69068:CDS
ATAGAATGAGTATATGCAGA+AGG	0.571859	7.4:-25743624	None:intergenic
ATTCTGGTGTAGCATTCATT+TGG	0.406021	7.4:+25743127	None:intergenic
ATTGCTGTTGAAGTTGCAAA+AGG	0.480468	7.4:-25743430	MS.gene69068:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATAGAGGATTGTTTGAAGA+TGG	+	chr7.4:25743422-25743441	None:intergenic	30.0%
	ACATGTTTCAACTAGAGTTA+TGG	-	chr7.4:25743581-25743600	MS.gene69068:intron	30.0%
	TTTATATCCCTATAGATGAC+TGG	+	chr7.4:25743359-25743378	None:intergenic	30.0%
	AAGGAAACCAGTCATCTATA+GGG	-	chr7.4:25743349-25743368	MS.gene69068:intron	35.0%
	ATTCTGGTGTAGCATTCATT+TGG	+	chr7.4:25743611-25743630	None:intergenic	35.0%
	TTTCCTTGCACCATGTAAAA+AGG	+	chr7.4:25743336-25743355	None:intergenic	35.0%
	CAAGGAAACCAGTCATCTAT+AGG	-	chr7.4:25743348-25743367	MS.gene69068:intron	40.0%
	ACATGTGTGTCTTCTTCTCG+TGG	+	chr7.4:25743567-25743586	None:intergenic	45.0%
	GACATTCAACACCGTTACCA+TGG	-	chr7.4:25743267-25743286	MS.gene69068:intron	45.0%
!	CTATTTATTCTTAATCTTCC+AGG	-	chr7.4:25743497-25743516	MS.gene69068:intron	25.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	25743115	25743642	25743115	ID=MS.gene69068
chr7.4	mRNA	25743115	25743642	25743115	ID=MS.gene69068.t1;Parent=MS.gene69068
chr7.4	exon	25743597	25743642	25743597	ID=MS.gene69068.t1.exon1;Parent=MS.gene69068.t1
chr7.4	CDS	25743597	25743642	25743597	ID=cds.MS.gene69068.t1;Parent=MS.gene69068.t1
chr7.4	exon	25743354	25743490	25743354	ID=MS.gene69068.t1.exon2;Parent=MS.gene69068.t1
chr7.4	CDS	25743354	25743490	25743354	ID=cds.MS.gene69068.t1;Parent=MS.gene69068.t1
chr7.4	exon	25743115	25743238	25743115	ID=MS.gene69068.t1.exon3;Parent=MS.gene69068.t1
chr7.4	CDS	25743115	25743238	25743115	ID=cds.MS.gene69068.t1;Parent=MS.gene69068.t1

Gene Sequence

>MS.gene69068

AATGAGTATATGCAGAAGGGGAGCCTAGAAAACCAATTATTTAAAAGTAAGAATTTCATTATTTGTTATAATATTAGCATCTTCATCTTTTACTATGCATAGATTTGAAGGATTAAACTTTTCTTAATTTGTATTTTTGTGGAATAATGTAGGACATTCAACACCGTTACCATGGACAACAAGATTGAAAATTGCTGTTGAAGTTGCAAAAGGACTAGCCTTTTTACATGGTGCAAGGAAACCAGTCATCTATAGGGATATAAAAGCAAGCAATATCTTATTAAATTCCGTAAGTACCATTAATCCATCTTCAAACAATCCTCTATTAAATTTAATGTTCTATTTTTTTTATCAATTATTGAACTCTGGATCTAACTCATTACTATTTATTCTTAATCTTCCAGGATTATAATGCAAAACTCTCAGATTTTGGCTTGGCAAAAGATGGTCCACGAGAAGAAGACACACATGTTTCAACTAGAGTTATGGACAACCAAATGAATGCTACACCAGAATATACAATGTCAG

Protein sequence

>MS.gene69068.t1

NEYMQKGSLENQLFKRHSTPLPWTTRLKIAVEVAKGLAFLHGARKPVIYRDIKASNILLNSDYNAKLSDFGLAKDGPREEDTHVSTRVMDNQMNATPEYTMS